CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP010757	Phaeobacter inhibens strain P80 plasmid pP80_a, complete sequence	0 crisprs	NA	0
CP010761	Phaeobacter inhibens strain P80 plasmid pP80_e, complete sequence	0 crisprs	csa3	0
CP010759	Phaeobacter inhibens strain P80 plasmid pP80_c, complete sequence	0 crisprs	NA	0
CP010762	Phaeobacter inhibens strain P80 plasmid pP80_f, complete sequence	0 crisprs	NA	0
CP010765	Phaeobacter inhibens strain P80 plasmid pP80_i, complete sequence	0 crisprs	NA	0
CP010763	Phaeobacter inhibens strain P80 plasmid pP80_g, complete sequence	0 crisprs	NA	0
CP010758	Phaeobacter inhibens strain P80 plasmid pP80_b, complete sequence	0 crisprs	NA	0
CP010764	Phaeobacter inhibens strain P80 plasmid pP80_h, complete sequence	0 crisprs	NA	0
CP010756	Phaeobacter inhibens strain P80 chromosome, complete genome	0 crisprs	WYL,csa3,casR,RT,cas3,DEDDh	3
CP010760	Phaeobacter inhibens strain P80 plasmid pP80_d, complete sequence	0 crisprs	csa3,WYL	0
CP010766	Phaeobacter inhibens strain P80 plasmid pP80_k, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1279889 : 1298355

Moraxella_phage(33.33%)

tail,protease,capsid,tRNA,portal,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR19349.1\|1279889_1281020_+\|tRNA	queuine tRNA-ribosyltransferase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.0e-108	54.4
AUR19350.1\|1281097_1281793_+	hypothetical protein	NA	NA	NA	NA
AUR19351.1\|1281780_1282242_+	hypothetical protein	NA	NA	NA	NA
AUR19352.1\|1282504_1282657_+	hypothetical protein	NA	NA	NA	NA
AUR19353.1\|1282948_1285363_+\|protease	ATP-dependent protease La	A0A0R6PGP8	Moraxella_phage	9.4e-204	49.4
AUR19354.1\|1285582_1285990_-	hypothetical protein	NA	NA	NA	NA
AUR19355.1\|1286056_1286479_-	putative transcriptional regulator	NA	NA	NA	NA
AUR19356.1\|1286562_1287600_+	acetyltransferase and methytransferase domain-containing protein	NA	NA	NA	NA
AUR19357.1\|1287789_1288062_-	YrhK-like protein	NA	NA	NA	NA
AUR19358.1\|1288309_1289365_-	leucine dehydrogenase Ldh	NA	NA	NA	NA
AUR19359.1\|1289494_1289950_+	transcriptional regulator, AsnC family	NA	NA	NA	NA
AUR19360.1\|1290320_1291760_+	tyrosine recombinase XerC	NA	NA	NA	NA
AUR19361.1\|1291835_1293014_+\|portal	phage portal protein, HK97 family	Q8W6U7	Burkholderia_virus	3.5e-42	33.0
AUR19362.1\|1293010_1293322_+	hypothetical protein	NA	NA	NA	NA
AUR19363.1\|1293290_1294007_+\|tail	Phage-related protein, tail component	NA	NA	NA	NA
AUR19364.1\|1294003_1295545_+\|capsid	phage major capsid protein, HK97 family	A0A2I4R671	Erysipelothrix_phage	2.2e-41	33.6
AUR19365.1\|1295621_1296176_+	hypothetical protein	NA	NA	NA	NA
AUR19366.1\|1296175_1296526_+	HNH endonuclease	Q38456	Bacillus_phage	3.7e-16	40.2
AUR19367.1\|1296515_1296902_+	hypothetical protein	NA	NA	NA	NA
AUR19368.1\|1296901_1297198_+\|head,tail	Phage gp6-like head-tail connector protein	A0A0R6PKP1	Moraxella_phage	5.8e-07	35.3
AUR19369.1\|1297184_1297619_+	phage protein, HK97 gp10 family	NA	NA	NA	NA
AUR19370.1\|1297615_1298035_+	hypothetical protein	NA	NA	NA	NA
AUR19371.1\|1298037_1298355_+\|head,tail	putative phage head-tail adaptor	NA	NA	NA	NA

DBSCAN-SWA_2

1432324 : 1499057

uncultured_Mediterranean_phage(17.65%)

tail,terminase,protease,capsid,tRNA,portal,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR19493.1\|1432324_1433617_-\|tRNA	seryl-tRNA synthetase SerS	A0A1B1IVT2	uncultured_Mediterranean_phage	2.5e-86	46.9
AUR19494.1\|1433734_1435210_-	putative low-complexity protein	NA	NA	NA	NA
AUR19495.1\|1435386_1435671_+	preprotein translocase YajC-like protein	A0A1B1IVR5	uncultured_Mediterranean_phage	8.9e-21	54.9
AUR19496.1\|1435705_1437367_+	protein-export membrane protein SecD	NA	NA	NA	NA
AUR19497.1\|1437368_1438337_+	protein-export membrane protein SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.4e-60	49.6
AUR19498.1\|1438505_1438859_+	hypothetical protein	NA	NA	NA	NA
AUR19499.1\|1438954_1439581_+	cytochrome c biogenesis ATP-binding export protein CcmA	G9BWD6	Planktothrix_phage	3.9e-08	29.2
AUR19500.1\|1439589_1440234_+	heme exporter protein B	NA	NA	NA	NA
AUR19501.1\|1440279_1441011_+	heme exporter protein C	NA	NA	NA	NA
AUR19502.1\|1441007_1441181_+	heme exporter protein CcmD	NA	NA	NA	NA
AUR19503.1\|1441173_1441713_+	thiol:disulfide interchange protein CcmG	NA	NA	NA	NA
AUR19504.1\|1441788_1442088_-	hypothetical protein	NA	NA	NA	NA
AUR19505.1\|1442366_1445054_-	aconitate hydratase AcnA	NA	NA	NA	NA
AUR19506.1\|1445299_1446031_+	putative secreted protein	NA	NA	NA	NA
AUR19507.1\|1446045_1446981_-	putative lipid A biosynthesis acyltransferase	NA	NA	NA	NA
AUR19508.1\|1447370_1448564_-	Flagellar motor switch protein	NA	NA	NA	NA
AUR19509.1\|1448640_1449246_-	putative O-linked N-acetylglucosamine transferase, SPINDLY family	NA	NA	NA	NA
AUR19510.1\|1449434_1450739_-	adenylosuccinate lyase PurB	A0A1B3B081	Gordonia_phage	6.6e-18	30.2
AUR19511.1\|1451013_1452270_-	putative redox protein, regulator of disulfide bond formation	NA	NA	NA	NA
AUR19512.1\|1452365_1452926_+	NTP pyrophosphohydrolase	NA	NA	NA	NA
AUR19513.1\|1453004_1454402_-	protein DddP (metallopeptidase, family M24), DMSP degrading	NA	NA	NA	NA
AUR19514.1\|1454544_1455303_+	hypothetical protein	NA	NA	NA	NA
AUR19515.1\|1455346_1456384_-	hypothetical protein	NA	NA	NA	NA
AUR19516.1\|1456905_1458312_-	glutamine synthetase GlnA	NA	NA	NA	NA
AUR19517.1\|1458405_1458744_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
AUR19518.1\|1458936_1460571_+	yjeF, hydroxyethylthiazole kinase-related protein/yjeF	NA	NA	NA	NA
AUR19519.1\|1460935_1463140_-	putative methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.3e-13	28.4
AUR19520.1\|1463545_1464676_+	Outer membrane protein (porin)	NA	NA	NA	NA
AUR19521.1\|1464947_1466279_+	trigger factor Tig	NA	NA	NA	NA
AUR19522.1\|1466491_1467760_-	Hemolysin-type calcium-binding protein repeat protein (2 copies)	M4SNJ8	Pseudoalteromonas_phage	3.6e-05	25.9
AUR19523.1\|1468058_1470017_-	2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB	NA	NA	NA	NA
AUR19524.1\|1470166_1470637_-	transglycosylase-like protein	NA	NA	NA	NA
AUR19525.1\|1470948_1471131_-	hypothetical protein	NA	NA	NA	NA
AUR19526.1\|1471360_1471978_-	50S ribosomal protein L9	NA	NA	NA	NA
AUR19527.1\|1471990_1472218_-	30S ribosomal protein S18	NA	NA	NA	NA
AUR19528.1\|1472246_1472600_-	30S ribosomal protein S6	NA	NA	NA	NA
AUR19529.1\|1472664_1472904_-	hypothetical protein	NA	NA	NA	NA
AUR19530.1\|1473235_1473832_+	hypothetical protein	NA	NA	NA	NA
AUR19531.1\|1474057_1474633_+	hypothetical protein	NA	NA	NA	NA
AUR19532.1\|1474813_1475086_-	hypothetical protein	NA	NA	NA	NA
AUR19533.1\|1475265_1476555_-	Cytochrome B561	NA	NA	NA	NA
AUR19534.1\|1476740_1477673_+	malonyl CoA-acyl carrier protein transacylase FabD	NA	NA	NA	NA
AUR19535.1\|1477759_1478497_+	3-oxoacyl-[acyl-carrier-protein] reductase FabG	NA	NA	NA	NA
AUR19536.1\|1478616_1478781_+	hypothetical protein	NA	NA	NA	NA
AUR19537.1\|1479131_1479365_+	acyl carrier protein AcpP	A0A2C9CX86	Yersinia_phage	7.3e-05	52.1
AUR19538.1\|1479529_1480273_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase-like protein	NA	NA	NA	NA
AUR19539.1\|1480493_1481507_-	bacterial type IV pilus assembly (PilZ) protein-like protein	NA	NA	NA	NA
AUR19540.1\|1481765_1483031_+	3-oxoacyl-[acyl-carrier-protein] synthase FabF	NA	NA	NA	NA
AUR19541.1\|1483030_1484185_+	putative aminodeoxychorismate lyase	NA	NA	NA	NA
AUR19542.1\|1484477_1484819_+	DNA integration/recombination/inversion protein	NA	NA	NA	NA
AUR19543.1\|1484948_1486082_+\|terminase	putative gene transfer agent large terminase	A0A0K1LMR9	Caulobacter_phage	9.0e-64	42.8
AUR19544.1\|1486285_1487479_+\|portal	putative gene transfer agent portal protein	W8ECU7	Geobacillus_phage	5.4e-59	36.6
AUR19545.1\|1487471_1487690_+	hypothetical protein	NA	NA	NA	NA
AUR19546.1\|1487722_1488343_+\|head,protease	putative gene transfer agent prohead protease	A0A0U2BX10	Paracoccus_phage	1.4e-31	53.3
AUR19547.1\|1488391_1489576_+\|capsid	gene transfer agent major capsid protein	B0VK33	Azospirillum_phage	2.0e-61	41.7
AUR19548.1\|1489755_1490403_+	putative gene transfer agent protein	NA	NA	NA	NA
AUR19549.1\|1490399_1490771_+\|head,tail	putative gene transfer agent head-tail adaptor	NA	NA	NA	NA
AUR19550.1\|1490767_1491175_+	putative gene transfer agent protein	NA	NA	NA	NA
AUR19551.1\|1491277_1491691_+\|tail	putative gene transfer agent major tail protein	NA	NA	NA	NA
AUR19552.1\|1491704_1492109_+	hypothetical protein	NA	NA	NA	NA
AUR19553.1\|1492105_1492363_+	gene transfer agent (GTA) protein	NA	NA	NA	NA
AUR19554.1\|1492355_1493012_+\|tail	putative gene transfer agent tail tape measure protein	D6PFD6	uncultured_phage	1.5e-10	33.5
AUR19555.1\|1493027_1493660_+	putative gene transfer agent protein	A0A0B5A2K3	Paracoccus_phage	2.9e-56	49.5
AUR19556.1\|1493659_1494610_+	hypothetical protein	A0A0K0PVK1	Roseobacter_phage	3.9e-52	37.3
AUR19557.1\|1494606_1495077_+	putative phage cell wall peptidase, NlpC/P60 family	F4YXU4	Roseobacter_phage	2.5e-28	44.0
AUR19558.1\|1495076_1499057_+	putative gene transfer agent protein	A0A0B5A7K5	Paracoccus_phage	4.4e-222	37.2

DBSCAN-SWA_3

1674182 : 1706172

Ruegeria_phage(21.43%)