CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP012135	Bordetella pertussis strain J014, complete genome	5 crisprs	csa3,cas3,DinG,DEDDh	0	0	27	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP012135_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012135_1

250591-250675

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012135_1

>merge|CP012135|1|250591-250675|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAGGGTGCCTGTCCCCGCGGGGACAG

>CP012135|1|1|250591-250675|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCATGGCGTATGACAG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP012135.1\|AUR57881.1\|247881_248580_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|319796
CP012135.1\|AUR57879.1\|246037_246529_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase	unknown	unknown	gnl\|CDD\|172582
CP012135.1\|AUR57889.1\|257792_258773_-\|membrane-protein	unknown	unknown	gnl\|CDD\|223751
CP012135.1\|AUR57884.1\|250685_251627_-\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	unknown	unknown	gnl\|CDD\|234626
CP012135.1\|AUR57877.1\|241549_243652_+\|membrane-protein	unknown	unknown	gnl\|CDD\|129868
CP012135.1\|AUR57882.1\|248576_249278_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|236347
CP012135.1\|AUR57883.1\|249530_250580_+\|phosphoribosylaminoimidazole-synthetase	unknown	unknown	gnl\|CDD\|235439
CP012135.1\|AUR61054.1\|253617_254238_+\|membrane-protein	unknown	unknown	gnl\|CDD\|182775
CP012135.1\|AUR57875.1\|239548_240292_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP012135.1\|AUR57890.1\|258908_259892_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270295
CP012135.1\|AUR57876.1\|240335_241379_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
CP012135.1\|AUR57887.1\|255696_256233_-\|ATPase	unknown	unknown	gnl\|CDD\|223873
CP012135.1\|AUR57880.1\|246525_247881_-\|PcnB	unknown	unknown	gnl\|CDD\|130997
CP012135.1\|AUR57874.1\|238776_239532_+\|gamma-hydroxybutyrate-dehydrogenase	unknown	unknown	gnl\|CDD\|185358
CP012135.1\|AUR57891.1\|259956_260856_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
CP012135.1\|AUR57878.1\|245062_246019_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270296
CP012135.1\|AUR57886.1\|254380_255766_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
CP012135.1\|AUR57888.1\|256384_257776_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
CP012135.1\|AUR57892.1\|260962_262717_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
CP012135.1\|AUR57885.1\|251623_253513_-\|DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|234630

Protein	Function_ID	Function_description	E-value
CP012135.1\|AUR57881.1\|247881_248580_-\|hypothetical-protein	gnl\|CDD\|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.91431e-64
CP012135.1\|AUR57879.1\|246037_246529_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase	gnl\|CDD\|172582	PRK14092, PRK14092, 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase.	2.78166e-87
CP012135.1\|AUR57889.1\|257792_258773_-\|membrane-protein	gnl\|CDD\|223751	COG0679, COG0679, Predicted permeases [General function prediction only].	1.13912e-41
CP012135.1\|AUR57884.1\|250685_251627_-\|tRNA-delta(2)-isopentenylpyrophosphate-transferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	4.17279e-156
CP012135.1\|AUR57877.1\|241549_243652_+\|membrane-protein	gnl\|CDD\|129868	TIGR00786, TRAP_transporter_permease_protein_SiaT, TRAP transporter, DctM subunit. The Tripartite ATP-independent Periplasmic Transporter (TRAP-T) Family (TC 2.A.56)- DctM subunit TRAP-T family permeases generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. Only one member of the family has been both sequenced and functionally characterized. This system is the DctPQM system of Rhodobacter capsulatus (Forward et al., 1997). DctP is a periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor that is biochemically well-characterized. DctQ is an integral cytoplasmic membrane protein with 4 putative transmembrane a-helical spanners (TMSs). DctM is a second integral cytoplasmic membrane protein with 12 putative TMSs. These proteins have been shown to be both necessary and sufficient for the proton motive force-dependent uptake of dicarboxylates into R. capsulatus. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.77055e-96
CP012135.1\|AUR57882.1\|248576_249278_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|236347	PRK08903, PRK08903, DnaA regulatory inactivator Hda; Validated.	2.81236e-100
CP012135.1\|AUR57883.1\|249530_250580_+\|phosphoribosylaminoimidazole-synthetase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP012135.1\|AUR61054.1\|253617_254238_+\|membrane-protein	gnl\|CDD\|182775	PRK10847, PRK10847, DedA family protein.	8.25718e-70
CP012135.1\|AUR57875.1\|239548_240292_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	5.58304e-45
CP012135.1\|AUR57890.1\|258908_259892_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270295	cd13577, PBP2_BugE_Glu, Glutamate transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	4.35876e-158
CP012135.1\|AUR57876.1\|240335_241379_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.99378e-85
CP012135.1\|AUR57887.1\|255696_256233_-\|ATPase	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.28113e-54
CP012135.1\|AUR57880.1\|246525_247881_-\|PcnB	gnl\|CDD\|130997	TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB family of poly(A) polymerases (also known as plasmid copy number protein). These enzymes sequentially add adenosine nucleotides to the 3' end of RNAs, targeting them for degradation by the cell. This was originally described for anti-sense RNAs, but was later demonstrated for mRNAs as well. Members of this family are as yet limited to the gamma- and beta-proteobacteria, with putative members in the Chlamydiacae and spirochetes. This family has homology to tRNA nucleotidyltransferase (cca).	4.58369e-147
CP012135.1\|AUR57874.1\|238776_239532_+\|gamma-hydroxybutyrate-dehydrogenase	gnl\|CDD\|185358	PRK15461, PRK15461, sulfolactaldehyde 3-reductase.	1.19571e-122
CP012135.1\|AUR57891.1\|259956_260856_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.62875e-38
CP012135.1\|AUR57878.1\|245062_246019_+\|hypothetical-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	6.01101e-118
CP012135.1\|AUR57886.1\|254380_255766_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	1.25625e-84
CP012135.1\|AUR57888.1\|256384_257776_+\|fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP012135.1\|AUR57892.1\|260962_262717_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
CP012135.1\|AUR57885.1\|251623_253513_-\|DNA-mismatch-repair-protein	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0

>CP012135.1|AUR57883.1|249530_250580_+|phosphoribosylaminoimidazole-synthetase
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWNRHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAGFAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDRHGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVAATLREQGEIVNRIGEIVPQQDGMAQTVVV
>CP012135.1|AUR57882.1|248576_249278_-|DnaA-regulatory-inactivator-Hda
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELAEADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLSDADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>CP012135.1|AUR57881.1|247881_248580_-|hypothetical-protein
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAWHEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>CP012135.1|AUR57880.1|246525_247881_-|PcnB
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNATPEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHTEEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLLTCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQGEHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLAQWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>CP012135.1|AUR57879.1|246037_246529_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIEPLR
>CP012135.1|AUR57878.1|245062_246019_+|hypothetical-protein
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVARAAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGIQALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLPGFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>CP012135.1|AUR57877.1|241549_243652_+|membrane-protein
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEISGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTPQWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACAWAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERAWSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMIERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYTLREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAGIFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIELGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>CP012135.1|AUR57876.1|240335_241379_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQIATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSKDPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPINGWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWNKRAKQVGFDGPAYLDRVRTTLGKSASN
>CP012135.1|AUR57875.1|239548_240292_-|GntR-family-transcriptional-regulator
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEGLIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQLLDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLADAAATAE
>CP012135.1|AUR57874.1|238776_239532_+|gamma-hydroxybutyrate-dehydrogenase
MLPTATHIQAALEGADGALQGMGPGALFINMSTILPQETDLIAQRLAERGMRMLDSPVGRSAMEAQRGTLLILASGSAQDKARARDALLCMGNQVIDCGEVGGGSRVKVVNNFMGISLNALTAEALTLAEASGLSVELALEVMRGTIAGLGHMNITYPNKVLRGDLSAGFQVDLAHKDLGLALELAARSRACVPMGSAAFQSYTAARAQGRGGQDYSAIYPVMRSLSGLPEALPYQVDTPVEADPFGAAAR
>CP012135.1|AUR57884.1|250685_251627_-|tRNA-delta(2)-isopentenylpyrophosphate-transferase
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRADALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQRIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGLPSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>CP012135.1|AUR57885.1|251623_253513_-|DNA-mismatch-repair-protein
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHATSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKFLRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPTAARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQVVGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGIPATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRALDDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSRLLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>CP012135.1|AUR61054.1|253617_254238_+|membrane-protein
MVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISGNTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALLWVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>CP012135.1|AUR57886.1|254380_255766_-|N-acetylmuramoyl-L-alanine-amidase
MVERDCPPAHGALSPRAAARRRLISVAATLLVLPVVPRLAHAATILAVRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLKQSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPALPAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLHVRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTTAQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRYFTANPPLARVGDVS
>CP012135.1|AUR57887.1|255696_256233_-|ATPase
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYKVSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNAIVPPPTARSLPAPPPADA
>CP012135.1|AUR57888.1|256384_257776_+|fumarate-hydratase
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVIAGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVLPALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQFSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIMPGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITELVERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>CP012135.1|AUR57889.1|257792_258773_-|membrane-protein
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPISAGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANVAAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIGWMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAAGLGAPN
>CP012135.1|AUR57890.1|258908_259892_+|ABC-transporter-substrate-binding-protein
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGASEAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVKKQNIKLD
>CP012135.1|AUR57891.1|259956_260856_-|LysR-family-transcriptional-regulator
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRRLAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSLGHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAITARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>CP012135.1|AUR57892.1|260962_262717_+|gamma-glutamyltransferase
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAIIAAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLELAHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIAREGADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARMRPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIEVPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAGKPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQGIVIGPHGLAGGADPRREGLALGD

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Crispr_ID: CP012135_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012135_2

432034-432127

Orphan

Consensus_repeat	Method
GTGCCTGTCCCCGCCGGGACAGGCAC	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of CP012135_2

>merge|CP012135|2|432034-432127|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCACCCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGCGTGCCTGTCCCCGCCGGGACAGGCAC

>CP012135|2|2|432034-432127|CRISPRCasFinder
GTGCCTGTCCCCGCCGGGACAGGCAC	CCGGGCCCAGGAAAACCCCCACGCTGCGCCCGCTGTGCGGGC
GTGCCTGTCCCCGCCGGGACAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP012135.1\|AUR58047.1\|431404_431803_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|234569
CP012135.1\|AUR58051.1\|436405_436924_-\|methyltransferase	unknown	unknown	gnl\|CDD\|224204
CP012135.1\|AUR58042.1\|422321_423527_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|129314
CP012135.1\|AUR58043.1\|423523_425035_+\|TRAP-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270238
CP012135.1\|AUR58048.1\|432213_432684_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
CP012135.1\|AUR58049.1\|432772_433117_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225984
CP012135.1\|AUR58053.1\|437985_439218_+\|acetyl-CoA-acetyltransferase	unknown	unknown	gnl\|CDD\|367110
CP012135.1\|AUR58039.1\|419373_420432_-\|glycosyl-transferase-family-2	unknown	unknown	gnl\|CDD\|133030
CP012135.1\|AUR58056.1\|442147_443320_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP012135.1\|AUR58045.1\|427143_427878_-\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
CP012135.1\|AUR58054.1\|439210_439996_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|181723
CP012135.1\|AUR58046.1\|430322_431273_+\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR58040.1\|420561_421056_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP012135.1\|AUR61062.1\|425050_426364_-\|short-chain-fatty-acid-transporter	unknown	unknown	gnl\|CDD\|224942
CP012135.1\|AUR58044.1\|426554_426734_-\|membrane-protein	unknown	unknown	gnl\|CDD\|377342
CP012135.1\|AUR61063.1\|441044_441962_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
CP012135.1\|AUR58055.1\|440062_441034_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP012135.1\|AUR58052.1\|437034_437790_+\|membrane-protein	unknown	unknown	gnl\|CDD\|223930
CP012135.1\|AUR58041.1\|421148_422126_+\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR58050.1\|433216_434617_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
CP012135.1\|AUR58047.1\|431404_431803_-\|elongation-factor-G	gnl\|CDD\|234569	PRK00007, PRK00007, elongation factor G; Reviewed.	1.37761e-90
CP012135.1\|AUR58051.1\|436405_436924_-\|methyltransferase	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	1.12064e-44
CP012135.1\|AUR58042.1\|422321_423527_+\|ABC-transporter-permease	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	1.2444e-106
CP012135.1\|AUR58043.1\|423523_425035_+\|TRAP-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270238	cd13520, PBP2_TAXI_TRAP, Substrate binding domain of TAXI proteins of the tripartite ATP-independent periplasmic transporters; the type 2 periplasmic binding protein fold. This group includes Thermus thermophilus GluBP (TtGluBP) of TAXI-TRAP family and closely related proteins. TRAP transporters are ubiquitous in prokaryotes, but absent from eukaryotes. They are comprised of an SBP (substrate-binding protein) of the DctP or TAXI families and two unequally sized integral membrane components. Although TtGluBP is predicted to be an L-glutamate and/or an L-glutamine-binding protein, the substrate spectrum of TAXI proteins remains to be defined. A sequence-homology search also shows that TtGluBP shares low sequence homology with putative immunogenic proteins of uncharacterized function. The substrate-binding domain of TAXI proteins belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and tworeceptor cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.13066e-82
CP012135.1\|AUR58048.1\|432213_432684_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.38587e-30
CP012135.1\|AUR58049.1\|432772_433117_-\|hypothetical-protein	gnl\|CDD\|225984	COG3453, COG3453, Uncharacterized protein conserved in bacteria [Function unknown].	3.40043e-35
CP012135.1\|AUR58053.1\|437985_439218_+\|acetyl-CoA-acetyltransferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	8.36236e-118
CP012135.1\|AUR58039.1\|419373_420432_-\|glycosyl-transferase-family-2	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.18053e-89
CP012135.1\|AUR58056.1\|442147_443320_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	4.27565e-82
CP012135.1\|AUR58045.1\|427143_427878_-\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	2.40573e-142
CP012135.1\|AUR58054.1\|439210_439996_+\|enoyl-CoA-hydratase	gnl\|CDD\|181723	PRK09245, PRK09245, crotonase/enoyl-CoA hydratase family protein.	5.15941e-155
CP012135.1\|AUR58046.1\|430322_431273_+\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.02206e-23
CP012135.1\|AUR58040.1\|420561_421056_+\|acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.34959e-07
CP012135.1\|AUR61062.1\|425050_426364_-\|short-chain-fatty-acid-transporter	gnl\|CDD\|224942	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism].	6.57351e-166
CP012135.1\|AUR58044.1\|426554_426734_-\|membrane-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	0.00323203
CP012135.1\|AUR61063.1\|441044_441962_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.19908e-60
CP012135.1\|AUR58055.1\|440062_441034_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	2.06741e-117
CP012135.1\|AUR58052.1\|437034_437790_+\|membrane-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.14565e-78
CP012135.1\|AUR58041.1\|421148_422126_+\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.0826e-23
CP012135.1\|AUR58050.1\|433216_434617_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.43796e-109

>CP012135.1|AUR58047.1|431404_431803_-|elongation-factor-G
MTRRTSIERYRNIGISAHIDAGKATTTERILFYTGITHKLGEVHEGAATMDWMEQEQGRGITITSAATTAFWRGMAGNYPEHRINIIDTPGHVDFTIEVERSMRVLDGACMVYDSVGGVQEVATVMVVLPGQ
>CP012135.1|AUR58046.1|430322_431273_+|integrase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>CP012135.1|AUR58045.1|427143_427878_-|DNA-polymerase-III-subunit-epsilon
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAESGQPG
>CP012135.1|AUR58044.1|426554_426734_-|membrane-protein
MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>CP012135.1|AUR61062.1|425050_426364_-|short-chain-fatty-acid-transporter
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLVKRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLTIATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENSRLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDSGLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFWALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>CP012135.1|AUR58043.1|423523_425035_+|TRAP-ABC-transporter-substrate-binding-protein
MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKKDLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVTRQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPLITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIALGPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDKLVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLSIPLHDGAVEAFEKLGAPPLPEGR
>CP012135.1|AUR58042.1|422321_423527_+|ABC-transporter-permease
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGLTADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMALAMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVEDAPISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYAGWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGGM
>CP012135.1|AUR58041.1|421148_422126_+|integrase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHSYMVRADLAG
>CP012135.1|AUR58040.1|420561_421056_+|acetyltransferase
MPQSYIVRTMRPADVEAVLRVQAAVYPASLLESAALFQNRIEIAPATCQVALDGQDLIGYLIAYPWDAGLPPALDRSLERLPGAADTWFVHDCAVLPAAQGGGVAAALLAGGRAQARRLGLRRASLVALAQAVGYWLRHGYQPLADSDALRAKLAGYGDGARYM
>CP012135.1|AUR58039.1|419373_420432_-|glycosyl-transferase-family-2
MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPGLNEAANLRVLVPALRACLEQWCASWEIIVVDDGSTDDTAELMAQWSAVEGIRYVQLSRNFGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDDEPWFKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFKSQAVPYTPQARRHGASHFSAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGYLVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEYVARIFDEVKGRPLFIARQRRGRAKRAAKARSQ
>CP012135.1|AUR58048.1|432213_432684_-|universal-stress-protein
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDRAETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>CP012135.1|AUR58049.1|432772_433117_-|hypothetical-protein
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVARFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>CP012135.1|AUR58050.1|433216_434617_-|GntR-family-transcriptional-regulator
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTALASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQQLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLDRLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKMLAASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEPHAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>CP012135.1|AUR58051.1|436405_436924_-|methyltransferase
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVGDLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAARDDKRVVAQPPP
>CP012135.1|AUR58052.1|437034_437790_+|membrane-protein
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVFELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHIPIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRAREGRGAGAAGG
>CP012135.1|AUR58053.1|437985_439218_+|acetyl-CoA-acetyltransferase
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGREALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIPRYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYATRNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTMASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAARQLPEGTDHD
>CP012135.1|AUR58054.1|439210_439996_+|enoyl-CoA-hydratase
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGEPVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVGMSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQALAHHTQEHAGALDAHLSRKRG
>CP012135.1|AUR58055.1|440062_441034_+|ABC-transporter-substrate-binding-protein
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQAVATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASGTATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQESGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANIQQE
>CP012135.1|AUR61063.1|441044_441962_-|LysR-family-transcriptional-regulator
MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQRAAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITLLQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGLAIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>CP012135.1|AUR58056.1|442147_443320_+|acyl-CoA-dehydrogenase
MGAILGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARFVLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLNGRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSGWRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLVKDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR

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Crispr_ID: CP012135_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012135_3

997401-997495

Orphan

Consensus_repeat	Method
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012135_3

>merge|CP012135|3|997401-997495|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTTATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAGTAAAAGGGCACCCGCAAGGGTGCCTTTTT

>CP012135|3|3|997401-997495|CRISPRCasFinder
TAAAAGGGCACCCGCAAGGGTGTCCTTTT	ATTGCGAAAAGATATCTGGAAGAAAGCCTTTTCAGAG
TAAAAGGGCACCCGCAAGGGTGCCTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP012135.1\|AUR58536.1\|1006272_1009452_+\|multidrug-transporter	unknown	unknown	gnl\|CDD\|273335
CP012135.1\|AUR58523.1\|987880_988084_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131194
CP012135.1\|AUR58532.1\|998365_999316_-\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR58534.1\|1003132_1003705_-\|chorismate--pyruvate-lyase	unknown	unknown	gnl\|CDD\|225703
CP012135.1\|AUR58535.1\|1003764_1004496_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|224108
CP012135.1\|AUR58537.1\|1009448_1010831_+\|multidrug-transporter	unknown	unknown	gnl\|CDD\|273830
CP012135.1\|AUR58525.1\|988894_989677_+\|sulfate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226665
CP012135.1\|AUR58530.1\|996953_997334_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP012135.1\|AUR58538.1\|1010900_1011152_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225170
CP012135.1\|AUR61095.1\|1000607_1001624_-\|transposase	unknown	unknown	gnl\|CDD\|376773
CP012135.1\|AUR58526.1\|989701_990766_+\|sulfate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213263
CP012135.1\|AUR58529.1\|995775_996648_-\|multidrug-DMT-transporter-permease	unknown	unknown	gnl\|CDD\|274527
CP012135.1\|AUR58527.1\|993959_995234_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|275263
CP012135.1\|AUR58533.1\|999420_1000470_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381320
CP012135.1\|AUR58528.1\|995387_995768_+\|membrane-protein	unknown	unknown	unknown
CP012135.1\|AUR61094.1\|991563_992472_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP012135.1\|AUR58522.1\|986830_987865_+\|sulfate-transporter-subunit	unknown	unknown	gnl\|CDD\|224529
CP012135.1\|AUR61096.1\|1004547_1005465_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP012135.1\|AUR58531.1\|997583_998270_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239518
CP012135.1\|AUR58524.1\|988105_988780_+\|sulfate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|131194

Protein	Function_ID	Function_description	E-value
CP012135.1\|AUR58536.1\|1006272_1009452_+\|multidrug-transporter	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
CP012135.1\|AUR58523.1\|987880_988084_+\|hypothetical-protein	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	4.38349e-06
CP012135.1\|AUR58532.1\|998365_999316_-\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	8.66858e-23
CP012135.1\|AUR58534.1\|1003132_1003705_-\|chorismate--pyruvate-lyase	gnl\|CDD\|225703	COG3161, UbiC, 4-hydroxybenzoate synthetase (chorismate lyase) [Coenzyme metabolism].	1.05194e-17
CP012135.1\|AUR58535.1\|1003764_1004496_+\|pseudouridylate-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	7.73356e-72
CP012135.1\|AUR58537.1\|1009448_1010831_+\|multidrug-transporter	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	9.9815e-102
CP012135.1\|AUR58525.1\|988894_989677_+\|sulfate-ABC-transporter-permease	gnl\|CDD\|226665	COG4208, CysW, ABC-type sulfate transport system, permease component [Inorganic ion transport and metabolism].	8.42883e-141
CP012135.1\|AUR58530.1\|996953_997334_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.34063e-62
CP012135.1\|AUR58538.1\|1010900_1011152_-\|hypothetical-protein	gnl\|CDD\|225170	COG2261, COG2261, Predicted membrane protein [Function unknown].	2.42408e-12
CP012135.1\|AUR61095.1\|1000607_1001624_-\|transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	2.74666e-23
CP012135.1\|AUR58526.1\|989701_990766_+\|sulfate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213263	cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter. Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	3.07125e-165
CP012135.1\|AUR58529.1\|995775_996648_-\|multidrug-DMT-transporter-permease	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	3.74356e-26
CP012135.1\|AUR58527.1\|993959_995234_+\|radical-SAM-protein	gnl\|CDD\|275263	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B. Members of this family are the downstream member (B) of a pair of tandem-encoded radical SAM enzymes. Most of these radical SAM gene pairs have an additional upstream regulatory gene in the MarR family. Examples of high sequence identity (over 96 percent) from cassettes in several Treponema species of the oral cavity to those in multiple Firmicutes in the gut microbiome suggest recent lateral gene transfer, as might be expected for antibiotic resistance genes. The function is unknown.	4.71758e-24
CP012135.1\|AUR58533.1\|999420_1000470_+\|aldo/keto-reductase	gnl\|CDD\|381320	cd19094, AKR_Tas-like, Escherichia coli Tas protein and similar proteins. Escherichia coli Tas protein is the prototype of this family. It is an NADP(H)-dependent aldo-keto reductase that catalyzes the reversible reduction of ketones to the respective alcohols using NADP(H) as a hydride donor.	0
CP012135.1\|AUR61096.1\|1004547_1005465_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.56316e-67
CP012135.1\|AUR61094.1\|991563_992472_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP012135.1\|AUR58522.1\|986830_987865_+\|sulfate-transporter-subunit	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
CP012135.1\|AUR58531.1\|997583_998270_+\|NUDIX-hydrolase	gnl\|CDD\|239518	cd03426, CoAse, Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.	2.60589e-72
CP012135.1\|AUR58524.1\|988105_988780_+\|sulfate-ABC-transporter-permease	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	5.60551e-119

>CP012135.1|AUR58530.1|996953_997334_+|50S-ribosomal-protein-L19
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQLYSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>CP012135.1|AUR58529.1|995775_996648_-|multidrug-DMT-transporter-permease
MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSLCLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPATTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVIGLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNGAPLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>CP012135.1|AUR58528.1|995387_995768_+|membrane-protein
MTIATTLDAATSLPTAVPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLSTKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>CP012135.1|AUR58527.1|993959_995234_+|radical-SAM-protein
MASTEHSFSAGFGSPAAAPAALRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQAEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPINIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRASAPYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRVLHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQLALF
>CP012135.1|AUR61094.1|991563_992472_+|sulfate-adenylyltransferase-subunit-2
MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDARAAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDPKAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQLAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>CP012135.1|AUR58526.1|989701_990766_+|sulfate-ABC-transporter-ATP-binding-protein
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVFQHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDVNQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAIIEAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>CP012135.1|AUR58525.1|988894_989677_+|sulfate-ABC-transporter-permease
MFTEALRKGWQLYLAAIVEPDAWSAIRLTLLVAAIALPVNLVFGVAAAWAVTKFQFRGKQLLITLIDLPFSVSPVVAGMVFVLLFGSQGWFGPWLQDHDWKIVYAVPGVILATLFVTFPFIARELIPLMQAQGSEEEQAALTLGASGWQIFWRVTLPNIKWGLLYGAILCNARAMGEFGAVSVVSGQVRGLTNTMTLHVEILYNEYQFAAAFAVASLLALLALVTLAAKQVVEWRNQRLSPRQAEAPVHAGALAVRPAAA
>CP012135.1|AUR58524.1|988105_988780_+|sulfate-ABC-transporter-permease
MVASYRLTFGASLLAALVNLVFGTIVAWVLVRYRFPGKKIVDVLVDLPFALPTAVAGIALTALYSANGWLGAPLQRWFDLKVAFTPLGIVVALIFIGVPFVVRTVQPVLEDVERELEEAAASLGAGRWQTIRRVLLPALLPALLTGFALAFARAIGEYGSVVFIAGNMPMISEITPLLIISKLEQYDYAGAAAIATVMLALSFALLLVINLLQGWQTRRGGRQP
>CP012135.1|AUR58523.1|987880_988084_+|hypothetical-protein
MSLAIPSGPAPTAARRQRPGVLPGFGISMGYAVLYLSLLVLVLVLVLVLVPLAALPIKSLELGWAGF
>CP012135.1|AUR58522.1|986830_987865_+|sulfate-transporter-subunit
MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRELYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQARSVIDGLDADVVTLALAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTSGGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAWENEAFLAREELGPDKFDIVVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAAQEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGGWRKAQKDHFSDGGTFDQVYQPQRK
>CP012135.1|AUR58531.1|997583_998270_+|NUDIX-hydrolase
MRPLFDPMAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAHLHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAEVFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>CP012135.1|AUR58532.1|998365_999316_-|integrase
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP012135.1|AUR58533.1|999420_1000470_+|aldo/keto-reductase
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRHEVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPIEETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLAMGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKENIESVEVTLSDEVLQGIEAIHARQPNPAP
>CP012135.1|AUR61095.1|1000607_1001624_-|transposase
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQAATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELNRKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQSLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLCFGVLKNRIPYQPNYAMNG
>CP012135.1|AUR58534.1|1003132_1003705_-|chorismate--pyruvate-lyase
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSIDGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRSAFWRAGQPLLVAECFLPAFWSLARAPVAPR
>CP012135.1|AUR58535.1|1003764_1004496_+|pseudouridylate-synthase
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAEKGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSEAGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRADERF
>CP012135.1|AUR61096.1|1004547_1005465_-|LysR-family-transcriptional-regulator
MELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAHEELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLGVLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAILAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>CP012135.1|AUR58536.1|1006272_1009452_+|multidrug-transporter
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRLQTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAEHRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGIEDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISLIVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENREDDDPHGGAQPATHGGQPQ
>CP012135.1|AUR58537.1|1009448_1010831_+|multidrug-transporter
MKPVVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYGAPGQAAAGAPAAADVGWRDFFGDPLLQELLALSLANNRDLRVAALNVEAARLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQLYLAQDETRLATQLTLVAETANAYLTLRADQELLALTRQTLAAQQESYKLTRQSYDLGVATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGIGAQLDQAVALPDGVVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARAAFFPRISLTGSAGTASASLGGLFDAGSGAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDALAGRGTLQEQIRSQELLVQANQRAYDLSQQRYQQGIDNYLSVLDSQRSLYTAQQTLVETRLARLSNLIQLYKALGGGWSERTVAAAQAG
>CP012135.1|AUR58538.1|1010900_1011152_-|hypothetical-protein
MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGFLGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAKKRA

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Crispr_ID: CP012135_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012135_4

1820836-1820963

Orphan

Consensus_repeat	Method
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012135_4

>merge|CP012135|4|1820836-1820963|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCGTGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGCAAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

>CP012135|4|4|1820836-1820963|CRISPRCasFinder
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCATAGCGGGCGCAGCG	TGGGGGCACTACTTTGCCGCTGGGCCGCCCCAAGGC
AAAAAGCCCCCTCGGGGGGCAGCAAGCCCGCGTAGCGGGCGCAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP012135.1\|AUR59166.1\|1812739_1814845_-\|hemin-storage-protein	unknown	unknown	gnl\|CDD\|274867
CP012135.1\|AUR59179.1\|1827820_1828231_+\|scaffolding-protein	unknown	unknown	gnl\|CDD\|183087
CP012135.1\|AUR59175.1\|1823045_1825082_+\|excinuclease-ABC-subunit-B	unknown	unknown	gnl\|CDD\|235395
CP012135.1\|AUR59173.1\|1820986_1821637_-\|LexA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234688
CP012135.1\|AUR59167.1\|1814850_1816836_-\|hemin-storage-protein	unknown	unknown	gnl\|CDD\|274868
CP012135.1\|AUR59177.1\|1826041_1826554_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|273927
CP012135.1\|AUR59178.1\|1826571_1827783_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
CP012135.1\|AUR59169.1\|1817625_1818111_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
CP012135.1\|AUR59165.1\|1811476_1812736_-\|N-glycosyltransferase	unknown	unknown	gnl\|CDD\|236882
CP012135.1\|AUR59172.1\|1819830_1820760_+\|conjugal-transfer-protein-TraC	unknown	unknown	gnl\|CDD\|273608
CP012135.1\|AUR59168.1\|1817044_1817281_+\|membrane-protein	unknown	unknown	unknown
CP012135.1\|AUR59170.1\|1818526_1819429_+\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR59180.1\|1828232_1828556_+\|iron-sulfur-cluster-assembly-protein	unknown	unknown	gnl\|CDD\|213674
CP012135.1\|AUR59181.1\|1828558_1829071_+\|co-chaperone-HscB	unknown	unknown	gnl\|CDD\|235133
CP012135.1\|AUR59164.1\|1810857_1811496_-\|membrane-protein	unknown	unknown	gnl\|CDD\|372868
CP012135.1\|AUR59174.1\|1821765_1822968_-\|aromatic-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|181731
CP012135.1\|AUR59171.1\|1819425_1819785_-\|hypothetical-protein	unknown	unknown	unknown
CP012135.1\|AUR59176.1\|1825334_1825826_+\|protein-tyrosine-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP012135.1\|AUR59163.1\|1809740_1810853_+\|1,2-oxophytodienoate-reductase	unknown	unknown	gnl\|CDD\|239243
CP012135.1\|AUR59182.1\|1829200_1831063_+\|molecular-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360

Protein	Function_ID	Function_description	E-value
CP012135.1\|AUR59166.1\|1812739_1814845_-\|hemin-storage-protein	gnl\|CDD\|274867	TIGR03938, hypothetical_protein_Pcar_2791, poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB. Two well-characterized systems produce polysaccharide based on N-acetyl-D-glucosamine in straight chains with beta-1,6 linkages. These are encoded by the icaADBC operon in Staphylococcus species, where the system is designated polysaccharide intercellular adhesin (PIA), and the pgaABCD operon in Gram-negative bacteria such as E. coli. Both systems include a putative polysaccharide deacetylase. The PgaB protein, described here, contains an additional domain lacking from its Gram-positive counterpart IcaB (TIGR03933). Deacetylation by this protein appears necessary to allow export through the porin PgaA [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
CP012135.1\|AUR59179.1\|1827820_1828231_+\|scaffolding-protein	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	5.84746e-99
CP012135.1\|AUR59175.1\|1823045_1825082_+\|excinuclease-ABC-subunit-B	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP012135.1\|AUR59173.1\|1820986_1821637_-\|LexA-family-transcriptional-regulator	gnl\|CDD\|234688	PRK00215, PRK00215, transcriptional repressor LexA.	1.25833e-105
CP012135.1\|AUR59163.1\|1809740_1810853_+\|1,2-oxophytodienoate-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
CP012135.1\|AUR59177.1\|1826041_1826554_+\|DNA-binding-protein	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	1.00126e-77
CP012135.1\|AUR59178.1\|1826571_1827783_+\|cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
CP012135.1\|AUR59169.1\|1817625_1818111_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	7.77331e-19
CP012135.1\|AUR59165.1\|1811476_1812736_-\|N-glycosyltransferase	gnl\|CDD\|236882	PRK11204, PRK11204, N-glycosyltransferase; Provisional.	0
CP012135.1\|AUR59172.1\|1819830_1820760_+\|conjugal-transfer-protein-TraC	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	4.98806e-78
CP012135.1\|AUR59167.1\|1814850_1816836_-\|hemin-storage-protein	gnl\|CDD\|274868	TIGR03939, PGA_TPR_OMP, poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA. Members of this protein family are the poly-beta-1,6 N-acetyl-D-glucosamine (PGA) export porin PgaA of Gram-negative bacteria. There is no counterpart in the poly-beta-1,6 N-acetyl-D-glucosamine biosynthesis systems of Gram-positive bacteria such as Staphylococcus epidermidis. The PGA polysaccharide adhesin is a critical determinant of biofilm formation. The conserved C-terminal domain of this outer membrane protein is preceded by a variable number of TPR repeats.	1.10027e-119
CP012135.1\|AUR59170.1\|1818526_1819429_+\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.13866e-23
CP012135.1\|AUR59180.1\|1828232_1828556_+\|iron-sulfur-cluster-assembly-protein	gnl\|CDD\|213674	TIGR02011, Protein_yfhF., iron-sulfur cluster assembly protein IscA. This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	4.04388e-54
CP012135.1\|AUR59181.1\|1828558_1829071_+\|co-chaperone-HscB	gnl\|CDD\|235133	PRK03578, hscB, Fe-S protein assembly co-chaperone HscB.	2.55481e-79
CP012135.1\|AUR59164.1\|1810857_1811496_-\|membrane-protein	gnl\|CDD\|372868	pfam13994, PgaD, PgaD-like protein. This family includes the PgaD protein from E. coli. The homopolymer poly-beta-1,6-N-acetyl-D-glucosamine (beta-1,6-GlcNAc; PGA) serves as an adhesin for the maintenance of biofilm structural stability in eubacteria. The pgaABCD operon is required for its synthesis and export. It has been shown that PgaD is essential for this process.	0.00341018
CP012135.1\|AUR59174.1\|1821765_1822968_-\|aromatic-amino-acid-aminotransferase	gnl\|CDD\|181731	PRK09257, PRK09257, aromatic amino acid transaminase.	0
CP012135.1\|AUR59176.1\|1825334_1825826_+\|protein-tyrosine-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.04407e-74
CP012135.1\|AUR59182.1\|1829200_1831063_+\|molecular-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0

>CP012135.1|AUR59172.1|1819830_1820760_+|conjugal-transfer-protein-TraC
MPRSGILTAPVLAVLGTASAPQGIWQAEMNALSKRMGELRLTPAAGGVWARSFAQRQRLDNQVVDRFTQTVGGIEIGADTALPAAEGRWHVGAVAGYSRARRKLAHSARGNSDSLHVGAYATYIGDGGFYLDGIVRVNRYEHDFRADGQRGARVTGKYRANGIGLSLETGRRFTWAGDWFVEPQVEVALFRSGGADYTASNGVRVDVASTKSLLGRAGLQVGRKLDLGNGKLVQPYAKLSWLQEFDGVGKVRTNDIGHDVKLRGGRAELDLGVAAALGRHSSLFASYEYSKGSRLTIPWSFHVGYRYAW
>CP012135.1|AUR59171.1|1819425_1819785_-|hypothetical-protein
MRLVLRPGSRLGARLPLRTRFRLRSGFHPRPGFHLSSGLCIGLGIGIGRGQALRPLLGRVGPRLRRLFGRRRQPAVLAIDGSAVQLGTRNIDVGPAIVDGRAIEIYRCPAVFIVDGPAI
>CP012135.1|AUR59170.1|1818526_1819429_+|integrase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP012135.1|AUR59169.1|1817625_1818111_+|MarR-family-transcriptional-regulator
MPASQDKPDVPPGPYHFSEQVGHLLRRAYQRHVAIFQQTIPDSKLTAAQFVVLCALRDQGACSLVDVVKATAIDQATVRGVIERLKARKLLAVSHDPADRRKVLVTLTPDGRALVEEMVPFAEQITQSTFGGLNPAERVAIVYLLRKMSDADDLVGRQSES
>CP012135.1|AUR59168.1|1817044_1817281_+|membrane-protein
MRRAAKWWGPAATWTLAALLVLLVGHGVVPEAARVSDAPLLHAMAGHAYLLNWAAGLMALIGWGDSLVLYRRTRRRAV
>CP012135.1|AUR59167.1|1814850_1816836_-|hemin-storage-protein
MNNDQTRRTRPASVRGLRRTRLLVAGLAFVGAAAAAAPSVRDQVQEASRSGAANLALDLATEHRALFTPLEYAQLQHAAIAQRLRWSRAETWNLTGPERFATLDAALADGWQLLDSLPLAPEYASLRTAVISDMIYGLGLRGRYADAIKLYEGLRATNTPVHPYVLVSAGNAYAYEERYDEAIVCYEEALAKAGPGDIDRVPTQESLFFAYMDRGRYEDAEQLLQRIEKTSPQYVENAPVAERPNEDYATAQRLRAQYLMYSGETEAGTLAIDALQHDAPFSSGLRNAAASARLGDARPREAKAAFTTALAERPDDIQAMTGLARASMALREYPEAEAIVTTLSERFPESSSVRNLQRDYEVYQSPLLTMDFGGDIGHGGDNSNNDNSTIANREWSLNTMLYTSPISHNYRLFFHQFTGYADLGDGHKSRVRNGAGLEYRRGSIEASTELHQSTGPSGRFGASANVAWLPSDGWRLAANFDSDSNDLPWKAYRAGIHGWSSGVSARYQPTERTYYDVAYQLQHYSDSNTRQTIGATWFQNLWTVPRHSVSTWTSVAYSNNSKTDTECFSPDHDLTAQVTAMYEWRPWRDGQYAFRQRVYATGGVYNQAEHGNSALWQLRLEQVWDLPRQTSITYGVGYGRHSYDGDPENRTLFYLTLNIPF
>CP012135.1|AUR59166.1|1812739_1814845_-|hemin-storage-protein
MTAMHRTLLKWFACCALGLLMLPARAYKVDMLPPPDPDDGLTFRVLCMHDVRDNLRASFADMPDQFAIETRTLTDLFEWIRVKGFNLISMQQIIDSRAGVRPLPPRPILLTFDDGYASTYTKVFPLLKKFNYPAVVAVVTSWTDAPAGTKIRLSPKIEVPHDFFMTWAQLREMAQSGLVELASHSHNLHRGVLANPQGNEQPAASSRQYLPASGRYENDAEYRARVRQDLKTSADLIREHTGVTIRSIVWPYGAHNRDTDQVAAEVGLNIGLTLQPGPNTPDVSLTQIRRSLVDYEVNVATVARAMREPVSYHGQVRPIERIVQVDLDYIYDPDPEQQNRNLGQLIDRMKDLAPSAVYLQAFAYPKGDGDITEVYFPNRHLPMRADLFNRVAWQLKTRAGVMVYAWLPVLTFSVPPGNPAYGKVVQSTTRKPGERGLGSPTRLSPFHPDAHRVISEIYEDLAKAAHFDGLLFHDDAVLDDTEDSSPEALATYQGWGLPPDIAAIRADPKLAQQWSKGKIRYLIDFTMHLRHIVSGYQNDRDMVVARNLYAQPVLDPVSEAWYGQSLPEFLKSYDFVALMAMPNMEGAARPEQWMRQLVAAVARQKGLDRTIFELQARDWRVGKPIDTEILRKQMVQLRSLGAINYGYYPDDFIANHPDAEVLRDVMSLKSTLEKRRLTKAQELSRQTTLYGSASQAEPTQR
>CP012135.1|AUR59165.1|1811476_1812736_-|N-glycosyltransferase
MNDSVKSVLSSFVFYYPFFMSYFWIVGGLLHFFLFEQGRKHRATLLPRVPRVAIVVPCYNEGENVAEVIAHLDRMHYPNYRIIAVNDGSRDNTGALLNELAEQYPRLLVVHQSRNEGKAIGLNTAAQLSDAEFLLCIDGDSLPHPDSITYMLTHFLHAGHVGAVTGNPRIRNRSTVLGRMQVGEFSSIVGLIKRTQQLYGKLMTVSGVMTMFRKQALHQVGYWSPDMQTEDIDISWKLQLAGWTLRYEPRALTWILMPETFRGLFKQRYRWARGGIETALKYAPRMLNPRQILMWPIFLEFSLSVLWAYAMLFLICMAVLGQFVALPPAWQFEIFPRWHGTLLFLTCLAQLFAGCIVDRAYDYRIFRYFADAVWYPIAFWIIGMITTVFALPRVLFRRAQSRARWVSPDRGIKHESVDH
>CP012135.1|AUR59164.1|1810857_1811496_-|membrane-protein
MKALIIDISASPLREYVHQHGVADGLLYGCWYRIVRPLLVILTWVAFSLYIHHSLVTVGGTAAQIAELLVYITVVATMAAALTAWMIVCRFHGWIRARDNEEVGVGLDPEYALPPRWPLPEGANRLLVDHDEAGAIVQVSAWYVPAAIEPVVAAAMASAVMPEAAPLSEPAPVAAALPDEADELAAWSGPPMQRQPDGRIEPTLHDGRALTL
>CP012135.1|AUR59163.1|1809740_1810853_+|1,2-oxophytodienoate-reductase
MSTLFQPLNAGKLRLANRIVMAPLTRNRSPNAVPPPLTATYYAQRASAGLIITEATAISHQGQGYADVPGLYAPEQLAGWRRVTDAVHAAGGTIVVQLWHVGRISHTTLQPGQGAPVAPSAIRAQARTYLVDAQGKGQFADTSEPRALALDELPGIVEDYRRAARAAIDHGFDGVELHAANGYLLDQFLRSGSNHRDDAYGGSIENRARLLLRALDAVCAEVGADRVGIRLSPVTPANDAHDDQPQPLFEYVLRELARRGLAYVHVIEGATGGDRAYQQGPAPFDYAALKAAYRAAGGAGAWMVNNGYDISLAEQKLSSGQADLVAFGKPFIANPDLVARLRQGAALNEGDRDTFYGGGERGYTDYPALA
>CP012135.1|AUR59173.1|1820986_1821637_-|LexA-family-transcriptional-regulator
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQLTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIVVARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>CP012135.1|AUR59174.1|1821765_1822968_-|aromatic-amino-acid-aminotransferase
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKGAQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGLNFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAELDLTMFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDRIRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>CP012135.1|AUR59175.1|1823045_1825082_+|excinuclease-ABC-subunit-B
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAAQLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNPGDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLTGRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSRHLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVFVSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVRVRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAILYADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLEKLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>CP012135.1|AUR59176.1|1825334_1825826_+|protein-tyrosine-phosphatase
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDFREFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQYQAA
>CP012135.1|AUR59177.1|1826041_1826554_+|DNA-binding-protein
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADIIFAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNRSTPVAANATA
>CP012135.1|AUR59178.1|1826571_1827783_+|cysteine-desulfurase
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNLAIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQDIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRSGTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQWAAH
>CP012135.1|AUR59179.1|1827820_1828231_+|scaffolding-protein
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGKTLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>CP012135.1|AUR59180.1|1828232_1828556_+|iron-sulfur-cluster-assembly-protein
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYAREGLNEGFRFSNPNEKATCGCGESFTV
>CP012135.1|AUR59181.1|1828558_1829071_+|co-chaperone-HscB
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGVDLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLAQELSAAQPMQ
>CP012135.1|AUR59182.1|1829200_1831063_+|molecular-chaperone-HscA
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPLNTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDDAQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFDSAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRALRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLGLETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPAERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA

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Crispr_ID: CP012135_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP012135_5

3432458-3432567

Orphan

Consensus_repeat	Method
TTGACTGCCAAGACGGTATCTGTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP012135_5

>merge|CP012135|5|3432458-3432567|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCCGCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGCTTGACGGCCAAGACGGTATCTGTCCCC

>CP012135|5|5|3432458-3432567|CRISPRCasFinder
TTGACTGCCAAGACGGTATCTGTCCCC	GCAGGGAGGGTGCCTGTCCCCGCCGGGACAGGCACACTGCTGTACGCCATCGACGC
TTGACGGCCAAGACGGTATCTGTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP012135.1\|AUR60469.1\|3437305_3438007_+\|osmolarity-response-regulator	unknown	unknown	gnl\|CDD\|181883
CP012135.1\|AUR60471.1\|3440500_3441841_-\|transmembrane-cytochrome-oxidase	unknown	unknown	gnl\|CDD\|376587
CP012135.1\|AUR60474.1\|3444822_3445638_+\|cell-division-inhibitor-MinD	unknown	unknown	gnl\|CDD\|225447
CP012135.1\|AUR60467.1\|3433098_3433779_+\|membrane-protein	unknown	unknown	gnl\|CDD\|377342
CP012135.1\|AUR60465.1\|3430419_3431205_+\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|180789
CP012135.1\|AUR60462.1\|3427313_3428084_-\|methyltransferase-type-11	unknown	unknown	gnl\|CDD\|369777
CP012135.1\|AUR60457.1\|3423029_3423908_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
CP012135.1\|AUR61262.1\|3433783_3434755_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP012135.1\|AUR60466.1\|3432568_3432961_-\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|224679
CP012135.1\|AUR60463.1\|3428104_3428905_+\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
CP012135.1\|AUR60468.1\|3434850_3435753_-\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR60470.1\|3438006_3439431_+\|ATPase	unknown	unknown	gnl\|CDD\|236531
CP012135.1\|AUR60472.1\|3441956_3443720_+\|glutaminyl-tRNA-synthetase	unknown	unknown	gnl\|CDD\|235424
CP012135.1\|AUR60456.1\|3419124_3422103_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375438
CP012135.1\|AUR60461.1\|3426803_3427271_-\|ribonuclease-H	unknown	unknown	gnl\|CDD\|178927
CP012135.1\|AUR60458.1\|3423943_3424276_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235866
CP012135.1\|AUR60473.1\|3443831_3444710_+\|septum-formation-inhibitor	unknown	unknown	gnl\|CDD\|178806
CP012135.1\|AUR60464.1\|3428915_3430325_+\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|182727
CP012135.1\|AUR60460.1\|3425904_3426807_+\|integrase	unknown	unknown	gnl\|CDD\|366234
CP012135.1\|AUR60459.1\|3424254_3425775_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235866

Protein	Function_ID	Function_description	E-value
CP012135.1\|AUR60469.1\|3437305_3438007_+\|osmolarity-response-regulator	gnl\|CDD\|181883	PRK09468, ompR, osmolarity response regulator; Provisional.	4.05363e-90
CP012135.1\|AUR60471.1\|3440500_3441841_-\|transmembrane-cytochrome-oxidase	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.21087e-123
CP012135.1\|AUR60474.1\|3444822_3445638_+\|cell-division-inhibitor-MinD	gnl\|CDD\|225447	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning].	7.6448e-163
CP012135.1\|AUR60467.1\|3433098_3433779_+\|membrane-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	5.6465e-62
CP012135.1\|AUR60465.1\|3430419_3431205_+\|enoyl-ACP-reductase	gnl\|CDD\|180789	PRK06997, PRK06997, enoyl-[acyl-carrier-protein] reductase FabI.	1.22848e-177
CP012135.1\|AUR60462.1\|3427313_3428084_-\|methyltransferase-type-11	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	9.0439e-10
CP012135.1\|AUR60457.1\|3423029_3423908_+\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	2.20669e-12
CP012135.1\|AUR61262.1\|3433783_3434755_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.71001e-129
CP012135.1\|AUR60466.1\|3432568_3432961_-\|OsmC-family-protein	gnl\|CDD\|224679	COG1765, COG1765, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	4.86152e-16
CP012135.1\|AUR60463.1\|3428104_3428905_+\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	2.85848e-146
CP012135.1\|AUR60468.1\|3434850_3435753_-\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.1334e-23
CP012135.1\|AUR60470.1\|3438006_3439431_+\|ATPase	gnl\|CDD\|236531	PRK09467, envZ, osmolarity sensor protein; Provisional.	3.78414e-42
CP012135.1\|AUR60472.1\|3441956_3443720_+\|glutaminyl-tRNA-synthetase	gnl\|CDD\|235424	PRK05347, PRK05347, glutaminyl-tRNA synthetase; Provisional.	0
CP012135.1\|AUR60456.1\|3419124_3422103_+\|hypothetical-protein	gnl\|CDD\|375438	pfam17936, Big_6, Bacterial Ig domain. This domain is found in a wide variety of extracellular bacterial proteins often in multiple tandem copies.	1.32844e-07
CP012135.1\|AUR60461.1\|3426803_3427271_-\|ribonuclease-H	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	4.07937e-102
CP012135.1\|AUR60458.1\|3423943_3424276_+\|hypothetical-protein	gnl\|CDD\|235866	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase.	8.20524e-38
CP012135.1\|AUR60473.1\|3443831_3444710_+\|septum-formation-inhibitor	gnl\|CDD\|178806	PRK00030, minC, septum site-determining protein MinC.	3.47756e-166
CP012135.1\|AUR60464.1\|3428915_3430325_+\|murein-transglycosylase	gnl\|CDD\|182727	PRK10783, mltD, membrane-bound lytic murein transglycosylase D; Provisional.	5.28635e-76
CP012135.1\|AUR60460.1\|3425904_3426807_+\|integrase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	5.40336e-23
CP012135.1\|AUR60459.1\|3424254_3425775_+\|hypothetical-protein	gnl\|CDD\|235866	PRK06816, PRK06816, StlD/DarB family beta-ketosynthase.	1.80369e-130

>CP012135.1|AUR60465.1|3430419_3431205_+|enoyl-ACP-reductase
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGKRWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTMGLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAGITGEITHVDAGFSTVVPGMEN
>CP012135.1|AUR60464.1|3428915_3430325_+|murein-transglycosylase
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYASHPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDPIASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKFAVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLSSWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAAAAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>CP012135.1|AUR60463.1|3428104_3428905_+|hydroxyacylglutathione-hydrolase
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVYGPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDSLEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAAAVWSGRSLATPVEVFAALRQWKNNFK
>CP012135.1|AUR60462.1|3427313_3428084_-|methyltransferase-type-11
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQACVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQVALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRAQAASVVVNRQADDPGR
>CP012135.1|AUR60461.1|3426803_3427271_-|ribonuclease-H
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQYVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>CP012135.1|AUR60460.1|3425904_3426807_+|integrase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>CP012135.1|AUR60459.1|3424254_3425775_+|hypothetical-protein
MPGFANMIQGELSAAPLETLSVHGICAAGVGAIQAAAQGIELGAHRRALAVASELPSRLFKRSRFAAPGYDAHFLRWMLSDGAGAMLLGDASQPLAGAANGVRLRLKWIHQRSFSGDYPVCMQLGQSAGGQAHLDYGSWSEAEAAGALLLRQDILLLPHLFDIGIHEYAKLVHDGWVDPRQVSHFLCHYSSEKFIPVVEDLMDKAGLAIARERWFSNLAWRGNTGAASILIMLAEFLQTRTVQPGEQIFCYIPESGRFMAAYMLLQAEGPDETAQPARARAVPAAAPAGEADFIAPPHDPAHAPQGLEPLLGELAAIITKGSIFFRAWTLSVRLPAREALRIAWTRGAGAGWTHGPRHLAGSWELRRGALGKGAMPDHNTAQRRTPNAASRRQIHVRHRRRYRHGVRLHHRGRRLGRLRAGQSPVGRSIRACAVAGSRRRRFLALDPHPGRLPVLHRQPAHRLVLSHPGRSGSERAQPGLSARPRAGRQLPHQRHNLHARLAVKIQ
>CP012135.1|AUR60458.1|3423943_3424276_+|hypothetical-protein
MPVAFDRVYLHSAGYFMPGEPVDNDAMDQYIAPLNRISGRIKNRILAENGIRQRYYAIDPEGRTRWSNAQLAAQAIQACLARGATSTCHRSRCWPAARRAAIRSCPGSPT
>CP012135.1|AUR60457.1|3423029_3423908_+|fatty-acid-desaturase
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQGHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAAWLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPRAHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>CP012135.1|AUR60456.1|3419124_3422103_+|hypothetical-protein
MQLWLPDGTATSVRANAAGGFEASSAGDMTSGLIRARATDRYGDTSQEVTYAYTDTVDKTAPVLSIAGVATDEATGRVTVTGRSEPDAQVTIRFPGGGRKTVRADANGAYRVRSDGDLPAGVIVVQAADAAGNSTQAQQAYQDTVDRTAPEPVQIALDTDAATGRLTVSGQAEPGGSVTVTWPDGTTQTVRVDADGGFRVTSAGDAAQGDVVVVVADQAGNRAAPVRAHYADPVDRTAPMTPTVRHATDAQTGRVTVMGRTEAGALVTVQFPDGSSKTVRAQNDGGYAATSDTDMVSGPIVVSAGDADGNRTPAQQVMYTDTLDKTAPASPSLTVREDAASGRATVTGQAEPGAAVRVVFPNGEAQTVTAGSDGAYSVTSTADMVAGEITVVAADASGNQSAPARTVFADAVDKTAPAAPTLALSEAADSGRLTVSGRTEPGASVRVTFPDGETVTVTAKADGTYTATSRADMIGGNVTVVATDTAGNAAAPVRAAYADTVDRTPPVLDTPVLNVASDSGRVTVTGVTEPGARVQVAIPGESLQTVTADSAGRYRAVSPGDVLQSGTVRVIATDAHGNASAPRDVPYQDAVDRTAPPLTIEAAVEQARTGVVNVSGKTEPNLMVSATFPDGQTAQARADGQGRYQLASPADVARSGRIAVSASDAAGNRAAARAEFTDQVDKTAPAVTIRAVTEQAGTGVATVSGATEPGATVSVTFPDGQVARATADRSGAYTVHSARDVTARGNISVIATDAAGNASPSVSRQFSNTVADTVPPSLTIAMVTTDPGNGRITVSGVTEAGARVHVVFPGGASDTVTADSKGGYRATSAGDVGSGAVTAQATDASANRSPLKTYAYTDAWQPRQLSAKDFSQSRYFVPLTTRGGTDNEPLLRITTNQQIPTAELRVALKPYKTEDRAGRLVREAITLKWGNAPGVGGDARALHFYVPDSAKAKLRKELTEVERSNDYKFWIEFTDTRFGGVARLYIKVISTL
>CP012135.1|AUR60466.1|3432568_3432961_-|OsmC-family-protein
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEERKGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>CP012135.1|AUR60467.1|3433098_3433779_+|membrane-protein
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAYRAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAELARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>CP012135.1|AUR61262.1|3433783_3434755_-|ABC-transporter-substrate-binding-protein
MKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGASGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSRTLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPLLPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARFAALTARMGLRAD
>CP012135.1|AUR60468.1|3434850_3435753_-|integrase
MVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIVELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDTVEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRFTRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>CP012135.1|AUR60469.1|3437305_3438007_+|osmolarity-response-regulator
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPVILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLTGGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>CP012135.1|AUR60470.1|3438006_3439431_+|ATPase
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGNQWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFISLAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSGPHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGTDPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAVLEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>CP012135.1|AUR60471.1|3440500_3441841_-|transmembrane-cytochrome-oxidase
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGSLWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVLIDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGMGEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFWSLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGPVTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>CP012135.1|AUR60472.1|3441956_3443720_+|glutaminyl-tRNA-synthetase
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLARDYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRASRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMYSWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWDDPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSAPRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGTPGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYFTVDSKDSRPEAPVLNRIVTLRDSWQAA
>CP012135.1|AUR60473.1|3443831_3444710_+|septum-formation-inhibitor
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGVVAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESVPTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDTSARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>CP012135.1|AUR60474.1|3444822_3445638_+|cell-division-inhibitor-MinD
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQLENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGILAAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYKDVVARFLGEERSLRFTDYEKPGLLKRLFGGK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

27282 : 122073

Planktothrix_phage(25.0%)

transposase,integrase,coat,tRNA

attL 44518:44577|attR 122465:122480

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR57696.1\|27282_28185_-\|integrase	integrase	NA	NA	NA	NA
AUR57697.1\|28314_28614_-	hypothetical protein	NA	NA	NA	NA
AUR57698.1\|28674_29109_-	hypothetical protein	NA	NA	NA	NA
AUR57699.1\|29141_30359_-	thiolase	NA	NA	NA	NA
AUR57700.1\|30364_30862_-	dehydratase	NA	NA	NA	NA
AUR57701.1\|31069_32005_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR61039.1\|32214_33006_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUR57702.1\|33048_34470_+	2-methylcitrate dehydratase	NA	NA	NA	NA
AUR57703.1\|34673_35576_+\|integrase	integrase	NA	NA	NA	NA
AUR57704.1\|35572_36763_-	transporter	NA	NA	NA	NA
AUR57705.1\|37012_37924_+\|tRNA	glycyl-tRNA synthetase	NA	NA	NA	NA
AUR57706.1\|37925_40064_+\|tRNA	glycyl-tRNA synthetase subunit beta	NA	NA	NA	NA
AUR57707.1\|40060_40600_+	D,D-heptose 1,7-bisphosphate phosphatase	NA	NA	NA	NA
AUR57708.1\|40603_41332_+	acyl-phosphate glycerol 3-phosphate acyltransferase	NA	NA	NA	NA
AUR57709.1\|41318_42212_+	hypothetical protein	NA	NA	NA	NA
AUR57710.1\|42282_42678_+	glyoxalase I	NA	NA	NA	NA
AUR57711.1\|42687_43218_+	peptide deformylase	E3SLL2	Synechococcus_phage	3.7e-12	35.4
AUR57712.1\|43346_43526_-	hypothetical protein	NA	NA	NA	NA
AUR57713.1\|43711_44614_+\|integrase	integrase	NA	NA	NA	NA
44518:44577	attL	NA	NA	NA	NA
AUR61040.1\|45224_45749_+	hypothetical protein	NA	NA	NA	NA
44518:44577	attL	NA	NA	NA	NA
AUR57714.1\|45720_45957_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AUR57715.1\|46084_46978_+	membrane protein	NA	NA	NA	NA
AUR57716.1\|48147_49395_+	homoserine acetyltransferase	NA	NA	NA	NA
AUR57717.1\|49391_50006_+	methionine biosynthesis protein MetW	NA	NA	NA	NA
AUR57718.1\|50189_51092_+\|integrase	integrase	NA	NA	NA	NA
AUR57719.1\|51134_52391_+	muropeptide transporter	NA	NA	NA	NA
AUR57720.1\|53622_54357_-	glutamate racemase	NA	NA	NA	NA
AUR57721.1\|54362_54953_-	arginine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	3.2e-20	33.6
AUR57722.1\|54977_55667_-	amino acid ABC transporter permease	NA	NA	NA	NA
AUR57723.1\|55663_56425_-	glutamate ABC transporter permease	NA	NA	NA	NA
AUR57724.1\|56504_57404_-	ABC transporter	NA	NA	NA	NA
AUR57725.1\|57497_58448_-\|integrase	integrase	NA	NA	NA	NA
AUR57726.1\|59248_60475_-	serine kinase HipA	NA	NA	NA	NA
AUR57727.1\|60474_60888_-	DNA-binding protein	NA	NA	NA	NA
AUR61041.1\|61077_62019_-	hypothetical protein	NA	NA	NA	NA
AUR57728.1\|63473_64055_-	glutamine amidotransferase	NA	NA	NA	NA
AUR57729.1\|64067_64370_-	ferredoxin	NA	NA	NA	NA
AUR57730.1\|64488_65547_-	oxidoreductase	NA	NA	NA	NA
AUR57731.1\|65581_66853_-	membrane protein	NA	NA	NA	NA
AUR57732.1\|66883_67138_-	hypothetical protein	NA	NA	NA	NA
AUR57733.1\|67482_68664_-	hypothetical protein	NA	NA	NA	NA
AUR57734.1\|69085_70036_+\|integrase	integrase	NA	NA	NA	NA
AUR57735.1\|70129_70444_+\|transposase	transposase	NA	NA	NA	NA
AUR57736.1\|71636_73544_+	heat shock protein 90	A0A1B1ISV4	uncultured_Mediterranean_phage	1.1e-117	37.2
AUR57737.1\|73705_74326_-	glutathione S-transferase	NA	NA	NA	NA
AUR57738.1\|74357_74939_-	N-acetyl-anhydromuranmyl-L-alanine amidase	A0A1W6DX33	Sphingobium_phage	1.7e-05	54.3
AUR57739.1\|75027_75279_-	hypothetical protein	NA	NA	NA	NA
AUR57740.1\|75280_76123_-	membrane protein	NA	NA	NA	NA
AUR57741.1\|76228_77638_+	signal recognition particle	NA	NA	NA	NA
AUR57742.1\|77634_78585_-\|integrase	integrase	NA	NA	NA	NA
AUR61042.1\|78659_79604_+\|integrase	integrase	NA	NA	NA	NA
79508:79600	attR	NA	NA	NA	NA
AUR57743.1\|79600_81475_-	capsular biosynthesis protein	A0A2P1ELS8	Moumouvirus	2.0e-23	26.9
79508:79600	attR	NA	NA	NA	NA
AUR57744.1\|82822_83527_-	lipopolysaccharide biosynthesis protein	NA	NA	NA	NA
AUR57745.1\|83523_84630_-	glycosyl transferase	NA	NA	NA	NA
AUR57746.1\|84891_85485_-	sugar transferase	NA	NA	NA	NA
AUR57747.1\|85481_86669_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
AUR57748.1\|86731_87991_-	glycosyl transferase	NA	NA	NA	NA
AUR57749.1\|88014_89103_-	UDP-N-acetylglucosamine 2-epimerase	A0A0N9R0B2	Chrysochromulina_ericina_virus	4.8e-46	36.3
AUR57750.1\|89110_90211_-	aminotransferase DegT	A0A2K9L0G1	Tupanvirus	3.3e-31	29.7
AUR57751.1\|90214_90790_-	serine acetyltransferase	NA	NA	NA	NA
AUR57752.1\|90793_91846_-	oxidoreductase	NA	NA	NA	NA
AUR61043.1\|91976_92984_+	heptosyltransferase	NA	NA	NA	NA
AUR57753.1\|92985_94272_+	3-deoxy-D-manno-octulosonic acid transferase	NA	NA	NA	NA
AUR57754.1\|94288_94444_-	hypothetical protein	NA	NA	NA	NA
AUR57755.1\|94468_95272_-	pantothenate kinase	NA	NA	NA	NA
AUR57756.1\|95268_96135_-	biotin--protein ligase	NA	NA	NA	NA
AUR57757.1\|96209_97340_+	ABC transporter permease	NA	NA	NA	NA
AUR57758.1\|97339_98179_+	iron ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.1e-21	32.4
AUR57759.1\|98332_98800_-	hypothetical protein	NA	NA	NA	NA
AUR57760.1\|98889_99111_+	hypothetical protein	NA	NA	NA	NA
AUR57761.1\|99111_99714_+	hypothetical protein	NA	NA	NA	NA
AUR57762.1\|99743_100397_+	alpha/beta hydrolase	NA	NA	NA	NA
AUR61044.1\|100607_101786_+	cytochrome C550	B6DZZ7	Stx2-converting_phage	5.8e-66	40.5
AUR57763.1\|101866_102733_+	cytochrome C550	NA	NA	NA	NA
AUR57764.1\|102808_103084_+	hypothetical protein	NA	NA	NA	NA
AUR57765.1\|103091_103754_+	lipoate--protein ligase	NA	NA	NA	NA
AUR57766.1\|103815_104817_+	lipoyl synthase	NA	NA	NA	NA
AUR57767.1\|104831_105380_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.7e-47	53.4
AUR57768.1\|105437_106334_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
AUR57769.1\|106330_107392_-\|coat	spore coat protein	A0A1D7XFE8	Escherichia_phage	1.6e-78	44.8
AUR57770.1\|107427_108330_-\|integrase	integrase	NA	NA	NA	NA
AUR57771.1\|109277_110471_+	cystathionine beta-lyase	NA	NA	NA	NA
AUR57772.1\|110552_111182_-	thiol:disulfide interchange protein	NA	NA	NA	NA
AUR57773.1\|111243_111927_-	cell division protein	NA	NA	NA	NA
AUR57774.1\|111936_113619_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
AUR61045.1\|113906_114254_+	hypothetical protein	NA	NA	NA	NA
AUR57775.1\|114344_114662_+	hypothetical protein	NA	NA	NA	NA
AUR61046.1\|114944_115961_+\|transposase	transposase	NA	NA	NA	NA
AUR57776.1\|116036_116837_-	ABC transporter permease	NA	NA	NA	NA
AUR57777.1\|116833_117709_-	ABC transporter permease	NA	NA	NA	NA
AUR57778.1\|117719_119012_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR57779.1\|119054_120095_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.0e-22	33.7
AUR57780.1\|120200_121022_-	metallophosphatase	NA	NA	NA	NA
AUR57781.1\|121122_122073_-\|integrase	integrase	NA	NA	NA	NA
122465:122480	attR	NA	NA	NA	NA

DBSCAN-SWA_2

164893 : 301503

118

Klosneuvirus(10.53%)

integrase,tRNA

attL 173193:173211|attR 305581:305598

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR57816.1\|164893_165844_-\|integrase	integrase	NA	NA	NA	NA
AUR57817.1\|167287_168190_-	membrane protein	NA	NA	NA	NA
AUR57818.1\|168167_168797_-	LemA	NA	NA	NA	NA
AUR57819.1\|169079_170510_+	RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	5.8e-44	29.8
AUR57820.1\|170543_171173_+	threonine transporter RhtB	NA	NA	NA	NA
AUR57821.1\|171221_172829_+	peptide chain release factor 3	A0A2K9L6L3	Tupanvirus	9.3e-14	37.8
AUR57822.1\|172865_173537_+	hypothetical protein	NA	NA	NA	NA
173193:173211	attL	NA	NA	NA	NA
AUR61050.1\|173618_174095_-	bacterioferritin	NA	NA	NA	NA
173193:173211	attL	NA	NA	NA	NA
AUR57823.1\|174349_175252_+\|integrase	integrase	NA	NA	NA	NA
AUR57824.1\|176367_176895_+	lipoprotein	NA	NA	NA	NA
AUR57825.1\|176986_177802_+	lipoprotein	NA	NA	NA	NA
AUR57826.1\|177862_178597_+	hypothetical protein	NA	NA	NA	NA
AUR57827.1\|178634_180713_-\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.5e-27	23.6
AUR57828.1\|180962_181235_-	hypothetical protein	NA	NA	NA	NA
AUR57829.1\|181336_182422_+	ATP-binding protein	NA	NA	NA	NA
AUR57830.1\|182425_184330_+	surface antigen	NA	NA	NA	NA
AUR57831.1\|184326_188001_+	hypothetical protein	NA	NA	NA	NA
AUR57832.1\|188061_188625_+	deoxycytidine triphosphate deaminase	S5VM63	Pseudomonas_phage	2.6e-72	75.3
AUR57833.1\|188632_189055_-	glyoxalase	NA	NA	NA	NA
AUR57834.1\|189082_189502_-	glyoxalase	NA	NA	NA	NA
AUR57835.1\|189530_189878_-	hypothetical protein	NA	NA	NA	NA
AUR61051.1\|190151_190601_+	hypothetical protein	NA	NA	NA	NA
AUR57836.1\|190755_193026_+	lysine decarboxylase	NA	NA	NA	NA
AUR57837.1\|193101_194307_+	membrane protein	NA	NA	NA	NA
AUR57838.1\|194453_195356_+\|integrase	integrase	NA	NA	NA	NA
AUR57839.1\|195458_196094_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	2.8e-83	73.8
AUR57840.1\|196090_196984_+	divalent cation transporter	NA	NA	NA	NA
AUR57841.1\|197378_198479_+	glycine cleavage system protein T	NA	NA	NA	NA
AUR57842.1\|198560_198935_+	glycine cleavage system protein H	NA	NA	NA	NA
AUR57843.1\|198994_201859_+	glycine dehydrogenase	E3SN07	Prochlorococcus_phage	1.2e-261	51.4
AUR57844.1\|202003_202744_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR57845.1\|202813_204025_+	formyl-CoA transferase	NA	NA	NA	NA
AUR57846.1\|204053_205022_+	hypothetical protein	NA	NA	NA	NA
AUR57847.1\|205683_206586_+\|integrase	integrase	NA	NA	NA	NA
AUR57848.1\|206742_207066_+	PsiF repeat family protein	NA	NA	NA	NA
AUR61052.1\|207170_208211_-	cyclase	NA	NA	NA	NA
AUR57849.1\|208216_208996_-	3-oxoadipate enol-lactonase	NA	NA	NA	NA
AUR57850.1\|209041_209338_-	hypothetical protein	NA	NA	NA	NA
AUR57851.1\|209363_209639_-	muconolactone delta-isomerase	NA	NA	NA	NA
AUR57852.1\|209695_210340_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA
AUR57853.1\|210339_211026_-	3-oxoadipate CoA-transferase	NA	NA	NA	NA
AUR61053.1\|211224_212007_+	IclR family transcriptional regulator	NA	NA	NA	NA
AUR57854.1\|212057_212783_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR57855.1\|212814_214164_-	short-chain fatty acid transporter	NA	NA	NA	NA
AUR57856.1\|214275_215208_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AUR57857.1\|215665_218461_-	peptidase S8	NA	NA	NA	NA
AUR57858.1\|219054_221898_-	phosphoenolpyruvate carboxylase	NA	NA	NA	NA
AUR57859.1\|222068_222788_+	7-cyano-7-deazaguanine synthase	A0A0A0RPC6	Escherichia_phage	8.0e-50	43.9
AUR57860.1\|222826_223375_-	GCN5 family acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	1.2e-21	41.7
AUR57861.1\|223529_224429_+	virginiamycin B lyase	NA	NA	NA	NA
AUR57862.1\|224453_225404_-\|integrase	integrase	NA	NA	NA	NA
AUR57863.1\|225622_226318_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUR57864.1\|226334_227747_+	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
AUR57865.1\|227859_229290_+	aldehyde dehydrogenase	NA	NA	NA	NA
AUR57866.1\|229331_231245_-	thiamine biosynthesis protein ThiC	NA	NA	NA	NA
AUR57867.1\|231563_232130_+	preprotein translocase subunit SecD	NA	NA	NA	NA
AUR57868.1\|232220_233222_+	restriction endonuclease	NA	NA	NA	NA
AUR57869.1\|233336_234287_+\|integrase	integrase	NA	NA	NA	NA
AUR57870.1\|234373_235324_+\|integrase	integrase	NA	NA	NA	NA
AUR57871.1\|235320_236271_-\|integrase	integrase	NA	NA	NA	NA
AUR57872.1\|236369_237167_-	beta-D-hydroxybutyrate dehydrogenase	NA	NA	NA	NA
AUR57873.1\|238116_238527_+	4-carboxymuconolactone decarboxylase	NA	NA	NA	NA
AUR57874.1\|238776_239532_+	gamma-hydroxybutyrate dehydrogenase	D2K0C8	Staphylococcus_phage	4.6e-32	55.0
AUR57875.1\|239548_240292_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR57876.1\|240335_241379_-	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR57877.1\|241549_243652_+	membrane protein	NA	NA	NA	NA
241662:241680	attR	NA	NA	NA	NA
AUR57878.1\|245062_246019_+	hypothetical protein	NA	NA	NA	NA
241662:241680	attR	NA	NA	NA	NA
AUR57879.1\|246037_246529_-	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase	NA	NA	NA	NA
AUR57880.1\|246525_247881_-	PcnB	A0A1B1IVF3	uncultured_Mediterranean_phage	3.4e-25	36.8
AUR57881.1\|247881_248580_-	hypothetical protein	NA	NA	NA	NA
AUR57882.1\|248576_249278_-	DnaA regulatory inactivator Hda	NA	NA	NA	NA
AUR57883.1\|249530_250580_+	phosphoribosylaminoimidazole synthetase	Q58MH8	Prochlorococcus_phage	5.6e-68	43.6
AUR57884.1\|250685_251627_-\|tRNA	tRNA delta(2)-isopentenylpyrophosphate transferase	NA	NA	NA	NA
AUR57885.1\|251623_253513_-	DNA mismatch repair protein	A0A1B2LRQ5	Wolbachia_phage	3.3e-79	32.8
AUR61054.1\|253617_254238_+	membrane protein	NA	NA	NA	NA
AUR57886.1\|254380_255766_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.5e-17	30.3
AUR57887.1\|255696_256233_-	ATPase	NA	NA	NA	NA
AUR57888.1\|256384_257776_+	fumarate hydratase	NA	NA	NA	NA
AUR57889.1\|257792_258773_-	membrane protein	NA	NA	NA	NA
AUR57890.1\|258908_259892_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR57891.1\|259956_260856_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR57892.1\|260962_262717_+	gamma-glutamyltransferase	NA	NA	NA	NA
AUR57893.1\|262724_263849_-	carnitine dehydratase	NA	NA	NA	NA
AUR57894.1\|263862_264843_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR57895.1\|265573_266524_+\|integrase	integrase	NA	NA	NA	NA
AUR57896.1\|266538_266910_+	hypothetical protein	NA	NA	NA	NA
AUR57897.1\|267083_267629_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUR57898.1\|267754_269332_+	cytochrome d terminal oxidase subunit 1	NA	NA	NA	NA
AUR57899.1\|269347_270502_+	cytochrome d ubiquinol oxidase subunit 2	NA	NA	NA	NA
AUR57900.1\|270515_270641_+	cytochrome bd biosynthesis protein	NA	NA	NA	NA
AUR57901.1\|270637_272389_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.4e-09	23.8
AUR57902.1\|272385_274065_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	3.6e-16	27.6
AUR57903.1\|274127_274676_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-28	43.1
AUR57904.1\|275818_276097_+	hypothetical protein	NA	NA	NA	NA
AUR57905.1\|277140_278091_-\|integrase	integrase	NA	NA	NA	NA
AUR57906.1\|278368_278530_+	hypothetical protein	NA	NA	NA	NA
AUR57907.1\|278537_278678_+	hypothetical protein	NA	NA	NA	NA
AUR57908.1\|279196_279646_-	peptidase	NA	NA	NA	NA
AUR57909.1\|279655_280267_-	glutathione S-transferase	NA	NA	NA	NA
AUR57910.1\|280425_281274_-	cytochrome C	NA	NA	NA	NA
AUR57911.1\|281299_282682_-	cytochrome B	NA	NA	NA	NA
AUR57912.1\|282746_283388_-	ubiquinol-cytochrome C reductase	NA	NA	NA	NA
AUR57913.1\|283527_283986_+	large-conductance mechanosensitive channel	NA	NA	NA	NA
AUR57914.1\|284010_284787_-	metal-binding protein	NA	NA	NA	NA
AUR57915.1\|284807_285977_+	2-alkenal reductase	W5SAB9	Pithovirus	1.2e-07	31.2
AUR57916.1\|285973_286924_-\|integrase	integrase	NA	NA	NA	NA
AUR57917.1\|287022_287649_-	hypothetical protein	NA	NA	NA	NA
AUR57918.1\|287671_288598_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
AUR57919.1\|288606_290193_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR57920.1\|290189_291194_-	acetyl esterase	A0A2L2DMU8	Acanthamoeba_polyphaga_mimivirus	7.5e-30	31.5
AUR57921.1\|291393_292254_+	cupin	NA	NA	NA	NA
AUR57922.1\|292285_293287_-	hypothetical protein	NA	NA	NA	NA
AUR57923.1\|293357_294167_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUR57924.1\|294244_296104_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
AUR57925.1\|296232_297435_-	arabinose transporter permease	NA	NA	NA	NA
AUR57926.1\|297548_298430_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR57927.1\|299932_300493_-	5'-3'-deoxyribonucleotidase	A0A1E1EUN3	Acanthamoeba_castellanii_mimivirus	3.2e-14	30.8
AUR57928.1\|300552_301503_-\|integrase	integrase	NA	NA	NA	NA
305581:305598	attR	NA	NA	NA	NA

DBSCAN-SWA_3

365304 : 431273

Streptococcus_phage(28.57%)

integrase,tRNA

attL 429365:429381|attR 431594:431610

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR57991.1\|365304_366207_-\|integrase	integrase	NA	NA	NA	NA
AUR57992.1\|367303_367942_+	membrane protein	NA	NA	NA	NA
AUR57993.1\|367978_369322_-	glutamate dehydrogenase	NA	NA	NA	NA
AUR57994.1\|369744_370533_-	exodeoxyribonuclease III	M1PSC0	Streptococcus_phage	1.2e-19	25.7
AUR57995.1\|370670_371345_+	orotate phosphoribosyltransferase	NA	NA	NA	NA
AUR57996.1\|371458_372913_-\|tRNA	glutamyl-tRNA amidotransferase	NA	NA	NA	NA
AUR57997.1\|372915_374454_-\|tRNA	glutamyl-tRNA amidotransferase	NA	NA	NA	NA
AUR57998.1\|374456_374765_-\|tRNA	glutamyl-tRNA amidotransferase	NA	NA	NA	NA
AUR57999.1\|374995_376039_+	rod shape-determining protein MreB	NA	NA	NA	NA
AUR58000.1\|376127_377012_+	rod shape-determining protein MreC	NA	NA	NA	NA
AUR58001.1\|376998_377562_+	rod shape-determining protein MreD	NA	NA	NA	NA
AUR58002.1\|377575_379528_+	penicillin-binding protein	NA	NA	NA	NA
AUR58003.1\|379524_380661_+	ADP-ribosylglycohydrolase	NA	NA	NA	NA
AUR58004.1\|380686_381742_-	lactate dehydrogenase	NA	NA	NA	NA
AUR58005.1\|381752_383246_-	membrane protein	NA	NA	NA	NA
AUR58006.1\|383458_384034_-	dihydroorotate oxidase	NA	NA	NA	NA
AUR58007.1\|384083_384830_-	hydrolase	NA	NA	NA	NA
AUR58008.1\|384829_385732_-	acetylglutamate kinase	NA	NA	NA	NA
AUR58009.1\|385993_386782_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58010.1\|386922_387414_-	thioredoxin	NA	NA	NA	NA
AUR58011.1\|387410_388154_-	phospholipid-binding protein	NA	NA	NA	NA
AUR61059.1\|388150_388744_-	phosphoheptose isomerase	A0A067XQR2	Caulobacter_phage	5.6e-17	34.8
AUR58012.1\|388752_389052_-	hypothetical protein	NA	NA	NA	NA
AUR58013.1\|389353_390292_+	tetrapyrrole methylase	NA	NA	NA	NA
AUR58014.1\|390288_390861_+	cysteine methyltransferase	M1PFU9	Streptococcus_phage	3.2e-25	42.5
AUR58015.1\|390857_391808_-\|integrase	integrase	NA	NA	NA	NA
AUR58016.1\|391950_392862_+	reductase	NA	NA	NA	NA
AUR58017.1\|392858_393107_+	glutaredoxin	NA	NA	NA	NA
AUR58018.1\|393103_394309_+	acetyl-CoA acetyltransferase	NA	NA	NA	NA
AUR58019.1\|394381_395377_-	membrane protein	NA	NA	NA	NA
AUR58020.1\|395399_396620_-	dehydratase	NA	NA	NA	NA
AUR58021.1\|396616_397261_-	hypothetical protein	NA	NA	NA	NA
AUR58022.1\|397257_397650_-	hypothetical protein	NA	NA	NA	NA
AUR58023.1\|398991_399801_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR61060.1\|400105_401059_+	thioredoxin reductase	A0A2I2L5E1	Orpheovirus	5.6e-59	42.5
AUR58024.1\|401157_402141_+\|integrase	integrase	NA	NA	NA	NA
AUR58025.1\|402817_403588_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUR58026.1\|403584_404763_-	carnitine dehydratase	NA	NA	NA	NA
AUR58027.1\|404930_406637_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
AUR58028.1\|406633_407530_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58029.1\|407570_409160_-	sulfurtransferase	NA	NA	NA	NA
AUR58030.1\|409209_410202_-	hypothetical protein	NA	NA	NA	NA
AUR58031.1\|410270_410870_-	hypothetical protein	NA	NA	NA	NA
AUR61061.1\|411330_412269_-	hypothetical protein	NA	NA	NA	NA
AUR58032.1\|412386_413289_-\|integrase	integrase	NA	NA	NA	NA
AUR58033.1\|413425_414340_+	transporter	NA	NA	NA	NA
AUR58034.1\|414336_414996_+	membrane protein	NA	NA	NA	NA
AUR58035.1\|415085_416009_+	peptidase	A0A1C9C5K3	Heterosigma_akashiwo_virus	4.8e-07	27.2
AUR58036.1\|416014_416470_-	membrane protein	NA	NA	NA	NA
AUR58037.1\|416466_417570_-	hypothetical protein	NA	NA	NA	NA
AUR58038.1\|417757_419377_-	dolichyl-phosphate-mannose-protein mannosyltransferase	NA	NA	NA	NA
AUR58039.1\|419373_420432_-	glycosyl transferase family 2	I1TED8	Salmonella_phage	2.8e-59	40.5
AUR58040.1\|420561_421056_+	acetyltransferase	NA	NA	NA	NA
AUR58041.1\|421148_422126_+\|integrase	integrase	NA	NA	NA	NA
AUR58042.1\|422321_423527_+	ABC transporter permease	NA	NA	NA	NA
AUR58043.1\|423523_425035_+	TRAP ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR61062.1\|425050_426364_-	short-chain fatty acid transporter	NA	NA	NA	NA
AUR58044.1\|426554_426734_-	membrane protein	NA	NA	NA	NA
AUR58045.1\|427143_427878_-	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	1.4e-41	43.8
429365:429381	attL	NA	NA	NA	NA
AUR58046.1\|430322_431273_+\|integrase	integrase	NA	NA	NA	NA
AUR58046.1\|430322_431273_+\|integrase	integrase	NA	NA	NA	NA
431594:431610	attR	NA	NA	NA	NA

DBSCAN-SWA_4

620802 : 721266

110

uncultured_Caudovirales_phage(14.29%)

integrase,tRNA,tail,terminase

attL 665794:665808|attR 724081:724099

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58213.1\|620802_621753_+\|integrase	integrase	NA	NA	NA	NA
AUR58214.1\|622451_622835_+	membrane protein	NA	NA	NA	NA
AUR58215.1\|622892_623495_+	hypothetical protein	NA	NA	NA	NA
AUR61070.1\|623512_623914_-	membrane protein	NA	NA	NA	NA
AUR58216.1\|624029_624941_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58217.1\|624937_625519_+	NUDIX hydrolase	NA	NA	NA	NA
AUR61071.1\|626322_627048_+\|tRNA	arginyl-tRNA-protein transferase	NA	NA	NA	NA
AUR58218.1\|627088_628138_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
AUR58219.1\|628285_628864_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUR58220.1\|629250_630228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58221.1\|630321_634716_-	dermonecrotic toxin	NA	NA	NA	NA
AUR58222.1\|634916_635765_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR58223.1\|635923_636736_-	damage-inducible protein	NA	NA	NA	NA
AUR58224.1\|636791_637742_-\|integrase	integrase	NA	NA	NA	NA
AUR58225.1\|637840_638641_-	membrane protein	NA	NA	NA	NA
AUR58226.1\|638702_639086_+	thiol-disulfide isomerase	NA	NA	NA	NA
AUR61072.1\|639097_640450_-	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-51	34.4
AUR58227.1\|640737_641067_-	membrane protein	NA	NA	NA	NA
AUR58228.1\|641069_641819_-	membrane protein	NA	NA	NA	NA
AUR58229.1\|642001_642922_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
AUR58230.1\|642968_643181_+	hypothetical protein	NA	NA	NA	NA
AUR58231.1\|643203_643626_+	ketosteroid isomerase	NA	NA	NA	NA
AUR58232.1\|643642_644743_+	alpha/beta hydrolase	NA	NA	NA	NA
AUR58233.1\|644839_646357_-	exported peptidase	NA	NA	NA	NA
AUR58234.1\|646432_647272_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	1.1e-66	48.9
AUR61073.1\|647293_648166_-	membrane protein	NA	NA	NA	NA
AUR58235.1\|648256_649351_-	porin	NA	NA	NA	NA
AUR58236.1\|649644_650547_-\|integrase	integrase	NA	NA	NA	NA
AUR61074.1\|650669_651611_+\|integrase	integrase	NA	NA	NA	NA
AUR58237.1\|651694_652054_-	hypothetical protein	NA	NA	NA	NA
AUR58238.1\|652435_653473_-	membrane protein	NA	NA	NA	NA
AUR58239.1\|653789_655130_+	Xaa-Pro aminopeptidase	NA	NA	NA	NA
AUR58240.1\|655139_655592_-	membrane protein	NA	NA	NA	NA
AUR58241.1\|655697_656870_+	monooxygenase	NA	NA	NA	NA
AUR58242.1\|656935_657961_+\|tRNA	tRNA-dihydrouridine synthase B	NA	NA	NA	NA
AUR58243.1\|658001_658241_+	Fis family transcriptional regulator	NA	NA	NA	NA
AUR58244.1\|658310_659900_+	phosphoribosylaminoimidazolecarboxamide formyltransferase	Q58MG4	Prochlorococcus_phage	8.7e-65	47.2
AUR58245.1\|659899_660448_+	Holliday junction resolvase	NA	NA	NA	NA
AUR58246.1\|660528_661101_+	ATP-dependent DNA helicase RuvA	NA	NA	NA	NA
AUR58247.1\|661119_662031_-	NAD-dependent dehydratase	NA	NA	NA	NA
AUR58248.1\|662104_663073_-	serine dehydratase	NA	NA	NA	NA
AUR58249.1\|663195_664269_+	ATP-dependent DNA helicase RuvB	A0A127AWE7	Bacillus_phage	2.3e-08	25.7
AUR58250.1\|664273_666094_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	3.1e-74	35.3
665794:665808	attL	NA	NA	NA	NA
AUR58251.1\|666170_667121_-\|integrase	integrase	NA	NA	NA	NA
665794:665808	attL	NA	NA	NA	NA
AUR58252.1\|667209_667545_+	hypothetical protein	NA	NA	NA	NA
AUR58253.1\|667678_668329_+	carbonate dehydratase	NA	NA	NA	NA
AUR58254.1\|668350_669769_-	amidase	NA	NA	NA	NA
AUR58255.1\|669838_670594_-	hypothetical protein	NA	NA	NA	NA
AUR61075.1\|670562_671321_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUR58256.1\|671331_672213_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUR58257.1\|672229_672937_+	branched-chain amino acid ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	8.2e-07	25.4
AUR58258.1\|672939_673698_+	branched-chain amino acid ABC transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	4.4e-14	24.4
AUR58259.1\|673907_675650_+	sulfite reductase	NA	NA	NA	NA
AUR58260.1\|675642_676167_+	hypothetical protein	NA	NA	NA	NA
AUR58261.1\|676206_677001_-	dioxygenase	NA	NA	NA	NA
AUR58262.1\|677168_678242_+	hypothetical protein	NA	NA	NA	NA
AUR58263.1\|678340_679291_+\|integrase	integrase	NA	NA	NA	NA
AUR58264.1\|679542_679749_-	hypothetical protein	NA	NA	NA	NA
AUR61076.1\|679820_680432_-	repressor	NA	NA	NA	NA
AUR58265.1\|680911_681232_-	hypothetical protein	NA	NA	NA	NA
681039:681053	attR	NA	NA	NA	NA
AUR58266.1\|681224_681923_-	membrane protein	NA	NA	NA	NA
681039:681053	attR	NA	NA	NA	NA
AUR58267.1\|681937_682159_-	hypothetical protein	NA	NA	NA	NA
AUR58268.1\|682176_683127_+\|integrase	integrase	NA	NA	NA	NA
AUR58269.1\|683766_684252_+\|terminase	terminase	C7U0W1	Enterobacteria_phage	7.3e-39	61.5
AUR58270.1\|684238_685516_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.4e-150	64.7
AUR58271.1\|685518_686937_+	hypothetical protein	R9TF43	Synechococcus_phage	2.2e-99	42.1
AUR58272.1\|686908_688021_+	phage Mu F like family protein	A0A0H5BBX3	Pseudomonas_phage	2.1e-102	49.7
AUR58273.1\|688026_688269_+	hypothetical protein	A0A0H5AUE5	Pseudomonas_phage	5.6e-16	53.2
AUR58274.1\|688391_688994_+	hypothetical protein	R9TF81	Synechococcus_phage	7.9e-27	43.6
AUR58275.1\|689422_690373_-\|integrase	integrase	NA	NA	NA	NA
AUR58276.1\|691047_691299_+	hypothetical protein	NA	NA	NA	NA
AUR58277.1\|691361_691844_+	hypothetical protein	A0A2H4JE38	uncultured_Caudovirales_phage	1.8e-13	37.1
AUR58278.1\|691845_692046_+	hypothetical protein	NA	NA	NA	NA
AUR58279.1\|692045_692441_+	hypothetical protein	A0A2D2W284	Stenotrophomonas_phage	7.8e-07	35.0
AUR58280.1\|692437_692836_+	hypothetical protein	I6PCW1	Cronobacter_phage	4.2e-16	38.0
AUR58281.1\|692832_693255_+	hypothetical protein	NA	NA	NA	NA
AUR58282.1\|693262_693763_+	hypothetical protein	A0A1I9SEX5	Klebsiella_phage	4.4e-31	45.1
AUR58283.1\|694017_694536_+	hypothetical protein	A0A1S5R1H0	Pseudomonas_phage	5.4e-24	38.3
AUR58284.1\|694545_694875_+	hypothetical protein	A0A2H4J121	uncultured_Caudovirales_phage	2.9e-15	44.0
AUR58285.1\|694892_695183_+	hypothetical protein	A0A2H4JBP7	uncultured_Caudovirales_phage	3.7e-14	45.2
AUR58286.1\|695208_697821_+\|tail	tail protein	A0A2H4J107	uncultured_Caudovirales_phage	4.9e-105	38.6
AUR58287.1\|697830_698190_+	hypothetical protein	NA	NA	NA	NA
AUR58288.1\|698257_698791_+	hypothetical protein	A5A3Q9	Burkholderia_phage	1.1e-40	46.9
AUR58289.1\|698787_699177_+	hypothetical protein	A0A0G3EYJ9	Achromobacter_phage	3.0e-35	50.0
AUR58290.1\|699169_703126_+	hypothetical protein	A0A0B5A1N2	Achromobacter_phage	3.9e-215	40.8
AUR58291.1\|703130_703547_+	hypothetical protein	NA	NA	NA	NA
AUR58292.1\|703765_704029_+	hypothetical protein	A0A1B0V3F2	Roseobacter_phage	7.2e-09	41.8
AUR58293.1\|704028_704841_+	hypothetical protein	NA	NA	NA	NA
AUR58294.1\|704845_705088_+	hypothetical protein	NA	NA	NA	NA
AUR58295.1\|705066_705618_+	lysozyme	NA	NA	NA	NA
AUR58296.1\|705617_706133_+	hypothetical protein	NA	NA	NA	NA
AUR58297.1\|706129_706411_-	hypothetical protein	NA	NA	NA	NA
AUR58298.1\|706410_706632_-	hypothetical protein	NA	NA	NA	NA
AUR58299.1\|706960_707632_-	hypothetical protein	Q5QF62	Pseudomonas_virus	4.7e-36	39.9
AUR58300.1\|707559_707928_-	hypothetical protein	NA	NA	NA	NA
AUR58301.1\|707987_708674_-	transcriptional regulator	NA	NA	NA	NA
AUR58302.1\|708654_709227_-	RNA pyrophosphohydrolase	NA	NA	NA	NA
AUR58303.1\|709292_711023_+\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	4.6e-11	29.4
AUR58304.1\|711075_711504_+	acyl-CoA thioesterase	NA	NA	NA	NA
AUR58305.1\|711506_712187_+	protein tolQ	NA	NA	NA	NA
AUR58306.1\|712186_712645_+	biopolymer transporter ExbD	NA	NA	NA	NA
AUR58307.1\|712681_713656_+	energy transducer TonB	NA	NA	NA	NA
AUR58308.1\|713672_714989_+	translocation protein TolB	NA	NA	NA	NA
AUR58309.1\|715020_715518_+	membrane protein	NA	NA	NA	NA
AUR58310.1\|715604_716294_+	hypothetical protein	NA	NA	NA	NA
AUR58311.1\|716293_717343_+	iron-siderophore ABC transporter permease	NA	NA	NA	NA
AUR58312.1\|717339_718134_+	iron ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-15	30.6
AUR58313.1\|718302_718653_+	hypothetical protein	NA	NA	NA	NA
AUR58314.1\|718628_719186_+	hypothetical protein	NA	NA	NA	NA
AUR58315.1\|720315_721266_+\|integrase	integrase	NA	NA	NA	NA
724081:724099	attR	NA	NA	NA	NA

DBSCAN-SWA_5

748191 : 821353

Streptococcus_phage(16.67%)

integrase

attL 752248:752307|attR 821397:821499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58336.1\|748191_749142_-\|integrase	integrase	NA	NA	NA	NA
AUR58337.1\|749796_750894_+	carboxynorspermidine decarboxylase	NA	NA	NA	NA
AUR58338.1\|750927_752193_+	saccharopine dehydrogenase	NA	NA	NA	NA
752248:752307	attL	NA	NA	NA	NA
AUR58339.1\|752398_753301_+\|integrase	integrase	NA	NA	NA	NA
AUR58340.1\|753342_753498_+	hypothetical protein	NA	NA	NA	NA
AUR58341.1\|753544_754135_+	polyisoprenoid-binding protein	NA	NA	NA	NA
AUR61078.1\|754150_756595_-	ligand-gated channel	NA	NA	NA	NA
AUR58342.1\|756714_757686_-	membrane protein	NA	NA	NA	NA
AUR58343.1\|757817_758342_+	RNA polymerase sigma factor	NA	NA	NA	NA
AUR58344.1\|758301_759252_-\|integrase	integrase	NA	NA	NA	NA
AUR58345.1\|759473_761669_-	DNA methylase	NA	NA	NA	NA
AUR61079.1\|761741_762089_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUR58346.1\|762271_763222_+\|integrase	integrase	NA	NA	NA	NA
AUR58347.1\|763337_763760_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUR58348.1\|763843_764638_+	transcriptional regulator	NA	NA	NA	NA
AUR58349.1\|764803_765940_-	gamma-glutamyl kinase	A0A1X9I5D0	Streptococcus_phage	5.8e-63	44.8
AUR58350.1\|766010_767144_-	GTPase CgtA	NA	NA	NA	NA
AUR58351.1\|767293_767554_-	50S ribosomal protein L27	NA	NA	NA	NA
AUR58352.1\|767587_767899_-	50S ribosomal protein L21	NA	NA	NA	NA
AUR58353.1\|768323_769472_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA
AUR58354.1\|769586_770552_+	octaprenyl diphosphate synthase	NA	NA	NA	NA
AUR58355.1\|770820_771687_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58356.1\|771817_773866_+	hydantoinase	NA	NA	NA	NA
AUR58357.1\|773883_775881_+	hydantoin utilization protein B	NA	NA	NA	NA
AUR58358.1\|775915_777253_+	amino acid deaminase	NA	NA	NA	NA
AUR58359.1\|779423_780905_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
AUR58360.1\|780920_781478_-	lysine acyltransferase	NA	NA	NA	NA
AUR61080.1\|781590_781770_+	hypothetical protein	NA	NA	NA	NA
AUR58361.1\|781854_787077_+	hemolysin	NA	NA	NA	NA
AUR58362.1\|787154_789293_+	peptidase C39	W8CYL7	Bacillus_phage	2.7e-45	29.2
AUR58363.1\|789289_790612_+	hemolysin D	NA	NA	NA	NA
AUR58364.1\|790613_792038_+	CyaE	NA	NA	NA	NA
AUR58365.1\|792128_793037_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58366.1\|793101_794016_+	ABC transporter	NA	NA	NA	NA
AUR58367.1\|794422_794656_-	hypothetical protein	NA	NA	NA	NA
AUR58368.1\|794853_795537_+	amino acid ABC transporter permease	NA	NA	NA	NA
AUR58369.1\|795568_796297_+	arginine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	3.4e-32	42.4
AUR58370.1\|796326_797187_+	D-amino acid aminotransferase	NA	NA	NA	NA
AUR58371.1\|797194_797761_-	membrane protein	NA	NA	NA	NA
AUR58372.1\|797849_798806_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58373.1\|798850_799603_-	3-ketoacyl-ACP reductase	NA	NA	NA	NA
AUR58374.1\|799599_801345_-	acetolactate synthase catalytic subunit	NA	NA	NA	NA
AUR58375.1\|801429_802164_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUR58376.1\|802480_803503_+	autotransporter	NA	NA	NA	NA
AUR61081.1\|803518_804154_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR58377.1\|804385_805393_-	zinc-binding dehydrogenase	NA	NA	NA	NA
AUR58378.1\|805433_806966_-	acetyl-CoA synthetase	NA	NA	NA	NA
AUR58379.1\|806962_808081_-	deacylase	NA	NA	NA	NA
AUR58380.1\|808077_808860_-	ABC transporter permease	NA	NA	NA	NA
AUR58381.1\|808871_809735_-	ABC transporter	G3M9Y6	Bacillus_virus	9.6e-34	38.9
AUR61082.1\|809753_810851_-	hypothetical protein	NA	NA	NA	NA
AUR58382.1\|810919_811846_-	dioxygenase	NA	NA	NA	NA
AUR58383.1\|811880_813575_-	acetolactate synthase	NA	NA	NA	NA
AUR58384.1\|813774_814668_-	mechanosensitive ion channel protein	NA	NA	NA	NA
AUR58385.1\|814815_815766_-\|integrase	integrase	NA	NA	NA	NA
AUR58386.1\|815864_816521_-	hypothetical protein	NA	NA	NA	NA
AUR58387.1\|816668_819377_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	2.8e-15	24.0
AUR58388.1\|819386_820406_+	fructose 1,6-bisphosphatase	A0A1V0SKX4	Klosneuvirus	1.5e-49	35.7
AUR58389.1\|820402_821353_-\|integrase	integrase	NA	NA	NA	NA
821397:821499	attR	NA	NA	NA	NA

DBSCAN-SWA_6

859796 : 913927

Vibrio_phage(25.0%)

holin,integrase,transposase

attL 868087:868106|attR 917202:917221

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58422.1\|859796_861755_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	8.0e-28	30.3
AUR58423.1\|861837_862788_-\|integrase	integrase	NA	NA	NA	NA
AUR58424.1\|863008_863677_+	transcriptional regulator	NA	NA	NA	NA
AUR58425.1\|863800_864907_+	hemolysin secretion protein D	NA	NA	NA	NA
AUR58426.1\|864919_868033_+	acriflavine resistance protein B	S5VTK5	Leptospira_phage	4.5e-57	21.5
AUR58427.1\|868029_869523_+	RND transporter	NA	NA	NA	NA
868087:868106	attL	NA	NA	NA	NA
AUR58428.1\|869537_870209_+	transcriptional regulator	NA	NA	NA	NA
AUR61086.1\|870252_870705_-	azurin	NA	NA	NA	NA
AUR58429.1\|870887_871535_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR61087.1\|871638_873687_+	hydantoinase	NA	NA	NA	NA
AUR58430.1\|873683_875696_+	hydantoin utilization protein B	NA	NA	NA	NA
AUR58431.1\|875721_877056_+	hypothetical protein	NA	NA	NA	NA
AUR58432.1\|877164_878157_+	hypothetical protein	NA	NA	NA	NA
AUR58433.1\|878223_880308_-	hypothetical protein	NA	NA	NA	NA
AUR58434.1\|880332_881304_-	hypothetical protein	NA	NA	NA	NA
AUR58435.1\|881432_882434_-	peptidase M14	NA	NA	NA	NA
AUR58436.1\|882467_883619_-	cystathionine beta-lyase	NA	NA	NA	NA
AUR58437.1\|883822_884713_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58438.1\|884790_885615_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUR61088.1\|885811_886828_-\|transposase	transposase	NA	NA	NA	NA
AUR58439.1\|887024_888008_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58440.1\|888066_889194_-	argininosuccinate lyase	NA	NA	NA	NA
AUR58441.1\|889184_889559_-	hypothetical protein	NA	NA	NA	NA
AUR58442.1\|889606_890995_-	hypothetical protein	NA	NA	NA	NA
AUR58443.1\|891025_892015_-	hypothetical protein	NA	NA	NA	NA
AUR58444.1\|892125_893358_-	methylaspartate ammonia-lyase	NA	NA	NA	NA
AUR58445.1\|893639_894440_+	IclR family transcriptional regulator	NA	NA	NA	NA
AUR58446.1\|894462_896694_-\|holin	choline transporter	NA	NA	NA	NA
AUR58447.1\|897481_897928_-	preprotein translocase subunit SecG	NA	NA	NA	NA
AUR58448.1\|897949_898696_-	triosephosphate isomerase	NA	NA	NA	NA
AUR58449.1\|898839_899817_-	NAD(P)H-quinone oxidoreductase	NA	NA	NA	NA
AUR58450.1\|900516_901062_+	hypothetical protein	K4HZX4	Acidithiobacillus_phage	3.0e-09	30.5
AUR58451.1\|901055_902273_-	threonine dehydratase	NA	NA	NA	NA
AUR58452.1\|902413_903364_+\|integrase	integrase	NA	NA	NA	NA
AUR58453.1\|903360_904080_-	lipoprotein	NA	NA	NA	NA
AUR58454.1\|904200_906360_-	polynucleotide phosphorylase/polyadenylase	NA	NA	NA	NA
AUR58455.1\|906450_906720_-	30S ribosomal protein S15	NA	NA	NA	NA
AUR61089.1\|907013_907541_+	lipoprotein	NA	NA	NA	NA
AUR58456.1\|907559_908339_-	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AUR58457.1\|908506_909523_-	ketol-acid reductoisomerase	NA	NA	NA	NA
AUR58458.1\|909595_910087_-	acetolactate synthase	NA	NA	NA	NA
AUR58459.1\|910097_911813_-	acetolactate synthase 3 catalytic subunit	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	3.1e-60	30.3
AUR58460.1\|912283_912895_+	hypothetical protein	NA	NA	NA	NA
AUR58461.1\|912976_913927_+\|integrase	integrase	NA	NA	NA	NA
917202:917221	attR	NA	NA	NA	NA

DBSCAN-SWA_7

934674 : 978965

Bacillus_phage(11.11%)

integrase

attL 928063:928080|attR 981451:981468

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
928063:928080	attL	NA	NA	NA	NA
AUR58477.1\|934674_935625_+\|integrase	integrase	NA	NA	NA	NA
AUR58478.1\|935689_935899_+	hypothetical protein	NA	NA	NA	NA
AUR58479.1\|936058_936271_+	hypothetical protein	NA	NA	NA	NA
AUR58480.1\|936390_937509_+	N-acylglucosamine 2-epimerase	NA	NA	NA	NA
AUR58481.1\|937605_937821_+	hypothetical protein	NA	NA	NA	NA
AUR58482.1\|938014_938266_+	hypothetical protein	NA	NA	NA	NA
AUR58483.1\|938426_939329_+\|integrase	integrase	NA	NA	NA	NA
AUR58484.1\|939325_939709_-	Rieske (2Fe-2S) protein	NA	NA	NA	NA
AUR61090.1\|939763_941578_-	metal ABC transporter permease	W8CYL7	Bacillus_phage	5.7e-44	27.9
AUR61091.1\|941727_942555_+	oxidoreductase	A0A2H4PQR8	Staphylococcus_phage	1.7e-67	47.4
AUR58485.1\|942600_943581_+	alcohol dehydrogenase	NA	NA	NA	NA
AUR58486.1\|943577_943790_-	membrane protein	NA	NA	NA	NA
AUR58487.1\|943786_944968_-	membrane protein	NA	NA	NA	NA
AUR58488.1\|945131_945866_+	serine/threonine protein phosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.9e-62	49.2
AUR58489.1\|945867_948480_-	penicillin-binding protein	NA	NA	NA	NA
AUR58490.1\|948615_950529_-	peptidase	NA	NA	NA	NA
AUR58491.1\|951144_951555_-	phenylacetic acid degradation protein	NA	NA	NA	NA
AUR58492.1\|951652_952738_+	DNA polymerase IV	NA	NA	NA	NA
AUR58493.1\|952836_953787_+\|integrase	integrase	NA	NA	NA	NA
AUR58494.1\|953783_954758_-	hypothetical protein	NA	NA	NA	NA
AUR58495.1\|954903_955794_+	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	4.3e-05	27.6
AUR58496.1\|956070_956463_-	phage-like protein	A0A0R6PJ17	Moraxella_phage	4.8e-25	45.0
AUR58497.1\|956592_957543_+\|integrase	integrase	NA	NA	NA	NA
AUR58498.1\|957572_957755_-	hypothetical protein	A0A1L2JY37	Aeribacillus_phage	3.7e-12	56.1
AUR58499.1\|958527_959709_-	MFS transporter	NA	NA	NA	NA
AUR58500.1\|959924_960602_-	phosphoglycolate phosphatase	NA	NA	NA	NA
AUR58501.1\|960598_961324_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
AUR58502.1\|961539_962490_+\|integrase	integrase	NA	NA	NA	NA
AUR58503.1\|962498_963080_-	membrane protein	NA	NA	NA	NA
AUR58504.1\|963450_966132_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	3.2e-104	33.5
AUR61092.1\|966134_967265_+	3-phosphoserine/phosphohydroxythreonine aminotransferase	M1Q1P2	Streptococcus_phage	4.9e-78	44.0
AUR58505.1\|967257_968343_+	chorismate mutase	NA	NA	NA	NA
AUR58506.1\|968429_969329_+	prephenate dehydrogenase	NA	NA	NA	NA
AUR58507.1\|969325_970654_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
AUR58508.1\|970668_971340_+	cytidylate kinase	NA	NA	NA	NA
AUR58509.1\|971527_973243_+	30S ribosomal protein S1	NA	NA	NA	NA
AUR58510.1\|973244_973604_+	integration host factor subunit beta	NA	NA	NA	NA
AUR58511.1\|973795_974110_+	membrane protein	NA	NA	NA	NA
AUR58512.1\|974152_975373_+	membrane protein	NA	NA	NA	NA
AUR58513.1\|976307_977297_+	ADP-L-glycero-D-manno-heptose-6-epimerase	E3SJ87	Synechococcus_phage	2.2e-26	34.4
AUR61093.1\|977586_977916_+	hypothetical protein	NA	NA	NA	NA
AUR58514.1\|978014_978965_+\|integrase	integrase	NA	NA	NA	NA
981451:981468	attR	NA	NA	NA	NA

DBSCAN-SWA_8

998365 : 1070882

Enterococcus_phage(14.29%)

transposase,integrase,tRNA

attL 1012062:1012091|attR 1048502:1048531

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58532.1\|998365_999316_-\|integrase	integrase	NA	NA	NA	NA
AUR58533.1\|999420_1000470_+	aldo/keto reductase	NA	NA	NA	NA
AUR61095.1\|1000607_1001624_-\|transposase	transposase	NA	NA	NA	NA
AUR58534.1\|1003132_1003705_-	chorismate--pyruvate lyase	NA	NA	NA	NA
AUR58535.1\|1003764_1004496_+	pseudouridylate synthase	NA	NA	NA	NA
AUR61096.1\|1004547_1005465_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58536.1\|1006272_1009452_+	multidrug transporter	NA	NA	NA	NA
AUR58537.1\|1009448_1010831_+	multidrug transporter	NA	NA	NA	NA
AUR58538.1\|1010900_1011152_-	hypothetical protein	NA	NA	NA	NA
AUR58539.1\|1011297_1011912_-	electron transporter	NA	NA	NA	NA
1012062:1012091	attL	NA	NA	NA	NA
AUR58540.1\|1012098_1014159_-	oligopeptidase A	NA	NA	NA	NA
AUR58541.1\|1014288_1015140_-	methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.1e-33	39.8
AUR58542.1\|1015136_1015763_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AUR58543.1\|1015759_1017514_-	histidine kinase	NA	NA	NA	NA
AUR58544.1\|1017806_1020512_+	pyruvate dehydrogenase	NA	NA	NA	NA
AUR58545.1\|1020524_1022186_+	dihydrolipoamide acetyltransferase	NA	NA	NA	NA
AUR58546.1\|1022198_1023989_+	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.4e-39	25.2
AUR58547.1\|1024210_1025386_-	flagellin	NA	NA	NA	NA
AUR58548.1\|1025428_1026331_-\|integrase	integrase	NA	NA	NA	NA
AUR58549.1\|1026477_1027218_-	16S rRNA methyltransferase	NA	NA	NA	NA
AUR58550.1\|1027412_1029449_+	transketolase	NA	NA	NA	NA
AUR58551.1\|1029466_1030477_+	glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
AUR58552.1\|1030594_1031788_+	phosphoglycerate kinase	NA	NA	NA	NA
AUR58553.1\|1031817_1032591_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR58554.1\|1032587_1033778_-	acetate kinase	NA	NA	NA	NA
AUR58555.1\|1033803_1034742_-	phosphate acetyltransferase	NA	NA	NA	NA
AUR61097.1\|1034738_1037087_-	3-hydroxyalkanoate synthetase	NA	NA	NA	NA
AUR58556.1\|1037241_1037883_-	glutathione S-transferase	NA	NA	NA	NA
AUR58557.1\|1039396_1039945_-	diguanylate cyclase	NA	NA	NA	NA
AUR58558.1\|1039963_1040449_-	GNAT family acetyltransferase	NA	NA	NA	NA
AUR58559.1\|1040626_1041565_+	cytochrome C biogenesis protein	A0A0P0YMJ9	Yellowstone_lake_phycodnavirus	5.6e-11	24.1
AUR58560.1\|1041567_1041885_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUR58561.1\|1041930_1042875_+	hypothetical protein	NA	NA	NA	NA
AUR58562.1\|1044555_1045206_+	molybdenum cofactor biosynthesis protein MogA	NA	NA	NA	NA
AUR58563.1\|1045259_1045595_+	hypothetical protein	NA	NA	NA	NA
AUR61098.1\|1045609_1046452_+	peptidase	A0A292GJG6	Xanthomonas_phage	2.6e-15	36.1
AUR58564.1\|1046468_1046750_-	hypothetical protein	NA	NA	NA	NA
AUR58565.1\|1046823_1047087_-	translation initiation factor IF-1	NA	NA	NA	NA
AUR58566.1\|1047330_1048281_+\|integrase	integrase	NA	NA	NA	NA
AUR58567.1\|1048579_1049317_-	flagellar biosynthesis sigma factor	NA	NA	NA	NA
1048502:1048531	attR	NA	NA	NA	NA
AUR58568.1\|1049752_1050076_+	transcriptional regulator	NA	NA	NA	NA
AUR58569.1\|1050110_1050671_+	transcriptional regulator	NA	NA	NA	NA
AUR58570.1\|1050791_1051667_+	flagellar motor protein MotA	NA	NA	NA	NA
AUR58571.1\|1051679_1052627_+	flagellar motor protein MotB	NA	NA	NA	NA
AUR58572.1\|1052728_1053022_+	chemotaxis protein CheY	NA	NA	NA	NA
AUR58573.1\|1053048_1055106_+	chemotaxis protein CheA	NA	NA	NA	NA
AUR58574.1\|1055120_1055621_+	chemotaxis protein CheW	NA	NA	NA	NA
AUR58575.1\|1055694_1057401_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-12	41.7
AUR58576.1\|1058264_1059317_+	chemotaxis protein	NA	NA	NA	NA
AUR58577.1\|1059369_1059759_+	chemotaxis protein CheY	Q56AR1	Bacillus_thuringiensis_phage	5.7e-10	33.3
AUR58578.1\|1059767_1060400_+	chemotaxis protein CheZ	NA	NA	NA	NA
AUR61099.1\|1060499_1061516_-\|transposase	transposase	NA	NA	NA	NA
AUR61100.1\|1062346_1063354_+	aldo/keto reductase	NA	NA	NA	NA
AUR58579.1\|1063350_1064994_-	acyltransferase	NA	NA	NA	NA
AUR58580.1\|1064990_1065878_-	magnesium transporter	NA	NA	NA	NA
AUR58581.1\|1066018_1066492_-	heat-shock protein	NA	NA	NA	NA
AUR58582.1\|1066481_1067504_-	phoH-like protein	A0A0S0MVD6	Pseudomonas_phage	8.7e-50	45.4
AUR58583.1\|1067500_1068928_-\|tRNA	(dimethylallyl)adenosine tRNA methylthiotransferase	NA	NA	NA	NA
AUR61101.1\|1069865_1070882_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

1074635 : 1147704

Planktothrix_phage(16.67%)

transposase,integrase,tRNA,protease

attL 1116050:1116069|attR 1141213:1141232

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58587.1\|1074635_1075772_-\|tRNA	queuine tRNA-ribosyltransferase	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.9e-85	44.4
AUR58588.1\|1075768_1076842_-\|tRNA	S-adenosylmethionine tRNA ribosyltransferase	NA	NA	NA	NA
AUR58589.1\|1076999_1078436_+	peptidase M15	NA	NA	NA	NA
AUR61102.1\|1078526_1079168_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AUR61103.1\|1079503_1080520_+\|transposase	transposase	NA	NA	NA	NA
AUR61104.1\|1082546_1083497_+\|integrase	integrase	NA	NA	NA	NA
AUR61105.1\|1084699_1086121_-	sirohydrochlorin ferrochelatase	NA	NA	NA	NA
AUR61106.1\|1086387_1087101_+	membrane protein	NA	NA	NA	NA
AUR58590.1\|1087185_1087503_+	membrane protein	NA	NA	NA	NA
AUR58591.1\|1087543_1087957_+	membrane protein	NA	NA	NA	NA
AUR58592.1\|1087958_1088318_+	hypothetical protein	NA	NA	NA	NA
AUR58593.1\|1088360_1089905_-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	NA	NA	NA	NA
AUR58594.1\|1089988_1090819_+	lytic transglycosylase	NA	NA	NA	NA
AUR58595.1\|1090853_1092008_-	aminotransferase	NA	NA	NA	NA
AUR58596.1\|1092050_1092923_+	hypothetical protein	NA	NA	NA	NA
AUR58597.1\|1093039_1095328_+	malate dehydrogenase	NA	NA	NA	NA
AUR58598.1\|1096534_1096999_+	barstar family protein 2	NA	NA	NA	NA
AUR58599.1\|1097025_1097976_-\|integrase	integrase	NA	NA	NA	NA
AUR61107.1\|1098343_1099120_-	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-17	28.7
AUR58600.1\|1099164_1100001_-	hypothetical protein	NA	NA	NA	NA
AUR58601.1\|1100043_1101060_-	phosphate ABC transporter permease	NA	NA	NA	NA
AUR58602.1\|1101194_1102235_-	phosphate ABC transporter substrate-binding protein	M4QHS4	Cyanophage	2.1e-51	40.2
AUR58603.1\|1102429_1104511_-	polyphosphate kinase	NA	NA	NA	NA
AUR58604.1\|1104746_1106240_+	exopolyphosphatase	NA	NA	NA	NA
AUR58605.1\|1106470_1107265_-	hypothetical protein	NA	NA	NA	NA
AUR58606.1\|1107485_1108844_-	phosphoglucosamine mutase	NA	NA	NA	NA
AUR58607.1\|1108840_1109683_-	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	3.2e-26	32.5
AUR58608.1\|1109701_1111588_-	cell division protein FtsH	M4QMW8	Micromonas_pusilla_virus	1.4e-109	41.5
AUR58609.1\|1111825_1112458_-	ribosomal RNA large subunit methyltransferase E	NA	NA	NA	NA
AUR58610.1\|1112476_1113079_+	hypothetical protein	NA	NA	NA	NA
AUR58611.1\|1113524_1113926_-	hypothetical protein	NA	NA	NA	NA
AUR58612.1\|1114983_1115784_-	membrane protein	NA	NA	NA	NA
AUR58613.1\|1115827_1116814_-	serine kinase	NA	NA	NA	NA
1116050:1116069	attL	NA	NA	NA	NA
AUR58614.1\|1116989_1117967_+\|tRNA	tRNA-dihydrouridine synthase A	NA	NA	NA	NA
AUR58615.1\|1117963_1118914_-\|integrase	integrase	NA	NA	NA	NA
AUR58616.1\|1119026_1119485_-	hypothetical protein	NA	NA	NA	NA
AUR58617.1\|1119521_1120835_-	membrane protein	NA	NA	NA	NA
AUR58618.1\|1120852_1121224_+	membrane protein	NA	NA	NA	NA
AUR58619.1\|1121220_1122684_+	hypothetical protein	A0A075BSJ0	Microcystis_phage	1.7e-43	32.5
AUR58620.1\|1122824_1123553_+	chemotaxis protein CheY	NA	NA	NA	NA
AUR58621.1\|1123534_1126384_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AUR58622.1\|1126644_1127547_+\|integrase	integrase	NA	NA	NA	NA
AUR58623.1\|1127714_1128539_+	ABC transporter	A0A2R8FG22	Brazilian_cedratvirus	1.0e-08	22.7
AUR58624.1\|1128538_1129417_+	ABC transporter permease	NA	NA	NA	NA
AUR58625.1\|1129668_1129911_-	hypothetical protein	NA	NA	NA	NA
AUR58626.1\|1130321_1131437_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58627.1\|1131465_1132260_+	branched-chain amino acid ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-11	23.3
AUR58628.1\|1132256_1134122_+	long-chain fatty acid--CoA ligase	A0A1V0SBX8	Catovirus	9.3e-50	23.3
AUR58629.1\|1134200_1134833_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUR58630.1\|1134829_1135132_-	membrane protein	NA	NA	NA	NA
AUR58631.1\|1135174_1136695_-\|tRNA	lysyl-tRNA synthetase	A0A1V0SAC0	Catovirus	1.2e-82	36.0
AUR58632.1\|1136701_1137457_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR58633.1\|1137486_1138419_-	peptide chain release factor 2	NA	NA	NA	NA
AUR61108.1\|1138693_1140394_-	single-stranded DNA exonuclease	A7KV88	Bacillus_phage	1.3e-50	28.3
AUR58634.1\|1140375_1141317_-	hypothetical protein	NA	NA	NA	NA
1141213:1141232	attR	NA	NA	NA	NA
AUR61109.1\|1141410_1142643_+	cell division protein FtsX	NA	NA	NA	NA
AUR58635.1\|1142635_1143331_+	lipoprotein ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.0e-35	38.6
AUR58636.1\|1143364_1144192_+	DNAase	NA	NA	NA	NA
AUR58637.1\|1144473_1147704_+\|protease	serine protease	NA	NA	NA	NA

DBSCAN-SWA_10

1158613 : 1220784

Erysipelothrix_phage(33.33%)

integrase,tRNA

attL 1217746:1217805|attR 1220829:1220932

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58643.1\|1158613_1159516_-\|integrase	integrase	NA	NA	NA	NA
AUR58644.1\|1159662_1160286_-	fimbrial protein	NA	NA	NA	NA
AUR58645.1\|1160459_1162742_-	malic enzyme	NA	NA	NA	NA
AUR58646.1\|1162896_1165593_-	pyruvate dehydrogenase	NA	NA	NA	NA
AUR58647.1\|1165718_1166207_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUR58648.1\|1166242_1168105_+	peptide transporter	NA	NA	NA	NA
AUR58649.1\|1168083_1168293_+	membrane protein	NA	NA	NA	NA
AUR58650.1\|1168617_1171488_+	2-oxoglutarate dehydrogenase	NA	NA	NA	NA
AUR58651.1\|1171533_1172748_+	dihydrolipoamide succinyltransferase	NA	NA	NA	NA
AUR58652.1\|1172977_1174405_+	dihydrolipoamide dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	2.1e-41	28.1
AUR58653.1\|1174502_1175594_+	ATPase	NA	NA	NA	NA
AUR58654.1\|1175606_1176365_-	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUR58655.1\|1176452_1177355_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58656.1\|1177351_1178302_-\|integrase	integrase	NA	NA	NA	NA
AUR58657.1\|1178431_1179415_-	LacI family transcriptional regulator	NA	NA	NA	NA
AUR58658.1\|1179469_1180192_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR58659.1\|1181670_1183026_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AUR58660.1\|1183106_1185482_-	transcription accessory protein	NA	NA	NA	NA
AUR58661.1\|1185646_1187722_+	helicase	A0A127AW80	Bacillus_phage	2.4e-75	30.0
AUR61110.1\|1187783_1188578_-	competence protein ComL	NA	NA	NA	NA
AUR58662.1\|1188685_1189648_+	pseudouridine synthase	NA	NA	NA	NA
AUR58663.1\|1189635_1190391_+	hypothetical protein	NA	NA	NA	NA
AUR58664.1\|1190498_1192136_+	poly(3-hydroxyalkanoate) polymerase	NA	NA	NA	NA
AUR58665.1\|1192203_1192941_+	3-ketoacyl-ACP reductase	NA	NA	NA	NA
AUR58666.1\|1193043_1193619_+	polyhydroxyalkanoate synthesis repressor PhaR	NA	NA	NA	NA
AUR58667.1\|1193791_1194328_+	membrane protein	NA	NA	NA	NA
AUR61111.1\|1194360_1194675_+	periplasmic lipoprotein involved in iron transport	NA	NA	NA	NA
AUR58668.1\|1194690_1195536_+	FTR1 family iron permease	NA	NA	NA	NA
AUR58669.1\|1195574_1196954_+	membrane protein	NA	NA	NA	NA
AUR58670.1\|1197031_1197913_+	phenazine biosynthesis protein PhzC/PhzF	NA	NA	NA	NA
AUR58671.1\|1198011_1198962_+\|integrase	integrase	NA	NA	NA	NA
AUR58672.1\|1198958_1199369_-	lactoylglutathione lyase	NA	NA	NA	NA
AUR58673.1\|1199476_1200331_-	2-pyrone-4,6-dicarboxylate hydrolase	NA	NA	NA	NA
AUR58674.1\|1200323_1201286_-	lipoprotein	NA	NA	NA	NA
AUR58675.1\|1201331_1202456_-	racemase	Q6A202	Oenococcus_phage	1.5e-31	28.3
AUR58676.1\|1202561_1203440_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58677.1\|1203564_1204344_+	short-chain dehydrogenase	NA	NA	NA	NA
AUR58678.1\|1204497_1205919_+	multidrug MFS transporter	NA	NA	NA	NA
AUR58679.1\|1206353_1208051_+	sodium:proline symporter	NA	NA	NA	NA
AUR58680.1\|1208079_1208202_+	hypothetical protein	NA	NA	NA	NA
AUR61112.1\|1208277_1209219_-	peptidase S66	NA	NA	NA	NA
AUR58681.1\|1209545_1210292_+	hypothetical protein	NA	NA	NA	NA
AUR58682.1\|1210299_1211226_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58683.1\|1211347_1212265_+	oxidoreductase	NA	NA	NA	NA
AUR58684.1\|1212304_1213258_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58685.1\|1213282_1213861_+	hypothetical protein	NA	NA	NA	NA
AUR58686.1\|1215534_1216143_+	hypothetical protein	NA	NA	NA	NA
AUR58687.1\|1216220_1216574_-	hypothetical protein	NA	NA	NA	NA
AUR61113.1\|1216657_1217590_-	succinylglutamate desuccinylase	NA	NA	NA	NA
1217746:1217805	attL	NA	NA	NA	NA
AUR58688.1\|1217897_1218800_+\|integrase	integrase	NA	NA	NA	NA
AUR58689.1\|1218886_1219837_+\|integrase	integrase	NA	NA	NA	NA
AUR58690.1\|1219833_1220784_-\|integrase	integrase	NA	NA	NA	NA
1220829:1220932	attR	NA	NA	NA	NA

DBSCAN-SWA_11

1271759 : 1328922

Klosneuvirus(16.67%)

integrase

attL 1285506:1285522|attR 1333246:1333262

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58725.1\|1271759_1272662_+\|integrase	integrase	NA	NA	NA	NA
AUR58726.1\|1272847_1273117_-	hypothetical protein	NA	NA	NA	NA
AUR58727.1\|1273355_1273994_+	hypothetical protein	NA	NA	NA	NA
AUR58728.1\|1274243_1274780_+	hypothetical protein	NA	NA	NA	NA
AUR58729.1\|1274798_1276412_+	autotransporter	NA	NA	NA	NA
AUR58730.1\|1276408_1277020_-	hypothetical protein	NA	NA	NA	NA
AUR58731.1\|1277242_1278703_+	inosine-5-monophosphate dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.6e-97	41.3
AUR58732.1\|1278799_1280392_+	GMP synthase	A0A1V0SH76	Hokovirus	1.0e-17	33.3
AUR58733.1\|1280745_1281003_+	XRE family transcriptional regulator	NA	NA	NA	NA
AUR58734.1\|1281004_1282345_+	toxin HipA	NA	NA	NA	NA
AUR58735.1\|1282440_1283130_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUR58736.1\|1283142_1284573_+	MFS transporter	NA	NA	NA	NA
1285506:1285522	attL	NA	NA	NA	NA
AUR58737.1\|1286297_1287119_+	transcriptional regulator	NA	NA	NA	NA
AUR58738.1\|1287129_1288701_+	hypothetical protein	NA	NA	NA	NA
AUR58739.1\|1288729_1289707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58740.1\|1289733_1290537_+	nitrate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.7e-30	38.2
AUR58741.1\|1290533_1291328_+	ABC transporter permease	NA	NA	NA	NA
AUR58742.1\|1291335_1292571_+	hypothetical protein	NA	NA	NA	NA
AUR61117.1\|1292563_1292998_+	aconitase subunit 2	NA	NA	NA	NA
AUR58743.1\|1293747_1294698_+\|integrase	integrase	NA	NA	NA	NA
AUR58744.1\|1295319_1297047_-	transporter	NA	NA	NA	NA
AUR58745.1\|1297158_1298517_+	mRNA 3'-end processing factor	NA	NA	NA	NA
AUR58746.1\|1298809_1299760_+\|integrase	integrase	NA	NA	NA	NA
AUR58747.1\|1299800_1300871_+	membrane protein	NA	NA	NA	NA
AUR58748.1\|1300893_1301772_-	hypothetical protein	NA	NA	NA	NA
AUR58749.1\|1301943_1302915_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUR58750.1\|1303077_1303920_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58751.1\|1304081_1304762_+	anti-ECFsigma factor ChrR	NA	NA	NA	NA
AUR58752.1\|1304755_1305925_+	amine oxidase	NA	NA	NA	NA
AUR58753.1\|1305921_1306953_+	alcohol dehydrogenase	A0A2K9L339	Tupanvirus	1.8e-26	27.8
AUR58754.1\|1307020_1308238_+	MFS transporter	NA	NA	NA	NA
AUR58755.1\|1308272_1309805_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR58756.1\|1309885_1310509_+	transcriptional regulator	NA	NA	NA	NA
AUR58757.1\|1310539_1311151_+	RhtB family transporter	NA	NA	NA	NA
AUR58758.1\|1311186_1311657_+	histidine kinase	NA	NA	NA	NA
AUR58759.1\|1312088_1313093_+	peptidase M20	NA	NA	NA	NA
AUR58760.1\|1313129_1314644_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR58761.1\|1314647_1315607_+	ABC transporter	NA	NA	NA	NA
AUR58762.1\|1315584_1316439_+	peptide ABC transporter permease	NA	NA	NA	NA
AUR58763.1\|1316440_1318075_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-15	31.1
AUR58764.1\|1318158_1319220_+	LacI family transcriptional regulator	NA	NA	NA	NA
AUR58765.1\|1319691_1320216_+	DNA-binding protein	J9Q7G7	Salmonella_phage	6.5e-09	32.9
AUR58766.1\|1320679_1321582_+\|integrase	integrase	NA	NA	NA	NA
AUR58767.1\|1321578_1322613_-	hydrolase	NA	NA	NA	NA
AUR58768.1\|1322721_1323360_+	membrane protein	NA	NA	NA	NA
AUR58769.1\|1323654_1323882_+	GCN5 family acetyltransferase	NA	NA	NA	NA
AUR58770.1\|1324004_1324718_+	methyltransferase type 11	NA	NA	NA	NA
AUR58771.1\|1324962_1325913_-\|integrase	integrase	NA	NA	NA	NA
AUR58772.1\|1326052_1326298_+	hypothetical protein	NA	NA	NA	NA
AUR58773.1\|1326412_1327861_-	2-aminoadipate aminotransferase	NA	NA	NA	NA
AUR58774.1\|1327971_1328922_+\|integrase	integrase	NA	NA	NA	NA
1333246:1333262	attR	NA	NA	NA	NA

DBSCAN-SWA_12

1384416 : 1439725

Enterococcus_phage(16.67%)

integrase,protease

attL 1433616:1433632|attR 1440234:1440250

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58828.1\|1384416_1385367_+\|integrase	integrase	NA	NA	NA	NA
AUR58829.1\|1385369_1386323_+	hypothetical protein	NA	NA	NA	NA
AUR58830.1\|1386350_1387202_+	methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.1e-33	37.6
AUR58831.1\|1387207_1388236_-	lactate dehydrogenase	NA	NA	NA	NA
AUR58832.1\|1388232_1389276_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58833.1\|1389343_1390369_-	peptidase M19	NA	NA	NA	NA
AUR58834.1\|1390650_1391904_+	sarcosine oxidase subunit beta	NA	NA	NA	NA
AUR58835.1\|1391914_1392187_+	sarcosine oxidase subunit delta	NA	NA	NA	NA
AUR58836.1\|1392183_1395123_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
AUR58837.1\|1395130_1395730_+	sarcosine oxidase subunit gamma	NA	NA	NA	NA
AUR58838.1\|1395730_1396579_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AUR58839.1\|1396616_1397603_+	hypothetical protein	NA	NA	NA	NA
AUR58840.1\|1397618_1399055_+	hypothetical protein	NA	NA	NA	NA
AUR58841.1\|1399067_1399859_+	hydrolase	NA	NA	NA	NA
AUR58842.1\|1400177_1401233_+	UDP-N-acetylenolpyruvoylglucosamine reductase	NA	NA	NA	NA
AUR58843.1\|1401269_1402079_-	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
AUR58844.1\|1402079_1402628_-	membrane protein	NA	NA	NA	NA
AUR61122.1\|1402778_1403198_+	Fur family transcriptional regulator	NA	NA	NA	NA
AUR58845.1\|1403272_1404934_-	DNA repair protein	NA	NA	NA	NA
AUR58846.1\|1404949_1405849_-	inorganic polyphosphate kinase	NA	NA	NA	NA
AUR58847.1\|1405963_1406968_+	HrcA family transcriptional regulator	NA	NA	NA	NA
AUR58848.1\|1407025_1408114_+	ferrochelatase	NA	NA	NA	NA
AUR61123.1\|1408195_1408438_+	hypothetical protein	NA	NA	NA	NA
AUR58849.1\|1408579_1409134_+	molecular chaperone GrpE	NA	NA	NA	NA
AUR58850.1\|1409141_1409522_+	thioredoxin	NA	NA	NA	NA
AUR58851.1\|1409612_1411538_+	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.1e-146	50.3
AUR58852.1\|1411638_1412772_+	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	3.9e-19	60.8
AUR58853.1\|1412940_1415691_-\|protease	zinc protease	A0A2K9LA15	Tupanvirus	1.5e-19	28.1
AUR58854.1\|1416023_1416398_+	hypothetical protein	NA	NA	NA	NA
AUR58855.1\|1416435_1416978_+	acetyltransferase	NA	NA	NA	NA
AUR58856.1\|1416981_1418154_-	von Willebrand factor A	NA	NA	NA	NA
AUR61124.1\|1418175_1419063_-	ATP-binding protein	NA	NA	NA	NA
AUR58857.1\|1419155_1420106_-\|integrase	integrase	NA	NA	NA	NA
AUR58858.1\|1420272_1420626_+	cytochrome C	NA	NA	NA	NA
AUR58859.1\|1420638_1421001_+	cytochrome	NA	NA	NA	NA
AUR58860.1\|1421042_1421468_-	hypothetical protein	NA	NA	NA	NA
AUR58861.1\|1421670_1422927_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.2e-11	64.8
AUR58862.1\|1423146_1424106_+	hypothetical protein	NA	NA	NA	NA
AUR58863.1\|1424255_1425497_+	membrane protein	NA	NA	NA	NA
AUR58864.1\|1425595_1426546_+\|integrase	integrase	NA	NA	NA	NA
AUR58865.1\|1426554_1427250_-	transcriptional regulator	NA	NA	NA	NA
AUR58866.1\|1427291_1430006_-	histidine kinase	NA	NA	NA	NA
AUR58867.1\|1430071_1430671_-	potassium-transporting ATPase subunit C	NA	NA	NA	NA
AUR58868.1\|1430681_1432847_-	potassium-transporting ATPase subunit B	M1HBF8	Paramecium_bursaria_Chlorella_virus	1.2e-24	27.1
AUR58869.1\|1432870_1434655_-	ATPase	NA	NA	NA	NA
1433616:1433632	attL	NA	NA	NA	NA
AUR58870.1\|1435438_1435711_+	membrane protein	NA	NA	NA	NA
AUR58871.1\|1435710_1437777_+	sodium:solute symporter	NA	NA	NA	NA
AUR58872.1\|1437773_1438676_-\|integrase	integrase	NA	NA	NA	NA
AUR58873.1\|1438822_1439725_-\|integrase	integrase	NA	NA	NA	NA
1440234:1440250	attR	NA	NA	NA	NA

DBSCAN-SWA_13

1517038 : 1583271

Streptococcus_virus(11.11%)

integrase

attL 1522665:1522683|attR 1585560:1585578

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR58950.1\|1517038_1517941_+\|integrase	integrase	NA	NA	NA	NA
AUR58951.1\|1517947_1519060_-	hypothetical protein	NA	NA	NA	NA
AUR58952.1\|1519746_1520949_+	MFS transporter	NA	NA	NA	NA
AUR58953.1\|1521152_1523813_+	hypothetical protein	NA	NA	NA	NA
1522665:1522683	attL	NA	NA	NA	NA
AUR58954.1\|1523825_1527230_+	nuclease	NA	NA	NA	NA
AUR61127.1\|1528032_1530123_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.1e-43	38.5
AUR58955.1\|1530169_1530496_+	nucleoid-associated protein	NA	NA	NA	NA
AUR58956.1\|1530546_1531155_+	recombination protein RecR	NA	NA	NA	NA
AUR58957.1\|1531253_1532204_+\|integrase	integrase	NA	NA	NA	NA
AUR58958.1\|1532273_1533038_-	hypothetical protein	NA	NA	NA	NA
AUR61128.1\|1533034_1533571_-	hypothetical protein	NA	NA	NA	NA
AUR58959.1\|1533737_1534589_-	membrane protein	A0A1I9SA48	Rhodococcus_phage	7.0e-37	35.3
AUR58960.1\|1534648_1535275_+	translation factor Sua5	NA	NA	NA	NA
AUR58961.1\|1535271_1536174_-\|integrase	integrase	NA	NA	NA	NA
AUR58962.1\|1536320_1537433_-	Tat pathway signal protein	NA	NA	NA	NA
AUR58963.1\|1537422_1538424_-	aminopeptidase	NA	NA	NA	NA
AUR58964.1\|1538529_1540041_-	thiol oxidoreductase	NA	NA	NA	NA
AUR58965.1\|1540037_1541342_-	peptidase	NA	NA	NA	NA
AUR61129.1\|1541453_1542011_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AUR58966.1\|1542281_1542836_+	NADPH-dependent FMN reductase	A0A2P0ZL82	Lactobacillus_phage	1.7e-15	32.0
AUR58967.1\|1543291_1543507_-	hypothetical protein	NA	NA	NA	NA
AUR61130.1\|1543761_1546359_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	1.5e-21	22.6
AUR58968.1\|1546355_1547543_+	cupin	NA	NA	NA	NA
AUR58969.1\|1548201_1548816_+	fimbrial protein	NA	NA	NA	NA
AUR58970.1\|1548904_1550026_-	lipoprotein	NA	NA	NA	NA
AUR58971.1\|1550043_1550949_-	dihydrodipicolinate synthase	NA	NA	NA	NA
AUR58972.1\|1551889_1552792_+\|integrase	integrase	NA	NA	NA	NA
AUR58973.1\|1552973_1553726_+	glutamine ABC transporter substrate-bindnig protein	NA	NA	NA	NA
AUR58974.1\|1553794_1554454_+	glutamine ABC transporter permease	NA	NA	NA	NA
AUR58975.1\|1554450_1555179_+	glutamine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.3e-35	39.3
AUR58976.1\|1555191_1557471_-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A1B1IUF0	uncultured_Mediterranean_phage	5.9e-06	32.1
AUR58977.1\|1557495_1557699_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
AUR61131.1\|1557740_1558346_-	guanylate kinase	U5J9X2	Bacillus_phage	2.0e-09	29.6
AUR58978.1\|1558508_1559426_-	cytochrome C	NA	NA	NA	NA
AUR58979.1\|1559422_1560136_-	cytochrome C	NA	NA	NA	NA
AUR58980.1\|1560373_1561144_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUR58981.1\|1561148_1561748_-	NlpC/P60 family protein 2	A0A0A8WF62	Clostridium_phage	1.4e-20	41.6
AUR58982.1\|1561992_1563483_+	AMP nucleosidase	NA	NA	NA	NA
AUR58983.1\|1563541_1563826_-	DNA-binding protein	NA	NA	NA	NA
AUR58984.1\|1563822_1563951_-	hypothetical protein	NA	NA	NA	NA
AUR58985.1\|1563963_1564119_-	hypothetical protein	NA	NA	NA	NA
AUR58986.1\|1564391_1565318_-	hypothetical protein	NA	NA	NA	NA
AUR58987.1\|1565454_1566195_+	ribonuclease PH	NA	NA	NA	NA
AUR58988.1\|1566361_1567738_-	2-methylcitrate dehydratase	NA	NA	NA	NA
AUR58989.1\|1567919_1568825_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58990.1\|1570476_1572279_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AUR58991.1\|1572405_1573047_+	nucleoside-triphosphate diphosphatase	NA	NA	NA	NA
AUR58992.1\|1573145_1574096_+\|integrase	integrase	NA	NA	NA	NA
AUR58993.1\|1574117_1575338_+	coproporphyrinogen III oxidase	NA	NA	NA	NA
AUR58994.1\|1575523_1576936_+	glutamine synthetase	NA	NA	NA	NA
AUR58995.1\|1576999_1578067_+	histidine kinase	Q8QKV7	Ectocarpus_siliculosus_virus	1.1e-05	23.5
AUR58996.1\|1578066_1579554_+	chemotaxis protein CheY	NA	NA	NA	NA
AUR61132.1\|1579563_1580508_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR58997.1\|1580667_1581366_+	quercetin 2,3-dioxygenase	NA	NA	NA	NA
AUR58998.1\|1581443_1582349_+	pirin	NA	NA	NA	NA
AUR58999.1\|1582368_1583271_-\|integrase	integrase	NA	NA	NA	NA
1585560:1585578	attR	NA	NA	NA	NA

DBSCAN-SWA_14

1619268 : 1674855

Brazilian_cedratvirus(25.0%)

integrase

attL 1631753:1631770|attR 1675339:1675356

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR59023.1\|1619268_1620219_+\|integrase	integrase	NA	NA	NA	NA
AUR59024.1\|1620277_1621051_+	short-chain dehydrogenase	NA	NA	NA	NA
AUR59025.1\|1621043_1622600_+	capsular biosynthesis protein	NA	NA	NA	NA
AUR59026.1\|1622596_1623547_-\|integrase	integrase	NA	NA	NA	NA
AUR59027.1\|1624873_1625476_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUR59028.1\|1625715_1626417_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
AUR59029.1\|1626410_1627193_-	leucine/isoleucine/valine transporter ATP-binding subunit	A0A2R8FG22	Brazilian_cedratvirus	2.0e-09	25.8
AUR59030.1\|1627377_1628328_-\|integrase	integrase	NA	NA	NA	NA
AUR59031.1\|1628426_1629164_-	membrane protein	A0A0S4KZH7	Pseudomonas_phage	4.1e-41	46.6
AUR59032.1\|1629353_1630112_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR59033.1\|1630158_1631160_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59034.1\|1631325_1632294_-	phenol degradation protein meta	NA	NA	NA	NA
1631753:1631770	attL	NA	NA	NA	NA
AUR59035.1\|1633833_1634802_+	ATPase AAA	NA	NA	NA	NA
AUR59036.1\|1634810_1635752_+	MoxR protein	NA	NA	NA	NA
AUR61135.1\|1636225_1637236_+	membrane protein	NA	NA	NA	NA
AUR61136.1\|1637226_1638741_+	hypothetical protein	NA	NA	NA	NA
AUR59037.1\|1638737_1640084_+	hypothetical protein	NA	NA	NA	NA
AUR61137.1\|1640086_1641121_+	haloacid dehalogenase	NA	NA	NA	NA
AUR59038.1\|1641170_1642796_+	arylsulfatase	A0A2P0VMN7	Tetraselmis_virus	2.0e-149	52.2
AUR59039.1\|1642885_1643365_+	hypothetical protein	NA	NA	NA	NA
AUR59040.1\|1643344_1644247_-\|integrase	integrase	NA	NA	NA	NA
AUR59041.1\|1644399_1645347_+	hypothetical protein	NA	NA	NA	NA
AUR61138.1\|1645400_1647215_-	histidine kinase	NA	NA	NA	NA
AUR59042.1\|1647207_1647882_-	LuxR family transcriptional regulator	NA	NA	NA	NA
AUR59043.1\|1648011_1651086_+	autotransporter	NA	NA	NA	NA
AUR59044.1\|1651099_1651399_-	DNA-binding protein	NA	NA	NA	NA
AUR61139.1\|1651713_1652337_-	glutathione S-transferase	NA	NA	NA	NA
AUR59045.1\|1652580_1653450_+	alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase	NA	NA	NA	NA
AUR59046.1\|1653427_1654240_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR59047.1\|1654457_1655384_-	hypothetical protein	NA	NA	NA	NA
AUR59048.1\|1655496_1656276_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR59049.1\|1656266_1657463_-	lactate dehydrogenase	NA	NA	NA	NA
AUR59050.1\|1657493_1658444_-	hydrolase	NA	NA	NA	NA
AUR59051.1\|1658665_1659355_+	short-chain dehydrogenase	NA	NA	NA	NA
AUR59052.1\|1659419_1660175_+	3-oxoacyl-ACP reductase	NA	NA	NA	NA
AUR59053.1\|1660226_1661219_+	MFS transporter	NA	NA	NA	NA
AUR59054.1\|1661228_1662182_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR59055.1\|1662297_1663260_+	hypothetical protein	NA	NA	NA	NA
AUR59056.1\|1664661_1665090_+	hypothetical protein	NA	NA	NA	NA
AUR59057.1\|1665086_1666037_-\|integrase	integrase	NA	NA	NA	NA
AUR59058.1\|1666145_1666334_+	hypothetical protein	NA	NA	NA	NA
AUR61140.1\|1666330_1667053_-	NADPH-dependent FMN reductase	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-87	68.2
AUR59059.1\|1667491_1668679_-	membrane protein	NA	NA	NA	NA
AUR61141.1\|1668682_1669033_-	ArsR family transcriptional regulator	NA	NA	NA	NA
AUR59060.1\|1669266_1670679_-	hypothetical protein	NA	NA	NA	NA
AUR59061.1\|1670782_1671754_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59062.1\|1671767_1672481_+	short-chain dehydrogenase	NA	NA	NA	NA
AUR59063.1\|1672485_1673403_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR59064.1\|1673509_1673806_+	membrane protein	NA	NA	NA	NA
AUR59065.1\|1673904_1674855_+\|integrase	integrase	NA	NA	NA	NA
1675339:1675356	attR	NA	NA	NA	NA

DBSCAN-SWA_15

1863440 : 1978350

112

Klosneuvirus(20.0%)

transposase,integrase,tRNA

attL 1883644:1883662|attR 1978757:1978777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR59209.1\|1863440_1866065_+\|tRNA	alanyl-tRNA synthetase	A0A1V0SK38	Klosneuvirus	1.7e-81	39.4
AUR59210.1\|1866051_1866306_+	hypothetical protein	NA	NA	NA	NA
AUR59211.1\|1866372_1866954_-	hypothetical protein	NA	NA	NA	NA
AUR59212.1\|1867257_1867518_+	30S ribosomal protein S16	NA	NA	NA	NA
AUR59213.1\|1867683_1868307_+	16S rRNA processing protein RimM	NA	NA	NA	NA
AUR59214.1\|1868306_1869080_+\|tRNA	tRNA (guanine-N1)-methyltransferase	NA	NA	NA	NA
AUR59215.1\|1869076_1870285_-	class V aminotransferase	NA	NA	NA	NA
AUR59216.1\|1870310_1870784_-	endoribonuclease	NA	NA	NA	NA
AUR59217.1\|1870857_1871808_-\|integrase	integrase	NA	NA	NA	NA
AUR59218.1\|1871906_1872809_-\|integrase	integrase	NA	NA	NA	NA
AUR59219.1\|1872955_1874305_-	histidine kinase	NA	NA	NA	NA
AUR59220.1\|1875070_1875826_+	membrane protein	NA	NA	NA	NA
AUR59221.1\|1875918_1878801_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	3.7e-138	37.1
AUR59222.1\|1879123_1879549_+	nucleoside diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.1e-21	43.2
AUR59223.1\|1879576_1880725_+	50S rRNA methyltransferase	NA	NA	NA	NA
AUR59224.1\|1880721_1881228_+	membrane protein	NA	NA	NA	NA
AUR59225.1\|1881243_1882530_+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	NA	NA	NA	NA
AUR61153.1\|1882579_1883875_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
1883644:1883662	attL	NA	NA	NA	NA
AUR59226.1\|1883876_1884515_+	membrane protein	NA	NA	NA	NA
1883644:1883662	attL	NA	NA	NA	NA
AUR61154.1\|1884520_1885678_+	quinoprotein	NA	NA	NA	NA
AUR59227.1\|1885704_1887060_+	GTP-binding protein Der	NA	NA	NA	NA
AUR59228.1\|1887063_1888134_+	histidinol-phosphate aminotransferase	A0A1X6WGT4	Pacmanvirus	2.5e-15	25.7
AUR59229.1\|1888272_1888509_+	RNA-binding protein Hfq	NA	NA	NA	NA
AUR59230.1\|1888596_1889703_+	GTP-binding protein HflX	NA	NA	NA	NA
AUR59231.1\|1889668_1890973_+	membrane protein	NA	NA	NA	NA
AUR59232.1\|1890991_1891891_+	membrane protein	NA	NA	NA	NA
AUR59233.1\|1892074_1893232_+	ATP phosphoribosyltransferase regulatory subunit	NA	NA	NA	NA
AUR59234.1\|1893308_1894604_+	adenylosuccinate synthetase	A0A160ER07	Powai_lake_megavirus	3.0e-63	33.5
AUR59235.1\|1894717_1895257_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
AUR59236.1\|1895534_1895747_+	30S ribosomal protein S21	NA	NA	NA	NA
AUR59237.1\|1895766_1897797_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.0e-65	41.9
AUR59238.1\|1898482_1900765_+	RNA polymerase sigma factor 70	A0A2I7SAT0	Vibrio_phage	3.2e-36	30.1
AUR59239.1\|1901174_1901474_-	hypothetical protein	NA	NA	NA	NA
AUR59240.1\|1901758_1902172_+	transcriptional regulator	A0A222YXG1	Escherichia_phage	3.8e-36	59.0
AUR59241.1\|1902131_1903082_-\|integrase	integrase	NA	NA	NA	NA
AUR59242.1\|1903180_1904131_-\|integrase	integrase	NA	NA	NA	NA
AUR61155.1\|1904333_1905416_+	membrane protein	NA	NA	NA	NA
AUR59243.1\|1905431_1906193_-	sugar ABC transporter permease	NA	NA	NA	NA
AUR59244.1\|1906189_1907113_-	multidrug ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-23	33.6
AUR61156.1\|1907211_1907712_-	GCN5 family acetyltransferase	NA	NA	NA	NA
AUR59245.1\|1907744_1908488_-	permease	NA	NA	NA	NA
AUR59246.1\|1908583_1908823_-	membrane protein	NA	NA	NA	NA
AUR59247.1\|1908836_1908989_-	hypothetical protein	NA	NA	NA	NA
AUR59248.1\|1909074_1910565_-	cytochrome C oxidase	NA	NA	NA	NA
AUR59249.1\|1910656_1911595_-	cytochrome oxidase subunit III	NA	NA	NA	NA
AUR59250.1\|1911591_1911768_-	cytochrome oxidase	NA	NA	NA	NA
AUR59251.1\|1911770_1912433_-	peptidase S41	NA	NA	NA	NA
AUR61157.1\|1914054_1914198_-	membrane protein	NA	NA	NA	NA
AUR59252.1\|1914194_1915169_-	membrane protein	NA	NA	NA	NA
AUR59253.1\|1915383_1916286_+\|integrase	integrase	NA	NA	NA	NA
AUR59254.1\|1916282_1917557_-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase	A0A1V0SKB7	Klosneuvirus	9.6e-14	28.9
AUR59255.1\|1917660_1918854_+	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
AUR59256.1\|1918850_1919504_+	biotin synthase	NA	NA	NA	NA
AUR59257.1\|1919500_1920937_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
AUR59258.1\|1920924_1921284_+	murein hydrolase transporter LrgA	NA	NA	NA	NA
AUR59259.1\|1921369_1922020_+	membrane protein	NA	NA	NA	NA
AUR59260.1\|1922304_1923207_+\|integrase	integrase	NA	NA	NA	NA
AUR59261.1\|1923305_1924169_+\|integrase	integrase	NA	NA	NA	NA
AUR59262.1\|1924252_1926118_-	ATPase AAA	NA	NA	NA	NA
1924367:1924385	attR	NA	NA	NA	NA
AUR61158.1\|1926375_1927896_+	aldehyde dehydrogenase	NA	NA	NA	NA
1924367:1924385	attR	NA	NA	NA	NA
AUR59263.1\|1927983_1928634_-	NAD(P)H dehydrogenase	NA	NA	NA	NA
AUR59264.1\|1929582_1930878_+	membrane protein	NA	NA	NA	NA
AUR59265.1\|1930899_1931784_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR61159.1\|1931882_1932758_+	PhzF family phenazine biosynthesis protein	NA	NA	NA	NA
AUR59266.1\|1932747_1933104_-	RNA signal recognition particle 4.5S RNA	NA	NA	NA	NA
AUR59267.1\|1933234_1934209_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUR59268.1\|1934338_1934518_-	hypothetical protein	NA	NA	NA	NA
AUR59269.1\|1934660_1935140_+	hypothetical protein	NA	NA	NA	NA
AUR59270.1\|1935150_1935987_-	alpha/beta hydrolase	NA	NA	NA	NA
AUR59271.1\|1936099_1936471_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUR59272.1\|1936467_1937019_+	ATPase	NA	NA	NA	NA
AUR59273.1\|1937034_1938726_-	sulfate transporter	A0A2H4J153	uncultured_Caudovirales_phage	5.0e-42	27.3
AUR59274.1\|1938774_1939455_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR59275.1\|1939702_1940167_-	hypothetical protein	NA	NA	NA	NA
AUR59276.1\|1940336_1941266_+	membrane protein	NA	NA	NA	NA
AUR61160.1\|1941278_1941872_-	lipoprotein	NA	NA	NA	NA
AUR59277.1\|1941999_1943817_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.3e-37	27.4
AUR59278.1\|1943900_1944851_-\|integrase	integrase	NA	NA	NA	NA
AUR61161.1\|1944949_1945429_-	acetyltransferase	NA	NA	NA	NA
AUR59279.1\|1945551_1946454_+\|integrase	integrase	NA	NA	NA	NA
AUR59280.1\|1946472_1946820_-	aldehyde-activating protein	NA	NA	NA	NA
AUR59281.1\|1946848_1948288_-	DSBA oxidoreductase	A0A0M3UL24	Mycobacterium_phage	7.4e-55	37.4
AUR59282.1\|1948306_1948702_-	3-demethylubiquinone-9 3-methyltransferase	NA	NA	NA	NA
AUR59283.1\|1948876_1949485_+	peptidase S16	NA	NA	NA	NA
AUR59284.1\|1949497_1950316_+	hypothetical protein	A0A1B1INV8	uncultured_Mediterranean_phage	2.3e-16	28.8
AUR59285.1\|1950267_1951242_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUR59286.1\|1951270_1952317_-	lipoprotein	NA	NA	NA	NA
AUR59287.1\|1952328_1954545_-	aldehyde oxidase	NA	NA	NA	NA
AUR59288.1\|1954558_1955017_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AUR59289.1\|1955174_1955519_-	lipoprotein	NA	NA	NA	NA
AUR59290.1\|1955675_1956581_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR61162.1\|1956667_1957681_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AUR61163.1\|1959660_1960677_+\|transposase	transposase	NA	NA	NA	NA
AUR59291.1\|1960819_1962172_-	glutathione reductase	A0A2K5B2C5	Erysipelothrix_phage	2.9e-45	27.6
AUR59292.1\|1962346_1962643_+	MFS transporter	NA	NA	NA	NA
AUR59293.1\|1962789_1963794_+\|integrase	integrase	NA	NA	NA	NA
AUR59294.1\|1963828_1964731_+\|integrase	integrase	NA	NA	NA	NA
AUR59295.1\|1965364_1966003_+	hypothetical protein	NA	NA	NA	NA
AUR59296.1\|1966077_1967049_+	hypothetical protein	NA	NA	NA	NA
AUR59297.1\|1967052_1967907_+	polysaccharide deacetylase	NA	NA	NA	NA
AUR59298.1\|1967925_1968747_+	hydrolase	NA	NA	NA	NA
AUR59299.1\|1968778_1969573_+	hypothetical protein	NA	NA	NA	NA
AUR59300.1\|1969651_1970227_+	hypothetical protein	NA	NA	NA	NA
AUR61164.1\|1970223_1971018_+	oxidoreductase	NA	NA	NA	NA
AUR59301.1\|1971303_1972809_-	microcystin degradation protein MlrC	NA	NA	NA	NA
AUR59302.1\|1972850_1973633_-	exodeoxyribonuclease III	NA	NA	NA	NA
AUR59303.1\|1973702_1974149_-	membrane protein	NA	NA	NA	NA
AUR59304.1\|1974145_1975372_-	NnrS family protein	NA	NA	NA	NA
AUR59305.1\|1975364_1975769_-	preprotein translocase subunit TatC	NA	NA	NA	NA
AUR59306.1\|1975928_1976231_+	SelT/selW/selH domain protein	NA	NA	NA	NA
AUR59307.1\|1976227_1977130_-\|integrase	integrase	NA	NA	NA	NA
AUR59308.1\|1977399_1978350_-\|integrase	integrase	NA	NA	NA	NA
1978757:1978777	attR	NA	NA	NA	NA

DBSCAN-SWA_16

2149977 : 2214835

Lake_Baikal_phage(13.33%)

transposase,protease,integrase,tRNA

attL 2196830:2196849|attR 2213563:2213582

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR59437.1\|2149977_2151282_-\|protease	Clp protease ATP-binding protein	G3M9Z9	Bacillus_virus	3.2e-129	53.8
AUR59438.1\|2151386_2152040_-\|protease	Clp protease ClpP	A0A223W000	Agrobacterium_phage	6.8e-56	57.5
AUR59439.1\|2152042_2153353_-	trigger factor	NA	NA	NA	NA
AUR59440.1\|2153549_2154110_+	hypothetical protein	K4K6D8	Caulobacter_phage	1.0e-23	33.7
AUR59441.1\|2154221_2154422_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	7.4e-14	64.4
AUR59442.1\|2154767_2155334_-	hypothetical protein	NA	NA	NA	NA
AUR59443.1\|2155417_2155621_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.6e-16	62.1
AUR59444.1\|2155927_2156248_-	hypothetical protein	NA	NA	NA	NA
AUR59445.1\|2156289_2156571_-	hypothetical protein	NA	NA	NA	NA
AUR59446.1\|2156645_2157902_-	autotransporter	NA	NA	NA	NA
AUR59447.1\|2158284_2158614_+	hypothetical protein	NA	NA	NA	NA
AUR59448.1\|2160184_2161006_+	2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase	NA	NA	NA	NA
AUR59449.1\|2161005_2162145_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AUR59450.1\|2162151_2163048_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUR59451.1\|2163062_2164970_+	ABC transporter	A0A2K9L0W2	Tupanvirus	1.1e-66	31.8
AUR59452.1\|2165329_2167942_+	TonB-dependent receptor	NA	NA	NA	NA
AUR59453.1\|2167994_2170295_-	DNA helicase	A7KV33	Bacillus_phage	9.9e-110	35.9
AUR59454.1\|2170291_2171500_-	aminotransferase	NA	NA	NA	NA
AUR59455.1\|2171761_2172136_+	hypothetical protein	NA	NA	NA	NA
AUR59456.1\|2172132_2173035_-\|integrase	integrase	NA	NA	NA	NA
AUR61176.1\|2173181_2174579_-	rRNA methyltransferase	NA	NA	NA	NA
AUR59457.1\|2175235_2176201_+	riboflavin kinase	NA	NA	NA	NA
AUR59458.1\|2176190_2179052_+\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	1.0e-71	25.5
AUR59459.1\|2179054_2179561_+	peptidase A8	NA	NA	NA	NA
AUR59460.1\|2179665_2180874_+	phosphopantothenate synthase	Q9HH70	Methanothermobacter_phage	3.8e-36	30.0
AUR59461.1\|2180875_2181814_-	membrane protein	NA	NA	NA	NA
AUR59462.1\|2181975_2182449_+	AsnC family transcriptional regulator	NA	NA	NA	NA
AUR59463.1\|2182445_2183396_-\|integrase	integrase	NA	NA	NA	NA
AUR59464.1\|2183506_2183947_-	hypothetical protein	NA	NA	NA	NA
AUR59465.1\|2184075_2185305_-	lytic transglycosylase	NA	NA	NA	NA
AUR59466.1\|2185343_2186165_-	hypothetical protein	NA	NA	NA	NA
AUR59467.1\|2186218_2187370_+	hypothetical protein	NA	NA	NA	NA
AUR59468.1\|2187461_2187932_-	hypothetical protein	NA	NA	NA	NA
AUR59469.1\|2190500_2193050_+	cyanophycin synthetase	NA	NA	NA	NA
AUR59470.1\|2193120_2195694_+	cyanophycin synthetase	NA	NA	NA	NA
AUR59471.1\|2195959_2196160_+	general stress protein CsbD	NA	NA	NA	NA
AUR59472.1\|2196191_2196353_+	membrane protein	NA	NA	NA	NA
AUR59473.1\|2196410_2196749_+	phospholipid-binding protein	NA	NA	NA	NA
2196830:2196849	attL	NA	NA	NA	NA
AUR59474.1\|2196897_2197800_-\|integrase	integrase	NA	NA	NA	NA
AUR59475.1\|2198622_2199291_+	GDSL family lipase	NA	NA	NA	NA
AUR61177.1\|2199272_2201228_-	peptidylprolyl isomerase	NA	NA	NA	NA
AUR59476.1\|2201470_2202220_+	membrane protein	A0A2H4PGQ5	Escherichia_phage	1.5e-14	27.8
AUR59477.1\|2202232_2203096_+	competence protein ComJ	NA	NA	NA	NA
AUR59478.1\|2203099_2204515_-	dihydrolipoamide dehydrogenase	NA	NA	NA	NA
AUR59479.1\|2204648_2205377_-	glutathione peroxidase	A0A1D8KSL1	Synechococcus_phage	9.6e-43	56.8
AUR59480.1\|2205515_2205716_-	heavy metal transporter	NA	NA	NA	NA
AUR59481.1\|2205891_2206290_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUR59482.1\|2206313_2207714_-	23S rRNA methyltransferase	A0A2K5B251	Erysipelothrix_phage	7.3e-31	26.5
AUR59483.1\|2207832_2208585_-	hypothetical protein	NA	NA	NA	NA
AUR59484.1\|2208873_2209473_-	hypothetical protein	NA	NA	NA	NA
AUR59485.1\|2209577_2210357_-	3'-5' exonuclease	NA	NA	NA	NA
AUR59486.1\|2210353_2211238_-	peptidase	A0A292GJG6	Xanthomonas_phage	4.6e-15	49.5
AUR59487.1\|2211255_2212035_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.8e-32	46.9
AUR59488.1\|2212019_2212778_-	stationary phase survival protein SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.4e-68	51.2
AUR61178.1\|2212915_2213551_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AUR61179.1\|2213818_2214835_+\|transposase	transposase	NA	NA	NA	NA
2213563:2213582	attR	NA	NA	NA	NA

DBSCAN-SWA_17

2219785 : 2278728

Klosneuvirus(33.33%)

integrase

attL 2230455:2230514|attR 2278821:2278972

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR59493.1\|2219785_2220688_-\|integrase	integrase	NA	NA	NA	NA
AUR59494.1\|2220834_2221785_-\|integrase	integrase	NA	NA	NA	NA
AUR59495.1\|2221883_2222444_-	L-2,4-diaminobutyric acid acetyltransferase	NA	NA	NA	NA
AUR59496.1\|2222440_2222986_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUR59497.1\|2223181_2224210_+	silent information regulator protein Sir2	NA	NA	NA	NA
AUR59498.1\|2224250_2225591_+	hypothetical protein	A0A1V0SKB7	Klosneuvirus	8.8e-18	22.8
AUR59499.1\|2225699_2226704_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59500.1\|2226810_2229411_+	C4-dicarboxylate ABC transporter	NA	NA	NA	NA
AUR59501.1\|2229557_2230460_+\|integrase	integrase	NA	NA	NA	NA
2230455:2230514	attL	NA	NA	NA	NA
AUR59502.1\|2230606_2231509_+\|integrase	integrase	NA	NA	NA	NA
AUR59503.1\|2231505_2231778_-	hypothetical protein	NA	NA	NA	NA
AUR61180.1\|2232036_2234748_-	autotransporter	NA	NA	NA	NA
AUR59504.1\|2235402_2236860_+	cardiolipin synthetase	NA	NA	NA	NA
AUR59505.1\|2236856_2237207_-	anti-sigma factor antagonist	NA	NA	NA	NA
AUR59506.1\|2237350_2237779_+	serine/threonine protein kinase	NA	NA	NA	NA
AUR59507.1\|2237862_2239026_+	alanine racemase	NA	NA	NA	NA
AUR59508.1\|2239022_2241464_-	MFS transporter	NA	NA	NA	NA
AUR59509.1\|2241548_2243570_+	regulator	NA	NA	NA	NA
AUR59510.1\|2243566_2244754_+	hypothetical protein	NA	NA	NA	NA
AUR59511.1\|2246080_2246281_-	hypothetical protein	NA	NA	NA	NA
AUR61181.1\|2246317_2247016_+	hypothetical protein	NA	NA	NA	NA
AUR59512.1\|2247190_2247793_+	RNA polymerase sigma factor	NA	NA	NA	NA
AUR59513.1\|2247813_2249616_-	type III secretion protein	NA	NA	NA	NA
AUR59514.1\|2249606_2250005_-	hypothetical protein	NA	NA	NA	NA
AUR59515.1\|2250001_2251051_-	type III secretion protein	NA	NA	NA	NA
AUR59516.1\|2251047_2251848_-	type III secretion system protein	NA	NA	NA	NA
AUR61182.1\|2251859_2252126_-	type III secretion protein HrpO	NA	NA	NA	NA
AUR59517.1\|2252131_2252803_-	type III secretion system protein SsaR	NA	NA	NA	NA
AUR61183.1\|2252799_2253879_-	type III secretion system protein	NA	NA	NA	NA
AUR59518.1\|2253875_2254424_-	hypothetical protein	NA	NA	NA	NA
AUR59519.1\|2254420_2254930_-	type III secretion protein	NA	NA	NA	NA
AUR59520.1\|2254929_2256264_-	ATP synthase	NA	NA	NA	NA
AUR61184.1\|2256268_2256832_-	type III secretion system protein	NA	NA	NA	NA
AUR59521.1\|2256876_2257539_-	hypothetical protein	NA	NA	NA	NA
AUR59522.1\|2257531_2258356_-	type III secretion system protein	NA	NA	NA	NA
AUR59523.1\|2258352_2258760_-	type III secretion protein	NA	NA	NA	NA
AUR59524.1\|2258756_2259278_-	hypothetical protein	NA	NA	NA	NA
AUR59525.1\|2259282_2259744_-	hypothetical protein	NA	NA	NA	NA
AUR59526.1\|2259767_2260970_-	membrane protein	NA	NA	NA	NA
AUR59527.1\|2260999_2261941_-	membrane protein	NA	NA	NA	NA
AUR59528.1\|2261988_2262474_-	hypothetical protein	NA	NA	NA	NA
AUR59529.1\|2262489_2262765_-	hypothetical protein	NA	NA	NA	NA
AUR59530.1\|2262786_2263404_-	hypothetical protein	NA	NA	NA	NA
AUR59531.1\|2263567_2264665_+	membrane protein	NA	NA	NA	NA
AUR59532.1\|2264661_2265039_+	hypothetical protein	NA	NA	NA	NA
AUR59533.1\|2265043_2265454_+	hypothetical protein	NA	NA	NA	NA
AUR59534.1\|2265450_2265819_+	hypothetical protein	NA	NA	NA	NA
AUR61185.1\|2265815_2267915_+	Low calcium response locus protein D	NA	NA	NA	NA
AUR59535.1\|2267911_2269192_+	type III secretion protein	NA	NA	NA	NA
AUR59536.1\|2269232_2269532_+	hypothetical protein	NA	NA	NA	NA
AUR59537.1\|2269521_2269788_+	type III secretion protein	NA	NA	NA	NA
AUR59538.1\|2269823_2270279_-	hypothetical protein	NA	NA	NA	NA
AUR59539.1\|2270669_2271572_+\|integrase	integrase	NA	NA	NA	NA
AUR59540.1\|2271873_2272350_-	transcription elongation factor GreA	NA	NA	NA	NA
AUR59541.1\|2272973_2274611_+	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	8.8e-12	30.2
AUR59542.1\|2274641_2275955_-	uracil transporter	Q9KX94	Enterobacteria_phage	2.1e-149	67.1
AUR61186.1\|2276115_2276406_+	hypothetical protein	NA	NA	NA	NA
AUR59543.1\|2276506_2277829_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59544.1\|2277825_2278728_-\|integrase	integrase	NA	NA	NA	NA
2278821:2278972	attR	NA	NA	NA	NA

DBSCAN-SWA_18

2577612 : 2644064

uncultured_Caudovirales_phage(40.0%)

transposase,integrase

attL 2573740:2573758|attR 2647910:2647928

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2573740:2573758	attL	NA	NA	NA	NA
AUR59787.1\|2577612_2578515_+\|integrase	integrase	NA	NA	NA	NA
AUR59788.1\|2578530_2578743_+	hypothetical protein	NA	NA	NA	NA
AUR59789.1\|2578884_2579457_+	flagellar basal body protein FliL	NA	NA	NA	NA
AUR59790.1\|2579459_2580470_+	flagellar motor switch protein FliM	NA	NA	NA	NA
AUR59791.1\|2580462_2580963_+	flagellar motor switch protein FliN	NA	NA	NA	NA
AUR59792.1\|2580973_2581315_+	flagellar assembly protein FliO	NA	NA	NA	NA
AUR61207.1\|2581383_2582118_+	flagellar biosynthesis protein flip	NA	NA	NA	NA
AUR59793.1\|2582134_2582404_+	flagellar biosynthetic protein FliQ	NA	NA	NA	NA
AUR59794.1\|2582426_2583215_+	flagellar biosynthesis protein FliR	NA	NA	NA	NA
AUR61208.1\|2583261_2584278_-\|transposase	transposase	NA	NA	NA	NA
AUR59795.1\|2584494_2585937_-	chemotaxis protein	A0A1B0V854	Salmonella_phage	1.0e-35	41.8
AUR59796.1\|2586115_2587735_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.5e-08	45.3
AUR59797.1\|2587855_2589676_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	6.4e-11	52.6
AUR59798.1\|2589754_2591287_-	flagellar hook protein FlgL	NA	NA	NA	NA
AUR59799.1\|2591320_2592967_-	flagellar hook protein FlgK	NA	NA	NA	NA
AUR59800.1\|2593036_2594059_-	flagellar rod assembly protein FlgJ	A0A088F6W1	Sulfitobacter_phage	1.9e-12	31.4
AUR59801.1\|2594076_2595210_-	flagellar P-ring protein FlgI	NA	NA	NA	NA
AUR59802.1\|2595212_2595902_-	flagellar L-ring protein FlgH	NA	NA	NA	NA
AUR59803.1\|2595901_2596687_-	flagellar basal body rod protein FlgG	NA	NA	NA	NA
AUR59804.1\|2596730_2597495_-	flagellar basal body rod protein FlgF	NA	NA	NA	NA
AUR59805.1\|2597533_2598955_-	flagellar hook protein FlgE	NA	NA	NA	NA
AUR59806.1\|2599020_2599725_-	flagellar basal body rod modification protein	NA	NA	NA	NA
AUR59807.1\|2599772_2600192_-	flagellar basal body rod protein FlgC	NA	NA	NA	NA
AUR59808.1\|2600204_2600612_-	flagellar basal-body rod protein FlgB	NA	NA	NA	NA
AUR61209.1\|2600795_2601506_+	flagellar basal body P-ring biosynthesis protein FlgA	NA	NA	NA	NA
AUR59809.1\|2601632_2601923_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
AUR59810.1\|2601940_2602423_+	hypothetical protein	NA	NA	NA	NA
AUR59811.1\|2606928_2608083_-	flagellar biosynthesis protein FlhB	NA	NA	NA	NA
AUR61210.1\|2608388_2609405_+\|transposase	transposase	NA	NA	NA	NA
AUR59812.1\|2609651_2610440_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59813.1\|2610506_2611187_+	cysteine ABC transporter permease	NA	NA	NA	NA
AUR59814.1\|2611183_2611954_+	ATP-binding protein	G9BWD6	Planktothrix_phage	9.8e-30	39.1
AUR59815.1\|2612052_2613003_+\|integrase	integrase	NA	NA	NA	NA
AUR59816.1\|2613058_2613976_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AUR59817.1\|2613986_2615165_-	mandelate racemase	NA	NA	NA	NA
AUR59818.1\|2615184_2616180_-	hypothetical protein	NA	NA	NA	NA
AUR59819.1\|2617768_2618377_+	isopropylmalate isomerase	NA	NA	NA	NA
AUR59820.1\|2618364_2619405_+	LacI family transcriptional regulator	NA	NA	NA	NA
AUR59821.1\|2619422_2620385_-	hypothetical protein	NA	NA	NA	NA
AUR59822.1\|2620381_2621575_-	formyl-CoA transferase	NA	NA	NA	NA
AUR59823.1\|2621571_2622369_-	citrate synthase	NA	NA	NA	NA
AUR59824.1\|2622394_2623381_-	hypothetical protein	NA	NA	NA	NA
AUR59825.1\|2623399_2625439_-	acetyl-CoA synthetase	NA	NA	NA	NA
AUR61211.1\|2625640_2626321_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUR59826.1\|2626334_2627246_-	malyl-CoA thiolesterase	NA	NA	NA	NA
AUR59827.1\|2627242_2627821_-	NADPH-dependent FMN reductase	NA	NA	NA	NA
AUR59828.1\|2627959_2628865_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR59829.1\|2628872_2632292_+	nuclease	NA	NA	NA	NA
AUR59830.1\|2632279_2634880_-	autotransporter	NA	NA	NA	NA
AUR59831.1\|2635835_2636444_-	PadR family transcriptional regulator	NA	NA	NA	NA
AUR59832.1\|2636861_2637620_+	hypothetical protein	NA	NA	NA	NA
AUR59833.1\|2637616_2638819_+	cardiolipin synthase 2	NA	NA	NA	NA
AUR59834.1\|2638815_2639016_+	hypothetical protein	NA	NA	NA	NA
AUR59835.1\|2639006_2639957_-\|integrase	integrase	NA	NA	NA	NA
AUR59836.1\|2640864_2642010_+	hypothetical protein	NA	NA	NA	NA
AUR59837.1\|2641996_2642752_+	permease	NA	NA	NA	NA
AUR59838.1\|2642868_2643048_+	hypothetical protein	NA	NA	NA	NA
AUR59839.1\|2643113_2644064_-\|integrase	integrase	NA	NA	NA	NA
2647910:2647928	attR	NA	NA	NA	NA

DBSCAN-SWA_19

2672227 : 2709591

Planktothrix_phage(33.33%)

integrase

attL 2665019:2665038|attR 2711737:2711756

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2665019:2665038	attL	NA	NA	NA	NA
AUR59857.1\|2672227_2673130_+\|integrase	integrase	NA	NA	NA	NA
AUR59858.1\|2673228_2674179_+\|integrase	integrase	NA	NA	NA	NA
AUR59859.1\|2674271_2674811_+	peroxiredoxin	NA	NA	NA	NA
AUR59860.1\|2674917_2675262_-	arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	3.0e-31	58.4
AUR59861.1\|2675319_2676768_-	carnitine dehydratase	NA	NA	NA	NA
AUR61214.1\|2676955_2677282_-	hypothetical protein	NA	NA	NA	NA
AUR59862.1\|2678918_2680097_+	hypothetical protein	NA	NA	NA	NA
AUR59863.1\|2680179_2680680_+	glutathione peroxidase	Q6VZR0	Canarypox_virus	4.7e-25	38.4
AUR59864.1\|2680789_2681491_+	glutathione S-transferase	NA	NA	NA	NA
AUR59865.1\|2681502_2681967_+	GNAT family acetyltransferase	NA	NA	NA	NA
AUR59866.1\|2681981_2682257_+	biotin--protein ligase	NA	NA	NA	NA
AUR59867.1\|2682253_2683030_+	lipoate--protein ligase	NA	NA	NA	NA
AUR59868.1\|2683058_2683886_+	lipoprotein	NA	NA	NA	NA
AUR59869.1\|2684011_2684482_+	hypothetical protein	NA	NA	NA	NA
AUR59870.1\|2684608_2685502_+	phosphatidylserine decarboxylase	NA	NA	NA	NA
AUR59871.1\|2685549_2686731_+	(S)-2-hydroxy-acid oxidase	NA	NA	NA	NA
AUR59872.1\|2686743_2687559_-	iron ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59873.1\|2687692_2688220_-	hypothetical protein	NA	NA	NA	NA
AUR61215.1\|2688216_2688714_-	hypothetical protein	NA	NA	NA	NA
AUR59874.1\|2688861_2689239_+	membrane protein	NA	NA	NA	NA
AUR59875.1\|2689196_2689481_+	hypothetical protein	NA	NA	NA	NA
AUR59876.1\|2689460_2690411_-\|integrase	integrase	NA	NA	NA	NA
AUR61216.1\|2690509_2691121_-	alpha/beta hydrolase	NA	NA	NA	NA
AUR59877.1\|2691355_2692483_+	leucine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59878.1\|2692593_2693682_-	glycerol-3-phosphate transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	2.2e-19	31.2
AUR59879.1\|2693734_2694586_-	glycerol-3-phosphate transporter membrane protein	NA	NA	NA	NA
AUR59880.1\|2694605_2695487_-	glycerol-3-phosphate transporter permease	NA	NA	NA	NA
AUR61217.1\|2695663_2696977_-	glycerol-3-phosphate ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59881.1\|2697187_2698021_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
AUR59882.1\|2698017_2698599_+	membrane protein	A0A2I7SAW6	Vibrio_phage	9.4e-17	37.3
AUR59883.1\|2698952_2699903_+\|integrase	integrase	NA	NA	NA	NA
AUR59884.1\|2699918_2701034_+	leucine ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59885.1\|2701136_2702063_+	branched-chain amino acid transporter permease subunit LivH	NA	NA	NA	NA
AUR59886.1\|2702062_2703301_+	leucine/isoleucine/valine transporter permease subunit	NA	NA	NA	NA
AUR59887.1\|2703297_2704065_+	leucine/isoleucine/valine transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	1.2e-14	26.4
AUR59888.1\|2704065_2704767_+	leucine/isoleucine/valine transporter ATP-binding subunit	G9BWD6	Planktothrix_phage	1.3e-17	30.4
AUR61218.1\|2704848_2705295_-	glutamate racemase	NA	NA	NA	NA
AUR59889.1\|2706184_2706823_+	glutathione S-transferase	NA	NA	NA	NA
AUR59890.1\|2707591_2708542_+\|integrase	integrase	NA	NA	NA	NA
AUR59891.1\|2708640_2709591_+\|integrase	integrase	NA	NA	NA	NA
2711737:2711756	attR	NA	NA	NA	NA

DBSCAN-SWA_20

2808718 : 2863235

Diachasmimorpha_longicaudata_entomopoxvirus(20.0%)

transposase,integrase

attL 2830338:2830356|attR 2866798:2866816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR59973.1\|2808718_2809621_-\|integrase	integrase	NA	NA	NA	NA
AUR59974.1\|2809997_2810603_+	fimbrial protein	NA	NA	NA	NA
AUR59975.1\|2810656_2811970_-	phenylacetate--CoA ligase	NA	NA	NA	NA
AUR59976.1\|2812044_2812515_-	phenylacetic acid degradation protein	NA	NA	NA	NA
AUR59977.1\|2812514_2813303_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUR59978.1\|2813313_2814966_-	aldehyde dehydrogenase	NA	NA	NA	NA
AUR59979.1\|2815053_2816004_-\|integrase	integrase	NA	NA	NA	NA
AUR61226.1\|2817165_2817672_-	phenylacetate-CoA oxygenase	NA	NA	NA	NA
AUR59980.1\|2817668_2818433_-	phenylacetic acid degradation protein	NA	NA	NA	NA
AUR59981.1\|2818448_2818733_-	phenylacetate-CoA oxygenase	NA	NA	NA	NA
AUR59982.1\|2818797_2819787_-	phenylacetate-CoA oxygenase	NA	NA	NA	NA
AUR59983.1\|2819958_2820888_+	phenylacetic acid degradation protein	NA	NA	NA	NA
AUR59984.1\|2820859_2821546_-	NAD(P)H-hydrate epimerase	NA	NA	NA	NA
AUR59985.1\|2821579_2822125_-	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.1e-26	37.7
AUR59986.1\|2822169_2823435_+	peptidase M48	NA	NA	NA	NA
AUR59987.1\|2823431_2824334_+	GTPase RsgA	NA	NA	NA	NA
AUR59988.1\|2825515_2826460_-	peptide ABC transporter	NA	NA	NA	NA
AUR59989.1\|2826554_2828072_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR59990.1\|2828113_2829742_-	gamma-glutamyltransferase	NA	NA	NA	NA
AUR59991.1\|2829849_2830731_+	LysR family transcriptional regulator	NA	NA	NA	NA
2830338:2830356	attL	NA	NA	NA	NA
AUR59992.1\|2830991_2831219_+	hypothetical protein	NA	NA	NA	NA
AUR59993.1\|2833843_2834218_+	endonuclease	F4YXR7	Roseobacter_phage	2.1e-25	54.4
AUR59994.1\|2834242_2834581_-	hypothetical protein	NA	NA	NA	NA
AUR59995.1\|2834624_2836259_-	NAD synthetase	A0A2L0UZF5	Agrobacterium_phage	8.3e-87	36.6
AUR59996.1\|2836297_2837644_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA
AUR61227.1\|2837751_2839173_+	argininosuccinate lyase	NA	NA	NA	NA
AUR59997.1\|2839242_2839827_-	nitroreductase	NA	NA	NA	NA
AUR59998.1\|2839929_2840880_-\|integrase	integrase	NA	NA	NA	NA
AUR59999.1\|2841014_2842121_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60000.1\|2842131_2843229_+	molybdenum cofactor biosynthesis protein MoeA	NA	NA	NA	NA
AUR60001.1\|2843373_2844579_-	molybdopterin biosynthesis protein MoeA	NA	NA	NA	NA
AUR60002.1\|2844585_2845107_-	molybdopterin biosynthesis protein B	NA	NA	NA	NA
AUR61228.1\|2845103_2845586_-	molybdenum cofactor biosynthesis protein MoaE	NA	NA	NA	NA
AUR60003.1\|2845591_2845843_-	molybdopterin converting factor	NA	NA	NA	NA
AUR60004.1\|2845823_2846309_-	molybdenum cofactor biosynthesis protein C	NA	NA	NA	NA
AUR60005.1\|2846444_2849906_+	hypothetical protein	NA	NA	NA	NA
AUR60006.1\|2849923_2850808_+	carboxymethylenebutenolidase	NA	NA	NA	NA
AUR60007.1\|2850817_2851249_-	lipoprotein	NA	NA	NA	NA
AUR61229.1\|2851495_2851999_+	peroxiredoxin	M1I839	Pelagibacter_phage	1.8e-24	44.1
AUR60008.1\|2852076_2853477_+	MFS transporter	NA	NA	NA	NA
AUR60009.1\|2853551_2854427_-	membrane protein	NA	NA	NA	NA
AUR61230.1\|2854423_2855431_-	biotin synthase	NA	NA	NA	NA
AUR60010.1\|2855898_2856204_+	hypothetical protein	NA	NA	NA	NA
AUR60011.1\|2856294_2856885_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUR61231.1\|2857075_2858092_-\|transposase	transposase	NA	NA	NA	NA
AUR60012.1\|2858283_2860620_-	ATPase P	E4ZFI9	Streptococcus_phage	3.2e-124	42.8
AUR60013.1\|2860702_2861137_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUR60014.1\|2861283_2862186_+\|integrase	integrase	NA	NA	NA	NA
AUR60015.1\|2862332_2863235_+\|integrase	integrase	NA	NA	NA	NA
2866798:2866816	attR	NA	NA	NA	NA

DBSCAN-SWA_21

2871260 : 2928046

uncultured_Mediterranean_phage(28.57%)

integrase,protease

attL 2872212:2872271|attR 2928047:2928149

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60022.1\|2871260_2872163_-\|integrase	integrase	NA	NA	NA	NA
2872212:2872271	attL	NA	NA	NA	NA
AUR60023.1\|2873917_2874184_-	hypothetical protein	NA	NA	NA	NA
AUR60024.1\|2874891_2875230_+	nitrogen regulatory protein P-II 1	NA	NA	NA	NA
AUR60025.1\|2876558_2878838_-	autotransporter	NA	NA	NA	NA
AUR60026.1\|2879783_2880386_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUR60027.1\|2880482_2881772_+	MFS transporter	NA	NA	NA	NA
AUR60028.1\|2881829_2882561_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-12	31.0
AUR60029.1\|2882557_2883361_-	ABC transporter	A0A2H4PQG7	Staphylococcus_phage	7.9e-14	23.5
AUR60030.1\|2883357_2884446_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
AUR60031.1\|2884442_2885372_-	ABC transporter permease	NA	NA	NA	NA
AUR60032.1\|2885520_2886666_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60033.1\|2886687_2887590_-\|integrase	integrase	NA	NA	NA	NA
AUR60034.1\|2887968_2891790_-	transcriptional regulator	NA	NA	NA	NA
AUR60035.1\|2891946_2892615_-	lipoprotein	NA	NA	NA	NA
AUR60036.1\|2892619_2894293_-	paraquat-inducible protein B	NA	NA	NA	NA
AUR60037.1\|2894311_2895631_-	paraquat-inducible protein A	NA	NA	NA	NA
AUR60038.1\|2895635_2897951_-\|protease	Clp protease ClpX	A0A223W0B1	Agrobacterium_phage	4.1e-164	41.9
AUR61233.1\|2898006_2900175_-	penicillin-binding protein	NA	NA	NA	NA
AUR61234.1\|2900171_2904737_-	alpha-2-macroglobulin	NA	NA	NA	NA
AUR60039.1\|2905450_2905765_-\|protease	Clp protease ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.2e-10	43.8
AUR60040.1\|2905992_2906238_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-20	76.6
AUR60041.1\|2906359_2906851_+	hypothetical protein	A0A1B1IUW8	uncultured_Mediterranean_phage	4.8e-14	42.2
AUR60042.1\|2906950_2908156_-	beta-ketoadipyl CoA thiolase	NA	NA	NA	NA
AUR60043.1\|2908271_2909669_-	chloride channel protein EriC	NA	NA	NA	NA
AUR60044.1\|2909785_2910364_-	superoxide dismutase	NA	NA	NA	NA
AUR60045.1\|2910436_2911828_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	1.4e-29	32.0
AUR60046.1\|2911995_2912946_-\|integrase	integrase	NA	NA	NA	NA
AUR60047.1\|2913226_2913847_+	flagellar motor protein MotA	NA	NA	NA	NA
AUR60048.1\|2913843_2914257_+	biopolymer transporter ExbD	NA	NA	NA	NA
AUR60049.1\|2914253_2915297_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
AUR60050.1\|2915352_2915541_+	hypothetical protein	NA	NA	NA	NA
AUR60051.1\|2915550_2916315_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
AUR60052.1\|2916405_2917062_+	adenylate kinase	NA	NA	NA	NA
AUR60053.1\|2917153_2917912_+	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA
AUR60054.1\|2917937_2919539_+	membrane protein	NA	NA	NA	NA
AUR60055.1\|2919739_2920744_+	iron dicitrate transport regulator FecR	NA	NA	NA	NA
AUR60056.1\|2920844_2921108_+	30S ribosomal protein S20	NA	NA	NA	NA
AUR60057.1\|2921225_2922002_-	alpha-dehydro-beta-deoxy-D-glucarate aldolase	NA	NA	NA	NA
AUR60058.1\|2922592_2923543_+\|integrase	integrase	NA	NA	NA	NA
AUR60059.1\|2925926_2927039_-	malate dehydrogenase	NA	NA	NA	NA
AUR60060.1\|2927095_2928046_-\|integrase	integrase	NA	NA	NA	NA
2928047:2928149	attR	NA	NA	NA	NA

DBSCAN-SWA_22

2950424 : 3002122

Staphylococcus_phage(25.0%)

integrase

attL 2951289:2951348|attR 3002123:3002219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60082.1\|2950424_2951288_-\|integrase	integrase	NA	NA	NA	NA
2951289:2951348	attL	NA	NA	NA	NA
AUR60083.1\|2951483_2952956_-	magnesium transporter	NA	NA	NA	NA
AUR60084.1\|2952966_2953377_-	acyl-CoA hydrolase	NA	NA	NA	NA
AUR60085.1\|2953440_2954487_-	membrane protein	NA	NA	NA	NA
AUR60086.1\|2954593_2955472_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60087.1\|2955485_2956682_-	amidohydrolase	NA	NA	NA	NA
AUR60088.1\|2956743_2958435_+	long-chain fatty acid--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	9.4e-33	28.1
AUR60089.1\|2958431_2959334_-\|integrase	integrase	NA	NA	NA	NA
AUR60090.1\|2959502_2960399_-	inositol phosphatase	NA	NA	NA	NA
AUR60091.1\|2962676_2964902_+	glycosyl hydrolase	NA	NA	NA	NA
AUR60092.1\|2965066_2966155_+	phosphate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.7e-32	36.4
AUR60093.1\|2966111_2966765_+	DL-methionine transporter permease subunit	NA	NA	NA	NA
AUR60094.1\|2966812_2967610_+	dioxygenase	NA	NA	NA	NA
AUR60095.1\|2968189_2969092_+\|integrase	integrase	NA	NA	NA	NA
AUR60096.1\|2969172_2970321_+	alcohol dehydrogenase	NA	NA	NA	NA
AUR60097.1\|2970377_2971328_-\|integrase	integrase	NA	NA	NA	NA
AUR60098.1\|2971426_2971732_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
AUR60099.1\|2971760_2972195_-	hypothetical protein	NA	NA	NA	NA
AUR60100.1\|2972196_2973441_-	hypothetical protein	NA	NA	NA	NA
AUR60101.1\|2973437_2974148_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR61236.1\|2974162_2975074_-	hypothetical protein	NA	NA	NA	NA
AUR60102.1\|2975436_2975841_+	hypothetical protein	NA	NA	NA	NA
AUR60103.1\|2975837_2976296_+	hypothetical protein	NA	NA	NA	NA
AUR60104.1\|2976302_2977211_+	hypothetical protein	NA	NA	NA	NA
AUR61237.1\|2977207_2978074_+	ABC transporter permease	NA	NA	NA	NA
AUR60105.1\|2978060_2978888_+	sugar ABC transporter permease	NA	NA	NA	NA
AUR60106.1\|2978898_2980026_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.2e-23	32.3
AUR60107.1\|2982383_2983646_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60108.1\|2983652_2984405_+	DNA-binding protein	NA	NA	NA	NA
AUR60109.1\|2984456_2984642_-	hypothetical protein	NA	NA	NA	NA
AUR60110.1\|2984917_2985382_+	MerR family transcriptional regulator	NA	NA	NA	NA
AUR60111.1\|2985461_2986073_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA
AUR60112.1\|2986217_2988326_+	hypothetical protein	NA	NA	NA	NA
AUR60113.1\|2988322_2989273_-\|integrase	integrase	NA	NA	NA	NA
AUR60114.1\|2989376_2989997_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUR61238.1\|2990100_2990841_+	oxidoreductase	NA	NA	NA	NA
AUR60115.1\|2991975_2993100_-	hypothetical protein	NA	NA	NA	NA
AUR60116.1\|2993145_2993514_-	hypothetical protein	NA	NA	NA	NA
AUR60117.1\|2993755_2994658_-\|integrase	integrase	NA	NA	NA	NA
AUR60118.1\|2995741_2996284_-	hypothetical protein	NA	NA	NA	NA
AUR60119.1\|2996717_2997620_+\|integrase	integrase	NA	NA	NA	NA
AUR60120.1\|2997616_2998525_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60121.1\|2998651_2999488_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0P0BXC9	Ostreococcus_lucimarinus_virus	1.6e-33	33.3
AUR60122.1\|3000000_3001110_+	porin	NA	NA	NA	NA
AUR60123.1\|3001171_3002122_-\|integrase	integrase	NA	NA	NA	NA
3002123:3002219	attR	NA	NA	NA	NA

DBSCAN-SWA_23

3382108 : 3435753

Staphylococcus_phage(33.33%)

transposase,integrase

attL 3411136:3411165|attR 3448771:3448800

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60424.1\|3382108_3383011_+\|integrase	integrase	NA	NA	NA	NA
AUR60425.1\|3383415_3384060_-	urease accessory protein UreG	NA	NA	NA	NA
AUR60426.1\|3384084_3384669_-	Urease accessory protein UreF	NA	NA	NA	NA
AUR60427.1\|3384769_3385387_-	urease accessory protein UreE	NA	NA	NA	NA
AUR60428.1\|3385389_3387105_-	urease subunit alpha	NA	NA	NA	NA
AUR60429.1\|3387101_3387410_-	urease subunit beta	NA	NA	NA	NA
AUR61260.1\|3387426_3388044_-	urease accessory protein UreJ	NA	NA	NA	NA
AUR60430.1\|3388088_3388391_-	urease subunit gamma	NA	NA	NA	NA
AUR60431.1\|3388491_3389346_-	urease accessory protein ureD	NA	NA	NA	NA
AUR60432.1\|3390617_3391025_-	aldehyde-activating protein	NA	NA	NA	NA
AUR60433.1\|3391394_3392189_-	GntR family transcriptional regulator	NA	NA	NA	NA
AUR60434.1\|3392289_3393525_+	methylaspartate ammonia-lyase	NA	NA	NA	NA
AUR60435.1\|3393593_3394610_+	LacI family transcriptional regulator	NA	NA	NA	NA
AUR60436.1\|3394621_3395998_+	hypothetical protein	NA	NA	NA	NA
AUR60437.1\|3395994_3397191_+	membrane protein	NA	NA	NA	NA
AUR60438.1\|3397187_3398726_-	SpoVR family protein	NA	NA	NA	NA
AUR60439.1\|3398722_3399982_-	hypothetical protein	NA	NA	NA	NA
AUR60440.1\|3401922_3402825_-\|integrase	integrase	NA	NA	NA	NA
AUR60441.1\|3403639_3404734_-	hypothetical protein	NA	NA	NA	NA
AUR60442.1\|3404726_3406061_-	CoA ligase	NA	NA	NA	NA
AUR60443.1\|3406014_3406698_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUR60444.1\|3406723_3407887_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUR60445.1\|3407883_3408885_-	ABC transporter permease	NA	NA	NA	NA
AUR60446.1\|3408884_3409757_-	ABC transporter permease	NA	NA	NA	NA
AUR60447.1\|3409753_3410503_-	branched-chain amino acid ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.9e-09	27.8
AUR60448.1\|3410499_3411291_-	ABC transporter ATP-binding protein	A0A1M7XV31	Cedratvirus	1.7e-08	29.4
3411136:3411165	attL	NA	NA	NA	NA
AUR60449.1\|3411287_3412427_-	ABC transporter	NA	NA	NA	NA
AUR60450.1\|3412702_3413488_+	3-hydroxy-2-methylbutyryl-CoA dehydrogenase	NA	NA	NA	NA
AUR60451.1\|3413521_3414304_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60452.1\|3414307_3414697_+	DNA-binding protein	NA	NA	NA	NA
AUR60453.1\|3415836_3416700_+	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
AUR60454.1\|3416735_3417824_+	hypothetical protein	NA	NA	NA	NA
AUR60455.1\|3417820_3418723_-\|integrase	integrase	NA	NA	NA	NA
AUR60456.1\|3419124_3422103_+	hypothetical protein	NA	NA	NA	NA
AUR60457.1\|3423029_3423908_+	fatty acid desaturase	NA	NA	NA	NA
AUR60458.1\|3423943_3424276_+	hypothetical protein	NA	NA	NA	NA
AUR60459.1\|3424254_3425775_+	hypothetical protein	NA	NA	NA	NA
AUR60460.1\|3425904_3426807_+\|integrase	integrase	NA	NA	NA	NA
AUR60461.1\|3426803_3427271_-	ribonuclease H	J9Q745	Salmonella_phage	5.6e-36	50.7
AUR60462.1\|3427313_3428084_-	methyltransferase type 11	NA	NA	NA	NA
AUR60463.1\|3428104_3428905_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AUR60464.1\|3428915_3430325_+	murein transglycosylase	NA	NA	NA	NA
AUR60465.1\|3430419_3431205_+	enoyl-ACP reductase	NA	NA	NA	NA
AUR61261.1\|3431444_3432461_+\|transposase	transposase	NA	NA	NA	NA
AUR60466.1\|3432568_3432961_-	OsmC family protein	NA	NA	NA	NA
AUR60467.1\|3433098_3433779_+	membrane protein	NA	NA	NA	NA
AUR61262.1\|3433783_3434755_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60468.1\|3434850_3435753_-\|integrase	integrase	NA	NA	NA	NA
3448771:3448800	attR	NA	NA	NA	NA

DBSCAN-SWA_24

3441956 : 3501254

Acinetobacter_phage(27.27%)

transposase,integrase,tRNA

attL 3482616:3482632|attR 3502842:3502858

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60472.1\|3441956_3443720_+\|tRNA	glutaminyl-tRNA synthetase	A0A222YZ70	Escherichia_phage	5.0e-162	50.0
AUR60473.1\|3443831_3444710_+	septum formation inhibitor	NA	NA	NA	NA
AUR60474.1\|3444822_3445638_+	cell division inhibitor MinD	NA	NA	NA	NA
AUR60475.1\|3445641_3445893_+	cell division topological specificity factor MinE	NA	NA	NA	NA
AUR61263.1\|3445977_3446994_-\|transposase	transposase	NA	NA	NA	NA
AUR60476.1\|3447324_3447546_-	ornithine carbamoyltransferase	NA	NA	NA	NA
AUR61264.1\|3449906_3450773_-	multidrug DMT transporter	NA	NA	NA	NA
AUR60477.1\|3451321_3452530_-	ABC transporter permease	NA	NA	NA	NA
AUR60478.1\|3452609_3454181_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60479.1\|3454298_3455234_-	glycosyl transferase	NA	NA	NA	NA
AUR60480.1\|3455422_3456367_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	8.4e-07	23.2
AUR60481.1\|3456435_3456606_-	hypothetical protein	NA	NA	NA	NA
AUR60482.1\|3456934_3462652_+	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	1.0e-195	39.5
AUR60483.1\|3462657_3463785_+	aminodeoxychorismate synthase	S4VT78	Pandoravirus	3.8e-38	37.8
AUR60484.1\|3463840_3464467_+	aminobenzoate synthetase	NA	NA	NA	NA
AUR61265.1\|3464738_3465755_+\|transposase	transposase	NA	NA	NA	NA
AUR60485.1\|3465850_3466561_-	short-chain dehydrogenase	NA	NA	NA	NA
AUR61266.1\|3466557_3467547_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60486.1\|3467642_3469274_+	acyl-CoA synthetase	NA	NA	NA	NA
AUR60487.1\|3469276_3470014_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUR60488.1\|3470169_3471042_-	heme biosynthesis protein HemY	NA	NA	NA	NA
AUR60489.1\|3471391_3472531_+	MFS transporter	NA	NA	NA	NA
AUR60490.1\|3472527_3473187_+	gamma-glutamyl cyclotransferase	NA	NA	NA	NA
AUR60491.1\|3473258_3473891_+	pyridoxine 5'-phosphate oxidase	NA	NA	NA	NA
AUR60492.1\|3473920_3474439_+	flavin reductase	NA	NA	NA	NA
AUR60493.1\|3474449_3475559_+	FAD-dependent oxidoreductase	NA	NA	NA	NA
AUR60494.1\|3475605_3476460_+	formyltetrahydrofolate deformylase	NA	NA	NA	NA
AUR60495.1\|3476461_3477364_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60496.1\|3478586_3479537_-\|integrase	integrase	NA	NA	NA	NA
AUR60497.1\|3479633_3480767_-	hypothetical protein	NA	NA	NA	NA
AUR60498.1\|3480803_3481052_-	hypothetical protein	NA	NA	NA	NA
AUR60499.1\|3481291_3482281_+\|integrase	integrase	NA	NA	NA	NA
AUR60500.1\|3482456_3483245_-	indole-3-glycerol-phosphate synthase	A0A0P0IR83	Acinetobacter_phage	5.1e-66	53.0
3482616:3482632	attL	NA	NA	NA	NA
AUR60501.1\|3483241_3484273_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	7.4e-73	42.7
AUR60502.1\|3484291_3484855_-	anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.1e-65	62.1
AUR60503.1\|3484910_3486431_-	anthranilate synthase component I	S4VT78	Pandoravirus	9.0e-43	32.1
AUR60504.1\|3486694_3487399_-	phosphoglycolate phosphatase	NA	NA	NA	NA
AUR60505.1\|3487406_3488135_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
AUR60506.1\|3488249_3488624_+	magnesium transporter ApaG	NA	NA	NA	NA
AUR60507.1\|3488666_3489956_+	membrane protein	NA	NA	NA	NA
AUR60508.1\|3489952_3491122_+	ubiquinone biosynthesis protein UbiH	NA	NA	NA	NA
AUR60509.1\|3491148_3491958_+	thiol:disulfide interchange protein DsbC	NA	NA	NA	NA
AUR60510.1\|3492017_3492953_+	2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	6.4e-15	27.7
AUR60511.1\|3492965_3493916_-\|integrase	integrase	NA	NA	NA	NA
AUR60512.1\|3494014_3494977_-	potassium ABC transporter ATPase	A0A0U2S5Z2	Escherichia_phage	4.6e-93	64.5
AUR60513.1\|3495008_3495368_-	dihydroneopterin aldolase	NA	NA	NA	NA
AUR60514.1\|3495492_3496395_+	oxidoreductase	G3MA85	Bacillus_virus	1.9e-08	24.0
AUR61267.1\|3496396_3498163_-	peptidase M61	NA	NA	NA	NA
AUR60515.1\|3498203_3498980_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60516.1\|3500303_3501254_-\|integrase	integrase	NA	NA	NA	NA
3502842:3502858	attR	NA	NA	NA	NA

DBSCAN-SWA_25

3516192 : 3574265

Planktothrix_phage(12.5%)

integrase,tRNA

attL 3513993:3514010|attR 3578397:3578414

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3513993:3514010	attL	NA	NA	NA	NA
AUR60529.1\|3516192_3517143_+\|integrase	integrase	NA	NA	NA	NA
AUR60530.1\|3517271_3518405_-	peptidase	NA	NA	NA	NA
AUR60531.1\|3518448_3519354_-	hydrolase	NA	NA	NA	NA
AUR60532.1\|3519356_3521057_-	hypothetical protein	G9BWD6	Planktothrix_phage	1.0e-15	32.7
AUR60533.1\|3521053_3521974_-	peptide ABC transporter permease	NA	NA	NA	NA
AUR60534.1\|3521981_3522959_-	ABC transporter permease	NA	NA	NA	NA
AUR60535.1\|3523017_3523977_-	succinylglutamate desuccinylase	NA	NA	NA	NA
AUR60536.1\|3526026_3526263_-	hypothetical protein	NA	NA	NA	NA
AUR60537.1\|3526389_3527253_-	ADP-dependent (S)-NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
AUR60538.1\|3527341_3528163_+	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60539.1\|3528242_3528980_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60540.1\|3528976_3529969_-	2-nitropropane dioxygenase	NA	NA	NA	NA
AUR61270.1\|3530121_3530745_+	TetR family transcriptional regulator	NA	NA	NA	NA
AUR60541.1\|3530789_3531938_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
AUR60542.1\|3534309_3535212_+\|integrase	integrase	NA	NA	NA	NA
AUR60543.1\|3535552_3536503_+\|integrase	integrase	NA	NA	NA	NA
AUR60544.1\|3536649_3537552_+\|integrase	integrase	NA	NA	NA	NA
AUR60545.1\|3537848_3538346_+	blue copper protein	NA	NA	NA	NA
AUR60546.1\|3538388_3540164_+	hypothetical protein	NA	NA	NA	NA
AUR60547.1\|3540171_3541038_+	copper resistance protein	NA	NA	NA	NA
AUR61271.1\|3541044_3541770_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60548.1\|3541939_3542170_+	hypothetical protein	NA	NA	NA	NA
AUR60549.1\|3542207_3542429_+	hypothetical protein	NA	NA	NA	NA
AUR60550.1\|3542948_3543719_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR60551.1\|3544032_3544623_+	cysteine dioxygenase	NA	NA	NA	NA
AUR60552.1\|3544656_3545985_-	amidase	NA	NA	NA	NA
AUR60553.1\|3546059_3547205_-	transporter	NA	NA	NA	NA
AUR60554.1\|3547316_3548315_+\|integrase	integrase	NA	NA	NA	NA
AUR60555.1\|3548277_3548712_+	carbon monoxide dehydrogenase	NA	NA	NA	NA
AUR60556.1\|3550228_3551113_+	membrane protein	NA	NA	NA	NA
AUR60557.1\|3551109_3552315_-	phospholipase	NA	NA	NA	NA
AUR60558.1\|3552311_3553172_-	endonuclease	NA	NA	NA	NA
AUR60559.1\|3553284_3555075_-\|tRNA	aspartyl-tRNA synthetase	A0A1V0SAC0	Catovirus	6.5e-08	25.5
AUR61272.1\|3555115_3555760_-	membrane protein	A0A2I7S9X1	Vibrio_phage	8.5e-11	28.4
AUR60560.1\|3555781_3556090_-	FmdB family transcriptional regulator	NA	NA	NA	NA
AUR61273.1\|3556255_3557542_-	membrane protein	NA	NA	NA	NA
AUR60561.1\|3561877_3563092_-	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
AUR60562.1\|3563197_3564187_+	D-arabinose 5-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	4.3e-38	37.7
AUR60563.1\|3564183_3564792_+	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	E3T535	Cafeteria_roenbergensis_virus	5.2e-10	26.1
AUR60564.1\|3564804_3565434_+	hypothetical protein	NA	NA	NA	NA
AUR60565.1\|3565430_3566051_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60566.1\|3566082_3566874_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	9.5e-20	27.4
AUR60567.1\|3567227_3567449_+	hypothetical protein	NA	NA	NA	NA
AUR60568.1\|3567725_3568181_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
AUR60569.1\|3568199_3569126_+	serine kinase	NA	NA	NA	NA
AUR60570.1\|3569179_3570466_-	alcohol dehydrogenase	NA	NA	NA	NA
AUR60571.1\|3571396_3572269_+	nucleotide-binding protein	A0A1P8D5W0	Corynebacterium_phage	2.4e-08	34.5
AUR60572.1\|3572265_3573216_+	lipoprotein	F5B3X9	Synechococcus_phage	6.9e-17	47.2
AUR60573.1\|3573314_3574265_+\|integrase	integrase	NA	NA	NA	NA
3578397:3578414	attR	NA	NA	NA	NA

DBSCAN-SWA_26

3706436 : 3749607

Streptococcus_phage(11.11%)

integrase,tRNA

attL 3744446:3744464|attR 3750230:3750248

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60682.1\|3706436_3707339_+\|integrase	integrase	NA	NA	NA	NA
AUR60683.1\|3707486_3708389_+\|integrase	integrase	NA	NA	NA	NA
AUR60684.1\|3708385_3709021_-	lysine transporter LysE	NA	NA	NA	NA
AUR60685.1\|3709150_3710050_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60686.1\|3710145_3710637_+	membrane protein	NA	NA	NA	NA
AUR60687.1\|3710683_3711649_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR60688.1\|3712782_3714024_+	2-aminoadipate aminotransferase	A0A1X9I5H2	Streptococcus_phage	1.9e-14	24.9
AUR60689.1\|3714137_3715154_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	3.5e-75	43.8
AUR60690.1\|3715188_3715665_-	membrane protein	NA	NA	NA	NA
AUR60691.1\|3715807_3716716_-	hydroxymethylglutaryl-CoA lyase	NA	NA	NA	NA
AUR60692.1\|3716829_3717942_-	DNA processing protein DprA	S6BFL3	Thermus_phage	1.9e-21	35.0
AUR61282.1\|3718042_3718528_-	AsnC family transcriptional regulator	NA	NA	NA	NA
AUR60693.1\|3718664_3719915_+	kynureninase	NA	NA	NA	NA
AUR60694.1\|3720016_3720529_+	peptide deformylase	E3SLL2	Synechococcus_phage	8.5e-22	43.3
AUR60695.1\|3720675_3721578_+\|integrase	integrase	NA	NA	NA	NA
AUR60696.1\|3721643_3722582_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.4e-09	35.7
AUR60697.1\|3722604_3723231_-	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA
AUR60698.1\|3723227_3723884_-	HAD family hydrolase	NA	NA	NA	NA
AUR60699.1\|3723880_3724483_-	hypothetical protein	NA	NA	NA	NA
AUR60700.1\|3724489_3725077_-	LOG family protein	A0A2I2L3F0	Orpheovirus	1.1e-07	23.3
AUR60701.1\|3725257_3725827_+	bacterioferritin	NA	NA	NA	NA
AUR60702.1\|3725897_3727217_-	ribosomal protein S12 methylthiotransferase	NA	NA	NA	NA
AUR60703.1\|3727323_3727515_-	4-oxalocrotonate tautomerase	NA	NA	NA	NA
AUR60704.1\|3727766_3729056_+	glycine/D-amino acid oxidase	NA	NA	NA	NA
AUR60705.1\|3729210_3730206_+	hypothetical protein	NA	NA	NA	NA
AUR60706.1\|3730290_3730965_+	GntR family transcriptional regulator	NA	NA	NA	NA
AUR60707.1\|3730961_3731864_-\|integrase	integrase	NA	NA	NA	NA
AUR60708.1\|3732073_3733315_+	ornithine--oxo-acid aminotransferase	A0A1V0SKB7	Klosneuvirus	4.0e-25	25.2
AUR60709.1\|3733311_3734256_+	arginase	A0A0N9R043	Chrysochromulina_ericina_virus	9.5e-27	33.3
AUR60710.1\|3734374_3735325_+\|integrase	integrase	NA	NA	NA	NA
AUR60711.1\|3735284_3736214_-	hypothetical protein	NA	NA	NA	NA
AUR60712.1\|3736267_3736603_-	alkylhydroperoxidase	NA	NA	NA	NA
AUR60713.1\|3736647_3737412_-	enoyl-CoA hydratase	NA	NA	NA	NA
AUR60714.1\|3737435_3738176_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR60715.1\|3738183_3739737_-	long-chain fatty acid--CoA ligase	A0A2K9L3I8	Tupanvirus	1.5e-13	22.6
AUR60716.1\|3739771_3740749_-	hypothetical protein	NA	NA	NA	NA
AUR60717.1\|3741021_3741603_-	ureidoglycolate hydrolase	NA	NA	NA	NA
AUR60718.1\|3741654_3748788_-	autotransporter	NA	NA	NA	NA
3744446:3744464	attL	NA	NA	NA	NA
AUR60719.1\|3749003_3749135_-	entericidin	NA	NA	NA	NA
AUR61283.1\|3749166_3749292_-	hypothetical protein	NA	NA	NA	NA
AUR60720.1\|3749400_3749607_-\|integrase	integrase	NA	NA	NA	NA
3750230:3750248	attR	NA	NA	NA	NA

DBSCAN-SWA_27

3755542 : 3791217

Burkholderia_phage(11.11%)

integrase

attL 3787133:3787192|attR 3791256:3791353

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUR60727.1\|3755542_3756445_+\|integrase	integrase	NA	NA	NA	NA
AUR60728.1\|3756455_3757097_+	hypothetical protein	NA	NA	NA	NA
AUR60729.1\|3757263_3757506_+	hypothetical protein	NA	NA	NA	NA
AUR60730.1\|3757652_3758555_+\|integrase	integrase	NA	NA	NA	NA
AUR60731.1\|3758590_3759058_+	hypothetical protein	Q3HQX1	Burkholderia_phage	2.1e-43	71.3
AUR60732.1\|3759291_3759669_+	hypothetical protein	NA	NA	NA	NA
AUR60733.1\|3759665_3759848_+	membrane protein	NA	NA	NA	NA
AUR60734.1\|3759851_3760838_+	DNA recombinase	H9C0R8	Aeromonas_phage	2.0e-67	57.3
AUR60735.1\|3760834_3761482_+	exonuclease	A0A0U2BXF3	Paracoccus_phage	2.0e-31	41.4
AUR60736.1\|3761539_3762067_+	hypothetical protein	NA	NA	NA	NA
AUR60737.1\|3762103_3763288_+	hypothetical protein	A0A291L9X3	Bordetella_phage	1.5e-24	37.8
AUR60738.1\|3763298_3763640_+	hypothetical protein	A0A0H5ARN8	Pseudomonas_phage	1.0e-10	45.3
AUR60739.1\|3763632_3763752_+	membrane protein	NA	NA	NA	NA
AUR60740.1\|3763752_3763953_+	hypothetical protein	NA	NA	NA	NA
AUR60741.1\|3763949_3764939_-\|integrase	integrase	A0A1B1P9F9	Acinetobacter_phage	4.4e-75	44.4
AUR60742.1\|3766425_3768396_-	hypothetical protein	NA	NA	NA	NA
AUR60743.1\|3768637_3769036_+	hypothetical protein	NA	NA	NA	NA
AUR60744.1\|3769044_3769968_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUR60745.1\|3770473_3771376_+\|integrase	integrase	NA	NA	NA	NA
AUR60746.1\|3771606_3773298_-	insertase	NA	NA	NA	NA
AUR60747.1\|3773346_3773619_-	membrane protein insertion efficiency factor	A0A2H4PQM5	Staphylococcus_phage	7.0e-15	52.2
AUR60748.1\|3773615_3773987_-	ribonuclease P	NA	NA	NA	NA
AUR60749.1\|3774082_3774217_-	50S ribosomal protein L34	NA	NA	NA	NA
AUR60750.1\|3774622_3776032_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA
AUR60751.1\|3776034_3777144_+	DNA polymerase III subunit beta	B4UTW9	Rhizobium_phage	1.2e-41	32.6
AUR60752.1\|3777238_3779692_+	DNA gyrase subunit B	G3M9Z3	Bacillus_virus	2.3e-112	34.8
AUR60753.1\|3779810_3780602_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUR60754.1\|3780745_3782149_+	amidase	NA	NA	NA	NA
AUR61284.1\|3782187_3783159_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUR61285.1\|3783243_3783447_+	hypothetical protein	NA	NA	NA	NA
AUR60755.1\|3783577_3784741_+	lactate dehydrogenase	NA	NA	NA	NA
AUR60756.1\|3784828_3785674_+	AraC family transcriptional regulator	NA	NA	NA	NA
3787133:3787192	attL	NA	NA	NA	NA
AUR60757.1\|3787278_3788181_+\|integrase	integrase	NA	NA	NA	NA
AUR60758.1\|3788177_3788522_-	hypothetical protein	NA	NA	NA	NA
AUR60759.1\|3788735_3789110_-	MerR family transcriptional regulator	NA	NA	NA	NA
AUR60760.1\|3789184_3790243_+	Zn-dependent hydrolase	NA	NA	NA	NA
AUR60761.1\|3790266_3791217_-\|integrase	integrase	NA	NA	NA	NA
3791256:3791353	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP012135

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection