CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP010657	Phaeobacter piscinae strain P71 plasmid pP71_a, complete sequence	0 crisprs	NA	0
CP010656	Phaeobacter piscinae strain P71 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh	4
CP010660	Phaeobacter piscinae strain P71 plasmid pP71_d, complete sequence	0 crisprs	NA	0
CP010659	Phaeobacter piscinae strain P71 plasmid pP71_c, complete sequence	0 crisprs	csa3	0
CP010658	Phaeobacter piscinae strain P71 plasmid pP71_b, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

711933 : 738550

Acinetobacter_phage(28.57%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ73591.1\|711933_712632_-\|transposase	IS2 transposase TnpB	S5WIU1	Leptospira_phage	5.0e-33	38.6
AUQ73592.1\|712655_712781_-	hypothetical protein	NA	NA	NA	NA
AUQ73593.1\|713000_713135_+	hypothetical protein	NA	NA	NA	NA
AUQ73594.1\|713293_715582_-	ABC transporter, ATP binding protein	A0A285PWH2	Cedratvirus	2.7e-14	32.0
AUQ73595.1\|715754_717098_-	signal transduction histidine kinase	A0A2K9L5I4	Tupanvirus	3.8e-05	24.1
AUQ73596.1\|717078_717738_-	two-component system response regulator	NA	NA	NA	NA
AUQ73597.1\|717801_718425_-	SNARE associated Golgi protein	NA	NA	NA	NA
AUQ73598.1\|718421_718826_-	hypothetical protein	NA	NA	NA	NA
AUQ73599.1\|718809_719109_-	hypothetical protein	NA	NA	NA	NA
AUQ73600.1\|719255_719582_-\|transposase	transposase, IS4 family	NA	NA	NA	NA
AUQ73601.1\|720153_720429_+\|transposase	putative transposase	NA	NA	NA	NA
AUQ73602.1\|720425_720548_+\|transposase	putative transposase	NA	NA	NA	NA
AUQ73603.1\|720557_721319_+\|transposase	putative transposase	A0A0P0I4A4	Acinetobacter_phage	8.7e-47	43.7
AUQ73604.1\|721595_723626_+	Outer membrane cobalamin receptor protein	A0A0P0I887	Acinetobacter_phage	1.9e-08	29.3
AUQ73605.1\|723689_724604_+	ABC-type hemin transport system, periplasmic component	NA	NA	NA	NA
AUQ73606.1\|724603_725659_+	ABC-type Fe3+-siderophore transport system, permease component	NA	NA	NA	NA
AUQ73607.1\|725665_726418_+	ABC-type hemin transport system, ATPase component	G3M9Y6	Bacillus_virus	3.4e-11	27.2
AUQ73608.1\|726539_727598_+	putative siderophore interacting protein	NA	NA	NA	NA
AUQ73609.1\|727685_728348_+	putative O-methyltransferase	NA	NA	NA	NA
AUQ73610.1\|728581_728803_+	Transposase	NA	NA	NA	NA
AUQ73611.1\|729998_733043_-	multidrug transporter MdtB	NA	NA	NA	NA
AUQ73612.1\|733039_733879_-	putative secretion protein	NA	NA	NA	NA
AUQ73613.1\|734190_735432_+	Sensor histidine kinase YehU	NA	NA	NA	NA
AUQ73614.1\|735428_736097_+	cell cycle response regulator	NA	NA	NA	NA
AUQ73615.1\|736189_736492_+	Transposase	A0A0N9SHJ4	Paenibacillus_phage	2.3e-14	39.2
AUQ73616.1\|736442_736940_+	Transposase	NA	NA	NA	NA
AUQ73617.1\|737680_738550_+\|transposase	putative transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1265869 : 1333483

uncultured_Mediterranean_phage(22.22%)

tRNA,protease,portal,tail,capsid,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ74118.1\|1265869_1267162_-\|tRNA	seryl-tRNA synthetase SerS	A0A1B1IVT2	uncultured_Mediterranean_phage	3.7e-82	46.9
AUQ74119.1\|1267271_1269092_-	putative low-complexity protein	NA	NA	NA	NA
AUQ74120.1\|1269271_1269556_+	preprotein translocase YajC-like protein	A0A1B1IVR5	uncultured_Mediterranean_phage	1.2e-20	53.8
AUQ74121.1\|1269590_1271252_+	protein-export membrane protein SecD	A0A1B1IVP7	uncultured_Mediterranean_phage	1.6e-05	24.0
AUQ74122.1\|1271253_1272222_+	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-60	48.1
AUQ74123.1\|1272390_1272744_+	hypothetical protein	NA	NA	NA	NA
AUQ74124.1\|1272841_1273468_+	cytochrome c biogenesis ATP-binding export protein CcmA	G9BWD6	Planktothrix_phage	5.0e-08	28.7
AUQ74125.1\|1273464_1274121_+	heme exporter protein B	NA	NA	NA	NA
AUQ74126.1\|1274166_1274898_+	heme exporter protein C	NA	NA	NA	NA
AUQ74127.1\|1274894_1275068_+	heme exporter protein CcmD	NA	NA	NA	NA
AUQ74128.1\|1275060_1275600_+	thiol:disulfide interchange protein CcmG	NA	NA	NA	NA
AUQ74129.1\|1275677_1275977_-	hypothetical protein	NA	NA	NA	NA
AUQ74130.1\|1276251_1278939_-	aconitate hydratase AcnA	NA	NA	NA	NA
AUQ74131.1\|1279184_1279916_+	putative secreted protein	NA	NA	NA	NA
AUQ74132.1\|1279930_1280866_-	putative lipid A biosynthesis acyltransferase	NA	NA	NA	NA
AUQ74133.1\|1281243_1282446_-	Flagellar motor switch protein	NA	NA	NA	NA
AUQ74134.1\|1282522_1283128_-	putative O-linked N-acetylglucosamine transferase, SPINDLY family	NA	NA	NA	NA
AUQ74135.1\|1283317_1284622_-	adenylosuccinate lyase PurB	A0A1B3B081	Gordonia_phage	6.6e-18	30.2
AUQ74136.1\|1284900_1286157_-	putative redox protein, regulator of disulfide bond formation	NA	NA	NA	NA
AUQ74137.1\|1286252_1286813_+	NTP pyrophosphohydrolase	NA	NA	NA	NA
AUQ74138.1\|1286890_1288279_-	protein DddP (metallopeptidase, family M24), DMSP degrading	NA	NA	NA	NA
AUQ74139.1\|1288421_1289186_+	hypothetical protein	NA	NA	NA	NA
AUQ74140.1\|1289201_1290227_-	hypothetical protein	NA	NA	NA	NA
AUQ74141.1\|1290762_1292169_-	glutamine synthetase GlnA	NA	NA	NA	NA
AUQ74142.1\|1292262_1292601_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
AUQ74143.1\|1292793_1294491_+	yjeF, hydroxyethylthiazole kinase-related protein/yjeF	NA	NA	NA	NA
AUQ74144.1\|1294865_1297070_-	putative methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	9.7e-14	28.6
AUQ74145.1\|1297423_1298554_+	Outer membrane protein (porin)	NA	NA	NA	NA
AUQ74146.1\|1298822_1300154_+	trigger factor Tig	NA	NA	NA	NA
AUQ74147.1\|1300370_1301639_-	Hemolysin-type calcium-binding protein repeat protein (2 copies)	M4SNJ8	Pseudoalteromonas_phage	1.2e-05	27.0
AUQ74148.1\|1301937_1303896_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB	NA	NA	NA	NA
AUQ74149.1\|1304046_1304517_-	transglycosylase-like protein	NA	NA	NA	NA
AUQ74150.1\|1304837_1305020_-	hypothetical protein	NA	NA	NA	NA
AUQ74151.1\|1305252_1305867_-	50S ribosomal protein L9	NA	NA	NA	NA
AUQ74152.1\|1305879_1306107_-	30S ribosomal protein S18	NA	NA	NA	NA
AUQ74153.1\|1306135_1306489_-	30S ribosomal protein S6	NA	NA	NA	NA
AUQ74154.1\|1306553_1306904_-	hypothetical protein	NA	NA	NA	NA
AUQ74155.1\|1307058_1307655_+	hypothetical protein	NA	NA	NA	NA
AUQ74156.1\|1307892_1308468_+	hypothetical protein	NA	NA	NA	NA
AUQ74157.1\|1308663_1309527_+	hypothetical protein	NA	NA	NA	NA
AUQ74158.1\|1309655_1310960_-	Cytochrome B561	NA	NA	NA	NA
AUQ74159.1\|1311145_1312078_+	malonyl CoA-acyl carrier protein transacylase FabD	NA	NA	NA	NA
AUQ74160.1\|1312164_1312902_+	3-oxoacyl-[acyl-carrier-protein] reductase FabG	NA	NA	NA	NA
AUQ74161.1\|1313538_1313772_+	acyl carrier protein AcpP	A0A2C9CX86	Yersinia_phage	7.3e-05	52.1
AUQ74162.1\|1313936_1314680_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase-like protein	NA	NA	NA	NA
AUQ74163.1\|1314973_1315894_-	bacterial type IV pilus assembly (PilZ) protein-like protein	NA	NA	NA	NA
AUQ74164.1\|1316248_1317514_+	3-oxoacyl-[acyl-carrier-protein] synthase FabF	NA	NA	NA	NA
AUQ74165.1\|1317513_1318668_+	putative aminodeoxychorismate lyase	NA	NA	NA	NA
AUQ74166.1\|1318959_1319301_+	DNA integration/recombination/inversion protein	NA	NA	NA	NA
AUQ74167.1\|1319272_1320565_+\|terminase	putative gene transfer agent large terminase	A0A0K1LMR9	Caulobacter_phage	9.9e-75	43.3
AUQ74168.1\|1320769_1321963_+\|portal	putative gene transfer agent portal protein	W8ECU7	Geobacillus_phage	1.1e-59	36.1
AUQ74169.1\|1321955_1322174_+	hypothetical protein	NA	NA	NA	NA
AUQ74170.1\|1322206_1322827_+\|head,protease	putative gene transfer agent prohead protease	A0A0U2BX10	Paracoccus_phage	1.3e-32	53.3
AUQ74171.1\|1322875_1324060_+\|capsid	gene transfer agent major capsid protein	B0VK33	Azospirillum_phage	7.4e-61	41.1
AUQ74172.1\|1324245_1324893_+	putative gene transfer agent protein	NA	NA	NA	NA
AUQ74173.1\|1324889_1325261_+\|head,tail	putative gene transfer agent head-tail adaptor	NA	NA	NA	NA
AUQ74174.1\|1325257_1325671_+	putative gene transfer agent protein	NA	NA	NA	NA
AUQ74175.1\|1325777_1326191_+\|tail	putative gene transfer agent major tail protein	NA	NA	NA	NA
AUQ74176.1\|1326205_1326559_+	hypothetical protein	NA	NA	NA	NA
AUQ74177.1\|1326555_1326813_+	phage hypothetical protein	NA	NA	NA	NA
AUQ74178.1\|1326805_1327462_+\|tail	putative gene transfer agent tail tape measure protein	D6PFD6	uncultured_phage	1.3e-14	36.6
AUQ74179.1\|1327477_1328110_+	putative gene transfer agent protein	A0A0B5A2K3	Paracoccus_phage	1.2e-57	49.5
AUQ74180.1\|1328109_1329060_+	hypothetical protein	A0A1V0DY93	Dinoroseobacter_phage	6.0e-53	36.9
AUQ74181.1\|1329056_1329527_+	putative phage cell wall peptidase, NlpC/P60 family	F4YXU4	Roseobacter_phage	7.8e-30	45.0
AUQ74182.1\|1329526_1333483_+	putative gene transfer agent protein	A0A0B5A7K5	Paracoccus_phage	3.1e-228	38.3

DBSCAN-SWA_3

1928990 : 1936607

Ruegeria_phage(16.67%)

integrase

attL 1928598:1928613|attR 1934384:1934399

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1928598:1928613	attL	NA	NA	NA	NA
AUQ74723.1\|1928990_1930193_+\|integrase	Domain protein of unknown function/Phage integrase family protein	A0A1X9HVL9	Ruegeria_phage	2.5e-128	57.9
AUQ74724.1\|1930170_1930368_-	hypothetical protein	NA	NA	NA	NA
AUQ74725.1\|1930387_1930774_-	hypothetical protein	NA	NA	NA	NA
AUQ74726.1\|1930784_1931213_-	hypothetical protein	A0A0K2FNP6	Mycobacterium_phage	1.8e-09	42.0
AUQ74727.1\|1931163_1931337_-	hypothetical protein	NA	NA	NA	NA
AUQ74728.1\|1931360_1931555_+	hypothetical protein	NA	NA	NA	NA
AUQ74729.1\|1931579_1931831_+	hypothetical protein	NA	NA	NA	NA
AUQ74730.1\|1931876_1932161_+	hypothetical protein	NA	NA	NA	NA
AUQ74731.1\|1932198_1932546_+	hypothetical protein	NA	NA	NA	NA
AUQ74732.1\|1932686_1933283_+	hypothetical protein	A0A2I7RTZ0	Vibrio_phage	2.4e-15	39.3
AUQ74733.1\|1933337_1933556_+	hypothetical protein	G8DCU2	Silicibacter_phage	8.1e-06	39.7
AUQ74734.1\|1933663_1933849_+	hypothetical protein	NA	NA	NA	NA
AUQ74735.1\|1933861_1934098_+	hypothetical protein	NA	NA	NA	NA
AUQ74736.1\|1934115_1934415_+	hypothetical protein	NA	NA	NA	NA
1934384:1934399	attR	NA	NA	NA	NA
AUQ74737.1\|1934453_1934945_+	phage N-6-adenine-methyltransferase	M4QBY4	Dunaliella_viridis_virus	3.1e-53	65.1
AUQ74738.1\|1934986_1935184_+	hypothetical protein	NA	NA	NA	NA
AUQ74739.1\|1935208_1935325_+	hypothetical protein	NA	NA	NA	NA
AUQ74740.1\|1935658_1935898_-	hypothetical protein	NA	NA	NA	NA
AUQ74741.1\|1935894_1936092_-	hypothetical protein	NA	NA	NA	NA
AUQ74742.1\|1936088_1936607_-	Negative regulator of beta-lactamase expression	A0A2D2W4Z1	Ralstonia_phage	5.2e-27	41.5

DBSCAN-SWA_4

1950653 : 1958677

Vibrio_phage(50.0%)

coat,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ74763.1\|1950653_1951895_-\|coat	P22 coat protein	I3PUX4	Vibrio_phage	2.4e-54	34.6
AUQ74764.1\|1951907_1952750_-	hypothetical protein	I3PUX5	Vibrio_phage	4.8e-14	31.1
AUQ74765.1\|1952763_1954755_-	hypothetical protein	I3PUX6	Vibrio_phage	1.8e-123	39.8
AUQ74766.1\|1954751_1956104_-\|terminase	putative gene transfer agent large terminase	A0A1V0DY66	Dinoroseobacter_phage	3.4e-78	43.3
AUQ74767.1\|1956100_1956685_-	Terminase small subunit	H2BD75	Pseudomonas_phage	1.2e-24	41.3
AUQ74768.1\|1957302_1957893_-	Transcription antiterminator	NA	NA	NA	NA
AUQ74769.1\|1957889_1958306_-	hypothetical protein	NA	NA	NA	NA
AUQ74770.1\|1958317_1958677_-	hypothetical protein	F8TUV4	EBPR_podovirus	6.2e-11	40.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage