CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025716	Escherichia coli BH100L substr. MG2017, complete genome	7 crisprs	cas14j,DinG,cas3,DEDDh,csa3,RT,PD-DExK,WYL	0	6	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025716_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_1

443895-444030

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025716_1

>merge|CP025716|1|443895-444030|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCGGAAATCTGTAGGCCTGATAAGCGTGGCGCTTCAGGCATTGGCCACCACAGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGC

>CP025716|1|1|443895-444030|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGC	GGAAATCTGTAGGCCTGATAAGCGTGGCGCTTCAGGCATTGGCCACCACA
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGC

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ36050.1\|440052_440916_+\|DUF2877-domain-containing-protein	unknown	unknown	gnl\|CDD\|378658
CP025716.1\|AUQ36046.1\|436498_437587_+\|cyclic-di-GMP-phosphodiesterase	unknown	unknown	gnl\|CDD\|214491
CP025716.1\|AUQ36051.1\|440905_442453_+\|acyl-CoA-synthetase-FdrA	unknown	unknown	gnl\|CDD\|180395
CP025716.1\|AUQ36060.1\|451789_452680_+\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
CP025716.1\|AUQ36058.1\|449588_449864_+\|DUF1471-domain-containing-protein	unknown	unknown	gnl\|CDD\|182151
CP025716.1\|AUQ36054.1\|445077_446460_+\|deaminase	unknown	unknown	gnl\|CDD\|235873
CP025716.1\|AUQ36043.1\|432873_433461_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|179115
CP025716.1\|AUQ36044.1\|433589_435623_+\|high-affinity-choline-transporter-BetT	unknown	unknown	gnl\|CDD\|236635
CP025716.1\|AUQ36048.1\|438652_439150_-\|DUF1097-domain-containing-protein	unknown	unknown	gnl\|CDD\|368942
CP025716.1\|AUQ36062.1\|454042_455494_+\|2-methylcitrate-dehydratase	unknown	unknown	gnl\|CDD\|181845
CP025716.1\|AUQ36052.1\|442452_443871_+\|DUF1116-domain-containing-protein	unknown	unknown	gnl\|CDD\|377673
CP025716.1\|AUQ36049.1\|439407_440013_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
CP025716.1\|AUQ36056.1\|446836_447886_+\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP025716.1\|AUQ36057.1\|448767_449442_-\|membrane-protein	unknown	unknown	gnl\|CDD\|273358
CP025716.1\|AUQ36059.1\|449964_451551_-\|propionate-catabolism-operon-regulatory-proteinPrpR	unknown	unknown	gnl\|CDD\|237963
CP025716.1\|AUQ36055.1\|446683_446821_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36045.1\|435989_436178_-\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36053.1\|444117_445068_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183464
CP025716.1\|AUQ36061.1\|452839_454009_+\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
CP025716.1\|AUQ36047.1\|437628_438561_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182237

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ36050.1\|440052_440916_+\|DUF2877-domain-containing-protein	gnl\|CDD\|378658	pfam11392, DUF2877, Protein of unknown function (DUF2877). This bacterial family of proteins are putative carboxylase proteins however this cannot be confirmed.	1.6644e-35
CP025716.1\|AUQ36056.1\|446836_447886_+\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0
CP025716.1\|AUQ36051.1\|440905_442453_+\|acyl-CoA-synthetase-FdrA	gnl\|CDD\|180395	PRK06091, PRK06091, membrane protein FdrA; Validated.	5.04071e-161
CP025716.1\|AUQ36060.1\|451789_452680_+\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0
CP025716.1\|AUQ36058.1\|449588_449864_+\|DUF1471-domain-containing-protein	gnl\|CDD\|182151	PRK09929, PRK09929, hypothetical protein; Provisional.	5.05349e-43
CP025716.1\|AUQ36054.1\|445077_446460_+\|deaminase	gnl\|CDD\|235873	PRK06846, PRK06846, putative deaminase; Validated.	0
CP025716.1\|AUQ36043.1\|432873_433461_-\|transcriptional-regulator	gnl\|CDD\|179115	PRK00767, PRK00767, transcriptional regulator BetI; Validated.	3.76664e-110
CP025716.1\|AUQ36044.1\|433589_435623_+\|high-affinity-choline-transporter-BetT	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
CP025716.1\|AUQ36048.1\|438652_439150_-\|DUF1097-domain-containing-protein	gnl\|CDD\|368942	pfam06496, DUF1097, Protein of unknown function (DUF1097). This family consists of several bacterial putative membrane proteins.	2.01468e-18
CP025716.1\|AUQ36062.1\|454042_455494_+\|2-methylcitrate-dehydratase	gnl\|CDD\|181845	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase.	0
CP025716.1\|AUQ36052.1\|442452_443871_+\|DUF1116-domain-containing-protein	gnl\|CDD\|377673	pfam06545, DUF1116, Protein of unknown function (DUF1116). This family contains hypothetical bacterial proteins of unknown function.	1.43271e-115
CP025716.1\|AUQ36049.1\|439407_440013_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	1.75537e-19
CP025716.1\|AUQ36057.1\|448767_449442_-\|membrane-protein	gnl\|CDD\|273358	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein. [Transport and binding proteins, Amino acids, peptides and amines].	8.68624e-75
CP025716.1\|AUQ36059.1\|449964_451551_-\|propionate-catabolism-operon-regulatory-proteinPrpR	gnl\|CDD\|237963	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional.	0
CP025716.1\|AUQ36046.1\|436498_437587_+\|cyclic-di-GMP-phosphodiesterase	gnl\|CDD\|214491	smart00052, EAL, Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.	9.73401e-102
CP025716.1\|AUQ36053.1\|444117_445068_+\|carbamate-kinase	gnl\|CDD\|183464	PRK12352, PRK12352, putative carbamate kinase; Reviewed.	0
CP025716.1\|AUQ36061.1\|452839_454009_+\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
CP025716.1\|AUQ36047.1\|437628_438561_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182237	PRK10094, PRK10094, HTH-type transcriptional activator AllS.	7.71252e-82

>CP025716.1|AUQ36052.1|442452_443871_+|DUF1116-domain-containing-protein
MSQSLFSQPLNVINVGIAMFSDDLKKQHVEVTQLDWTPPGQGNMQVVQALDNIADSPLADKITAANQQALERIIQSHPVLIGFDQAINVVPGMTPKTILHAGPPVTWEKMCGAMKGAVTGALVFEGLAKDLDEAAELAASGEITFSPCHEHDCVGSMAGVTSASMFMHIVKNKTYGNVAYTNMSEQMAKILRMGANDQSVIDRLNWMRDVQGPMLRDAMKIIGEIDLRLMLAQALHMGDECHNRNNAGTTLLIQALTPGIIQAGYSVEQQREVFEFVASSDYFSGPTWMAMCKAAMDAAHGIEYSTVVTTMARNGVEFGLRVSGLPGQWFTGPAQQVIGPMFAGYKPEDSGLDIGDSAITETYGIGGFAMATAPAIVALVGGTVEEAIDFSRQMREITLGENPNVTIPLLGFMGVPSAIDITRVGSSGILPVINTAIAHKDAGVGMIGAGIVHPPFACFEKAIFGWCERYGV
>CP025716.1|AUQ36051.1|440905_442453_+|acyl-CoA-synthetase-FdrA
MSVKIVIKPNTYFDSVSLMSISTRANKLDGVEQAFVAMATEMNKGVLKNLGLLTPELEQAKNGDLMIVINGKSGVDNEQLLAEIEELFNTKAQSGSHEARYATIASAKKYIPESNLAVISVNGLFAAREARQALQNDLNVMLFSDNVSVEDELALKQLAHEKGLLMMGPDCGTAIINGAALCFGNAVRRGNIGIVGASGTGSQELSVRIHEFGGGVSQLIGTGGRDLSEKIGGLMMLDAIGMLENDPQTEIIVLISKPPAPAVARKVLERARACRKPVVACFLGRGETSVDEQGLQFARGSKEAALKAVMLSGVKQEHLDLHTLNQPLIADVRARLQPQQKYIRGLFCGGTLCDETLFAVMEKHGDVYSNIQPDPEFRLQDINRSIKHTFLDFGDDDFTNGKPHPMIDPTNRISRLIEEARDPEVAVIVMDFVLGFGSHEDPVGSTIEAIKEAKAIAAAEGRELIILAYVLGTDLDTPSLEQQSQMLLDAGVILASSSTNTGLLAREFICKGEEA
>CP025716.1|AUQ36050.1|440052_440916_+|DUF2877-domain-containing-protein
MWALTADADFLAQRGQGQVEQVFARAVNIALPARQQLLTLLCEEYDNAPNSCRLALTHFNGLFRHGDKVQFDDQGITVGQHLHIEMSHCQRWLSPTLQMTALNFHLIAWQQWHDIIHQHLGENETLFNYRGDNPFYQALNKELHIKRRAVIQAVNDKQNIASAVASMMGLGIGLTPSADDYLTGLVLILFISGHPAEKYKEEFYRGLQRGRNNTTLLSAITLEAALQQRCRENIHRFIHNIIYDIPGNATQAIEKIKHIGSSSGCDMLYGMADGCALSQTYGGNYVS
>CP025716.1|AUQ36049.1|439407_440013_+|ankyrin-repeat-domain-containing-protein
MTIKNLPADYLLAAQQGDIDKVKNCLALGVDINTCDRHGKTAITLASLYQQYACVQALIDAGADINKQDHTCLNPFLISCLNDDLTLLRIILPAKPDLNCVTRFGGVGLTPACEKGHLSIVKELLANTEINVNQTNHVGWTPLLEAIVLNDGGIKQQAIVQLLLEHGASPHLTDKYGKTPLELARERGFEEIAQLLIAAGA
>CP025716.1|AUQ36048.1|438652_439150_-|DUF1097-domain-containing-protein
MNGLTATGVTVGICAGLWQLVSSHVGLSQGWELLGTIGFVAFCSFYAAGGGKSGFIKSLAVNYSGMVWAFFAALAAGWLAPVSGLSAFWASVITTVPFSAVVVWQGRFWLLSFIPGGFLGMTLFFASGMNWTVTLLGFLAGNCVGIISEYGGQKLSEATTKSDGY
>CP025716.1|AUQ36047.1|437628_438561_-|LysR-family-transcriptional-regulator
MNSIFTEENLLAFTTAARFGSFSKAAEELGLTTSAISYTIKRMETGLDVVLFTRSTRSIELTESGRYFFRKATDLLNDFHAIKRSIDTISQGIEARVRICINQLLYTPKHTARLLQVLKKQFPTCQITVTTEVYNGVWDAIINNQANIAIGAPDTLLDGGGIDYTEIGAIRWAFAIAPDHPLAFVPEPIAESQLRLYPNIMVEDTAHTINKKVGWLLHGQESILVPDFNTKCQCQILGEGIGFLPDYMVREAMAQSLLVTRQIHNPRQDSRMLLATQHSATGQVTQWIKKQFAPNGILTGIYQDLLHREN
>CP025716.1|AUQ36046.1|436498_437587_+|cyclic-di-GMP-phosphodiesterase
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGNNSHKYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGMIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVKKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
>CP025716.1|AUQ36045.1|435989_436178_-|hypothetical-protein
MSKGALYEFNNPDQLKIPQPHKHIASTFNDIMSKDVGYAYTSLLYAYPLTTCFLRLNPFSNR
>CP025716.1|AUQ36044.1|433589_435623_+|high-affinity-choline-transporter-BetT
MTDLSHSREKDKINPVVFYTSAGLILLFSLTTILFRDFSALWIGRTLDWVSKTFGWYYLLAATLYIVFVVCIACSRFGSVKLGPEQSKPEFSLLSWAAMLFAAGIGIDLMFFSVAEPITQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRYNLPLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPDSMAAKAALIALSVIIATISVTSGVDKGIRVLSELNVALALGLILFVLFMGDTSFLLNALVLNVGDYVNRFMGMTLNSFAFDRPVEWMNNWTLFFWAWWVAWSPFVGLFLARISRGRTIRQFVLGTLIIPFTFTLLWLSVFGNSALYEIIHGGAAFAEEAMVHPERGFYSLLAQYPAFTFSASVATITGLLFYVTSADSGALVLGNFTSQLKDINSDAPGWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPFSFVIFFVMAGLYKSLKVEDYRRESANRDTAPRPLGLQDRLSWKKRLSRLMNYPGTRYTKQMMETVCYPAMEEVAQELRLRGAYVELKNLPPEEGQQLGHLDLLVHMGEEQNFVYQIWPQQYSVPGFTYRARSGKSTYYRLETFLLEGSQGNDLMDYSKEQVITDILDQYERHLNFIHLHREAPGHSVMFPDA
>CP025716.1|AUQ36043.1|432873_433461_-|transcriptional-regulator
MPKLGMQSIRRRQLIDATLEAINEVGMHDATIAQIARRAGVSTGIISHYFRDKNGLLEATMRDITSQLRDAVLNRLHALPQGSAELRLQAIVGGNFDETQVSSAAMKAWLAFWASSMHQPMLYRLQQVSSRRLLSNLVSEFRRELPRQQAQEAGYGLAALIDGLWLRAALSGKPLDKPLAHSLTRHFITQHLSTD
>CP025716.1|AUQ36053.1|444117_445068_+|carbamate-kinase
MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGEFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTEAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIKT
>CP025716.1|AUQ36054.1|445077_446460_+|deaminase
MKENNSRREFLSQSGKMVTAAALFGPSVPLAHAGVAGTLNCEANNTMKITDPHYYLDNVLLETGFDYENGVAVQTRTARQTVEIQDGKIVALRENKQHPDATLPHYDAGGKLMLPTTRDMHIHLDKTFYGGPWRSLNRPAGTTIQDMIKLEQKMLPELQPYTQERAEKLIDLLQSKGTTIARSHCNIEPVSGLKNLQNLQAVLARRQAGFKCEIVAFPQHGLLLSKSESLMREAMQAGAHYVGGLDPTSVDGAMEKSLDTMFQIALDYDKGVDIHLHETTPAGVAAINYMVETVEKTPQLKGKLTISHAFALATLNEQQVDKLAHRMVAQQISIASTVPIGTLHMPLKQLHDKGVKVMTGTDSVIDHWSPYGLGDMLEKANLYAQLYIRPNEQNLSRSLFLATGDVLPLNEKGERVWPKAQDDASFVLVDASCSAEAVARISPRTATFHKGQLVWGSVAG
>CP025716.1|AUQ36055.1|446683_446821_+|hypothetical-protein
MGNVAALFHSGSRHVRAGSGGLNIGYIQWTRFAAMTYQASPNTHS
>CP025716.1|AUQ36056.1|446836_447886_+|NAD(P)-dependent-alcohol-dehydrogenase
MKIKAVGAYSAKQPLEPMDITRREPGPHDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKHAPGDLVGVGCIVDSCKHCEECEDGLENYCDYMTGTYNSPTPDEPGHTLGGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSESKREAAKALGADEVVNSRNADEMVAHVKSFDFILNTVAAPHNLDDFTTLLKRDGTITLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVIDNRTLTD
>CP025716.1|AUQ36057.1|448767_449442_-|membrane-protein
MMKLLHLFMDEITMDPLHAVYLTVGLFVITFFNPGANLFVVVQTSLASGRRAGVLTGLGVALGDAFYSGLGLFGLATLITQCEEIFSLIRIVGGAYLLWFAWCSSMRRHSTPQMSTLQQPISAPWYVFFRRGLITDLSNPQTVLFFISIFSVTLHAETPTWARLMAWAGIVLASIIWRVFLSQAFSLPAVRRAYGRMQRVASRVIGAIIGVFALRLIYEGVTQR
>CP025716.1|AUQ36058.1|449588_449864_+|DUF1471-domain-containing-protein
MKIISKMLVGALAFAVTNVYAAELMTKAEFEKVASQYEKIGDISTSNEMSTADAKEDLIKKADEKGADVLVLTSGQTDNKIHGTANIYKKK
>CP025716.1|AUQ36059.1|449964_451551_-|propionate-catabolism-operon-regulatory-proteinPrpR
MAHPPRLNDDKPVIWTVSVTRLFELFRDISLEFDHLANITPIQLGFEKAVTYIRKKLASERCDAIIAAGSNGAYLKSRLSVPVILIKPSGYDLLQALAKAGKLTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLITDLAEEAGMTGIFIYSAATVRQAFSDALDMTRMSLRHNTHDATRNALRTRYVLGDMLGQSPQMEQVRQTILLYARSSAAVLIEGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCNLEEDMQQGQFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKVSLAALSAPFAAALRQGLQASETMLVHYDWPGNIRELRNMMERLALFLSVESTPDLTPQFLQLLLPELARESAKTPIPGLLTAQQALEKFNGDKTAAANYLGISRTTFWRRLKS
>CP025716.1|AUQ36060.1|451789_452680_+|methylisocitrate-lyase
MSLHSPGKAFRAALTKENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGAEMLFPEAITELAMYRQFADAVQVPILANITEFGATPLFTTDELRSAHVAMALYPLSAFRAMNRAAEHVYNILRQEGTQKSVIDTMQTRNELYESINYYQYEEKLDDLFARGQVK
>CP025716.1|AUQ36061.1|452839_454009_+|2-methylcitrate-synthase
MSDTTILQNSTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHYRGYDILDLAEHCEFEEVAHLLIHGKLPTRDELAAYKTKLKALRGLPANVRTVLEALPAASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERIQPETDDDSIGGHFLHLLHGEKPSQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSDMYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPVYTIADPRHQVIKRVAKQLSQEGGSLKMYNIADRLETVMWESKKMFPNLDWFSAVSYNMMGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYVGPEDRQFVALDKRQ
>CP025716.1|AUQ36062.1|454042_455494_+|2-methylcitrate-dehydratase
MSVQINNIRPEFDREIVDIVDYVMNYEISSRVAYDTAHYCLLDTLGCGLEALEYPACKKLLGPIVPGTVVPNGVRVPGTQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRNAVASGKAPLTMKQVLTGMIKAHEIQGCIALENSFNRVGLDHVLLVKVASTAVVAEMLGLTREEILNAVSLAWVDGQSLRTYRHAPNTGTRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAPVWGFYDVSFKGESFRFQRPYGSYVMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACIRIIDKKGPLNNPADRDHCIQYMVAIPLLFGRLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEEVVVEYPIGHTRRRQDGIPKLVEKFKINLARQFPTRQQQRILEVSLDRTRLEQMPVNEYLDLYVI

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Crispr_ID: CP025716_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_2

803805-803946

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025716_2

>merge|CP025716|2|803805-803946|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGTAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>CP025716|2|2|803805-803946|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGTAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ36395.1\|806935_808153_+\|dihydrolipoyllysine-residue-succinyltransferasecomponent-of-2-oxoglutarate-dehydrogenase-complex	unknown	unknown	gnl\|CDD\|235571
CP025716.1\|AUQ36399.1\|811590_811863_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36401.1\|812966_814535_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-1	unknown	unknown	gnl\|CDD\|185052
CP025716.1\|AUQ36400.1\|811994_812111_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36402.1\|814550_815690_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-2	unknown	unknown	gnl\|CDD\|184965
CP025716.1\|AUQ36394.1\|804119_806921_+\|2-oxoglutarate-dehydrogenase-subunit-E1	unknown	unknown	gnl\|CDD\|236499
CP025716.1\|AUQ36385.1\|796029_796821_+\|endonuclease-VIII	unknown	unknown	gnl\|CDD\|182467
CP025716.1\|AUQ36390.1\|800529_800919_+\|succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
CP025716.1\|AUQ36392.1\|801259_803026_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
CP025716.1\|AUQ36391.1\|800912_801260_+\|succinate-dehydrogenase-hydrophobic-membraneanchor-subunit	unknown	unknown	gnl\|CDD\|181901
CP025716.1\|AUQ36388.1\|798537_799821_-\|type-II-citrate-synthase	unknown	unknown	gnl\|CDD\|180164
CP025716.1\|AUQ36386.1\|796817_797864_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225721
CP025716.1\|AUQ36396.1\|808246_809413_+\|succinyl-CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
CP025716.1\|AUQ36387.1\|798147_798390_-\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36389.1\|799808_799994_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36384.1\|795259_795994_+\|LamB/YcsF-family-protein	unknown	unknown	gnl\|CDD\|212111
CP025716.1\|AUQ36397.1\|809412_810282_+\|succinyl-CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
CP025716.1\|AUQ36393.1\|803041_803758_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
CP025716.1\|AUQ36403.1\|815704_815818_+\|Cyd-operon-protein-YbgT	unknown	unknown	gnl\|CDD\|227227
CP025716.1\|AUQ36398.1\|810521_811637_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ36395.1\|806935_808153_+\|dihydrolipoyllysine-residue-succinyltransferasecomponent-of-2-oxoglutarate-dehydrogenase-complex	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
CP025716.1\|AUQ36401.1\|812966_814535_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-1	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0
CP025716.1\|AUQ36394.1\|804119_806921_+\|2-oxoglutarate-dehydrogenase-subunit-E1	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
CP025716.1\|AUQ36402.1\|814550_815690_+\|cytochrome-bd-I-ubiquinol-oxidase-subunit-2	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
CP025716.1\|AUQ36390.1\|800529_800919_+\|succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	2.65605e-82
CP025716.1\|AUQ36392.1\|801259_803026_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP025716.1\|AUQ36391.1\|800912_801260_+\|succinate-dehydrogenase-hydrophobic-membraneanchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
CP025716.1\|AUQ36388.1\|798537_799821_-\|type-II-citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
CP025716.1\|AUQ36386.1\|796817_797864_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225721	COG3180, AbrB, Putative ammonia monooxygenase [General function prediction only].	8.43543e-109
CP025716.1\|AUQ36396.1\|808246_809413_+\|succinyl-CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
CP025716.1\|AUQ36385.1\|796029_796821_+\|endonuclease-VIII	gnl\|CDD\|182467	PRK10445, PRK10445, endonuclease VIII; Provisional.	0
CP025716.1\|AUQ36384.1\|795259_795994_+\|LamB/YcsF-family-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	2.71936e-140
CP025716.1\|AUQ36397.1\|809412_810282_+\|succinyl-CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
CP025716.1\|AUQ36393.1\|803041_803758_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
CP025716.1\|AUQ36403.1\|815704_815818_+\|Cyd-operon-protein-YbgT	gnl\|CDD\|227227	COG4890, COG4890, Predicted outer membrane lipoprotein [Function unknown].	4.51563e-12
CP025716.1\|AUQ36398.1\|810521_811637_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.36055e-18

>CP025716.1|AUQ36393.1|803041_803758_+|succinate-dehydrogenase-iron-sulfur-subunit
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>CP025716.1|AUQ36392.1|801259_803026_+|succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>CP025716.1|AUQ36391.1|800912_801260_+|succinate-dehydrogenase-hydrophobic-membraneanchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>CP025716.1|AUQ36390.1|800529_800919_+|succinate-dehydrogenase-cytochrome-b556-subunit
MIRNLKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>CP025716.1|AUQ36389.1|799808_799994_+|hypothetical-protein
MYQPFKVSLAPYCVRLPELKFAFAHQPGFTRLLFGSPLCERGENLGTELWALAGKGSIDDE
>CP025716.1|AUQ36388.1|798537_799821_-|type-II-citrate-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR
>CP025716.1|AUQ36387.1|798147_798390_-|hypothetical-protein
MIDLGKFNLLDIRRHTMSKTFSIKTTKSQNDQCTDGFKVSSSFYTEKTLVEEDKALLIGNGLKLRILDENASPYTFNKYA
>CP025716.1|AUQ36386.1|796817_797864_-|AbrB-family-transcriptional-regulator
MPVLQWGMLCVLSLLLSIGFLALHLPAALLLGPMIAGIIFSMRGVTLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAVNWPIVLAILLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRMMLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCLLRLPSGTMLIPMLAGAVLQSGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPGGLDTVAVIAAGSNADMALIMAMQTLRLFSILLTGPAIARFISTYAPKRSA
>CP025716.1|AUQ36385.1|796029_796821_+|endonuclease-VIII
MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKSYQSRLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLDIPRLSYATRGQVDENKYHGALFRFKVFHRDGEPCERCGGIIEKTTLSSRPFYWCPGCQH
>CP025716.1|AUQ36384.1|795259_795994_+|LamB/YcsF-family-protein
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACVREAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVFAQTLYQIGAQAAITRAQGGVMCHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGERYGLVTREEVFADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQYGRVKSITGEWAMVTAQTVCLHGDGEHALAFARRLRATFAEKGIVVAA
>CP025716.1|AUQ36394.1|804119_806921_+|2-oxoglutarate-dehydrogenase-subunit-E1
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>CP025716.1|AUQ36395.1|806935_808153_+|dihydrolipoyllysine-residue-succinyltransferasecomponent-of-2-oxoglutarate-dehydrogenase-complex
MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPTLAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>CP025716.1|AUQ36396.1|808246_809413_+|succinyl-CoA-ligase-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>CP025716.1|AUQ36397.1|809412_810282_+|succinyl-CoA-ligase-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>CP025716.1|AUQ36398.1|810521_811637_+|hypothetical-protein
MGVNSDVYAADVNIDILSATVKDKRIEGVSVTLQRNGAQSVSGTTNASGSVNLGSTFADDQDALLIVKKEGYSNLVVKCSCAGMTYAISPAMTSLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGSKTVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNDTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGANAATTRANSYYNIAKIYETAGQDADALQHYQLALHDAIL
>CP025716.1|AUQ36399.1|811590_811863_+|hypothetical-protein
MHCSIINSLFTMPFYKNESGIIFFNFICLLVFLVKLSIIHCFIILRMMEIEGFLMIIKHILMLFNHEFFNMIMYQYVILPDVLLNYRLLL
>CP025716.1|AUQ36400.1|811994_812111_+|hypothetical-protein
MQNNLDSNGEIMFILQVAAHMELNIIQSTLDELISLYP
>CP025716.1|AUQ36401.1|812966_814535_+|cytochrome-bd-I-ubiquinol-oxidase-subunit-1
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>CP025716.1|AUQ36402.1|814550_815690_+|cytochrome-bd-I-ubiquinol-oxidase-subunit-2
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
>CP025716.1|AUQ36403.1|815704_815818_+|Cyd-operon-protein-YbgT
MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI

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Crispr_ID: CP025716_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_3

934169-934316

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP025716_3

>merge|CP025716|3|934169-934316|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGCACACGTCGAGCTGGTGGGGATTAATGCTGGGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGCTCACTGCCGTACAGGCAGATAAAATG

>CP025716|3|3|934169-934316|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCACACGTCGAGCTGGTGGGGATTAATGCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCGCGGATCCTGTCTGCCAATAATGACAA
GCTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ36520.1\|931679_933956_+\|ATP-dependent-Clp-protease-ATP-binding-subunitClpA	unknown	unknown	gnl\|CDD\|236828
CP025716.1\|AUQ36512.1\|926196_926619_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
CP025716.1\|AUQ36523.1\|935948_937670_-\|cysteine/glutathione-ABC-transporter-ATP-bindingprotein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP025716.1\|AUQ36528.1\|941697_945717_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP025716.1\|AUQ36516.1\|929906_930188_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36519.1\|931328_931649_+\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP025716.1\|AUQ36514.1\|927248_929162_+\|peptidase-S14	unknown	unknown	gnl\|CDD\|132927
CP025716.1\|AUQ36527.1\|941068_941563_+\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP025716.1\|AUQ36518.1\|930472_930712_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36517.1\|930192_930372_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36525.1\|939559_940525_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP025716.1\|AUQ36522.1\|935202_935907_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP025716.1\|AUQ36513.1\|927042_927249_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36521.1\|934699_934918_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP025716.1\|AUQ36526.1\|940592_940706_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36529.1\|945875_946487_+\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP025716.1\|AUQ36511.1\|925942_926200_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ36530.1\|946497_947841_+\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP025716.1\|AUQ36524.1\|937670_939437_-\|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl\|CDD\|236870
CP025716.1\|AUQ36515.1\|929418_929904_+\|DUF1441-domain-containing-protein	unknown	unknown	gnl\|CDD\|311303

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ36520.1\|931679_933956_+\|ATP-dependent-Clp-protease-ATP-binding-subunitClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP025716.1\|AUQ36512.1\|926196_926619_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	8.45973e-25
CP025716.1\|AUQ36528.1\|941697_945717_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP025716.1\|AUQ36519.1\|931328_931649_+\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
CP025716.1\|AUQ36514.1\|927248_929162_+\|peptidase-S14	gnl\|CDD\|132927	cd07016, S14_ClpP_1, Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP, although the proteolytic subunit alone does possess some catalytic activity. Active site consists of the triad Ser, His and Asp; some members have lost all of these active site residues and are therefore inactive, while others may have one or two large insertions. ClpP seems to prefer hydrophobic or non-polar residues at P1 or P1' positions in its substrate. The protease exists as a tetradecamer made up of two heptameric rings stacked back-to-back such that the catalytic triad of each subunit is located at the interface between three monomers, thus making oligomerization essential for function.	5.13418e-81
CP025716.1\|AUQ36527.1\|941068_941563_+\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP025716.1\|AUQ36523.1\|935948_937670_-\|cysteine/glutathione-ABC-transporter-ATP-bindingprotein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP025716.1\|AUQ36525.1\|939559_940525_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP025716.1\|AUQ36522.1\|935202_935907_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.60016e-139
CP025716.1\|AUQ36521.1\|934699_934918_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP025716.1\|AUQ36529.1\|945875_946487_+\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP025716.1\|AUQ36524.1\|937670_939437_-\|thiol-reductant-ABC-exporter-subunit-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP025716.1\|AUQ36530.1\|946497_947841_+\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP025716.1\|AUQ36515.1\|929418_929904_+\|DUF1441-domain-containing-protein	gnl\|CDD\|311303	pfam07278, DUF1441, Protein of unknown function (DUF1441). This family consists of several hypothetical Enterobacterial proteins of around 160 residues in length. The function of this family is unknown. However, it appears to be distantly related to other HTH families so may act as a transcriptional regulator.	2.65817e-39

>CP025716.1|AUQ36520.1|931679_933956_+|ATP-dependent-Clp-protease-ATP-binding-subunitClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGSRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>CP025716.1|AUQ36519.1|931328_931649_+|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP025716.1|AUQ36518.1|930472_930712_+|hypothetical-protein
MQLHVSIFPKQENPFSGEGAIMFVIPVPLKRNTRFRRSWWTHSHIQLTLRVSIADPQTTTRQQNVTRFSRSMASLDPLS
>CP025716.1|AUQ36517.1|930192_930372_+|hypothetical-protein
MIFSKFASGEHRGNQPNPLILPESPIGGGWAACCGLFHHWWKSGATTGLDHQYGDAATE
>CP025716.1|AUQ36516.1|929906_930188_+|hypothetical-protein
MTESEILRLIRCAGGISQLADEQAAQPDTVTAENYARVVAEVMLRDGIELNGVDMRNIRTRVLELLAYRRRSQQRRESAKNTYQWKRPERLRR
>CP025716.1|AUQ36515.1|929418_929904_+|DUF1441-domain-containing-protein
MDRELKNLMLNINQLAAIAGICRQTAAARLKNIQPAGGHDKLKLYRVTDILTCFLDLPVPASLEEMEPHDRKAWYQSERERLKFEQETAQLIPADDVRKEMAIWGEIVSEELAKLPNILARDAGLKPMAVNRVQSIIDDLRNQIISRMVKNDVVNEVAKQA
>CP025716.1|AUQ36514.1|927248_929162_+|peptidase-S14
MNRWYTIKAADVRGAADISIYEEIGGFGVTAKQFAEDLKALGDVSHINLRIHSPGGDVFEGIAIYNLLRNHPADITVYIDGVAASMASVVAMAGDRVVMPENAMMMIHKPWGISGGNAGDMRDYADLLDKVETVLIPAYARKTGKSAQEITAMLEDETWMDGKECLKHGFADELLPSVRAMARIESKRTGDFLHMPETIKGMITPPQGAANIAGNEQKRINGISEVFSLFGSRYDGIKMACLEDASCTPEMAREKLLNELGRESTPSNKNTPPHIYAGNGNITGDAIRQGLYSRLGYERPERGNPYAMMSLFEMAQASLVDRGITVSGFINRSQVVNAAFTHSSSDFSHILAGGAEKSVLKGWQDSGETFQKWTRTGSLSNFHEAKRVGLNGFSKLDKVPEGAEYKYITTSDKGVPIALATYGNIFSVTRQAIINDDLTQLTTIPMAMGRAAARTVGNLVYLLLTSNGKFTDGKALFHADHKNLIAKDMDMVGLDEARKRMRLQEDANGDSLNITPAFVLVPAALESAARRAILSSSSVFPVGDESTINQNPGIINVVKDMAEVIVEPRLDKANSKEWYVAAAKGMDTIEVAYLDGMDTPYLEEQVGFTVDGVAWKVRIDAGVAALDYRGLLKSSGA
>CP025716.1|AUQ36513.1|927042_927249_+|hypothetical-protein
MNCINDLNTGEVKGGSVHLDAQTVMRLKQYRIDHINHHPNKPLPGVAQIVRHAVNTWLNQNGFASVGE
>CP025716.1|AUQ36512.1|926196_926619_+|single-stranded-DNA-binding-protein
MTAQIAAYGRLVADPQLKTTSKGTQMTMASMAVPLPCSQADDGQATMWLSVIAFGRQAEALAKHRKGELLSVAGNMQVNQWTGQNGETRQGWQVIADSVISARTARPGGKKGQQGQATDALNRAKQQAGNDDPYGDNIPF
>CP025716.1|AUQ36511.1|925942_926200_+|hypothetical-protein
MHTSGKLNNQKKQHSRPIDLTEHWLRVAIKIIDRNAGEGYAKAHPELISAFMTTAAANFATLTEREIAEAEQVTTINVKTGEQTA
>CP025716.1|AUQ36521.1|934699_934918_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP025716.1|AUQ36522.1|935202_935907_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>CP025716.1|AUQ36523.1|935948_937670_-|cysteine/glutathione-ABC-transporter-ATP-bindingprotein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLTRQGRYYQFKQGL
>CP025716.1|AUQ36524.1|937670_939437_-|thiol-reductant-ABC-exporter-subunit-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAIYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP025716.1|AUQ36525.1|939559_940525_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP025716.1|AUQ36526.1|940592_940706_+|hypothetical-protein
MTILLTICAIGSIDKQVKFSRHYHLCYLNFPLYKPIK
>CP025716.1|AUQ36527.1|941068_941563_+|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP025716.1|AUQ36528.1|941697_945717_+|DNA-translocase-FtsK
MSQEYTEDKEITLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPHQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQYQQPQYQQPQQPVAQQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVAPQPHDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGVGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP025716.1|AUQ36529.1|945875_946487_+|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP025716.1|AUQ36530.1|946497_947841_+|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR

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Crispr_ID: CP025716_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_4

2376023-2376136

Orphan

Consensus_repeat	Method
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025716_4

>merge|CP025716|4|2376023-2376136|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCACTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGGTTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

>CP025716|4|4|2376023-2376136|CRISPRCasFinder
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA	CTGGATGCCCAGATGCGGCATGAACGCCCTACCCAGCCTACGATGCGG
TTTGTAGGCCGGATAAGCGAAGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ37893.1\|2373685_2375971_+\|ribonucleoside-diphosphate-reductase-subunitalpha	unknown	unknown	gnl\|CDD\|181649
CP025716.1\|AUQ37897.1\|2378451_2379528_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
CP025716.1\|AUQ37899.1\|2381163_2382792_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-A	unknown	unknown	gnl\|CDD\|236847
CP025716.1\|AUQ37895.1\|2377290_2377545_+\|ferredoxin	unknown	unknown	gnl\|CDD\|182668
CP025716.1\|AUQ37903.1\|2385420_2386380_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
CP025716.1\|AUQ37892.1\|2373427_2373640_-\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ37894.1\|2376160_2377291_+\|ribonucleotide-diphosphate-reductase-subunitbeta	unknown	unknown	gnl\|CDD\|181647
CP025716.1\|AUQ37901.1\|2384037_2385228_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-C	unknown	unknown	gnl\|CDD\|132422
CP025716.1\|AUQ37886.1\|2358614_2363219_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
CP025716.1\|AUQ37887.1\|2363152_2363776_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
CP025716.1\|AUQ37890.1\|2368383_2369106_+\|bifunctional-3-demethylubiquinone3-O-methyltransferase/2-octaprenyl-6--hydroxy-phenolmethylase	unknown	unknown	gnl\|CDD\|235350
CP025716.1\|AUQ37896.1\|2377598_2378249_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182136
CP025716.1\|AUQ37902.1\|2385252_2385378_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ37889.1\|2365609_2368237_-\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502
CP025716.1\|AUQ37891.1\|2369245_2373004_-\|AIDA-I-family-autotransporter-YfaL	unknown	unknown	gnl\|CDD\|182059
CP025716.1\|AUQ37884.1\|2356183_2356960_-\|DUF2135-domain-containing-protein	unknown	unknown	gnl\|CDD\|227021
CP025716.1\|AUQ37900.1\|2382781_2384041_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-B	unknown	unknown	gnl\|CDD\|225617
CP025716.1\|AUQ37888.1\|2363772_2365461_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
CP025716.1\|AUQ37898.1\|2379532_2380891_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|236889
CP025716.1\|AUQ37885.1\|2356964_2358614_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ37885.1\|2356964_2358614_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	8.69726e-124
CP025716.1\|AUQ37893.1\|2373685_2375971_+\|ribonucleoside-diphosphate-reductase-subunitalpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
CP025716.1\|AUQ37897.1\|2378451_2379528_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
CP025716.1\|AUQ37896.1\|2377598_2378249_-\|hypothetical-protein	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	3.42273e-158
CP025716.1\|AUQ37903.1\|2385420_2386380_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
CP025716.1\|AUQ37899.1\|2381163_2382792_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
CP025716.1\|AUQ37894.1\|2376160_2377291_+\|ribonucleotide-diphosphate-reductase-subunitbeta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
CP025716.1\|AUQ37901.1\|2384037_2385228_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
CP025716.1\|AUQ37886.1\|2358614_2363219_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP025716.1\|AUQ37887.1\|2363152_2363776_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	4.78627e-139
CP025716.1\|AUQ37890.1\|2368383_2369106_+\|bifunctional-3-demethylubiquinone3-O-methyltransferase/2-octaprenyl-6--hydroxy-phenolmethylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.45677e-171
CP025716.1\|AUQ37898.1\|2379532_2380891_-\|MFS-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
CP025716.1\|AUQ37889.1\|2365609_2368237_-\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
CP025716.1\|AUQ37891.1\|2369245_2373004_-\|AIDA-I-family-autotransporter-YfaL	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
CP025716.1\|AUQ37884.1\|2356183_2356960_-\|DUF2135-domain-containing-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	4.7479e-153
CP025716.1\|AUQ37900.1\|2382781_2384041_+\|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-B	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
CP025716.1\|AUQ37888.1\|2363772_2365461_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
CP025716.1\|AUQ37895.1\|2377290_2377545_+\|ferredoxin	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53

>CP025716.1|AUQ37893.1|2373685_2375971_+|ribonucleoside-diphosphate-reductase-subunitalpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>CP025716.1|AUQ37892.1|2373427_2373640_-|hypothetical-protein
MREAAKNTIYRGYVWDSLQDSVKLVLLQVHNFVDNSGRKKWLPRTLGQTRCPGKSMGREKFVKNNRSVNS
>CP025716.1|AUQ37891.1|2369245_2373004_-|AIDA-I-family-autotransporter-YfaL
MRIIFLRKEYLSLLPSMIASLFSGNGAAAVIDSCQGYDIKASCQASRQSLSGNMQDWSIADGQWLIFSGMANNASGGAVFLQHSAEFTISPQNETGMTLFADNSVSGEYNNGGAIFAKENSTINLANVIFDSNVAGGYGGAIYSAGTNDTGAADLRVTNAVFHNNIANDGKGGAIYTINNDVYLSDDAFNNNQAYTSTSYSDGDGGAIDVTDNSTDNTHLSGKTIINNTSFTNNYAEGYGGAIYTSSTTSPYLIDISVDDNYDQNNGVMIDENNSASGYDHSATAAAGGFMYIGHSVAEFNIAADKTLVIGNTSNDGAIDSLAGTGVIVKEGAGELVLNADNNAFTGEMSIQNGEVTLGRSDELMNVGDTHCQSDPQDCFGLMVGSTVHSEYQAELNVGNTQQTFVHSLTGFANGILNIDAGGNVTVNQGGFSGSIQGEGQLTVAQDGSYLLTGAQSMALTGDIVVEDNAVLSLAGNQADLRAMQSDPQSIVLNGGVLDLSDFTTWDGDSSYNDGLQISGSGGTVIGSNDVVDISSGDDLHIGGSDASQNGVYVVINAGDQRVTLANNNGYLGNTQIASGTLEVSDNSQLGDTSYNRSVIFTDPQQHSEMDVTTDVDTRSATTGQGRNIEMRADGEIHVEDGVDTQWGGLMADSTGQQLDSVSTLTKSGGGTLELTASGTATSAVRVEDGTLKGEAENIIPYVSSLWVGEDGVFETGQNQDIRSIDATSGGDIDITDGTVLRLTQQDTNQALDASLFSGDGTLVNATDGVTLAGELNTNLETDSLTYLSDVTVNGNLTNTSGAISLQNSVAGDTLTVNGDYTGGGTLFLDSELNGDDSASDQLVLNGNTSGNTTVVVNPITGIGEPTSTGIKVVDFAADPAQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVNPTPPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYFNNLRAANQAFVMERRDHAGGDGQTLNLRVIGGRYHYTAVGQLAQHEDTSTVQLSGNLFSGHWGDDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGNQKQGAWLDSWLQYVWFNNDVSEQDDGVDHYHSSGIIASLEAGYQWLPGHGVVIEPQTQVIYQGVHQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLNYYHDPHATEIEEDGSTISDDAVKQRGEIKVGITGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>CP025716.1|AUQ37890.1|2368383_2369106_+|bifunctional-3-demethylubiquinone3-O-methyltransferase/2-octaprenyl-6--hydroxy-phenolmethylase
MNAEKSPVNHNVDHKEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHMTGLHYNPITNTFKLGPGVDVNYMLHTQNK
>CP025716.1|AUQ37889.1|2365609_2368237_-|DNA-gyrase-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>CP025716.1|AUQ37888.1|2363772_2365461_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGLGAIVLLSTGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKLNSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEAAAIASDLLSGKKRWETSFGLEERTAEKTPVRQRIVVSARLLGFGYQRLVPSFAGMRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>CP025716.1|AUQ37887.1|2363152_2363776_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>CP025716.1|AUQ37886.1|2358614_2363219_-|alpha-2-macroglobulin-family-protein
MDTQRFQSQFHWHLSFKFSGAIAACLSLSLVGTGLANADDSLPSSNYAPPAGGTFFLLADSSFSRSEEAKVRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKTGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELQSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMFGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTKDFSEADTSDINDSMILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAPGSEWIGMQVK
>CP025716.1|AUQ37885.1|2356964_2358614_-|DUF2300-domain-containing-protein
MNWYRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSVLPDTLTTPLGSLWKLYIYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDSALVRSCGLYFAPQRLHIGADMWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATALNRVLPVPTQVASGQCVLVDLFARYPLKKVTEEKSTTAVKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTYLQQNADRDGDCLSIPDSSATQRVSASPATVGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLISGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>CP025716.1|AUQ37884.1|2356183_2356960_-|DUF2135-domain-containing-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTLGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>CP025716.1|AUQ37894.1|2376160_2377291_+|ribonucleotide-diphosphate-reductase-subunitbeta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>CP025716.1|AUQ37895.1|2377290_2377545_+|ferredoxin
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>CP025716.1|AUQ37896.1|2377598_2378249_-|hypothetical-protein
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>CP025716.1|AUQ37897.1|2378451_2379528_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNVLEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>CP025716.1|AUQ37898.1|2379532_2380891_-|MFS-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRNGG
>CP025716.1|AUQ37899.1|2381163_2382792_+|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVHVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNSRPCTTADLALPGSQEPAEATLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>CP025716.1|AUQ37900.1|2382781_2384041_+|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-B
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTEIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLKVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLANDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>CP025716.1|AUQ37901.1|2384037_2385228_+|anaerobic-glycerol-3-phosphate-dehydrogenasesubunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>CP025716.1|AUQ37902.1|2385252_2385378_+|hypothetical-protein
MLLPGIFAYTIPCPMYTLQRSENSSENVSQRLKLADVKGPG
>CP025716.1|AUQ37903.1|2385420_2386380_+|hypothetical-protein
MTESTTSSPHDAVFKTFMFSPDAARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQKGKVEGMHEQAIKIALRMLEQGFEREIVLATTQLTDADIPNCY

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Crispr_ID: CP025716_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_5

4287221-4287422

Orphan

Consensus_repeat	Method
GTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA	PILER-CR

2 spacers

The CRISPR arrays of CP025716_5

>merge|CP025716|5|4287221-4287422|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGCCGTATCCGGCATACAGTGCCCGATGCGACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCCGCATCCGGCAA

>CP025716|5|1|4287221-4287422|PILER-CR
CGCATCCGGCAATTGGTGCACGATGCCTGATGCGAC	GCTGGCGCGTCTTATCAGGCCTACATTGGTGCCGGATCGGTAGACCGGATAAGGCGTTCACGC
CGTATCCGGCATACAGTGCCCGATGCGACGCTGCCG	CGTCTTATCGGGCCTACAAAAGTTCTGAACCGTAGACCGGATAAGGCGTTCACGCC
GCATCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ39757.1\|4288599_4290789_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	unknown	unknown	gnl\|CDD\|183293
CP025716.1\|AUQ39759.1\|4292309_4292924_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|183205
CP025716.1\|AUQ39754.1\|4284904_4286398_+\|3-octaprenyl-4-hydroxybenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
CP025716.1\|AUQ39748.1\|4280142_4281783_+\|ubiquinone-biosynthesis-regulatory-proteinkinase-UbiB	unknown	unknown	gnl\|CDD\|235310
CP025716.1\|AUQ39753.1\|4284249_4284738_-\|transcription/translation-regulatory-transformerprotein-RfaH	unknown	unknown	gnl\|CDD\|181611
CP025716.1\|AUQ39762.1\|4300554_4301082_-\|molybdopterin-guanine-dinucleotide-biosynthesisprotein-B	unknown	unknown	gnl\|CDD\|236750
CP025716.1\|AUQ39752.1\|4283470_4284253_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	unknown	unknown	gnl\|CDD\|182449
CP025716.1\|AUQ39755.1\|4286443_4287145_+\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|236142
CP025716.1\|AUQ39761.1\|4294425_4294971_+\|menaquinone-dependent-protoporphyrinogen-IXdehydrogenase	unknown	unknown	gnl\|CDD\|182966
CP025716.1\|AUQ39760.1\|4292962_4294414_+\|potassium-transporter	unknown	unknown	gnl\|CDD\|182698
CP025716.1\|AUQ39756.1\|4287426_4288590_-\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|181592
CP025716.1\|AUQ39764.1\|4301717_4301987_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368826
CP025716.1\|AUQ39751.1\|4282652_4283429_+\|twin-arginine-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
CP025716.1\|AUQ39763.1\|4301063_4301648_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
CP025716.1\|AUQ39747.1\|4279540_4280146_+\|ubiquinone-biosynthesis-protein-UbiJ	unknown	unknown	gnl\|CDD\|225706
CP025716.1\|AUQ39746.1\|4278771_4279527_+\|ubiquinone/menaquinone-biosynthesisC-methyltransferase-UbiE	unknown	unknown	gnl\|CDD\|234689
CP025716.1\|AUQ39758.1\|4290978_4292310_+\|Xaa-Pro-dipeptidase	unknown	unknown	gnl\|CDD\|237444
CP025716.1\|AUQ39749.1\|4281861_4282131_+\|twin-arginine-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179592
CP025716.1\|AUQ39750.1\|4282134_4282650_+\|twin-arginine-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
CP025716.1\|AUQ39765.1\|4302063_4303050_+\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|236974

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ39757.1\|4288599_4290789_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	0
CP025716.1\|AUQ39759.1\|4292309_4292924_+\|YigZ-family-protein	gnl\|CDD\|183205	PRK11568, PRK11568, IMPACT family protein.	4.48916e-152
CP025716.1\|AUQ39754.1\|4284904_4286398_+\|3-octaprenyl-4-hydroxybenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
CP025716.1\|AUQ39748.1\|4280142_4281783_+\|ubiquinone-biosynthesis-regulatory-proteinkinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
CP025716.1\|AUQ39753.1\|4284249_4284738_-\|transcription/translation-regulatory-transformerprotein-RfaH	gnl\|CDD\|181611	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH.	7.04858e-121
CP025716.1\|AUQ39762.1\|4300554_4301082_-\|molybdopterin-guanine-dinucleotide-biosynthesisprotein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.11706e-122
CP025716.1\|AUQ39752.1\|4283470_4284253_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	0
CP025716.1\|AUQ39755.1\|4286443_4287145_+\|NAD(P)H-flavin-reductase	gnl\|CDD\|236142	PRK08051, fre, FMN reductase; Validated.	3.9413e-172
CP025716.1\|AUQ39761.1\|4294425_4294971_+\|menaquinone-dependent-protoporphyrinogen-IXdehydrogenase	gnl\|CDD\|182966	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase.	6.96931e-127
CP025716.1\|AUQ39760.1\|4292962_4294414_+\|potassium-transporter	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	0
CP025716.1\|AUQ39756.1\|4287426_4288590_-\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|181592	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.	0
CP025716.1\|AUQ39764.1\|4301717_4301987_+\|hypothetical-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	4.97051e-53
CP025716.1\|AUQ39751.1\|4282652_4283429_+\|twin-arginine-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	0
CP025716.1\|AUQ39763.1\|4301063_4301648_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	4.97316e-99
CP025716.1\|AUQ39747.1\|4279540_4280146_+\|ubiquinone-biosynthesis-protein-UbiJ	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	5.01909e-94
CP025716.1\|AUQ39746.1\|4278771_4279527_+\|ubiquinone/menaquinone-biosynthesisC-methyltransferase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.2623e-150
CP025716.1\|AUQ39758.1\|4290978_4292310_+\|Xaa-Pro-dipeptidase	gnl\|CDD\|237444	PRK13607, PRK13607, proline dipeptidase; Provisional.	0
CP025716.1\|AUQ39749.1\|4281861_4282131_+\|twin-arginine-translocase-subunit-TatA	gnl\|CDD\|179592	PRK03554, tatA, Sec-independent protein translocase subunit TatA.	6.75664e-44
CP025716.1\|AUQ39750.1\|4282134_4282650_+\|twin-arginine-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	4.56825e-89
CP025716.1\|AUQ39765.1\|4302063_4303050_+\|serine/threonine-protein-kinase	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0

>CP025716.1|AUQ39755.1|4286443_4287145_+|NAD(P)H-flavin-reductase
MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLTEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
>CP025716.1|AUQ39754.1|4284904_4286398_+|3-octaprenyl-4-hydroxybenzoate-decarboxylase
MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
>CP025716.1|AUQ39753.1|4284249_4284738_-|transcription/translation-regulatory-transformerprotein-RfaH
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPSTPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
>CP025716.1|AUQ39752.1|4283470_4284253_+|3'-5'-ssDNA/RNA-exonuclease-TatD
MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAVTEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQELAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF
>CP025716.1|AUQ39751.1|4282652_4283429_+|twin-arginine-translocase-subunit-TatC
MSVEDTQPLITHLIELRKRLLNCIISVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE
>CP025716.1|AUQ39750.1|4282134_4282650_+|twin-arginine-translocase-subunit-TatB
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNETAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
>CP025716.1|AUQ39749.1|4281861_4282131_+|twin-arginine-translocase-subunit-TatA
MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV
>CP025716.1|AUQ39748.1|4280142_4281783_+|ubiquinone-biosynthesis-regulatory-proteinkinase-UbiB
MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKPLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR
>CP025716.1|AUQ39747.1|4279540_4280146_+|ubiquinone-biosynthesis-protein-UbiJ
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLAALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKALRGGAKFLHHGIKRQQRYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
>CP025716.1|AUQ39746.1|4278771_4279527_+|ubiquinone/menaquinone-biosynthesisC-methyltransferase-UbiE
MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKTMMQDAGFESVDYYNLTAGVVALHRGYKF
>CP025716.1|AUQ39756.1|4287426_4288590_-|acetyl-CoA-C-acyltransferase-FadA
MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEALATLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARDLGLKPRACVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQFGLATMCIGLGQGIATVFERV
>CP025716.1|AUQ39757.1|4288599_4290789_-|fatty-acid-oxidation-complex-subunit-alpha-FadB
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFNANRFGQKNGLGFWRYKEDSKGKPKKEEDVVVDDLLAKVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGMRNKARHNEPYYPPVEPARPVGDLKTA
>CP025716.1|AUQ39758.1|4290978_4292310_+|Xaa-Pro-dipeptidase
MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPNSFWTEDVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA
>CP025716.1|AUQ39759.1|4292309_4292924_+|YigZ-family-protein
MESWLIPAAPVMVVEEIKKSRFITLLAHTDGVEAAKAFVESVRAEHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRYYGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDGKIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE
>CP025716.1|AUQ39760.1|4292962_4294414_+|potassium-transporter
MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFSLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE
>CP025716.1|AUQ39761.1|4294425_4294971_+|menaquinone-dependent-protoporphyrinogen-IXdehydrogenase
MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK
>CP025716.1|AUQ39762.1|4300554_4301082_-|molybdopterin-guanine-dinucleotide-biosynthesisprotein-B
MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLHFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQDG
>CP025716.1|AUQ39763.1|4301063_4301648_-|molybdenum-cofactor-guanylyltransferase-MobA
MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQVSGLKVIEDSLADYPGPLAGMLSVMQQESGEWFLFCPCDTPYIPHDLASRLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAFMRLAGGHAVDFSDRKEAFINVNTPEELARWQEKR
>CP025716.1|AUQ39764.1|4301717_4301987_+|hypothetical-protein
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE
>CP025716.1|AUQ39765.1|4302063_4303050_+|serine/threonine-protein-kinase
MNNSAFTFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTVTFIEQAKVLQEPPLQLTPMY

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Crispr_ID: CP025716_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_6

4347849-4347975

Orphan

Consensus_repeat	Method
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025716_6

>merge|CP025716|6|4347849-4347975|CRISPRCasFinder
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCAATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCTGTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCA

>CP025716|6|5|4347849-4347975|CRISPRCasFinder
GTAGGCCGGATAAGGCACTCGTGCCGCATCCGGCA	ATCAATGCCTGATGCGACGCTGTCGCGTCTTATCAGGCCTACAACTATTGCCGACCT
GTAGGCCGGATAAGGCACTTGTGCCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ39807.1\|4346656_4346971_-\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
CP025716.1\|AUQ39813.1\|4351812_4352751_+\|HTH-type-transcriptional-activator-RhaR	unknown	unknown	gnl\|CDD\|184091
CP025716.1\|AUQ39815.1\|4353746_4353914_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ39804.1\|4343255_4344089_+\|sulfurtransferase-FdhD	unknown	unknown	gnl\|CDD\|234823
CP025716.1\|AUQ39799.1\|4337111_4337324_+\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|279710
CP025716.1\|AUQ39806.1\|4345221_4346616_+\|glycoporin	unknown	unknown	gnl\|CDD\|374908
CP025716.1\|AUQ39801.1\|4338464_4339100_-\|formate-dehydrogenase-cytochrome-b556(fdo)subunit	unknown	unknown	gnl\|CDD\|182608
CP025716.1\|AUQ39818.1\|4354947_4355931_+\|2-keto-3-deoxygluconate-permease	unknown	unknown	gnl\|CDD\|273271
CP025716.1\|AUQ39817.1\|4354716_4354845_-\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ39808.1\|4346980_4347805_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
CP025716.1\|AUQ39803.1\|4343065_4343320_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ39809.1\|4347979_4349239_-\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
CP025716.1\|AUQ39810.1\|4349235_4350705_-\|rhamnulokinase	unknown	unknown	gnl\|CDD\|182609
CP025716.1\|AUQ39811.1\|4350783_4350933_+\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ39812.1\|4350992_4351829_+\|transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|184094
CP025716.1\|AUQ39814.1\|4352747_4353782_-\|rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|115061
CP025716.1\|AUQ39805.1\|4344138_4344801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372366
CP025716.1\|AUQ39816.1\|4354067_4354688_+\|superoxide-dismutase---Mn	unknown	unknown	gnl\|CDD\|182843
CP025716.1\|AUQ39802.1\|4339096_4339999_-\|formate-dehydrogenase-O-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273705
CP025716.1\|AUQ39800.1\|4337538_4338468_-\|formate-dehydrogenase-accessory-protein-FdhE	unknown	unknown	gnl\|CDD\|179595

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ39807.1\|4346656_4346971_-\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	3.46584e-64
CP025716.1\|AUQ39813.1\|4351812_4352751_+\|HTH-type-transcriptional-activator-RhaR	gnl\|CDD\|184091	PRK13500, PRK13500, HTH-type transcriptional activator RhaR.	0
CP025716.1\|AUQ39804.1\|4343255_4344089_+\|sulfurtransferase-FdhD	gnl\|CDD\|234823	PRK00724, PRK00724, formate dehydrogenase accessory sulfurtransferase FdhD.	1.63704e-160
CP025716.1\|AUQ39799.1\|4337111_4337324_+\|CopG-family-transcriptional-regulator	gnl\|CDD\|279710	pfam01402, RHH_1, Ribbon-helix-helix protein, copG family. The structure of this protein repressor, which is the shortest reported to date and the first isolated from a plasmid, has a homodimeric ribbon-helix-helix arrangement. The helix-turn-helix-like structure is involved in dimerization and not DNA binding as might have been expected.	1.58147e-06
CP025716.1\|AUQ39806.1\|4345221_4346616_+\|glycoporin	gnl\|CDD\|374908	pfam16966, Porin_8, Porin-like glycoporin RafY. This is a family of Gram-negative Gammaproteobacteria putative raffinose-like porins.	0
CP025716.1\|AUQ39801.1\|4338464_4339100_-\|formate-dehydrogenase-cytochrome-b556(fdo)subunit	gnl\|CDD\|182608	PRK10639, PRK10639, formate dehydrogenase cytochrome b556 subunit.	6.79831e-145
CP025716.1\|AUQ39808.1\|4346980_4347805_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	0
CP025716.1\|AUQ39809.1\|4347979_4349239_-\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
CP025716.1\|AUQ39810.1\|4349235_4350705_-\|rhamnulokinase	gnl\|CDD\|182609	PRK10640, rhaB, rhamnulokinase; Provisional.	0
CP025716.1\|AUQ39814.1\|4352747_4353782_-\|rhamnose/proton-symporter-RhaT	gnl\|CDD\|115061	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.	0
CP025716.1\|AUQ39812.1\|4350992_4351829_+\|transcriptional-activator-RhaS	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	0
CP025716.1\|AUQ39818.1\|4354947_4355931_+\|2-keto-3-deoxygluconate-permease	gnl\|CDD\|273271	TIGR00793, 2-keto-3-deoxygluconate_permease, 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	7.59733e-165
CP025716.1\|AUQ39805.1\|4344138_4344801_+\|hypothetical-protein	gnl\|CDD\|372366	pfam12889, DUF3829, Protein of unknown function (DUF3829). This is a small family of proteins from several bacterial species, whose function is not known. It may, however, be related to the GvpL_GvpF family of proteins, pfam06386.	1.78941e-51
CP025716.1\|AUQ39816.1\|4354067_4354688_+\|superoxide-dismutase---Mn	gnl\|CDD\|182843	PRK10925, PRK10925, superoxide dismutase [Mn].	1.57037e-152
CP025716.1\|AUQ39802.1\|4339096_4339999_-\|formate-dehydrogenase-O-iron-sulfur-subunit	gnl\|CDD\|273705	TIGR01582, Formate_dehydrogenase_iron-sulfur_subunit, formate dehydrogenase, beta subunit, Fe-S containing. This model represents the beta subunit of the gamma-proteobacterial formate dehydrogenase. This subunit contains four 4Fe-4S clusters and is involved in transmitting electrons from the alpha subunit (TIGR01553) at the periplasmic space to the gamma subunit which spans the cytoplasmic membrane. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	1.25079e-161
CP025716.1\|AUQ39800.1\|4337538_4338468_-\|formate-dehydrogenase-accessory-protein-FdhE	gnl\|CDD\|179595	PRK03564, PRK03564, formate dehydrogenase accessory protein FdhE; Provisional.	0

>CP025716.1|AUQ39808.1|4346980_4347805_-|rhamnulose-1-phosphate-aldolase
MQNITQSWFVQGMIKATTDAWLKGWDERNGGNLTLRLDDADIAPYHDNFHQQPRYIPLSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGIVKVDSDGAGYHILWGLTNEAVPTSELPAHFLSHCERIKATNGKDRVIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSGPTLDETFGLIDTAEKSAQILVKVYSMGGMKQTISREELIALGQRFGVTPLASALAL
>CP025716.1|AUQ39807.1|4346656_4346971_-|L-rhamnose-mutarotase
MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIYLDKAHNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANADNSPVSSELQEVFYLP
>CP025716.1|AUQ39806.1|4345221_4346616_+|glycoporin
MKKSTLSLAIGLLLACSTGMAKTQHLTLEQRMALLEERLEAAEMRAAKAESQVKQLQTQQAAEIREIKAAQGNTPVNGQATAESAKKNSTSPNLLLSGYGDLKIYGDVEFNMDAESNHGLLAMTNADVNSDPTNEQWNLNGRILLGFDGMRKLDNGYFAGFSAQPLGDMHGSVNIDDAVFFFGKENDWKVKVGRFEAYDMFPLNQDTFVEHSGNTANDLYDDGSGYIYMMKEGRGRSNAGGNFLVSKQLDNWYFELNTLLEDGTSLYNDGNYHGRDMEQQKNVAYLRPVIAWSPTEEFTVSAAMEANVVNNAYGYTDSKGNFVDQSDRTGYGMSMTWNGLKTDPENGIVVNLNTAYLDANNEKDFTAGINALWKRFELGYIYAHNKIDEFSGVVCDNDCWIDDEGTYNIHTIHASYQFANVMDMENFNIYLGTYYSILDSDGDKIHGDDSDDRYGARVRFKYFF
>CP025716.1|AUQ39805.1|4344138_4344801_+|hypothetical-protein
MNFIILFINKTRVVALTPALQPIDGVAVSYIDAAVALGNTINEMDKYYIQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLTELKNIEEREGKTFHYYSLAVMISAKQINNLISQDKFDAEAAMKKVSELETLVAQVKEADKSGMNFSFINSAGQYQLEAKKYVRRIRDKVPYSDWDKEQLQDANSSWMAEDSFPESIMRVQRNGR
>CP025716.1|AUQ39804.1|4343255_4344089_+|sulfurtransferase-FdhD
MKKTQQKEIENVTNITGVRQIELWRHDDLQHPRLDEVAEEVPVALVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSSRRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDFQPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSSRASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLSN
>CP025716.1|AUQ39803.1|4343065_4343320_+|hypothetical-protein
MLLVSTLSRPIYIRLLRVQGVGVIFLCGRGRKGPELAQFPSIQEGFVTEYHNVGVCVLIWLRESEKNTAKRNRKCDKYHRCSSN
>CP025716.1|AUQ39802.1|4339096_4339999_-|formate-dehydrogenase-O-iron-sulfur-subunit
MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKACQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMHCSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKCTLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAGVGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHYVGVGPNRADEEENNLHEEKDEERK
>CP025716.1|AUQ39801.1|4338464_4339100_-|formate-dehydrogenase-cytochrome-b556(fdo)subunit
MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLMQIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVGDTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVALIVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE
>CP025716.1|AUQ39800.1|4337538_4338468_-|formate-dehydrogenase-accessory-protein-FdhE
MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLRELAENNPLGDYLRFAALIAHAQEVVLYDHPLEMDLTTRIKEASAQGKPPLDIHVLPRDKHWQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFIWAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLCETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAVADDLASLVLDARMEQEGYARSSINPFLFPGEGE
>CP025716.1|AUQ39799.1|4337111_4337324_+|CopG-family-transcriptional-regulator
MNTVFLHLSEEAIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQRGETVVVDDQCKEHKE
>CP025716.1|AUQ39809.1|4347979_4349239_-|L-rhamnose-isomerase
MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDDVSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESDTPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHADDRIRQFWIDHCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNPAHHIDAVESKLFGIGAESYTVGSNEFYLGYATSRQTALCLDAGHFHPTEVISDKISAAMLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINRIAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPWQAVWEMYCQRHDTPAGSEWLENVRTYEKEILSRRG
>CP025716.1|AUQ39810.1|4349235_4350705_-|rhamnulokinase
MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHSQNGYVTWNVDRLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAYRDSRTNGLMAQAQQQLGKRDIYQRSGIQFLPFNTIYQLRALTEQQPELIPHIAHALLIPDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIGHWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTALAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINPNDDRFINPDEMCSEIQAACRETAQPIPESDAELARCIFDSLALLYADVLHELAQLRGEDFSQLHIVGGGCQNALLNQLCADACGIRVIAGPVEASTLGNIGIQLMTLDELNNVDDFRQVVSTTANLTTFTPNPDSEIAHYVAQIHSTRQTKELCA
>CP025716.1|AUQ39811.1|4350783_4350933_+|hypothetical-protein
MGHWQPGKDERDDVHNLLHCGDVMLTAFPENSRCILKNRRFLRGFPSKI
>CP025716.1|AUQ39812.1|4350992_4351829_+|transcriptional-activator-RhaS
MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHGTGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLLPQEQDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKSSLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQRYLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGFLQ
>CP025716.1|AUQ39813.1|4351812_4352751_+|HTH-type-transcriptional-activator-RhaR
MVFCNNANLLNVFVRHIANNQLRSLAEVATVAHQLKLLKDDFFASDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADDKHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVIGQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAASLKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISDISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD
>CP025716.1|AUQ39814.1|4352747_4353782_-|rhamnose/proton-symporter-RhaT
MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIVSWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMGIGIAIGITLIVGTLMTPIINGNFDVLINTEGGRMTLLGVLVALIGVGIVTRAGQLKERKMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYVVIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFYAWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVAANIVGIGMAN
>CP025716.1|AUQ39815.1|4353746_4353914_+|hypothetical-protein
MPKYPHRNRVTHLLILIIFSSRHISDEMSVKIELSINLSPVAAAADLLAITALSG
>CP025716.1|AUQ39816.1|4354067_4354688_+|superoxide-dismutase---Mn
MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALENLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAAIERDFGSVDNFKAEFEKAAASRFGSGWAWLVQKGDKLAVVSTANQDSPLMGEAISGASGFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK
>CP025716.1|AUQ39817.1|4354716_4354845_-|hypothetical-protein
MIETTSIETLFYFYRIIVFILKLITKKPPPLAMVHFLSCNAA
>CP025716.1|AUQ39818.1|4354947_4355931_+|2-keto-3-deoxygluconate-permease
MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMITGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGTAGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTVIAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEMVPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK

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Crispr_ID: CP025716_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025716_7

4761467-4761606

Orphan

Consensus_repeat	Method
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025716_7

>merge|CP025716|7|4761467-4761606|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACAGCCTTGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

>CP025716|7|6|4761467-4761606|CRISPRCasFinder
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA	GCCTTGCCTGATGCGACGCTGTCGCGTCTCATCAGGCCTACGAGTTCAGTGC
TGTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAATAACA

Protein	Signature genes	Signature genes Name	Protein_function
CP025716.1\|AUQ40194.1\|4769772_4770537_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
CP025716.1\|AUQ40178.1\|4751027_4751972_-\|carbamate-kinase	unknown	unknown	gnl\|CDD\|183466
CP025716.1\|AUQ40189.1\|4763400_4764501_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
CP025716.1\|AUQ40180.1\|4753290_4753425_-\|hypothetical-protein	unknown	unknown	unknown
CP025716.1\|AUQ40184.1\|4756136_4756640_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP025716.1\|AUQ40195.1\|4770560_4771592_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
CP025716.1\|AUQ40193.1\|4768388_4769708_-\|fructuronate-transporter	unknown	unknown	gnl\|CDD\|129873
CP025716.1\|AUQ40190.1\|4764500_4765583_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
CP025716.1\|AUQ40192.1\|4767323_4768322_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|380489
CP025716.1\|AUQ40183.1\|4755543_4755960_+\|RNase-E-inhibitor-protein	unknown	unknown	gnl\|CDD\|236876
CP025716.1\|AUQ40196.1\|4771808_4772372_+\|D-gluconate-kinase	unknown	unknown	gnl\|CDD\|182097
CP025716.1\|AUQ40179.1\|4751982_4753203_-\|arginine-deiminase	unknown	unknown	gnl\|CDD\|234949
CP025716.1\|AUQ40186.1\|4758066_4760922_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
CP025716.1\|AUQ40185.1\|4756832_4758020_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
CP025716.1\|AUQ40191.1\|4765743_4767246_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
CP025716.1\|AUQ40187.1\|4760921_4761365_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
CP025716.1\|AUQ40181.1\|4753880_4754333_+\|YhcH/YjgK/YiaL-family-protein	unknown	unknown	gnl\|CDD\|225345
CP025716.1\|AUQ40197.1\|4772375_4773395_-\|NAD(P)-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176186
CP025716.1\|AUQ40188.1\|4761622_4763134_-\|cytosol-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
CP025716.1\|AUQ40182.1\|4754377_4755382_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587

Protein	Function_ID	Function_description	E-value
CP025716.1\|AUQ40194.1\|4769772_4770537_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
CP025716.1\|AUQ40178.1\|4751027_4751972_-\|carbamate-kinase	gnl\|CDD\|183466	PRK12354, PRK12354, carbamate kinase; Reviewed.	0
CP025716.1\|AUQ40193.1\|4768388_4769708_-\|fructuronate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
CP025716.1\|AUQ40181.1\|4753880_4754333_+\|YhcH/YjgK/YiaL-family-protein	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.2775e-64
CP025716.1\|AUQ40184.1\|4756136_4756640_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.51706e-18
CP025716.1\|AUQ40195.1\|4770560_4771592_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
CP025716.1\|AUQ40196.1\|4771808_4772372_+\|D-gluconate-kinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	2.59086e-125
CP025716.1\|AUQ40190.1\|4764500_4765583_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
CP025716.1\|AUQ40192.1\|4767323_4768322_-\|transcriptional-regulator	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	3.35057e-107
CP025716.1\|AUQ40183.1\|4755543_4755960_+\|RNase-E-inhibitor-protein	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	8.18116e-69
CP025716.1\|AUQ40179.1\|4751982_4753203_-\|arginine-deiminase	gnl\|CDD\|234949	PRK01388, PRK01388, arginine deiminase; Provisional.	0
CP025716.1\|AUQ40186.1\|4758066_4760922_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
CP025716.1\|AUQ40185.1\|4756832_4758020_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	6.82189e-106
CP025716.1\|AUQ40191.1\|4765743_4767246_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
CP025716.1\|AUQ40187.1\|4760921_4761365_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
CP025716.1\|AUQ40189.1\|4763400_4764501_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
CP025716.1\|AUQ40197.1\|4772375_4773395_-\|NAD(P)-dependent-alcohol-dehydrogenase	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.98969e-169
CP025716.1\|AUQ40188.1\|4761622_4763134_-\|cytosol-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
CP025716.1\|AUQ40182.1\|4754377_4755382_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0

>CP025716.1|AUQ40187.1|4760921_4761365_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>CP025716.1|AUQ40186.1|4758066_4760922_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>CP025716.1|AUQ40185.1|4756832_4758020_+|DUF898-domain-containing-protein
MNDVNIGKDNSRHSFVFTGKGGEYFLICLVSFLLTIITLGIYGPWALIKCRRYIYQHVTLKGQPFSYKGTGGAIFVSMLLIVVVYLLSISCFAGQHFALGLFLFALLICGIPCMAVKSLQYQANMTSLNDIRFGFNCSMMRAWWVMLGLPVLLALVFWFALYLIAQVTTSIGGLFFNLVALSLLSAIGLGVVHGITYSKWMPLLGNNATFGIHKFSIQVNVKECIKGCMLAILTMVPFIIVIGIMIAPVFQQLMMMTMLGRSDAGSEFVLQYYPQIMASYFLYFVAILVFASYLYVTLRNLFLNNLTLANGTIRFHSSVTAIGMLLRMLAVLMGSSITCGLAYPWLKMWMVSWIANNTHVQGDLDSLELTNDDKPQDSGSLMWISRGIMPYVPFI
>CP025716.1|AUQ40184.1|4756136_4756640_-|N-acetyltransferase
MNVVASPALRLRKLTVADNPAIAHVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLTGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLRKL
>CP025716.1|AUQ40183.1|4755543_4755960_+|RNase-E-inhibitor-protein
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGIRH
>CP025716.1|AUQ40182.1|4754377_4755382_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEARLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVAECSALAQKHGGKITLTEDIASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSKMMALTGNSQVKFLHCLPAFHDEQTTLGKKMAAEFGLYGGMEVTDEVFESPASIVFDQAENRMHTIKAVMVATLAK
>CP025716.1|AUQ40181.1|4753880_4754333_+|YhcH/YjgK/YiaL-family-protein
MIVGNIHHLQSWLPEELREAIEYIKSHVSDETAKGKHAIDGDRLFYLISEDTTEPGELRRAEYHARYLDIQIVLKGQEGMTFSTQPAGVPETDWLADKDIAFIGQGIDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKLLKA
>CP025716.1|AUQ40180.1|4753290_4753425_-|hypothetical-protein
MHYRILFLYHLSEPHQILSTSIINITAGVKAVTFSGRNKLNHCI
>CP025716.1|AUQ40179.1|4751982_4753203_-|arginine-deiminase
MEKHYVGSEIGQLCSVMLHRPNLSLKRLTPSNCQELLFDDVLSVERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDIPEAKSWLLETQISDYRLGPTFATDVRTWLAEMSHRDLARHLSGGLTYSEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTSCWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGEFIKYFGDENINYDHATLEGGDVLVIGRGAVLIGMSERTTPQGVEFLAQALFKHRQAERVIAVELPKHRYCMHLDTVMTHIDIDTFSVYPEVVRPDVNCWTLTPDGHGGLKRTQESTLLHAIEKALGIDQVRLITTGGDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRGGARCMSCPLHRDGI
>CP025716.1|AUQ40178.1|4751027_4751972_-|carbamate-kinase
MENKPTLVIALGGNALLKRGEPLEAEIQRKNIDLAAKTIAQLTQHWRVVLVHGNGPQVGLLALQNSAYAHVAPYPLDILGAESQGMIGYMLQQALKNQLPQREISVLLTQVEVDANDPAFSNPTKYIGPIYDHAQTQVLQAEKGWVFKADGHSFRRVVPSPQPKRIVERDAIQTLIAHDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQIHADALLILTDADAVYLDWGKPTQRPLAQVTPELLNEMQFDAGSMGPKVTACAKFVSQCRGIAGIGSLADGPEILAGDKGTLIRLDTPITTLDPFL
>CP025716.1|AUQ40188.1|4761622_4763134_-|cytosol-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>CP025716.1|AUQ40189.1|4763400_4764501_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>CP025716.1|AUQ40190.1|4764500_4765583_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>CP025716.1|AUQ40191.1|4765743_4767246_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPRLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGVQASTEQQNNPAVKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>CP025716.1|AUQ40192.1|4767323_4768322_-|transcriptional-regulator
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTIIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERKLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRTAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>CP025716.1|AUQ40193.1|4768388_4769708_-|fructuronate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>CP025716.1|AUQ40194.1|4769772_4770537_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVKKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>CP025716.1|AUQ40195.1|4770560_4771592_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>CP025716.1|AUQ40196.1|4771808_4772372_+|D-gluconate-kinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQDDEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>CP025716.1|AUQ40197.1|4772375_4773395_-|NAD(P)-dependent-alcohol-dehydrogenase
MSMIKSYAAKEAGGELEVYEYDPGELKPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	271-327	5	0.912
CP025716_3	3.2\|934257\|32\|CP025716\|CRISPRCasFinder	934257-934288	32	NC_015163	Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence	83332-83363	8	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	9	0.812
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	9	0.812
CP025716_5	5.2\|4287356\|56\|CP025716\|PILER-CR	4287356-4287411	56	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14043	9	0.839
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	11	0.771
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	11	0.771
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	11	0.771
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41414-41461	11	0.771
CP025716_5	5.2\|4287356\|56\|CP025716\|PILER-CR	4287356-4287411	56	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87116-87171	11	0.804
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12113-12164	11	0.788
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	272-323	11	0.788
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31252-31303	11	0.788
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	12	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	12	0.75
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30155-30211	12	0.789
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	13	0.729
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	13	0.729
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-99	13	0.772
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-98	13	0.772
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18328-18384	13	0.772
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-98	13	0.772
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-98	13	0.772
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208982-209033	13	0.75
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219476-219527	13	0.75
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210310-210361	13	0.75
CP025716_7	7.1\|4761511\|52\|CP025716\|CRISPRCasFinder	4761511-4761562	52	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191265-191316	13	0.75
CP025716_2	2.1\|803852\|48\|CP025716\|CRISPRCasFinder	803852-803899	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	14	0.708
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87115-87171	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229227-229283	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229328-229384	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229429-229485	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4170	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239721-239777	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239822-239878	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239923-239979	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4169	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230633-230689	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230734-230790	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230835-230891	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4169	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211603-211659	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211704-211760	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211805-211861	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4169	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7448	14	0.754
CP025716_6	6.1\|4347884\|57\|CP025716\|CRISPRCasFinder	4347884-4347940	57	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84272	14	0.754
CP025716_5	5.1\|4287257\|63\|CP025716\|PILER-CR	4287257-4287319	63	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87115-87177	15	0.762

1. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 5, identity: 0.912

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac-aactattgccgacct	CRISPR spacer
atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaaccgttaccgact-	Protospacer
****************************************** ***..**.*****.

2. spacer 3.2|934257|32|CP025716|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgccgcggatcctgtctgccaataatgacaa	CRISPR spacer
ctggacggcatcctgtctgccaattttgacaa	Protospacer
.**    * ***************  ******

3. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.812

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* **************.*   *.*

4. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 9, identity: 0.812

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggtaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *******.*  . .

5. spacer 5.2|4287356|56|CP025716|PILER-CR matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.839

tacag-tgcccgatgcgacgctgccgcgtcttatcgggcctacaaa-agttctgaacc	CRISPR spacer
-acggatgcccgatgcgacgctggcgcgtcttatcgggcctacaaacggccccgaat-	Protospacer
 **.* ***************** ********************** .*..*.***.

6. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* **************.*  *.**

7. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* **************.*  *.**

8. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  **************.*    **

9. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc-	CRISPR spacer
gttttgtaggtctgataagacgcgccagcgtcgcatcagac-atcagca	Protospacer
.  ..*****.************** *************.. * ****

10. spacer 5.2|4287356|56|CP025716|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.804

tacagtgcccgatgcgacgctgccgcgtcttatcgggcctacaaaagttctgaacc----	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaa----tcaatcgctt	Protospacer
.**..****.************************.***********    * **.*

11. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc	CRISPR spacer
tcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgagtcgcccgt	Protospacer
 *  ***************** *******.***************.   .*.

12. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc-	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa-ccgttacc	Protospacer
 *  *************************.***********.*. .*. *.*

13. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.788

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc--	CRISPR spacer
tcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacag--ccgttgcca	Protospacer
 *  *************************.***********..  .*. ***

14. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

15. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

16. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. **************.*  ..

17. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

18. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

19. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. **************.*  ..

20. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* **************.*  ..*.

21. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

22. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

23. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. **************.*  ..

24. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

25. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. **************.*  ..

26. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. **************.*  ..

27. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  **************.*   * .

28. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.789

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa-ctattgccgacct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaatctgcacccgaac-	Protospacer
 ...****************** ************ ******** **..  **** *

29. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* **************.*  ..

30. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

31. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

32. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. **************.*  ...

33. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* **************.*  ..

34. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

35. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

36. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. **************.*  ...

37. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* **************.*  ..

38. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

39. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

40. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. **************.*  ...

41. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* **************.*  ..

42. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

43. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* **************.*  ..

44. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. **************.*  ...

45. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  **************.*   * .

46. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

47. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

48. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

49. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

50. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.772

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaaatctgtacgcgaa--	Protospacer
....****************** ************ ********  **.*   ***

51. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

52. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

53. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

54. spacer 7.1|4761511|52|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.75

gccttgcctgatgcgacgctgtcgcgtctcatcaggcctacgagttcagtgc----	CRISPR spacer
cagatgcctgatgcgacgctgacgcgtcttatcaggcctac----ccactgttttt	Protospacer
    ***************** *******.***********    .** **.

55. spacer 2.1|803852|48|CP025716|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 14, identity: 0.708

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggtaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. **************.    * .

56. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaaatcaatcgcttt	Protospacer
  *.******************.*********************   . ..** ..*

57. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

58. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

59. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

60. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

61. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

62. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

63. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

64. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

65. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

66. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

67. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

68. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

69. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

70. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattctcgcgccac	Protospacer
.. .*****************. ********************* * .*  ** * .

71. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaactattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaattcccgcgccat	Protospacer
.. .*****************. ********************* * ..  ** * *

72. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaa--ctattgccgacct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatcatgcctacaaacttgtgcctgaa--	Protospacer
.. .****************** ************ ********  .*.*  *.**

73. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**

74. spacer 6.1|4347884|57|CP025716|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 14, identity: 0.754

atcaatgcctgatgcgacgctgtcgcgtcttatcaggcctac--aactattgccgacct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaaactgcactcaac--	Protospacer
 . .****************** ************ ******  ****..  .*.**

75. spacer 5.1|4287257|63|CP025716|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.762

ttggtgcacgatgcctgatgcgacgctggcgcgtcttatcaggcctacattggtgccgga	CRISPR spacer
tcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctaca--------aaa	Protospacer
*.************************** ********************        ..*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

200294 : 273522

uncultured_Mediterranean_phage(10.0%)

tRNA,plate,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ35834.1\|200294_201719_+\|protease	serine endoprotease DegQ	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-26	28.8
AUQ35835.1\|201873_203031_+	CdaR family transcriptional regulator	NA	NA	NA	NA
AUQ35836.1\|203084_203471_-	hypothetical protein	NA	NA	NA	NA
AUQ35837.1\|203780_204605_-	2,3,4,5-tetrahydropyridine-2, 6-dicarboxylateN-succinyltransferase	NA	NA	NA	NA
AUQ35838.1\|204635_207308_-	bifunctionaluridylyltransferase/uridylyl- removing protein	NA	NA	NA	NA
AUQ35839.1\|207369_208164_-	methionine aminopeptidase	NA	NA	NA	NA
AUQ35840.1\|208531_209257_+	30S ribosomal protein S2	NA	NA	NA	NA
AUQ35841.1\|209391_210243_+	elongation factor Ts	NA	NA	NA	NA
AUQ35842.1\|210389_211115_+	UMP kinase	NA	NA	NA	NA
AUQ35843.1\|211264_211822_+	ribosome-recycling factor	NA	NA	NA	NA
AUQ35844.1\|211913_213110_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
AUQ35845.1\|213298_214057_+	(2E,6E)-farnesyl-diphosphate-specificditrans, polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	7.7e-27	44.4
AUQ35846.1\|214069_214927_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
AUQ35847.1\|214938_216291_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
AUQ35848.1\|216320_218753_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
AUQ35849.1\|218874_219360_+	chaperone protein Skp	NA	NA	NA	NA
AUQ35850.1\|219363_220389_+	UDP-3-O-(3-hydroxymyristoyl)glucosamineN- acyltransferase	NA	NA	NA	NA
AUQ35851.1\|220493_220949_+	beta-hydroxyacyl-ACP dehydratase	NA	NA	NA	NA
AUQ35852.1\|220952_221741_+	acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase	NA	NA	NA	NA
AUQ35853.1\|221740_222889_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
AUQ35854.1\|222885_223482_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.3e-26	40.0
AUQ35855.1\|223518_227001_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	3.7e-209	36.8
AUQ35856.1\|227013_227973_+	acetyl-CoA carboxylase carboxyl transferasesubunit alpha	NA	NA	NA	NA
AUQ35857.1\|228070_230212_+	lysine decarboxylase	NA	NA	NA	NA
AUQ35858.1\|230268_230658_+	VOC family protein	NA	NA	NA	NA
AUQ35859.1\|230722_232036_+\|tRNA	tRNA(Ile)-lysidine synthetase	NA	NA	NA	NA
AUQ35860.1\|233518_234343_-	hypothetical protein	NA	NA	NA	NA
AUQ35861.1\|234395_236114_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
AUQ35862.1\|236224_236932_-\|tRNA	tRNA(N6-threonylcarbamoyladenosine(37)-N6)- methyltransferaseTrmO	NA	NA	NA	NA
AUQ35863.1\|236928_237333_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
AUQ35864.1\|237450_238266_-	methionine ABC transporter substrate-bindingprotein MetQ	NA	NA	NA	NA
AUQ35865.1\|238305_238959_-	methionine ABC transporter	NA	NA	NA	NA
AUQ35866.1\|238951_239983_-	methionine import ATP-binding protein MetN	G9BWD6	Planktothrix_phage	7.2e-36	40.2
AUQ35867.1\|240170_240743_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate7-phosphatase	NA	NA	NA	NA
AUQ35868.1\|246412_247216_+	2,5-didehydrogluconate reductase DkgB	A0A1V0SDE7	Indivirus	6.0e-38	35.8
AUQ35869.1\|247212_248127_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUQ35870.1\|248367_249168_+	EEP domain-containing protein	NA	NA	NA	NA
AUQ35871.1\|249245_250016_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUQ35872.1\|250064_251423_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
AUQ35873.1\|251494_252250_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AUQ35874.1\|252283_253006_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUQ35875.1\|253002_253470_-	ribonuclease H	J9Q745	Salmonella_phage	8.0e-51	58.7
AUQ35876.1\|253534_254266_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	5.8e-40	38.6
AUQ35877.1\|254803_255589_+	hypothetical protein	NA	NA	NA	NA
AUQ35878.1\|255928_256408_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
AUQ35879.1\|256425_257784_-	hypothetical protein	NA	NA	NA	NA
AUQ35880.1\|257794_261322_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AUQ35881.1\|261341_262850_-	type VI secretion system protein TssA	NA	NA	NA	NA
AUQ35882.1\|262788_263532_-	type VI secretion system-associated proteinTagO	NA	NA	NA	NA
AUQ35883.1\|263528_266291_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	3.6e-82	31.1
AUQ35884.1\|266300_267065_-	membrane protein	NA	NA	NA	NA
AUQ35885.1\|267069_268416_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AUQ35886.1\|268418_268943_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AUQ35887.1\|268939_270220_-	type VI secretion system-associated FHA domainprotein TagH	NA	NA	NA	NA
AUQ35888.1\|270236_271286_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUQ35889.1\|271249_273109_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUQ35890.1\|273096_273522_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

325236 : 389647

Enterobacteria_phage(23.08%)

tRNA,integrase,transposase,protease

attL 347986:348002|attR 386225:386241

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ35940.1\|325236_325923_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
AUQ35941.1\|326017_326476_-	hypothetical protein	NA	NA	NA	NA
AUQ35942.1\|326540_326732_+	hypothetical protein	NA	NA	NA	NA
AUQ35943.1\|327161_327278_-	hypothetical protein	NA	NA	NA	NA
AUQ35944.1\|327687_328257_+	hypothetical protein	NA	NA	NA	NA
AUQ35945.1\|328531_328753_-	Major pilus subunit operon regulatory protein	NA	NA	NA	NA
AUQ35946.1\|329171_329501_+	major pilus subunit operon regulatory proteinPapB	NA	NA	NA	NA
AUQ35947.1\|329874_330420_+	S-fimbrial protein subunit SfaA	NA	NA	NA	NA
AUQ35948.1\|330505_331030_+	type 1 fimbrial protein	NA	NA	NA	NA
AUQ35949.1\|331070_331766_+	molecular chaperone FimC	NA	NA	NA	NA
AUQ35950.1\|331836_334467_+	fimbrial biogenesis outer membrane usherprotein	NA	NA	NA	NA
AUQ35951.1\|334479_335007_+	S-fimbrial protein subunit SfaG	NA	NA	NA	NA
AUQ35952.1\|335028_335520_+	S-fimbrial adhesin protein SfaS	NA	NA	NA	NA
AUQ35953.1\|335512_336481_+	fimbrial protein	NA	NA	NA	NA
AUQ35954.1\|336536_336665_+	hypothetical protein	NA	NA	NA	NA
AUQ35955.1\|336784_337525_+	EAL domain-containing protein	NA	NA	NA	NA
AUQ35956.1\|337671_338223_+	transcriptional regulator	NA	NA	NA	NA
AUQ35957.1\|338716_339535_+	Outer Membrane Siderophore Receptor IroN	NA	NA	NA	NA
AUQ35958.1\|341151_342330_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUQ35959.1\|342374_343331_-	alpha/beta hydrolase	NA	NA	NA	NA
AUQ35960.1\|343415_344645_-	esterase family protein	NA	NA	NA	NA
AUQ35961.1\|344748_348276_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	6.9e-46	31.9
347986:348002	attL	NA	NA	NA	NA
AUQ35962.1\|349669_349843_-	ABC transporter protein IroC	NA	NA	NA	NA
AUQ35963.1\|349982_351098_-	glycosyl transferase	NA	NA	NA	NA
AUQ35964.1\|351635_351935_+	hypothetical protein	NA	NA	NA	NA
AUQ35965.1\|352365_352521_-	hypothetical protein	NA	NA	NA	NA
AUQ35966.1\|353113_353227_+	hypothetical protein	NA	NA	NA	NA
AUQ35967.1\|354114_354231_+	hypothetical protein	NA	NA	NA	NA
AUQ35968.1\|355623_355842_+	hypothetical protein	NA	NA	NA	NA
AUQ35969.1\|355927_357898_+	ligand-gated channel	NA	NA	NA	NA
AUQ35970.1\|357916_358708_+	DUF4198 domain-containing protein	NA	NA	NA	NA
AUQ35971.1\|358971_360171_+	hypothetical protein	NA	NA	NA	NA
AUQ35972.1\|360277_360460_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.1e-19	67.2
AUQ35973.1\|362054_362672_-\|transposase	IS66 family transposase	S5VLC8	Leptospira_phage	1.1e-07	30.1
AUQ35974.1\|362691_363039_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	1.3e-45	75.7
AUQ35975.1\|363035_363398_-	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.4e-23	71.1
AUQ35976.1\|363532_363718_-	hypothetical protein	NA	NA	NA	NA
AUQ35977.1\|364184_365072_-	ArgP/LysG family DNA-binding transcriptionalregulator	NA	NA	NA	NA
AUQ35978.1\|365118_366615_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.4e-88	37.1
AUQ35979.1\|366908_367619_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUQ35980.1\|367822_369949_-	lysine decarboxylase	NA	NA	NA	NA
AUQ35981.1\|369979_371290_-	arginine:agmatine antiporter	NA	NA	NA	NA
AUQ35982.1\|371676_372039_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	2.4e-31	89.5
AUQ35983.1\|372339_372522_-	hypothetical protein	NA	NA	NA	NA
AUQ35984.1\|372852_373725_+	hypothetical protein	NA	NA	NA	NA
AUQ35985.1\|377507_378326_+	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	9.7e-44	37.3
AUQ35986.1\|378417_378903_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	3.1e-13	35.0
AUQ35987.1\|378948_379395_+	hypothetical protein	NA	NA	NA	NA
AUQ35988.1\|379463_379685_+	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
AUQ35989.1\|379684_379798_+	hypothetical protein	NA	NA	NA	NA
AUQ35990.1\|379847_380216_+	type IV toxin-antitoxin system YeeU familyantitoxin	NA	NA	NA	NA
AUQ35991.1\|380305_380683_+	toxin	NA	NA	NA	NA
AUQ35992.1\|380679_381168_+	hypothetical protein	NA	NA	NA	NA
AUQ35993.1\|381179_381377_+	DUF957 domain-containing protein	NA	NA	NA	NA
AUQ35994.1\|381380_381506_-	hypothetical protein	NA	NA	NA	NA
AUQ35995.1\|381563_382316_+	DUF4942 domain-containing protein	NA	NA	NA	NA
AUQ35996.1\|382408_383728_-\|integrase	site-specific integrase	A0A2H4J5F8	uncultured_Caudovirales_phage	1.5e-17	23.4
AUQ35997.1\|384093_384432_+\|integrase	integrase	E5AGD0	Erwinia_phage	5.6e-22	48.6
AUQ35998.1\|384866_385391_-	transcriptional regulator	NA	NA	NA	NA
AUQ35999.1\|385516_389647_-\|protease	hemoglobin-binding protease hbp autotransporter	Q9LA54	Enterobacteria_phage	3.3e-281	40.7
386225:386241	attR	NA	NA	NA	NA

DBSCAN-SWA_3

917931 : 925654

uncultured_Caudovirales_phage(50.0%)

integrase

attL 911918:911932|attR 924258:924272

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
911918:911932	attL	NA	NA	NA	NA
AUQ36501.1\|917931_919878_+	macrolide ABC transporter permease/ATP-bindingprotein MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
AUQ36502.1\|919950_920175_-	cold-shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
AUQ36503.1\|920579_921818_+\|integrase	integrase	A0A2H4JB45	uncultured_Caudovirales_phage	2.0e-125	52.2
AUQ36504.1\|922227_922437_+	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	2.2e-16	67.9
AUQ36505.1\|922575_922755_-	hypothetical protein	A0A2H4JB52	uncultured_Caudovirales_phage	1.2e-10	58.6
AUQ36506.1\|922888_923086_+	hypothetical protein	NA	NA	NA	NA
AUQ36507.1\|923078_923390_+	hypothetical protein	NA	NA	NA	NA
AUQ36508.1\|923382_923610_+	hypothetical protein	NA	NA	NA	NA
AUQ36509.1\|923615_923903_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AUQ36510.1\|923899_925654_+	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-93	40.8
924258:924272	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2369245 : 2379528

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ37891.1\|2369245_2373004_-	AIDA-I family autotransporter YfaL	A0A2L1IV18	Escherichia_phage	1.3e-21	27.7
AUQ37892.1\|2373427_2373640_-	hypothetical protein	Q1MVF2	Enterobacteria_phage	6.2e-11	77.5
AUQ37893.1\|2373685_2375971_+	ribonucleoside-diphosphate reductase subunitalpha	A0A2D1GNB1	Pseudoalteromonas_phage	1.9e-283	63.6
AUQ37894.1\|2376160_2377291_+	ribonucleotide-diphosphate reductase subunitbeta	G9IAA3	Pseudomonas_phage	2.5e-175	78.9
AUQ37895.1\|2377290_2377545_+	ferredoxin	G9IAA2	Pseudomonas_phage	2.6e-24	73.1
AUQ37896.1\|2377598_2378249_-	hypothetical protein	NA	NA	NA	NA
AUQ37897.1\|2378451_2379528_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	5.1e-08	46.0

DBSCAN-SWA_5

2699963 : 2742479

Salmonella_phage(54.17%)

tail,terminase,head,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ38189.1\|2699963_2700230_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.7e-34	80.7
AUQ38190.1\|2700288_2700936_+	hypothetical protein	NA	NA	NA	NA
AUQ38191.1\|2701016_2701571_-	recombinase family protein	A0A1S6L009	Salmonella_phage	3.7e-87	87.3
AUQ38192.1\|2701600_2702095_+	hypothetical protein	K7PH60	Enterobacterial_phage	1.1e-79	92.8
AUQ38193.1\|2702094_2702688_+\|tail	tail assembly protein	Q9MCR5	Enterobacteria_phage	4.5e-59	64.9
AUQ38194.1\|2702659_2703100_-\|tail	tail assembly chaperone	A0A0F7LDZ0	Escherichia_phage	5.6e-54	69.7
AUQ38195.1\|2703126_2703816_-	hypothetical protein	A0A0M3ULD8	Salmonella_phage	3.7e-28	70.0
AUQ38196.1\|2703815_2704496_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	3.4e-103	78.8
AUQ38197.1\|2704492_2705692_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	1.7e-185	83.9
AUQ38198.1\|2705691_2706045_-	hypothetical protein	A0A0M4R339	Salmonella_phage	1.5e-54	88.9
AUQ38199.1\|2706044_2706797_-	hypothetical protein	A0A0M5M1K7	Salmonella_phage	2.5e-86	65.9
AUQ38200.1\|2706856_2707252_-	hypothetical protein	NA	NA	NA	NA
AUQ38201.1\|2707238_2708012_-	hypothetical protein	NA	NA	NA	NA
AUQ38202.1\|2708107_2708440_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.1e-22	70.5
AUQ38203.1\|2708439_2709504_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	3.2e-156	81.1
AUQ38204.1\|2709506_2709809_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	6.3e-49	91.0
AUQ38205.1\|2709808_2710396_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	3.4e-83	88.0
AUQ38206.1\|2710395_2712381_-	hypothetical protein	A0A0M4REK7	Salmonella_phage	3.8e-174	53.3
AUQ38207.1\|2712558_2713011_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	6.1e-56	72.7
AUQ38208.1\|2713014_2713455_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	7.0e-57	75.3
AUQ38209.1\|2713465_2714611_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	5.2e-160	73.2
AUQ38210.1\|2714614_2715178_-	hypothetical protein	A0A0M4R331	Salmonella_phage	1.3e-79	75.7
AUQ38211.1\|2715152_2715542_-	hypothetical protein	A0A0M3ULK0	Salmonella_phage	5.6e-66	95.3
AUQ38212.1\|2715528_2716083_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.7e-79	83.2
AUQ38213.1\|2716079_2716487_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	4.3e-69	94.8
AUQ38214.1\|2716452_2716674_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	7.7e-12	68.6
AUQ38215.1\|2716715_2717657_-	DUF2184 domain-containing protein	A0A0M3ULD3	Salmonella_phage	3.2e-155	86.3
AUQ38216.1\|2717668_2718175_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	1.1e-69	79.3
AUQ38217.1\|2718178_2719399_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.2e-200	88.0
AUQ38218.1\|2719413_2719851_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	5.0e-71	89.7
AUQ38219.1\|2720038_2721505_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	6.7e-261	91.8
AUQ38220.1\|2721504_2723127_-	hypothetical protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	95.4
AUQ38221.1\|2723129_2723702_-\|terminase	terminase small subunit	A0A2H4J480	uncultured_Caudovirales_phage	6.1e-61	69.6
AUQ38222.1\|2723763_2724288_-	hypothetical protein	K7P6W1	Enterobacteria_phage	4.5e-42	66.9
AUQ38223.1\|2724271_2724748_-	lysozyme	Q8SBE0	Shigella_phage	2.1e-86	96.2
AUQ38224.1\|2724751_2725093_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.8e-53	91.9
AUQ38225.1\|2725538_2725880_-	hypothetical protein	NA	NA	NA	NA
AUQ38226.1\|2725911_2726334_-	antitermination protein	Q8W638	Enterobacteria_phage	8.8e-41	63.3
AUQ38227.1\|2726615_2728808_-	replication protein	B6SCY1	Bacteriophage	1.2e-173	71.3
AUQ38228.1\|2728811_2729024_-	XRE family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	7.9e-06	42.9
AUQ38229.1\|2729144_2729768_+	DNA-binding protein	A0A1I9KG86	Aeromonas_phage	3.3e-36	44.8
AUQ38230.1\|2730401_2730551_+	hypothetical protein	NA	NA	NA	NA
AUQ38231.1\|2730547_2731450_+	hypothetical protein	Q3LZP9	Bacteriophage	6.1e-07	54.4
AUQ38232.1\|2731452_2732754_+	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	7.2e-134	56.4
AUQ38233.1\|2732769_2733318_+	DUF2815 domain-containing protein	Q775A5	Bordetella_phage	1.6e-66	65.9
AUQ38234.1\|2733369_2734008_+	hypothetical protein	H6WRY3	Salmonella_phage	3.9e-72	68.8
AUQ38235.1\|2734075_2734345_-	hypothetical protein	NA	NA	NA	NA
AUQ38236.1\|2734401_2736465_+	DNA polymerase	Q775A3	Bordetella_phage	8.7e-275	67.8
AUQ38237.1\|2736470_2736674_+	hypothetical protein	K7PLX1	Enterobacteria_phage	3.2e-12	55.4
AUQ38238.1\|2736679_2736901_+	hypothetical protein	NA	NA	NA	NA
AUQ38239.1\|2736890_2737373_+	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	3.6e-70	79.6
AUQ38240.1\|2737372_2737666_+	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	5.0e-27	68.2
AUQ38241.1\|2737638_2738667_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	7.1e-100	52.9
AUQ38242.1\|2738663_2738984_-	hypothetical protein	NA	NA	NA	NA
AUQ38243.1\|2739018_2740413_+	ATP-dependent helicase	Q3LZN8	Bacteriophage	7.3e-217	74.7
AUQ38244.1\|2740409_2740610_+	DNA-binding protein	NA	NA	NA	NA
AUQ38245.1\|2740606_2742004_-	recombinase	NA	NA	NA	NA
AUQ38246.1\|2742218_2742479_+	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.7e-18	54.7

DBSCAN-SWA_6

2880601 : 2887740

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ38392.1\|2880601_2883163_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
AUQ38393.1\|2883268_2883799_+	Serine/threonine protein phosphatase 2	A0A077SLQ6	Escherichia_phage	2.7e-39	46.5
AUQ38394.1\|2883974_2884742_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
AUQ38395.1\|2884937_2885846_+	oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
AUQ38396.1\|2885842_2887105_+	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
AUQ38397.1\|2887101_2887740_+	class II aldolase	A0A077SK32	Escherichia_phage	3.7e-83	75.0

DBSCAN-SWA_7

4067228 : 4078790

Enterobacteria_phage(88.89%)

integrase

attL 4067046:4067068|attR 4077680:4077702

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4067046:4067068	attL	NA	NA	NA	NA
AUQ39544.1\|4067228_4068416_+\|integrase	integrase	Q7M297	Enterobacteria_phage	1.5e-207	91.2
AUQ39545.1\|4068462_4068990_-	hypothetical protein	NA	NA	NA	NA
AUQ39546.1\|4068996_4070082_-	hypothetical protein	NA	NA	NA	NA
AUQ39547.1\|4070378_4070951_-	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	5.0e-95	96.8
AUQ39548.1\|4071024_4071525_-	transactivation protein	NA	NA	NA	NA
AUQ39549.1\|4071521_4072256_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-126	96.3
AUQ39550.1\|4072495_4072639_+	hypothetical protein	NA	NA	NA	NA
AUQ39551.1\|4072808_4073075_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
AUQ39552.1\|4073071_4073662_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	2.0e-59	89.6
AUQ39553.1\|4073654_4073942_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
AUQ39554.1\|4073934_4074390_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
AUQ39555.1\|4074525_4074846_+	hypothetical protein	NA	NA	NA	NA
AUQ39556.1\|4074860_4077194_+	DNA primase	Q7M2A8	Enterobacteria_phage	0.0e+00	99.0
AUQ39557.1\|4077171_4077381_+	hypothetical protein	NA	NA	NA	NA
AUQ39558.1\|4077752_4078790_+	2-hydroxyacid dehydrogenase	Q9JMN3	Wolbachia_phage	7.4e-73	43.6
4077680:4077702	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4830620 : 4879904

Escherichia_phage(40.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ40260.1\|4830620_4831124_-\|transposase	IS1 family transposase	Q71TF0	Escherichia_phage	1.5e-95	100.0
AUQ40261.1\|4831368_4832466_-	hypothetical protein	NA	NA	NA	NA
AUQ40262.1\|4832479_4835440_-	ATP-binding protein	A0A1B5FPD5	Escherichia_phage	3.9e-34	24.3
AUQ40263.1\|4835444_4836491_-	DNA (cytosine-5-)-methyltransferase	A0A0R6PG08	Moraxella_phage	2.0e-65	43.0
AUQ40264.1\|4836576_4836822_-	hypothetical protein	NA	NA	NA	NA
AUQ40265.1\|4837237_4837765_-	hypothetical protein	NA	NA	NA	NA
AUQ40266.1\|4837748_4838081_-	type VI secretion protein ImpA	NA	NA	NA	NA
AUQ40267.1\|4838073_4838343_-	hypothetical protein	NA	NA	NA	NA
AUQ40268.1\|4838385_4838637_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.4e-41	97.6
AUQ40269.1\|4838793_4839180_-	immunity protein CdiI	NA	NA	NA	NA
AUQ40270.1\|4839176_4848905_-	Contact-dependent inhibitor A	A0A0R6PJK4	Moraxella_phage	2.8e-28	33.5
AUQ40271.1\|4848917_4850684_-	ShlB/FhaC/HecB family hemolysinsecretion/activation protein	A0A0R6PI85	Moraxella_phage	2.0e-22	25.5
AUQ40272.1\|4851047_4851281_-	hypothetical protein	NA	NA	NA	NA
AUQ40273.1\|4851378_4852002_-	hypothetical protein	NA	NA	NA	NA
AUQ40274.1\|4852269_4852818_-	hypothetical protein	NA	NA	NA	NA
AUQ40275.1\|4852909_4853047_-	hypothetical protein	NA	NA	NA	NA
AUQ40276.1\|4853084_4853318_-	AlpA family transcriptional regulator	NA	NA	NA	NA
AUQ40277.1\|4853386_4853947_-	hypothetical protein	NA	NA	NA	NA
AUQ40278.1\|4854193_4854760_-	inovirus Gp2 family protein	NA	NA	NA	NA
AUQ40279.1\|4855870_4857199_-	D-serine dehydratase	NA	NA	NA	NA
AUQ40280.1\|4857216_4858554_-	D-serine transporter DsdX	NA	NA	NA	NA
AUQ40281.1\|4858771_4859716_+	DNA-binding transcriptional regulator DsdC	NA	NA	NA	NA
AUQ40282.1\|4860368_4860698_-	QacE family quaternary ammonium compound effluxSMR transporter	NA	NA	NA	NA
AUQ40283.1\|4860713_4861115_-	QacE family quaternary ammonium compound effluxSMR transporter	NA	NA	NA	NA
AUQ40284.1\|4861147_4861813_-	hypothetical protein	NA	NA	NA	NA
AUQ40285.1\|4861824_4862445_-	phosphate propanoyltransferase	NA	NA	NA	NA
AUQ40286.1\|4862441_4862906_-	microcompartment protein	NA	NA	NA	NA
AUQ40287.1\|4862917_4863865_-\|holin	choline TMA-lyase-activating enzyme	NA	NA	NA	NA
AUQ40288.1\|4863916_4867303_-\|holin	choline trimethylamine-lyase	A0A1S6UAD4	Serratia_phage	9.7e-05	45.0
AUQ40289.1\|4867329_4868484_-	alcohol dehydrogenase	NA	NA	NA	NA
AUQ40290.1\|4868499_4868757_-	ethanolamine utilization protein EutN	NA	NA	NA	NA
AUQ40291.1\|4868783_4870370_-	acetaldehyde dehydrogenase (acetylating)	NA	NA	NA	NA
AUQ40292.1\|4870423_4870702_-	BMC domain-containing protein	NA	NA	NA	NA
AUQ40293.1\|4870716_4871001_-	BMC domain-containing protein	NA	NA	NA	NA
AUQ40294.1\|4871018_4871297_-	BMC domain-containing protein	NA	NA	NA	NA
AUQ40295.1\|4871477_4871738_+	hypothetical protein	NA	NA	NA	NA
AUQ40296.1\|4871816_4872335_-	hypothetical protein	NA	NA	NA	NA
AUQ40297.1\|4872334_4873153_-	transcriptional regulator	NA	NA	NA	NA
AUQ40298.1\|4873175_4873754_-	TetR/AcrR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	3.4e-11	32.1
AUQ40299.1\|4875731_4876910_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
AUQ40300.1\|4876902_4878093_+	Na+/H+ antiporter NhaC	NA	NA	NA	NA
AUQ40301.1\|4878102_4878885_-\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	5.9e-139	99.6
AUQ40302.1\|4878881_4879904_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	6.0e-200	99.4

DBSCAN-SWA_9

4965490 : 5006412

Enterobacteria_phage(50.0%)

tail,integrase,portal,holin,lysis

attL 4965241:4965260|attR 5010365:5010384

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4965241:4965260	attL	NA	NA	NA	NA
AUQ40394.1\|4965490_4966705_+\|integrase	site-specific integrase	A0A291AWU1	Escherichia_phage	1.6e-236	99.3
AUQ40395.1\|4967080_4968076_-	hypothetical protein	NA	NA	NA	NA
AUQ40396.1\|4968449_4968644_-	DNA-binding protein	A5LH59	Enterobacteria_phage	2.5e-30	93.8
AUQ40397.1\|4968643_4969264_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	1.2e-118	95.6
AUQ40398.1\|4969263_4969626_-	hypothetical protein	U5P092	Shigella_phage	1.3e-64	95.8
AUQ40399.1\|4969616_4970153_-	HD family hydrolase	S5MW55	Escherichia_phage	7.4e-101	100.0
AUQ40400.1\|4970280_4971105_-	DUF2303 domain-containing protein	U5P439	Shigella_phage	6.6e-149	99.3
AUQ40401.1\|4971170_4971533_-	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
AUQ40402.1\|4971605_4971830_+	hypothetical protein	A0A291AWX8	Escherichia_phage	4.9e-14	66.2
AUQ40403.1\|4971738_4972029_+	hypothetical protein	U5P0J5	Shigella_phage	1.2e-41	96.2
AUQ40404.1\|4972001_4972514_+	hypothetical protein	NA	NA	NA	NA
AUQ40405.1\|4972829_4973522_-	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	7.3e-125	99.1
AUQ40406.1\|4973619_4973880_+	XRE family transcriptional regulator	S5FKP1	Shigella_phage	9.3e-41	98.8
AUQ40407.1\|4973872_4974424_+	hypothetical protein	K7PGU3	Enterobacteria_phage	1.1e-99	97.8
AUQ40408.1\|4974420_4975257_+	hypothetical protein	Q8SBF3	Shigella_phage	1.1e-138	92.4
AUQ40409.1\|4975261_4975486_+	hypothetical protein	A0A291AX25	Escherichia_phage	9.1e-37	97.3
AUQ40410.1\|4975482_4976301_+	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	4.7e-123	99.6
AUQ40411.1\|4976297_4976792_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	8.1e-86	97.5
AUQ40412.1\|4976791_4977445_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	1.9e-127	99.5
AUQ40413.1\|4977441_4977768_+	LexA family transcriptional regulator	K7PLX6	Enterobacteria_phage	2.0e-53	99.1
AUQ40414.1\|4977764_4978154_+	RusA family crossover junctionendodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
AUQ40415.1\|4978173_4979016_+	hypothetical protein	S5MC03	Escherichia_phage	5.7e-140	91.8
AUQ40416.1\|4979023_4980013_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	8.1e-194	99.1
AUQ40417.1\|4980030_4980372_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	4.2e-57	90.3
AUQ40418.1\|4980384_4980933_-	hypothetical protein	NA	NA	NA	NA
AUQ40419.1\|4980919_4981846_-	hypothetical protein	NA	NA	NA	NA
AUQ40420.1\|4981941_4982067_+	hypothetical protein	NA	NA	NA	NA
AUQ40421.1\|4982110_4982314_+	hypothetical protein	A0A291AWX6	Escherichia_phage	3.0e-31	98.5
AUQ40422.1\|4982464_4983517_+	site-specific DNA-methyltransferase	A5LH81	Enterobacteria_phage	2.6e-206	98.9
AUQ40423.1\|4983593_4983920_+\|holin	phage holin, lambda family	U5P0K7	Shigella_phage	2.6e-56	98.1
AUQ40424.1\|4983923_4984400_+	lysozyme	K7PKV2	Enterobacteria_phage	2.5e-84	95.6
AUQ40425.1\|4984396_4984840_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.5e-70	93.9
AUQ40426.1\|4984878_4985253_+	hypothetical protein	M1FPD9	Enterobacteria_phage	2.5e-55	87.9
AUQ40427.1\|4985351_4985534_-	hypothetical protein	NA	NA	NA	NA
AUQ40428.1\|4985532_4985733_+	hypothetical protein	K7PJR7	Enterobacteria_phage	2.3e-31	93.9
AUQ40429.1\|4985891_4986386_+	DUF1441 domain-containing protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
AUQ40430.1\|4986385_4988488_+	DNA packaging protein	K7PH40	Enterobacteria_phage	0.0e+00	99.6
AUQ40431.1\|4988484_4988697_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
AUQ40432.1\|4988696_4990205_+\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	1.6e-289	99.8
AUQ40433.1\|4990149_4992177_+	peptidase S14	A5LH30	Enterobacteria_phage	0.0e+00	99.5
AUQ40434.1\|4992218_4992587_+	DUF2190 domain-containing protein	A0A291AWX2	Escherichia_phage	9.7e-52	100.0
AUQ40435.1\|4992579_4992855_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
AUQ40436.1\|4992866_4993445_+\|tail	tail protein	A5LH33	Enterobacteria_phage	2.1e-101	99.5
AUQ40437.1\|4993441_4993843_+\|tail	tail protein	A5LH34	Enterobacteria_phage	1.6e-71	98.5
AUQ40438.1\|4993853_4994597_+\|tail	tail protein	A0A291AWU6	Escherichia_phage	1.6e-130	98.0
AUQ40439.1\|4994657_4995044_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	3.3e-66	100.0
AUQ40440.1\|4995052_4995382_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
AUQ40441.1\|4995353_4998419_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.8
AUQ40442.1\|4998418_4998748_+\|tail	tail protein	A5LH39	Enterobacteria_phage	5.1e-60	99.1
AUQ40443.1\|4998757_4999456_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.9e-133	99.1
AUQ40444.1\|4999461_5000205_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.2e-151	98.8
AUQ40445.1\|5000102_5000750_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.0e-112	97.7
AUQ40446.1\|5000810_5004293_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	89.5
AUQ40447.1\|5004351_5006412_+	hypothetical protein	A0A0E3M194	Enterobacteria_phage	5.7e-125	54.9
5010365:5010384	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025716

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection