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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025941 Bacillus subtilis strain BJ3-2 chromosome, complete genome 1 crisprs csa3,DEDDh,cas3,RT,WYL,DinG 0 1 11 0
CP025942 Bacillus subtilis strain BJ3-2 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP025941
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025941_1 681426-681533 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP025941_1 1.1|681450|60|CP025941|CRISPRCasFinder 681450-681509 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 1.1|681450|60|CP025941|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 120946 : 157897 50 uncultured_Caudovirales_phage(33.33%) terminase,capsid,holin,tail,portal NA
DBSCAN-SWA_2 296911 : 392137 108 Bacillus_phage(63.83%) terminase,head,portal,protease,capsid,coat,holin,tail,tRNA NA
DBSCAN-SWA_3 1382569 : 1486215 107 Bacillus_phage(21.43%) protease,lysis,coat,bacteriocin,holin,tRNA NA
DBSCAN-SWA_4 1935665 : 2000784 81 Bacillus_phage(41.86%) terminase,integrase,capsid,tRNA,holin,tail,portal attL 1948589:1948636|attR 2001914:2001961
DBSCAN-SWA_5 2534727 : 2543092 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_6 3036366 : 3070477 39 Planktothrix_phage(20.0%) coat,tRNA NA
DBSCAN-SWA_7 3097038 : 3178877 93 Bacillus_phage(25.64%) terminase,protease,coat,tRNA,holin,tail,portal NA
DBSCAN-SWA_8 3610347 : 3616905 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_9 3819915 : 3822507 8 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_10 3830804 : 3837390 10 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_11 4053116 : 4061011 10 Staphylococcus_phage(57.14%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage