CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025744	Brucella abortus strain CIIMS-NV-4 chromosome II, complete sequence	1 crisprs	csa3,cas3,DEDDh	0	0	0	0
CP025743	Brucella abortus strain CIIMS-NV-4 chromosome I, complete sequence	0 crisprs	csa3,WYL,DEDDh	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP025744_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025744_1

181991-182091

Orphan

Consensus_repeat	Method
ATGGACTTCTTGGAAGTCCATGCCGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025744_1

>merge|CP025744|1|181991-182091|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCCCCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTTATGGACTTCTTAGAAGTCCATGCCGCCC

>CP025744|1|1|181991-182091|CRISPRCasFinder
ATGGACTTCTTGGAAGTCCATGCCGCCC	CCGCGCCGCTTTGCGGCGCAGGCATTTAGTTCATGGGCGAGCTTT
ATGGACTTCTTAGAAGTCCATGCCGCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP025744.1\|AUS58522.1\|183803_184100_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
CP025744.1\|AUS58530.1\|193929_194493_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP025744.1\|AUS58518.1\|179524_180916_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
CP025744.1\|AUS58527.1\|190975_191536_+\|cytochrome-b	unknown	unknown	gnl\|CDD\|225580
CP025744.1\|AUS58529.1\|192203_193949_+\|pseudouridylate-synthase	unknown	unknown	gnl\|CDD\|224108
CP025744.1\|AUS59342.1\|184580_185429_+\|TIGR01459-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319827
CP025744.1\|AUS58517.1\|179020_179422_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
CP025744.1\|AUS58523.1\|184188_184479_+\|hypothetical-protein	unknown	unknown	unknown
CP025744.1\|AUS58513.1\|174084_175593_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|223202
CP025744.1\|AUS58526.1\|189959_190631_+\|hypothetical-protein	unknown	unknown	unknown
CP025744.1\|AUS58519.1\|181065_181320_-\|hypothetical-protein	unknown	unknown	unknown
CP025744.1\|AUS58516.1\|178721_178961_+\|hypothetical-protein	unknown	unknown	unknown
CP025744.1\|AUS58525.1\|186849_189768_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237514
CP025744.1\|AUS58520.1\|181649_181871_-\|hypothetical-protein	unknown	unknown	unknown
CP025744.1\|AUS58514.1\|176728_177424_+\|ATP-phosphoribosyltransferase-catalytic-subunit-HisG	unknown	unknown	gnl\|CDD\|237438
CP025744.1\|AUS58512.1\|173356_173974_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP025744.1\|AUS58515.1\|177496_178735_-\|glucose/galactose-transporter	unknown	unknown	gnl\|CDD\|340952
CP025744.1\|AUS59341.1\|175601_176732_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|183413
CP025744.1\|AUS58528.1\|191589_192063_-\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
CP025744.1\|AUS58524.1\|185516_186506_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536

Protein	Function_ID	Function_description	E-value
CP025744.1\|AUS58522.1\|183803_184100_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.80408e-54
CP025744.1\|AUS58524.1\|185516_186506_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	2.77791e-157
CP025744.1\|AUS58529.1\|192203_193949_+\|pseudouridylate-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.08227e-83
CP025744.1\|AUS59342.1\|184580_185429_+\|TIGR01459-family-HAD-type-hydrolase	gnl\|CDD\|319827	cd07525, HAD_like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.51221e-90
CP025744.1\|AUS58517.1\|179020_179422_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.4232e-20
CP025744.1\|AUS58513.1\|174084_175593_+\|histidine--tRNA-ligase	gnl\|CDD\|223202	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].	2.87411e-159
CP025744.1\|AUS58515.1\|177496_178735_-\|glucose/galactose-transporter	gnl\|CDD\|340952	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of L-fucose permease (also called L-fucose-proton symporter) and similar proteins such as glucose/galactose transporter and N-acetyl glucosamine transporter NagP. L-fucose permease facilitates the uptake of L-fucose across the boundary membrane with the concomitant transport of protons into the cell; it can also transport L-galactose and D-arabinose. Glucose/galactose transporter functions in the uptake of of glucose and galactose. The FucP-like subfamily belongs to the bacterial fucose permease, eukaryotic Major facilitator superfamily domain-containing protein 4 (FucP/MFSD4) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.18971e-166
CP025744.1\|AUS58527.1\|190975_191536_+\|cytochrome-b	gnl\|CDD\|225580	COG3038, CybB, Cytochrome B561 [Energy production and conversion].	7.89145e-52
CP025744.1\|AUS58525.1\|186849_189768_+\|isoleucine--tRNA-ligase	gnl\|CDD\|237514	PRK13804, ileS, isoleucyl-tRNA synthetase; Provisional.	0
CP025744.1\|AUS58530.1\|193929_194493_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	1.21532e-78
CP025744.1\|AUS58514.1\|176728_177424_+\|ATP-phosphoribosyltransferase-catalytic-subunit-HisG	gnl\|CDD\|237438	PRK13583, hisG, ATP phosphoribosyltransferase.	1.16784e-135
CP025744.1\|AUS58512.1\|173356_173974_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	9.51794e-45
CP025744.1\|AUS58518.1\|179524_180916_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP025744.1\|AUS59341.1\|175601_176732_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|183413	PRK12295, hisZ, ATP phosphoribosyltransferase regulatory subunit; Provisional.	2.67267e-157
CP025744.1\|AUS58528.1\|191589_192063_-\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.96751e-65

>CP025744.1|AUS58520.1|181649_181871_-|hypothetical-protein
MLLPIMSSNPVSILALPRYVLLMQAFLPPVESLPNPGEPPLPGLTFLTVPDARNGHTNSVKLSPFFPAPHNHF
>CP025744.1|AUS58519.1|181065_181320_-|hypothetical-protein
MRKELPIETAPKDGRKITVIWIDDDDQRNESIAQYRTLEQLRAGGGQWDEADTGWWTFTDNKTQRKIEPTAWIRETDDDESQED
>CP025744.1|AUS58518.1|179524_180916_-|class-II-fumarate-hydratase
MAATRTETDTFGPIDVPADRYWGAQTQRSLQNFRIGGERMPLPLVHALGVVKRAAAETNIALGKLDPVLGQVIAVAASEVIEGKLDDHFPLVVWQTGSGTQSNMNANEVISNRAIELLGGEMGSKKPIHPNDHVNMSQSSNDSFPTAIHIATAVETVNRLYPALEHLTKALKVKEEAFKDIIKIGRTHTQDATPVTLGQEFSGYRAALEYARHRLEQSLADVFLLAQGGTAVGTGLNAPVGFDKGFAEAVSEITGLSFKTAPNKFEALASHGAVLNFHGSLNALAADLFKIANDIRFLGSGPRSGLGELSLPENEPGSSIMPGKVNPTQAEAMTMVATQVFGNQTAVTVAASQGHFELNVFKPVIAYNVLQSIRLLSDTMVSFADHCVEGIEPNTARIKELLERSLMLVTALAPAIGYDNAARIAKTAHKNGTTLREEALASGLVSEEDYDRLVRAERMIAPQ
>CP025744.1|AUS58517.1|179020_179422_-|DoxX-family-protein
MSSITPKANGAATLIIRVFLSVLFIIAGYNKLTALDGTADYFASIGLPMPIVTAVVVGLIEFVGGLAILFGFKTRIAAVIVGLFTLGATLVAHMDFAEGMNLLIAQKNLAIAGGLFLLFLHGAGSLSIDARRG
>CP025744.1|AUS58516.1|178721_178961_+|hypothetical-protein
MEVAIFLYKLNYYKMRRWAGACVKSGGYLISQDIAMQSFRTLSAGFPPIVGIRRIANIFFVVPPLQLRKISMEKQVAVM
>CP025744.1|AUS58515.1|177496_178735_-|glucose/galactose-transporter
MATSIPTNNPLHTETSSQKNYGFALTSLTLLFFMWGFITCLNDILIPHLKNVFQLNYTQSMLIQFCFFGAYFIVSLPAGQLVKRISYKRGIVVGLIVAAIGCALFIPAASYRVYALFLGALFVLASGVTILQVAANPYVTILGKPETAASRLTLTQAFNSLGTTVAPVFGAVLILSAATDATVNAEADAVRFPYLLLALAFTVLAIIFAILKPPDVQEDEPALSDKKEGSAWQYRHLVLGAIGIFVYVGAEVSVGSFLVNFLSDPTVAGLSETDAAHHVAYFWGGAMVGRFIGSAAMRYIDDGKALAFNAFVAIILLFITVATTGHIAMWSVLAIGLFNSIMFPTIFSLALHGLGSHTSQGSGILCLAIVGGAIVPLIQGALADAIGIHLAFLMPIICYAYIAFYGLIGSKS
>CP025744.1|AUS58514.1|176728_177424_+|ATP-phosphoribosyltransferase-catalytic-subunit-HisG
MSVTLALPSKGRLKEKTLAVLEKAGYKVVLPDDDRNYRARVEGEDDLDILFLSASEIARELGYGSVDLGVTGEDLVRETLAHADERVAIEAQLGFGHADVVVAVPEVWRDVTTMADLDDVAADFRQRHGRRLRIATKYWRLTQQFFSQKHGIQVYRIVESLGATEGAPAAGSADMIVDITSTGSTLRANRLKVLEDGIILRSQACLVSARRSHTSRRVEEIAARIRAGLEI
>CP025744.1|AUS59341.1|175601_176732_+|ATP-phosphoribosyltransferase-regulatory-subunit
MVGSRTSPIFNALRVELNAREAELVEIPLIQPADPFLDMAGEDLRRRIFLTENENGDSLCLRPEFTIPVCRNHIALNAATPKRYAYLGEVFRQRRDGAAEFLQAGIEDLGAADEAASDARSLADALSCVKAIAPDAPLEIVLGDQSVFAGMLKALGLPQGWRKKLLRSFGDAHSMDLALAELTGTQRRDPLPESLAVLVAEGDEIGLARMLEAEMLEAGISPGAGRTPVEIARRLIEKEDLAATHFPAAALDLLRQFLAIRVSLDMAAVTLRAFAADNALDLGAVLQKFEARADAIAQAGIEMKDIIYDASFGRPLDYYTGLVYEIRDASNRQDGVLAGGGRYDRLLTMLGACEAIPGVGFSIWLDRLQALAGEKQ
>CP025744.1|AUS58513.1|174084_175593_+|histidine--tRNA-ligase
MADKADKMKARLPRGFVDRVPDDLRAAEKMMATIREVYDLYGFEPVETPLVEYTDALGKFLPDQDRPNEGVFSFQDDDEQWLSLRYDLTAPLARYVAENFETLPKPYRSYRNGWVFRNEKPGPGRFRQFMQFDADTVGAPNVSADAEMCMMMADTLERLGIQRGDYAIRVNNRKVLDGVLDAIGLEGEGNAAKRLNVLRAIDKLDKFGPEGVRLLLGKGRLDESGDFTKGAQLPEAAIEKVLAFTAAGGADGAQTIANLQAVVAGNAKGEEGVQELADMQALFFAGGYEGRVKIDPSVVRGLEYYTGPVFEAELLFDVTNEDGQKVVFGSVGGGGRYDGLVSRFRGEPVPATGFSIGVSRLMTALKNLGKLDVSDTVGPVVVLVMDKDTQNLGRYQKMVSDLRKAGIRAEMYVGGSGMKAQMKYADRRAAPCVVIQGSQEREAGEVQIKDLVEGKRLSAEIEDNVTWLESRPAQITVREDGLVDAVREILDAQARDRAEQSK
>CP025744.1|AUS58512.1|173356_173974_+|LysE-family-translocator
MDLMSLVAFAGILVVAAGTPGPKVGALVARVISRGHKGVFPFMFGLWLGDAVWLSLAVWGLSALAHTFQTAFLVLKYAGVAYLIYLSWKMWFAPVDEEADENTIPRQGEGKRLFLSALGVTLGNPKIMVFYLAILPTVVDITHVSLTGWVELLLVMFMVLAAVDTAWVVLAAQARKFLRSPRMMRLANRTSAGMMAGAAVAIAAR
>CP025744.1|AUS58522.1|183803_184100_-|co-chaperone-GroES
MADIKFRPLHDRVVVRRVESEAKTAGGIIIPDTAKEKPQEGEVVAAGAGARDEAGKLVPLDVKAGDRVLFGKWSGTEVKIGGEDLLIMKESDILGIVG
>CP025744.1|AUS58523.1|184188_184479_+|hypothetical-protein
MVLEIEAACFFVKEDCRSGWRFLRGTAGFPACFGLWRNAHSTLSGGLQHVVQAMWAIMIAKGFNLHKNVCPWLIRHEIMMRQFVLLKRGDRMGRLG
>CP025744.1|AUS59342.1|184580_185429_+|TIGR01459-family-HAD-type-hydrolase
MILPERLDDLTDRYDAIFCDVWGVVHNGETSFAPAIAALQRARAKGVTIILVTNSPRPHPGVVAQMSLLGVPEDAYDRVVTSGDVTRDLIAEGPRRIFHIGCERELAIYDGLDVELVEEFEAAGVVCTGLYDDEVETPEDYRELLQRLRARNLPFICANPDIMVERGPRLIWCAGALAREYGQLGGRTLIAGKPHRPIYEAALRAVESIRGGSVDKSRILGIGDGVLTDVKGAADFGLDVLYISGGVHAADYAVNGDLDMAKMEAFLEKHGHRPIASLHALV
>CP025744.1|AUS58524.1|185516_186506_+|bifunctional-riboflavin-kinase/FAD-synthetase
MKKSSFQRLTGTEGLPPALHDCVVAIGNFDGVHRGHQAVLERALELAERESRPAVVLTFEPHPRSFFKQDQPVDRLTDAAEKAEILRLMGFDAVMEQPFTAEFSQRSAEDFVQHILVEKLRASRVVTGYDFHFGKGRRGTPEFLCEAGKKAGFSVTLVDAFTDEGGMLVSSTRIRNLLSEGEVAEAAGLLGYRYRICGEVIHGKKLGRTLGFPTANMALAPQTSLKHGIYAVRFRLDDAMLYDGVASFGRRPTVDDEGAPLLETFLFDFSGDLYGKTAAVSFFGFLRGEVKFDGLDPLIDQMKQDEAQARALLADVRPISGLDRMLSFN
>CP025744.1|AUS58525.1|186849_189768_+|isoleucine--tRNA-ligase
MTDTTKIDYSKTLYLPQTEFPMRAGLPQREPLFVQRWEEMNLYKKLREQAKDRPLYVLHDGPPYANGNIHIGHALNKILKDVITRSFQMRGYNSNYVPGWDCHGLPIEWKIEEKYRAAGKNKDEVPINEFRKECREFASNWIKVQTEEFKRLAILGDFENPYTTMNFHAEARIAGELLKFAASGQLYRGSKPVMWSVVERTALAEAEVEYHDIESDMIWVKFPVAGEVATENDLSGSAVVIWTTTPWTIPGNRAVSYSSRIEYGLFEITEAENDFGPRPGERLVFADKLVEECCAKAKLQFKRLRSVSAEELGKIVLDHPLKGFGGGYEFVVPMLDGDHVTDDAGTGFVHTAPSHGREDFEAWMDNARQLEARGIDPNIPFPVGDDGFYTKDAPGFGPDREGGPARVIDDNGKKGDANKVVIEQLIAADKLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKNLGDGTTLRSRALKAIDETRFVPAAGQTRLRSMIEGRPDWVLSRQRAWGVPICVFVDEEGNILQDDAVNKRIMDAFEKEGADAWFADGARERFLGARAGEGWTQVRDILDVWFDSGSTHTFTLEDRPDLKWPADVYLEGSDQHRGWFHSSLLESCGTRGRAPYNAVVTHGFTMDEHGKKMSKSLGNTVTPQDVIKESGADILRLWVMTTDYWEDQRLGKSIIQTNIDAYRKLRNTIRWMLGTLAHDEGENVAYADLPELERLMLHRLTELDELVRSGYDTFDFKRIARALVDFMNVELSAFYFDIRKDALYCDAPSSIRRKAALQTVREIFVRLTTWLAPMLPFTMEEAWLDRYPQSVSIHAEQFRPTPAEWRDDVLAEKWRKVRAVRRVVTGALELERADKRIGSSLEAAPVVYIADKSLSDSLEGLDFAEICITSGISVSDAAAPEGAFTLGDVKGVAVVPERAKGEKCARSWRYTTDVGADPEFPEVSARDAAALRELQALGKL
>CP025744.1|AUS58526.1|189959_190631_+|hypothetical-protein
MKIEGRVLVLMTALAGLSLSGCVSSPTYGTDKSAGAQLLDDVSNMASFGQGKKKERIDYKPRPDLVRPAPGDKGYLPAPQQSLASSSDPNWPESPEQRRKRVRDEITAHRDDPNYVSPVLQDAPVADNIRTALPRGNSRREDYASRTPTSDPAKVAALKAARAQQNQGSATTRRYLSEPPLAYRQPASTAAVGELGPDEAQKERERKKAASGSRGWRDYLPWN
>CP025744.1|AUS58527.1|190975_191536_+|cytochrome-b
MSSKTYIWDDRSGYGLVSRGFHWLMALLFLWQFASAILRVFAKDTPIYSFFWSAHFQLGFALLVLALLRGVWGLMNIHRRPHKDGAIGKLAVLGHLAIYVLMITIPSLALLRAYGSGRGFSFLGMPIFAKTDIQNAMLTAPANALHGPLGWALLAAIVGHVAMALVYHFALRDDTLRYMTGHGTPN
>CP025744.1|AUS58528.1|191589_192063_-|nucleoside-deaminase
MRKAASITKANSATPMDIALEEAHAAGERGEVPIGAVIVRDGEIIARAGNRTREFNDVTAHAEILTIRQAGEMLGSERLIDCDLYVTLEPCAMCAAAISFARIRRLYYGASDPKGGGIEHGGRFYTQPTCHHAPEIYPGFCEADARKILKDFFREKR
>CP025744.1|AUS58529.1|192203_193949_+|pseudouridylate-synthase
MMAQGDAVTLLKGLYQMTTEDDNKGGKPPHGRKGHSDRPGRPDWDSRPRREGGDRDKPRKFGSRGAPVEEETSERIAKRLARAGIASRREAETMIAAGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLGDLEEGAVREIKGRTLRDQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGELPQEGERRRAPREREWISSTGERRRGREEKTEKVEPRRRGNANVWMAPGARPKGEKEAAKPARVEHQQPHRSAKFSGDLQMRPRRFSEEERGGEESGERRYKRPEGRFEREGGRPDNREKYEKHEGAGKERRPGKRERAELRNAEGQTTERGKGGFEGRKPGKPGGPRSEGRFGGADRDTRSGPRGSGPRGAGDGPRRGHDGKPGGKPGGKPTGRPGGKPGTKPGGGGRSGGGGADRRR
>CP025744.1|AUS58530.1|193929_194493_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MRIVGGKFRGRALVTPSTNAIRPTTDRTRESLFNILAHSFPDKVEGVRVLDLFAGTGALGLEALSRGARYATFVEESAEGRGILRQNIEALGLQGHTKILRRDACQLGIVGTMEPFDLVFADPPYGRRMGEKAFLSALQGGWLNPDALLVLEEDAQAALELDDRFAVREERNYGGTVIRLIELKAAS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

545749 : 651907

100

Paenibacillus_phage(10.0%)

protease,head,portal,capsid,tail,integrase,transposase,holin

attL 644486:644500|attR 654378:654392

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUS56780.1\|545749_546506_+\|transposase	IS5/IS1182 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.7e-16	41.0
AUS56781.1\|546877_547996_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AUS56782.1\|548753_548906_-	hypothetical protein	NA	NA	NA	NA
AUS56783.1\|549140_549323_-	hypothetical protein	NA	NA	NA	NA
AUS58242.1\|549665_550428_+\|transposase	IS5/IS1182 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.3e-21	40.8
AUS56784.1\|550325_550643_-	hypothetical protein	NA	NA	NA	NA
AUS56785.1\|551253_552609_+	phosphomannomutase	NA	NA	NA	NA
AUS56786.1\|552679_554104_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	9.0e-53	30.8
AUS56787.1\|554136_555309_+	AGE family epimerase/isomerase	NA	NA	NA	NA
AUS56788.1\|555391_556501_+	glycosyl transferase family 1	NA	NA	NA	NA
AUS56789.1\|556981_557194_-	hypothetical protein	NA	NA	NA	NA
AUS56790.1\|557192_558728_+	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.4e-14	25.3
AUS56791.1\|558748_559750_+	ABC transporter permease	NA	NA	NA	NA
AUS56792.1\|559828_560791_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUS56793.1\|560848_561901_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
AUS56794.1\|561908_563006_+	gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
AUS56795.1\|563047_564355_-	xylose isomerase	NA	NA	NA	NA
AUS56796.1\|564401_565853_-	xylulokinase	NA	NA	NA	NA
AUS56797.1\|565885_566917_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
AUS56798.1\|567178_567697_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUS56799.1\|567603_568173_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUS56800.1\|568710_570174_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AUS56801.1\|570325_572008_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	7.9e-40	30.6
AUS58243.1\|572010_572607_-	transcriptional regulator	NA	NA	NA	NA
AUS58244.1\|572496_572787_+	hypothetical protein	NA	NA	NA	NA
AUS56802.1\|572797_573820_+	asparaginase	NA	NA	NA	NA
AUS56803.1\|573864_574335_+	transcription elongation factor	NA	NA	NA	NA
AUS56804.1\|574331_574721_-	type II toxin-antitoxin system death-on-curing family toxin	A0A1B3AYM0	Gordonia_phage	3.5e-07	44.6
AUS56805.1\|574717_574948_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AUS56806.1\|575008_576001_-	magnesium transporter CorA	NA	NA	NA	NA
AUS56807.1\|576156_576834_+	FadR family transcriptional regulator	NA	NA	NA	NA
AUS56808.1\|578165_578528_-	hypothetical protein	NA	NA	NA	NA
AUS56809.1\|578863_580375_+	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	44.3
AUS56810.1\|580564_581281_-	L,D-transpeptidase	NA	NA	NA	NA
AUS56811.1\|581339_581582_+	hypothetical protein	NA	NA	NA	NA
AUS56812.1\|581583_582237_-	haloacid dehalogenase type II	NA	NA	NA	NA
AUS56813.1\|582459_583059_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.2e-38	42.6
AUS56814.1\|583230_583566_-	metallophosphoesterase	NA	NA	NA	NA
AUS56815.1\|583683_585792_-	S9 family peptidase	NA	NA	NA	NA
AUS56816.1\|586215_586410_+	hypothetical protein	NA	NA	NA	NA
AUS56817.1\|586364_586793_+	transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	1.0e-20	47.6
AUS56818.1\|587000_587312_-	cytoplasmic protein	NA	NA	NA	NA
AUS56819.1\|587492_587948_+	hypothetical protein	NA	NA	NA	NA
AUS58245.1\|587944_588739_+	hypothetical protein	NA	NA	NA	NA
AUS56820.1\|588849_590166_+	amidase	NA	NA	NA	NA
AUS56821.1\|590206_590632_-	cysteine desulfuration protein SufE	NA	NA	NA	NA
AUS56822.1\|590711_591161_-	hypothetical protein	NA	NA	NA	NA
AUS56823.1\|591451_593281_+	sensor histidine kinase	W8CYF6	Bacillus_phage	4.7e-22	28.9
AUS56824.1\|593255_594224_+	peptidoglycan-binding protein	NA	NA	NA	NA
AUS56825.1\|594237_594585_+	DUF1491 domain-containing protein	NA	NA	NA	NA
AUS56826.1\|594595_595672_-	DUF2336 domain-containing protein	NA	NA	NA	NA
AUS56827.1\|595869_596412_-	hypothetical protein	NA	NA	NA	NA
AUS56828.1\|596404_597016_-	DUF1214 domain-containing protein	NA	NA	NA	NA
AUS56829.1\|597022_599197_-	penicillin-binding protein 1A	NA	NA	NA	NA
AUS56830.1\|599536_600049_+	hypothetical protein	NA	NA	NA	NA
AUS56831.1\|599987_601235_+	ATP-binding protein	A0A1V0DY66	Dinoroseobacter_phage	1.9e-70	40.2
AUS56832.1\|601266_602460_+\|portal	phage portal protein	W8ECU7	Geobacillus_phage	7.0e-67	40.0
AUS56833.1\|602456_602834_+	hypothetical protein	NA	NA	NA	NA
AUS56834.1\|602820_603489_+\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	1.7e-30	41.1
AUS56835.1\|603510_604785_+\|capsid	phage major capsid protein	Q8HAD2	Salmonella_phage	2.8e-82	43.6
AUS56836.1\|604949_605516_+	hypothetical protein	NA	NA	NA	NA
AUS56837.1\|605512_605851_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AUS56838.1\|605973_606381_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AUS56839.1\|606421_606835_+\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
AUS56840.1\|606831_607173_+	gene transfer agent family protein	NA	NA	NA	NA
AUS56841.1\|607216_607387_+\|tail	phage tail assembly chaperone	NA	NA	NA	NA
AUS56842.1\|607391_607937_+\|tail	phage tail protein	A0A0S2SYD9	Pseudomonas_phage	2.8e-07	46.4
AUS56843.1\|607939_608572_+	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	2.9e-48	47.6
AUS56844.1\|609439_609862_+	peptidase P60	NA	NA	NA	NA
AUS56845.1\|613793_614000_+	hypothetical protein	NA	NA	NA	NA
AUS58246.1\|614161_614458_+	hypothetical protein	NA	NA	NA	NA
AUS56846.1\|614536_615226_+	DNA-binding response regulator	NA	NA	NA	NA
AUS56847.1\|615300_616611_+	ATP-binding protein	NA	NA	NA	NA
AUS56848.1\|616704_617157_+	hypothetical protein	NA	NA	NA	NA
AUS56849.1\|617257_618397_+	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
AUS56850.1\|618393_618891_+	cytochrome c-type biogenesis protein CcmE	NA	NA	NA	NA
AUS56851.1\|618910_620902_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
AUS56852.1\|620898_621375_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
AUS56853.1\|621516_623058_+\|protease	DegP-like serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-28	29.8
AUS56854.1\|623151_623859_+	DNA-binding response regulator	NA	NA	NA	NA
AUS56855.1\|623855_625262_+	sensor histidine kinase	NA	NA	NA	NA
AUS56856.1\|625384_628336_+	bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA	NA	NA	NA
AUS56857.1\|628380_630492_-	hypothetical protein	NA	NA	NA	NA
AUS56858.1\|630762_633114_-	PAS domain-containing sensor histidine kinase	A0A1V0SGX0	Hokovirus	6.3e-27	34.8
AUS56859.1\|633504_636156_-	aminopeptidase N	NA	NA	NA	NA
AUS56860.1\|636381_637341_+	EamA/RhaT family transporter	NA	NA	NA	NA
AUS56861.1\|637345_638602_-	MFS transporter	NA	NA	NA	NA
AUS56862.1\|638763_639636_-	uracil-DNA glycosylase	NA	NA	NA	NA
AUS56863.1\|640024_641716_+	electron transfer flavoprotein-ubiquinone oxidoreductase	NA	NA	NA	NA
AUS56864.1\|641831_642800_-	AP endonuclease	NA	NA	NA	NA
AUS56865.1\|642968_644471_-	AMP nucleosidase	NA	NA	NA	NA
644486:644500	attL	NA	NA	NA	NA
AUS56866.1\|645037_645748_+	thiol:disulfide oxidoreductase	NA	NA	NA	NA
AUS56867.1\|645806_646154_-	DUF2147 domain-containing protein	NA	NA	NA	NA
AUS56868.1\|646150_646384_-	hypothetical protein	NA	NA	NA	NA
AUS56869.1\|646653_646911_+	hypothetical protein	NA	NA	NA	NA
AUS56870.1\|646970_647741_-	YitT family protein	NA	NA	NA	NA
AUS56871.1\|648397_649048_+	antifreeze protein	NA	NA	NA	NA
AUS58247.1\|649092_649467_-	DUF423 domain-containing protein	NA	NA	NA	NA
AUS56872.1\|649484_650618_-	pyridoxal phosphate-dependent aminotransferase	A0A1X7QHI1	Faustovirus	9.1e-16	23.9
AUS56873.1\|650980_651907_-\|integrase	site-specific integrase	A0A076YL28	Mesorhizobium_phage	2.9e-28	36.3
654378:654392	attR	NA	NA	NA	NA

DBSCAN-SWA_2

875887 : 887815

uncultured_Mediterranean_phage(90.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUS57089.1\|875887_876739_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.4e-31	33.5
AUS57090.1\|876731_877457_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.5e-43	45.7
AUS57091.1\|877602_877821_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	1.5e-07	65.1
AUS57092.1\|877931_878513_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
AUS57093.1\|878509_879334_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	9.8e-44	41.1
AUS58261.1\|879410_880694_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.2e-104	47.2
AUS57094.1\|880842_881610_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.0e-39	40.2
AUS57095.1\|881606_882275_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-13	37.8
AUS57096.1\|882419_882605_+	hypothetical protein	NA	NA	NA	NA
AUS57097.1\|882653_883952_+	LysM peptidoglycan-binding domain-containing protein	Q8SBN9	Clostridium_phage	1.0e-18	41.1
AUS57098.1\|884000_884867_-	DUF815 domain-containing protein	NA	NA	NA	NA
AUS57099.1\|885027_885369_+	immunogenic membrane protein YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	9.1e-12	40.2
AUS57100.1\|885487_887815_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	6.2e-51	43.5

DBSCAN-SWA_3

961606 : 966836

Brucella_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUS57165.1\|961606_961777_-	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	3.1e-05	45.1
AUS57166.1\|961775_962009_+	hypothetical protein	NA	NA	NA	NA
AUS57167.1\|962124_962439_-	hypothetical protein	K4NZP3	Burkholderia_phage	6.9e-06	43.4
AUS57168.1\|962438_962684_-	hypothetical protein	NA	NA	NA	NA
AUS57169.1\|963524_964281_+\|transposase	IS5/IS1182 family transposase	A0A0N9SJT9	Paenibacillus_phage	4.7e-16	41.0
AUS57170.1\|964282_964576_+	hypothetical protein	A0A141GEY5	Brucella_phage	3.5e-28	100.0
AUS57171.1\|964621_965056_+	hypothetical protein	A0A141GEY5	Brucella_phage	4.8e-74	96.5
AUS58269.1\|965384_966836_+	hypothetical protein	A0A141GEY6	Brucella_phage	1.3e-136	57.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025744

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP025743

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection