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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP019869 Bordetella pertussis strain J042 chromosome, complete genome 6 crisprs cas3,DinG,csa3,DEDDh 1 0 30 0

Results visualization

1. CP019869
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_1 252846-252930 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_2 412761-412854 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_3 1075330-1075424 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_4 1205894-1206026 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_5 1950968-1951095 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019869_6 3502217-3502326 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP019869_4 4.1|1205945|31|CP019869|CRISPRCasFinder 1205945-1205975 31 CP019869.1 1950943-1950973 0 1.0
CP019869_4 4.1|1205945|31|CP019869|CRISPRCasFinder 1205945-1205975 31 CP019869.1 2276390-2276420 0 1.0
CP019869_4 4.1|1205945|31|CP019869|CRISPRCasFinder 1205945-1205975 31 CP019869.1 2773763-2773793 0 1.0

1. spacer 4.1|1205945|31|CP019869|CRISPRCasFinder matches to position: 1950943-1950973, mismatch: 0, identity: 1.0

cttttttgccttggggcggcccggcggcaaa	CRISPR spacer
cttttttgccttggggcggcccggcggcaaa	Protospacer
*******************************

2. spacer 4.1|1205945|31|CP019869|CRISPRCasFinder matches to position: 2276390-2276420, mismatch: 0, identity: 1.0

cttttttgccttggggcggcccggcggcaaa	CRISPR spacer
cttttttgccttggggcggcccggcggcaaa	Protospacer
*******************************

3. spacer 4.1|1205945|31|CP019869|CRISPRCasFinder matches to position: 2773763-2773793, mismatch: 0, identity: 1.0

cttttttgccttggggcggcccggcggcaaa	CRISPR spacer
cttttttgccttggggcggcccggcggcaaa	Protospacer
*******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 65104 59 Natrialba_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_2 70134 : 124171 52 Planktothrix_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_3 137255 : 209776 59 Bacillus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_4 252940 : 305276 49 Bacillus_phage(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_5 393113 : 526136 108 Bacillus_virus(13.64%) transposase,integrase attL 456121:456138|attR 531643:531660
DBSCAN-SWA_6 655400 : 723715 59 Acanthocystis_turfacea_Chlorella_virus(11.11%) tRNA,transposase NA
DBSCAN-SWA_7 734375 : 814221 59 Planktothrix_phage(40.0%) transposase NA
DBSCAN-SWA_8 869777 : 923908 43 Ostreococcus_lucimarinus_virus(25.0%) holin,transposase NA
DBSCAN-SWA_9 1077487 : 1147761 59 Enterococcus_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_10 1151513 : 1218703 53 Planktothrix_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_11 1226330 : 1286166 42 Erysipelothrix_phage(50.0%) tRNA,transposase NA
DBSCAN-SWA_12 1349521 : 1426320 60 Bacillus_virus(22.22%) tRNA,transposase NA
DBSCAN-SWA_13 1579445 : 1638716 54 Bacillus_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_14 1680565 : 1718121 33 Streptococcus_virus(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_15 1738474 : 1809634 54 Ectocarpus_siliculosus_virus(10.0%) transposase NA
DBSCAN-SWA_16 1830425 : 1885691 51 Moraxella_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_17 1899192 : 1949561 43 Methanothermobacter_phage(10.0%) protease,tRNA,transposase NA
DBSCAN-SWA_18 1962754 : 2025586 52 Planktothrix_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_19 2646124 : 2710339 60 Salmonella_phage(16.67%) protease,tRNA,transposase NA
DBSCAN-SWA_20 2855805 : 2916954 48 Bacillus_virus(20.0%) tRNA,transposase NA
DBSCAN-SWA_21 2940879 : 3005664 48 Pelagibacter_phage(16.67%) protease,transposase NA
DBSCAN-SWA_22 3011894 : 3068992 53 Vibrio_phage(20.0%) transposase NA
DBSCAN-SWA_23 3081002 : 3132557 48 Ostreococcus_lucimarinus_virus(16.67%) tRNA,transposase NA
DBSCAN-SWA_24 3205879 : 3269714 58 Pseudomonas_phage(30.0%) protease,tRNA,transposase NA
DBSCAN-SWA_25 3317856 : 3365470 47 Bovine_alphaherpesvirus(10.0%) transposase NA
DBSCAN-SWA_26 3375397 : 3401883 25 Klosneuvirus(33.33%) protease,tRNA,transposase,integrase attL 3384679:3384697|attR 3404567:3404585
DBSCAN-SWA_27 3450770 : 3571046 104 Acinetobacter_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_28 3585984 : 3634746 38 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_29 3644037 : 3692687 58 uncultured_Caudovirales_phage(19.05%) tail,terminase,tRNA,transposase NA
DBSCAN-SWA_30 3765783 : 3806690 38 uncultured_virus(25.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage