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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP016887 Bordetella pertussis strain J043, complete genome 4 crisprs DEDDh,csa3,cas3,DinG 0 0 24 0

Results visualization

1. CP016887
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016887_1 252371-252455 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016887_2 412755-412848 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016887_3 765535-765644 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP016887_4 3044021-3044137 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 64055 57 Natrialba_phage(12.5%) protease,tRNA,integrase attL 14681:14696|attR 69426:69441
DBSCAN-SWA_2 69085 : 123122 54 Planktothrix_phage(20.0%) transposase,integrase,tRNA attL 76859:76874|attR 123514:123529
DBSCAN-SWA_3 165936 : 302703 117 Klosneuvirus(10.53%) protease,integrase,tRNA attL 206600:206659|attR 302704:302806
DBSCAN-SWA_4 393107 : 447575 48 Heterosigma_akashiwo_virus(14.29%) integrase attL 399510:399526|attR 449755:449771
DBSCAN-SWA_5 455784 : 502885 51 uncultured_Caudovirales_phage(21.05%) tRNA,terminase,tail,integrase attL 476846:476861|attR 495109:495124
DBSCAN-SWA_6 715823 : 780280 50 Pandoravirus(16.67%) transposase,integrase,tRNA attL 749303:749332|attR 786936:786965
DBSCAN-SWA_7 864978 : 897878 30 Pseudomonas_phage(33.33%) integrase,tRNA,protease attL 892950:892967|attR 899879:899896
DBSCAN-SWA_8 902390 : 950002 46 Erwinia_phage(10.0%) integrase,tRNA attL 894301:894318|attR 954424:954441
DBSCAN-SWA_9 1092046 : 1157305 49 Klebsiella_phage(16.67%) integrase,tRNA,protease attL 1148425:1148442|attR 1158725:1158742
DBSCAN-SWA_10 1166894 : 1217543 44 Ostreococcus_lucimarinus_virus(25.0%) integrase attL 1167759:1167818|attR 1217544:1217630
DBSCAN-SWA_11 1239923 : 1296696 40 uncultured_Mediterranean_phage(28.57%) integrase,protease attL 1295644:1295703|attR 1305715:1305863
DBSCAN-SWA_12 1304721 : 1376631 56 Streptococcus_phage(14.29%) transposase,integrase attL 1324472:1324493|attR 1381923:1381944
DBSCAN-SWA_13 1411105 : 1468858 52 Salmonella_phage(28.57%) integrase attL 1424900:1424916|attR 1471591:1471607
DBSCAN-SWA_14 1803156 : 1862052 59 Enterobacteria_phage(33.33%) integrase attL 1820277:1820295|attR 1867603:1867621
DBSCAN-SWA_15 1898749 : 1942023 45 Staphylococcus_phage(25.0%) integrase attL 1906423:1906441|attR 1949790:1949808
DBSCAN-SWA_16 2302052 : 2367601 60 Lake_Baikal_phage(21.43%) integrase,tRNA,protease attL 2348295:2348316|attR 2372786:2372807
DBSCAN-SWA_17 2381102 : 2436367 54 uncultured_Mediterranean_phage(14.29%) transposase,integrase,tRNA attL 2421462:2421477|attR 2436676:2436691
DBSCAN-SWA_18 2457158 : 2528318 55 Brazilian_cedratvirus(11.11%) integrase attL 2458635:2458652|attR 2531951:2531968
DBSCAN-SWA_19 2548671 : 2587273 30 Lactobacillus_phage(33.33%) integrase,tRNA,protease attL 2557463:2557522|attR 2585517:2585619
DBSCAN-SWA_20 2613561 : 2679185 60 Planktothrix_phage(33.33%) integrase,tRNA attL 2670907:2670924|attR 2680820:2680837
DBSCAN-SWA_21 2730719 : 2794065 55 uncultured_Caudovirales_phage(40.0%) transposase,integrase attL 2731624:2731683|attR 2794151:2794295
DBSCAN-SWA_22 2963882 : 3014606 44 Oenococcus_phage(50.0%) integrase,tRNA attL 2972457:2972474|attR 3020017:3020034
DBSCAN-SWA_23 3055257 : 3117317 52 Catovirus(20.0%) transposase,tRNA,integrase attL 3099359:3099378|attR 3124972:3124991
DBSCAN-SWA_24 3344925 : 3399056 44 Vibrio_phage(25.0%) transposase,integrase,holin attL 3395388:3395407|attR 3407022:3407041
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage