CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP010723	Phaeobacter piscinae strain P18 plasmid pP18_h, complete sequence	0 crisprs	NA	0
CP010721	Phaeobacter piscinae strain P18 plasmid pP18_f, complete sequence	0 crisprs	NA	1
CP010719	Phaeobacter piscinae strain P18 plasmid pP18_d, complete sequence	0 crisprs	csa3	0
CP010722	Phaeobacter piscinae strain P18 plasmid pP18_g, complete sequence	0 crisprs	NA	2
CP010718	Phaeobacter piscinae strain P18 plasmid pP18_c, complete sequence	0 crisprs	NA	0
CP010724	Phaeobacter piscinae strain P18 plasmid pP18_i, complete sequence	0 crisprs	NA	0
CP010715	Phaeobacter piscinae strain P18 chromosome, complete genome	0 crisprs	WYL,csa3,cas3,DEDDh	3
CP010717	Phaeobacter piscinae strain P18 plasmid pP18_b, complete sequence	0 crisprs	NA	0
CP010716	Phaeobacter piscinae strain P18 plasmid pP18_a, complete sequence	0 crisprs	NA	0
CP010720	Phaeobacter piscinae strain P18 plasmid pP18_e, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11154 : 33765

Emiliania_huxleyi_virus(28.57%)

tail,portal,protease,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR38345.1\|11154_14196_-	Domain protein of unknown function	G8DH58	Emiliania_huxleyi_virus	1.4e-116	37.7
AUR38346.1\|14192_14612_-	hypothetical protein	G8DH57	Emiliania_huxleyi_virus	3.1e-30	52.6
AUR38347.1\|14646_15231_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	1.3e-29	38.0
AUR38348.1\|15227_15887_-	hypothetical protein	A0A0U2BXF8	Paracoccus_phage	5.6e-18	30.8
AUR38349.1\|15883_18499_-\|tail	putative phage tail tape measure protein	A0A0U2BXT9	Paracoccus_phage	1.1e-64	47.1
AUR38350.1\|18814_19165_-	hypothetical protein	NA	NA	NA	NA
AUR38351.1\|19172_19598_-	hypothetical protein	NA	NA	NA	NA
AUR38352.1\|19648_20062_-	hypothetical protein	NA	NA	NA	NA
AUR38353.1\|20058_20382_-	hypothetical protein	NA	NA	NA	NA
AUR38354.1\|20386_20719_-	hypothetical protein	A0A2I7QRW1	Vibrio_phage	2.9e-07	40.7
AUR38355.1\|20811_22899_-\|protease	Protease subunit of ATP-dependent Clp protease	A0A088C3V8	Shewanella_sp._phage	2.9e-23	25.5
AUR38356.1\|22885_24355_-\|portal	phage portal protein, lambda family	A0A076G8T0	Pseudoalteromonas_phage	8.4e-46	29.1
AUR38357.1\|24354_24552_-	hypothetical protein	NA	NA	NA	NA
AUR38358.1\|24557_26711_-\|terminase	phage terminase large subunit (GpA)	A0A0K1LL96	Rhodobacter_phage	8.9e-113	37.0
AUR38359.1\|26714_27368_-	hypothetical protein	NA	NA	NA	NA
AUR38360.1\|27497_28211_-	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	1.7e-12	28.3
AUR38361.1\|28320_29016_-	hypothetical protein	G8DGC1	Emiliania_huxleyi_virus	1.7e-36	44.8
AUR38362.1\|29343_31227_-	hypothetical protein	A0A291LAR9	Bordetella_phage	5.5e-26	29.1
AUR38363.1\|31219_32395_-	DNA primase (bacterial type)	G8DGB8	Emiliania_huxleyi_virus	2.4e-83	45.6
AUR38364.1\|32391_32700_-	hypothetical protein	NA	NA	NA	NA
AUR38365.1\|32696_32996_-	hypothetical protein	NA	NA	NA	NA
AUR38366.1\|32985_33765_-	DNA modification methylase	M4R187	Loktanella_phage	1.3e-18	32.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP010722

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6385 : 16626

Streptococcus_phage(33.33%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR38389.1\|6385_7495_-\|transposase	transposase	M1NSC9	Streptococcus_phage	8.9e-08	32.5
AUR38390.1\|7647_8484_-	Aminoglycoside/hydroxyurea antibiotic resistance kinase	NA	NA	NA	NA
AUR38391.1\|8483_8903_-	Aminoglycoside 3'-phosphotransferase	NA	NA	NA	NA
AUR38392.1\|9352_9967_-\|integrase	putative integrases/recombinase	E5FFF9	Burkholderia_phage	2.3e-37	48.6
AUR38393.1\|10087_12979_+	Transposase, TnpA family	A0A1B0V7H9	Salmonella_phage	1.1e-185	38.7
AUR38394.1\|13058_14168_+\|transposase	transposase	M1NSC9	Streptococcus_phage	8.9e-08	32.5
AUR38395.1\|14635_15241_+	resolvase	A0A0F7LA37	Escherichia_phage	1.4e-26	38.9
AUR38396.1\|15369_15705_-	hypothetical protein	NA	NA	NA	NA
AUR38397.1\|15762_16626_-	beta-lactamase Bla	A0A077SL40	Escherichia_phage	4.4e-71	50.7

DBSCAN-SWA_2

19795 : 30203

Caulobacter_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR38402.1\|19795_22063_+	Methyltransferase domain protein	A0A2R2ZGH5	Clostridioides_phage	1.5e-102	35.0
AUR38403.1\|22254_23610_-	Transposase DDE domain protein	A0A1X9I6F6	Streptococcus_phage	1.3e-45	29.7
AUR38404.1\|23697_24660_+	hypothetical protein	Q8V6N5	Halorubrum_phage	5.7e-11	26.6
AUR38405.1\|24902_25655_+	putative phage-encoded protein	A0A290FZK7	Caldibacillus_phage	4.8e-29	52.8
AUR38406.1\|25828_26077_-	putative ArdC antirestriction protein	A0A1V0EEV1	Caulobacter_phage	8.6e-12	55.7
AUR38407.1\|26223_27222_-	Site-specific recombinase XerD	A0A2K9VH72	Gordonia_phage	3.3e-17	28.3
AUR38408.1\|27218_28163_-	Site-specific recombinase XerD	NA	NA	NA	NA
AUR38409.1\|28159_29374_-	Site-specific recombinase XerD	A0A1L4BKH1	Thermus_phage	7.2e-11	27.2
AUR38410.1\|29516_30203_-	Domain protein of unknown function	A0A1V0EEV1	Caulobacter_phage	1.0e-30	36.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP010715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1590959 : 1599032

uncultured_Caudovirales_phage(28.57%)

protease,portal,terminase,tail,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR35778.1\|1590959_1591406_-	hypothetical protein	A0A2I7RB20	Vibrio_phage	1.8e-12	33.3
AUR35779.1\|1591466_1591754_-	hypothetical protein	NA	NA	NA	NA
AUR35780.1\|1591798_1592152_-	hypothetical protein	NA	NA	NA	NA
AUR35781.1\|1592151_1592607_-	hypothetical protein	NA	NA	NA	NA
AUR35782.1\|1592603_1592930_-\|head,tail	Phage head-tail joining protein	NA	NA	NA	NA
AUR35783.1\|1592929_1593502_-	phage hypothetical protein gp8 family protein	A0A141GEW4	Brucella_phage	1.9e-33	42.6
AUR35784.1\|1593501_1593678_-	hypothetical protein	A0A2H4JDE5	uncultured_Caudovirales_phage	3.8e-06	63.2
AUR35785.1\|1593738_1594956_-\|capsid	major capsid protein	A0A2H4JD98	uncultured_Caudovirales_phage	1.2e-130	61.4
AUR35786.1\|1594980_1595658_-\|head,protease	putative phage prohead protease	A0A0U2BX10	Paracoccus_phage	1.5e-45	56.7
AUR35787.1\|1595641_1596859_-\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	6.8e-126	56.8
AUR35788.1\|1596862_1598509_-\|terminase	Phage terminase-like protein, large subunit	B0VK29	Azospirillum_phage	6.8e-113	40.6
AUR35789.1\|1598624_1599032_-\|terminase	Phage terminase, small subunit	NA	NA	NA	NA

DBSCAN-SWA_2

1774256 : 1810033

Paracoccus_phage(27.27%)

tRNA,protease,portal,head,tail,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR35950.1\|1774256_1775327_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUR35951.1\|1775431_1779160_-	putative protein involved in outer membrane biogenesis	NA	NA	NA	NA
AUR35952.1\|1779260_1779722_+	putative peroxiredoxin Bcp	NA	NA	NA	NA
AUR35953.1\|1779863_1780745_+	putative protein in bacteria	NA	NA	NA	NA
AUR35954.1\|1781150_1782482_+	putative peptidase M23 family protein	A8ATH6	Listeria_phage	2.5e-17	45.0
AUR35955.1\|1782471_1783014_+	Integral membrane protein CcmA involved in cell shape determination	NA	NA	NA	NA
AUR35956.1\|1783275_1784520_+	hemolysin-type calcium-binding repeat-containing protein	NA	NA	NA	NA
AUR35957.1\|1784763_1786260_+	hemolysin-type calcium-binding repeat-containing protein	NA	NA	NA	NA
AUR35958.1\|1786347_1787355_-	hypothetical protein	NA	NA	NA	NA
AUR35959.1\|1787555_1788107_-	putative peptidyl-prolyl cis-trans isomerases (cyclophilin)	A0A1B1IVS0	uncultured_Mediterranean_phage	9.8e-40	57.1
AUR35960.1\|1788099_1788606_-	putative peptidyl-prolyl cis-trans isomerase A	A0A1B1IVS0	uncultured_Mediterranean_phage	3.3e-42	55.0
AUR35961.1\|1788787_1789978_+	phosphoglycerate kinase Pgk	NA	NA	NA	NA
AUR35962.1\|1790255_1790555_+	septum formation initiator-like protein	NA	NA	NA	NA
AUR35963.1\|1790857_1791871_+	pyruvate dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
AUR35964.1\|1791887_1793273_+	pyruvate dehydrogenase E1 component subunit beta	NA	NA	NA	NA
AUR35965.1\|1793285_1794623_+	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	NA	NA	NA	NA
AUR35966.1\|1794805_1795693_-	Glycolipid sulfotransferase	NA	NA	NA	NA
AUR35967.1\|1795903_1796719_-	serine O-acetyltransferase	NA	NA	NA	NA
AUR35968.1\|1796986_1797307_-	hypothetical protein	NA	NA	NA	NA
AUR35969.1\|1797319_1801276_-	putative gene transfer agent protein	A0A0B5A7K5	Paracoccus_phage	7.1e-225	37.9
AUR35970.1\|1801275_1801746_-	putative phage cell wall peptidase, NlpC/P60 family	A0A1V0DYB6	Dinoroseobacter_phage	1.0e-29	49.3
AUR35971.1\|1801742_1802693_-	hypothetical protein	A0A0K0PVK1	Roseobacter_phage	1.5e-51	35.5
AUR35972.1\|1802692_1803325_-	putative gene transfer agent protein	A0A0B5A2K3	Paracoccus_phage	5.9e-49	45.7
AUR35973.1\|1803340_1803997_-\|tail	putative gene transfer agent tail tape measure protein	D6PFD6	uncultured_phage	1.3e-14	37.2
AUR35974.1\|1803989_1804247_-	phage hypothetical protein	NA	NA	NA	NA
AUR35975.1\|1804243_1804597_-	hypothetical protein	NA	NA	NA	NA
AUR35976.1\|1804611_1805025_-\|tail	putative gene transfer agent major tail protein	NA	NA	NA	NA
AUR35977.1\|1805131_1805545_-	putative gene transfer agent protein	NA	NA	NA	NA
AUR35978.1\|1805541_1805913_-\|head,tail	putative gene transfer agent head-tail adaptor	NA	NA	NA	NA
AUR35979.1\|1805909_1806557_-	putative gene transfer agent protein	NA	NA	NA	NA
AUR35980.1\|1806742_1807927_-\|capsid	gene transfer agent major capsid protein	B0VK33	Azospirillum_phage	1.5e-61	41.7
AUR35981.1\|1807975_1808596_-\|head,protease	putative gene transfer agent prohead protease	A0A0U2BX10	Paracoccus_phage	3.8e-32	53.3
AUR35982.1\|1808628_1808847_-	hypothetical protein	NA	NA	NA	NA
AUR35983.1\|1808839_1810033_-\|portal	putative gene transfer agent portal protein	W8ECU7	Geobacillus_phage	1.1e-59	36.1

DBSCAN-SWA_3

2361561 : 2395177

Acinetobacter_phage(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR36506.1\|2361561_2363883_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A223W0B1	Agrobacterium_phage	1.6e-171	43.5
AUR36507.1\|2363887_2364853_+	putative peptidase, M23 family	NA	NA	NA	NA
AUR36508.1\|2365040_2365625_+	putative protein in bacteria	NA	NA	NA	NA
AUR36509.1\|2365635_2367603_-	outer membrane protein-like protein	NA	NA	NA	NA
AUR36510.1\|2367606_2368788_-	hypothetical protein	NA	NA	NA	NA
AUR36511.1\|2368866_2369397_-	putative cation transport protein ChaC	NA	NA	NA	NA
AUR36512.1\|2369464_2370466_+	putative protein in bacteria	NA	NA	NA	NA
AUR36513.1\|2370462_2371326_-	extensin-like protein	NA	NA	NA	NA
AUR36514.1\|2371322_2372243_-	protein TyrC	NA	NA	NA	NA
AUR36515.1\|2372239_2373325_-	histidinol-phosphate aminotransferase HisC	A0A1X6WGT4	Pacmanvirus	3.5e-17	25.7
AUR36516.1\|2373481_2373943_+	transcriptional regulator, AsnC family	NA	NA	NA	NA
AUR36517.1\|2373985_2374558_-	PA14 domain protein	NA	NA	NA	NA
AUR36518.1\|2374765_2375386_-	30S ribosomal protein S4	NA	NA	NA	NA
AUR36519.1\|2375633_2376710_-	Hint domain protein	NA	NA	NA	NA
AUR36520.1\|2376844_2377714_-\|transposase	putative transposase	NA	NA	NA	NA
AUR36521.1\|2377710_2377989_-\|transposase	putative transposase	NA	NA	NA	NA
AUR36522.1\|2378453_2378951_-	Transposase	NA	NA	NA	NA
AUR36523.1\|2378901_2379204_-	Transposase	A0A0N9SHJ4	Paenibacillus_phage	2.3e-14	39.2
AUR36524.1\|2379296_2379965_-	cell cycle response regulator	NA	NA	NA	NA
AUR36525.1\|2379961_2381203_-	Sensor histidine kinase YehU	NA	NA	NA	NA
AUR36526.1\|2381514_2382354_+	putative secretion protein	NA	NA	NA	NA
AUR36527.1\|2382350_2385395_+	multidrug transporter MdtB	NA	NA	NA	NA
AUR36528.1\|2386526_2386748_-	Transposase	NA	NA	NA	NA
AUR36529.1\|2386982_2387645_-	putative O-methyltransferase	NA	NA	NA	NA
AUR36530.1\|2387732_2388791_-	putative siderophore interacting protein	NA	NA	NA	NA
AUR36531.1\|2388912_2389665_-	ABC-type hemin transport system, ATPase component	G3M9Y6	Bacillus_virus	3.4e-11	27.2
AUR36532.1\|2389671_2390727_-	ABC-type Fe3+-siderophore transport system, permease component	NA	NA	NA	NA
AUR36533.1\|2390726_2391641_-	ABC-type hemin transport system, periplasmic component	NA	NA	NA	NA
AUR36534.1\|2391704_2393735_-	Outer membrane cobalamin receptor protein	A0A0P0I887	Acinetobacter_phage	1.9e-08	29.3
AUR36535.1\|2394011_2394773_-\|transposase	putative transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-47	43.7
AUR36536.1\|2394782_2394905_-\|transposase	putative transposase	NA	NA	NA	NA
AUR36537.1\|2394901_2395177_-\|transposase	putative transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP010721

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP010722

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP010715

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection