CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP010624	Phaeobacter inhibens strain P51 plasmid pP51_a, complete sequence	0 crisprs	NA	0
CP010625	Phaeobacter inhibens strain P51 plasmid pP51_b, complete sequence	0 crisprs	csa3	0
CP010627	Phaeobacter inhibens strain P51 plasmid pP51_d, complete sequence	0 crisprs	csa3	1
CP010623	Phaeobacter inhibens strain P51 chromosome, complete genome	0 crisprs	WYL,csa3,RT,DEDDh	3
CP010626	Phaeobacter inhibens strain P51 plasmid pP51_c, complete sequence	0 crisprs	NA	0
CP010628	Phaeobacter inhibens strain P51 plasmid pP51_e, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1369058 : 1393213

Vibrio_phage(26.67%)

terminase,capsid,plate,tail,head,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ62318.1\|1369058_1369820_+	phosphoribosylaminoimidazole-succinocarboxamide synthase PurC	G8EYA2	Synechococcus_phage	1.9e-46	41.8
AUQ62319.1\|1369923_1370157_+	phosphoribosylformylglycinamidine (FGAM) synthase PurS	NA	NA	NA	NA
AUQ62320.1\|1370153_1370822_+	phosphoribosylformylglycinamidine synthase 1	NA	NA	NA	NA
AUQ62321.1\|1370989_1371961_-	phage late control gene D protein (GPD)	D4HTW7	Vibrio_phage	3.3e-67	42.9
AUQ62322.1\|1371965_1372172_-\|tail	phage tail protein X	Q8H9M2	Vibrio_phage	1.9e-09	44.9
AUQ62323.1\|1372168_1372624_-\|tail	phage-related tail protein (gpU)	F1BUT6	Erwinia_phage	4.6e-19	40.5
AUQ62324.1\|1372616_1375694_-\|tail	putative phage tail tape measure protein	H7BVM4	unidentified_phage	3.6e-59	41.4
AUQ62325.1\|1375690_1375813_-	hypothetical protein	NA	NA	NA	NA
AUQ62326.1\|1375809_1376103_-	hypothetical protein	NA	NA	NA	NA
AUQ62327.1\|1376116_1376623_-\|tail	phage major tail tube protein	A0A088FRU2	Escherichia_phage	5.8e-23	35.0
AUQ62328.1\|1376638_1377808_-\|tail	major tail sheath protein	D4HTW1	Vibrio_phage	1.9e-125	59.3
AUQ62329.1\|1377800_1378292_-	hypothetical protein	NA	NA	NA	NA
AUQ62330.1\|1378306_1379980_-	hypothetical protein	F8WQ05	Bacillus_phage	3.3e-06	24.3
AUQ62331.1\|1379976_1380537_-	hypothetical protein	NA	NA	NA	NA
AUQ62332.1\|1380537_1381236_-\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	6.2e-23	40.8
AUQ62333.1\|1381228_1382122_-\|plate	baseplate assembly protein J	K7R9K5	Vibrio_phage	2.1e-63	44.8
AUQ62334.1\|1382118_1382472_-\|plate	putative baseplate assembly protein W	V5YTB2	Pseudomonas_phage	1.4e-28	56.6
AUQ62335.1\|1382468_1382939_-\|plate	putative baseplate assembly protein V	Q9ZXL0	Pseudomonas_virus	7.9e-14	31.8
AUQ62336.1\|1382935_1383448_-	hypothetical protein	NA	NA	NA	NA
AUQ62337.1\|1383457_1383880_-	hypothetical protein	NA	NA	NA	NA
AUQ62338.1\|1383883_1384819_-\|capsid	capsid protein	NA	NA	NA	NA
AUQ62339.1\|1384815_1385760_-	hypothetical protein	R9QT36	Halovirus	2.8e-10	29.3
AUQ62340.1\|1385917_1387198_+\|portal	putative gene transfer agent portal protein	NA	NA	NA	NA
AUQ62341.1\|1387213_1388950_+\|terminase	terminase ATPase subunit	V9IQL5	Stenotrophomonas_phage	7.4e-25	24.8
AUQ62342.1\|1388946_1389363_+	hypothetical protein	NA	NA	NA	NA
AUQ62343.1\|1389405_1390032_+	hypothetical protein	NA	NA	NA	NA
AUQ62344.1\|1390058_1390889_+	Lysozyme RrrD	A0A0K1Y6F2	Rhodobacter_phage	1.4e-29	48.5
AUQ62345.1\|1391015_1391294_+	hypothetical protein	NA	NA	NA	NA
AUQ62346.1\|1391293_1391728_+	hypothetical protein	NA	NA	NA	NA
AUQ62347.1\|1391727_1391931_+	hypothetical protein	NA	NA	NA	NA
AUQ62348.1\|1391987_1392284_-	hypothetical protein	NA	NA	NA	NA
AUQ62349.1\|1392295_1393213_-\|head	phage head morphogenesis protein, SPP1 gp7 family	NA	NA	NA	NA

DBSCAN-SWA_2

1854696 : 1898249

Paracoccus_phage(27.27%)

terminase,capsid,head,tail,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ62771.1\|1854696_1855833_-\|tRNA	S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AUQ62772.1\|1855869_1859541_-	putative protein involved in outer membrane biogenesis	NA	NA	NA	NA
AUQ62773.1\|1859686_1860148_+	putative peroxiredoxin Bcp	NA	NA	NA	NA
AUQ62774.1\|1860289_1861171_+	putative protein in bacteria	NA	NA	NA	NA
AUQ62775.1\|1861576_1862908_+	putative peptidase M23 family protein	S5M424	Bacillus_phage	1.1e-17	44.3
AUQ62776.1\|1862897_1863440_+	Integral membrane protein CcmA involved in cell shape determination	NA	NA	NA	NA
AUQ62777.1\|1863682_1864927_+	hemolysin-type calcium-binding repeat-containing protein	NA	NA	NA	NA
AUQ62778.1\|1865168_1866665_+	hemolysin-type calcium-binding repeat-containing protein	NA	NA	NA	NA
AUQ62779.1\|1866752_1867760_-	hypothetical protein	NA	NA	NA	NA
AUQ62780.1\|1867974_1868526_-	putative peptidyl-prolyl cis-trans isomerases (cyclophilin)	A0A1B1IVS0	uncultured_Mediterranean_phage	2.0e-40	57.7
AUQ62781.1\|1868518_1869025_-	putative peptidyl-prolyl cis-trans isomerase A	A0A1B1IVS0	uncultured_Mediterranean_phage	9.6e-42	55.0
AUQ62782.1\|1869206_1870397_+	phosphoglycerate kinase Pgk	NA	NA	NA	NA
AUQ62783.1\|1870536_1870953_+	septum formation initiator-like protein	NA	NA	NA	NA
AUQ62784.1\|1871255_1872269_+	pyruvate dehydrogenase E1 component subunit alpha	NA	NA	NA	NA
AUQ62785.1\|1872285_1873671_+	pyruvate dehydrogenase E1 component subunit beta	NA	NA	NA	NA
AUQ62786.1\|1873683_1875003_+	dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex	NA	NA	NA	NA
AUQ62787.1\|1875478_1875673_-	hypothetical protein	NA	NA	NA	NA
AUQ62788.1\|1875729_1876140_-	hypothetical protein	NA	NA	NA	NA
AUQ62789.1\|1876477_1877599_-	putative alanine racemase	NA	NA	NA	NA
AUQ62790.1\|1877595_1878786_-	hypothetical protein	NA	NA	NA	NA
AUQ62791.1\|1878877_1879633_-	hypothetical protein	NA	NA	NA	NA
AUQ62792.1\|1879622_1879976_-	hypothetical protein	NA	NA	NA	NA
AUQ62793.1\|1880021_1880300_-	hypothetical protein	NA	NA	NA	NA
AUQ62794.1\|1880816_1881005_+	hypothetical protein	NA	NA	NA	NA
AUQ62795.1\|1881062_1881884_-	transcriptional regulator, crp family	NA	NA	NA	NA
AUQ62796.1\|1881949_1882186_+	hypothetical protein	NA	NA	NA	NA
AUQ62797.1\|1882182_1882743_+	hypothetical protein	NA	NA	NA	NA
AUQ62798.1\|1882576_1883392_-	serine O-acetyltransferase	NA	NA	NA	NA
AUQ62799.1\|1883684_1883981_-	hypothetical protein	NA	NA	NA	NA
AUQ62800.1\|1883993_1887974_-	putative gene transfer agent protein	A0A0B5A7K5	Paracoccus_phage	3.1e-220	37.1
AUQ62801.1\|1887973_1888444_-	putative phage cell wall peptidase, NlpC/P60 family	A0A1V0DYB6	Dinoroseobacter_phage	1.1e-28	48.6
AUQ62802.1\|1888440_1889391_-	hypothetical protein	A0A1V0DY93	Dinoroseobacter_phage	1.3e-52	38.3
AUQ62803.1\|1889390_1890023_-	putative gene transfer agent protein	A0A0B5A2K3	Paracoccus_phage	7.7e-57	50.0
AUQ62804.1\|1890038_1890695_-\|tail	putative gene transfer agent tail tape measure protein	A0A0A8J8P3	Ralstonia_phage	7.4e-10	44.7
AUQ62805.1\|1890687_1890945_-	gene transfer agent (GTA) protein	NA	NA	NA	NA
AUQ62806.1\|1890941_1891346_-	hypothetical protein	NA	NA	NA	NA
AUQ62807.1\|1891359_1891773_-\|tail	putative gene transfer agent major tail protein	NA	NA	NA	NA
AUQ62808.1\|1891875_1892283_-	putative gene transfer agent protein	NA	NA	NA	NA
AUQ62809.1\|1892279_1892651_-\|head,tail	putative gene transfer agent head-tail adaptor	NA	NA	NA	NA
AUQ62810.1\|1892647_1893295_-	putative gene transfer agent protein	NA	NA	NA	NA
AUQ62811.1\|1893474_1894659_-\|capsid	gene transfer agent major capsid protein	B0VK33	Azospirillum_phage	3.3e-61	39.6
AUQ62812.1\|1894707_1895328_-\|head,protease	putative gene transfer agent prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-31	53.3
AUQ62813.1\|1895360_1895579_-	hypothetical protein	NA	NA	NA	NA
AUQ62814.1\|1896956_1898249_-\|terminase	putative gene transfer agent large terminase	A0A0K1LMR9	Caulobacter_phage	8.4e-74	42.9

DBSCAN-SWA_3

1927013 : 1936543

Sinorhizobium_phage(20.0%)

terminase,capsid,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ62846.1\|1927013_1929407_-\|tail	putative phage tail tape measure protein	A0A291AUM6	Sinorhizobium_phage	6.6e-48	42.0
AUQ62847.1\|1929418_1930951_-\|terminase	putative phage terminase, large subunit	H9YSH1	environmental_Halophage	1.1e-43	26.7
AUQ62848.1\|1931069_1931459_-\|terminase	putative phage terminase, small subunit, P27 family	NA	NA	NA	NA
AUQ62849.1\|1931455_1931773_-\|head,tail	putative phage head-tail adaptor	NA	NA	NA	NA
AUQ62850.1\|1931775_1932195_-	hypothetical protein	NA	NA	NA	NA
AUQ62851.1\|1932191_1932626_-	phage protein, HK97 gp10 family	NA	NA	NA	NA
AUQ62852.1\|1932612_1932909_-\|head,tail	Phage gp6-like head-tail connector protein	A0A0R6PKP1	Moraxella_phage	4.9e-06	34.9
AUQ62853.1\|1932859_1933294_-	hypothetical protein	NA	NA	NA	NA
AUQ62854.1\|1933283_1933634_-	HNH endonuclease	Q38456	Bacillus_phage	2.4e-15	39.3
AUQ62855.1\|1933633_1934188_-	hypothetical protein	NA	NA	NA	NA
AUQ62856.1\|1934262_1935684_-\|capsid	phage major capsid protein, HK97 family	A0A1B1IQC5	uncultured_Mediterranean_phage	3.9e-16	27.3
AUQ62857.1\|1935826_1936543_-\|tail	Phage-related protein, tail component	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP010627

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

48055 : 55231

uncultured_Mediterranean_phage(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUQ64903.1\|48055_48517_+	hypothetical protein	A0A1B1IUL8	uncultured_Mediterranean_phage	3.0e-34	58.6
AUQ64904.1\|48617_48920_+	hypothetical protein	NA	NA	NA	NA
AUQ64905.1\|49045_49774_+	hypothetical protein	NA	NA	NA	NA
AUQ64906.1\|49930_50467_+	hypothetical protein	NA	NA	NA	NA
AUQ64907.1\|50643_51351_-	hypothetical protein	NA	NA	NA	NA
AUQ64908.1\|51410_51632_-	hypothetical protein	E8ZD70	Streptococcus_phage	8.5e-11	50.7
AUQ64909.1\|51790_52126_+	HTH-type transcriptional regulator SinR	F8TVE5	EBPR_siphovirus	1.1e-09	49.2
AUQ64910.1\|52112_52895_+	hypothetical protein	Q854W5	Mycobacterium_virus	9.7e-09	31.1
AUQ64911.1\|53006_53738_-	putative insertion sequence ATP binding protein	A0A2L1IVB6	Escherichia_phage	5.8e-32	37.2
AUQ64912.1\|53734_55231_-\|transposase	transposase	U5N3F9	Enterobacteria_phage	3.5e-31	27.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP010623

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP010627

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection