CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026124	Achromobacter sp. AONIH1 chromosome, complete genome	0 crisprs	cas1,cas4,cas7,cas8c,cas5,cas3,PD-DExK,csa3,cas6f,cas7f,cas5f,cas8f,cas3-cas2,DEDDh,DinG,RT,WYL	0	0	6	1

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

290445 : 346375

Burkholderia_phage(15.79%)

tail,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT44718.1\|290445_291315_+\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
AUT44719.1\|291314_292256_+	prolyl aminopeptidase	NA	NA	NA	NA
AUT44720.1\|292266_292467_+	thiamine biosynthesis protein ThiS	NA	NA	NA	NA
AUT44721.1\|292467_293844_+	hypothetical protein	NA	NA	NA	NA
AUT44722.1\|294124_294571_+	peptidoglycan-binding protein LysM	G3MBQ1	Bacillus_virus	1.2e-06	53.6
AUT44723.1\|294709_296116_-	signal recognition particle protein	NA	NA	NA	NA
AUT49923.1\|296327_297077_+	hypothetical protein	NA	NA	NA	NA
AUT44724.1\|297073_297340_+	hypothetical protein	NA	NA	NA	NA
AUT44725.1\|297524_298103_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A1W6DX33	Sphingobium_phage	2.3e-07	31.8
AUT44726.1\|298132_298753_+	glutathione S-transferase	NA	NA	NA	NA
AUT44727.1\|298703_299546_-	transcriptional regulator	NA	NA	NA	NA
AUT44728.1\|299835_300840_+	2-dehydro-3-deoxygalactonokinase	NA	NA	NA	NA
AUT44729.1\|300850_301504_+	2-dehydro-3-deoxy-6-phosphogalactonate aldolase	NA	NA	NA	NA
AUT44730.1\|301500_302649_+	galactonate dehydratase	Q6A202	Oenococcus_phage	1.5e-58	37.2
AUT44731.1\|302681_304076_+	MFS transporter	NA	NA	NA	NA
AUT44732.1\|304245_305442_-	MFS transporter	NA	NA	NA	NA
AUT44733.1\|308818_309109_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
AUT44734.1\|309118_310162_-	subtype I-C CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
AUT44735.1\|310146_310803_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
AUT44736.1\|310830_311712_-	type I-C CRISPR-associated protein Cas7/Csd2	NA	NA	NA	NA
AUT44737.1\|311708_313526_-	type I-C CRISPR-associated protein Cas8c/Csd1	NA	NA	NA	NA
AUT44738.1\|313522_314197_-	type I-C CRISPR-associated protein Cas5	NA	NA	NA	NA
AUT44739.1\|314246_316502_-	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
AUT44740.1\|316681_318580_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.0e-116	37.0
AUT44741.1\|318768_319149_-	hypothetical protein	NA	NA	NA	NA
AUT44742.1\|319163_320573_-	hypothetical protein	NA	NA	NA	NA
AUT44743.1\|320767_322159_+	xanthine permease XanP	H9YQ34	environmental_Halophage	8.3e-27	50.0
AUT44744.1\|322918_323218_-	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-19	59.1
AUT44745.1\|323207_323456_-	plasmid stabilization protein	NA	NA	NA	NA
AUT44746.1\|324078_324360_+	hypothetical protein	A0A0P0ZE17	Stx2-converting_phage	5.0e-08	29.0
AUT44747.1\|324347_324797_+	transcriptional regulator	NA	NA	NA	NA
AUT44748.1\|324943_325960_+	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	2.0e-67	39.6
AUT44749.1\|326141_326423_+	peptidylprolyl isomerase	NA	NA	NA	NA
AUT44750.1\|326490_327135_-	TetR family transcriptional regulator	NA	NA	NA	NA
AUT44751.1\|327357_329136_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.5e-36	28.9
AUT44752.1\|329129_330893_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.2e-28	26.6
AUT44753.1\|330892_331834_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.7e-53	35.5
AUT44754.1\|331830_332781_+	iron ABC transporter permease	NA	NA	NA	NA
AUT44755.1\|332777_333548_+	siderophore ABC transporter ATP-binding protein	W5SAS9	Pithovirus	2.9e-13	28.4
AUT44756.1\|333544_334522_+	ferric anguibactin-binding protein	NA	NA	NA	NA
AUT44757.1\|334614_336852_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUT44758.1\|336900_337509_-\|tail	phage tail protein	A4JX15	Burkholderia_virus	2.1e-43	49.3
AUT44759.1\|337574_337799_-	hypothetical protein	NA	NA	NA	NA
AUT44760.1\|337782_338151_-	hypothetical protein	NA	NA	NA	NA
AUT44761.1\|341734_342340_-\|tail	phage tail protein	C7BGD3	Burkholderia_phage	1.4e-50	56.0
AUT44762.1\|342336_343116_-	hydrolase Nlp/P60	Q3HQU3	Burkholderia_phage	3.0e-66	49.0
AUT44763.1\|343117_343846_-\|tail	phage minor tail protein L	Q6JIL5	Burkholderia_virus	2.4e-70	57.4
AUT44764.1\|343910_344255_-\|tail	phage tail protein	NA	NA	NA	NA
AUT49924.1\|344251_345511_-\|tail	phage tail tape measure protein	Q9MCS3	Enterobacteria_phage	1.8e-09	24.0
AUT44765.1\|345608_345899_-\|tail	phage tail protein	A0A1B5FP87	Escherichia_phage	1.2e-12	42.7
AUT44766.1\|345898_346375_-\|tail	phage tail protein	C7BGC7	Burkholderia_phage	8.8e-21	42.8

DBSCAN-SWA_2

3046615 : 3089385

Salmonella_phage(15.0%)

head,portal,capsid,integrase,terminase,plate,tail

attL 3034843:3034861|attR 3059189:3059207

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3034843:3034861	attL	NA	NA	NA	NA
AUT46968.1\|3046615_3047878_-\|integrase	integrase	I6PDJ1	Cronobacter_phage	1.0e-63	38.7
AUT46969.1\|3047835_3048069_-	excisionase	NA	NA	NA	NA
AUT46970.1\|3048338_3048569_-	hypothetical protein	NA	NA	NA	NA
AUT46971.1\|3048561_3048816_-	hypothetical protein	NA	NA	NA	NA
AUT46972.1\|3048812_3049094_-	hypothetical protein	NA	NA	NA	NA
AUT46973.1\|3049083_3049770_-	hypothetical protein	NA	NA	NA	NA
AUT50096.1\|3049771_3050005_-	hypothetical protein	NA	NA	NA	NA
AUT46974.1\|3050342_3050621_-	hypothetical protein	NA	NA	NA	NA
AUT46975.1\|3051201_3051456_-	hypothetical protein	NA	NA	NA	NA
AUT46976.1\|3051452_3052283_-	hypothetical protein	Q8W6P2	Burkholderia_virus	2.3e-61	51.9
AUT46977.1\|3052334_3052694_-	hypothetical protein	NA	NA	NA	NA
AUT46978.1\|3053228_3054323_-	reverse transcriptase	A0A0N7AE80	Bacillus_phage	8.1e-46	35.2
AUT46979.1\|3054582_3054969_-	four helix bundle protein	NA	NA	NA	NA
AUT46980.1\|3054997_3055411_-	hypothetical protein	NA	NA	NA	NA
AUT46981.1\|3055453_3056428_-	hypothetical protein	A0A0A0YR68	Pseudomonas_phage	3.1e-20	42.6
AUT46982.1\|3057655_3058390_-	LexA family transcriptional repressor	A0A0R6PHL1	Moraxella_phage	5.9e-08	25.9
AUT46983.1\|3058380_3058626_+	transcriptional regulator	NA	NA	NA	NA
AUT46984.1\|3058895_3059273_+	hypothetical protein	NA	NA	NA	NA
3059189:3059207	attR	NA	NA	NA	NA
AUT46985.1\|3059269_3059449_+	hypothetical protein	NA	NA	NA	NA
AUT46986.1\|3059533_3059758_+	hypothetical protein	NA	NA	NA	NA
AUT46987.1\|3059774_3060077_+	hypothetical protein	NA	NA	NA	NA
AUT46988.1\|3060070_3060568_+	DUF1364 domain-containing protein	NA	NA	NA	NA
AUT46989.1\|3060564_3061755_+	hypothetical protein	K7PGT1	Enterobacteria_phage	2.2e-12	41.1
AUT46990.1\|3061685_3063146_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	8.0e-73	38.9
AUT46991.1\|3063145_3063337_+	hypothetical protein	NA	NA	NA	NA
AUT46992.1\|3063342_3063753_+	hypothetical protein	NA	NA	NA	NA
AUT46993.1\|3063752_3064121_+	hypothetical protein	NA	NA	NA	NA
AUT46994.1\|3064104_3064353_+	hypothetical protein	NA	NA	NA	NA
AUT46995.1\|3064588_3064957_+	hypothetical protein	NA	NA	NA	NA
AUT46996.1\|3064956_3065199_+	hypothetical protein	NA	NA	NA	NA
AUT46997.1\|3065622_3065871_+	hypothetical protein	NA	NA	NA	NA
AUT46998.1\|3065787_3066051_-	DUF1883 domain-containing protein	NA	NA	NA	NA
AUT46999.1\|3066238_3066484_+	hypothetical protein	NA	NA	NA	NA
AUT47000.1\|3066585_3067332_+	hypothetical protein	A0A291AUL1	Sinorhizobium_phage	3.5e-24	35.9
AUT50097.1\|3067713_3068337_+	hypothetical protein	NA	NA	NA	NA
AUT47001.1\|3068278_3070429_+\|terminase	terminase	A0A2K9V3X4	Faecalibacterium_phage	5.3e-97	35.4
AUT47002.1\|3070454_3070703_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
AUT47003.1\|3070699_3072370_+\|portal	phage portal protein	A0A291AUL8	Sinorhizobium_phage	6.3e-90	34.9
AUT47004.1\|3072369_3073248_+	serine peptidase	E4WL22	Enterobacteria_phage	7.2e-53	41.0
AUT47005.1\|3073290_3073929_+	hypothetical protein	NA	NA	NA	NA
AUT47006.1\|3073969_3074644_+	hypothetical protein	NA	NA	NA	NA
AUT47007.1\|3074729_3075785_+\|capsid	capsid protein	V5Q8G6	Xylella_phage	1.5e-44	32.6
AUT47008.1\|3075784_3076096_+	hypothetical protein	NA	NA	NA	NA
AUT47009.1\|3076107_3076431_+	hypothetical protein	NA	NA	NA	NA
AUT47010.1\|3076427_3076982_+	hypothetical protein	NA	NA	NA	NA
AUT47011.1\|3076991_3077204_+	DUF2635 domain-containing protein	NA	NA	NA	NA
AUT47012.1\|3077203_3078697_+\|tail	phage tail protein	B5TK67	Pseudomonas_phage	1.4e-93	41.3
AUT47013.1\|3078759_3079128_+\|tail	phage tail protein	NA	NA	NA	NA
AUT47014.1\|3079157_3079442_+\|tail	phage tail assembly protein	NA	NA	NA	NA
AUT47015.1\|3079547_3081512_+	hypothetical protein	A0A2D2W521	Ralstonia_phage	1.7e-14	44.0
AUT47016.1\|3081521_3082964_+	hypothetical protein	NA	NA	NA	NA
AUT47017.1\|3082993_3084088_+	Mu P family protein	Q8HAC0	Salmonella_phage	3.9e-32	30.5
AUT47018.1\|3084084_3084690_+\|plate	baseplate assembly protein	A0A077KAY0	Edwardsiella_phage	2.0e-06	32.3
AUT47019.1\|3084692_3085160_+	hypothetical protein	A0A2P9JZK5	Alteromonadaceae_phage	2.0e-17	31.7
AUT47020.1\|3085159_3086308_+\|plate	phage baseplate protein	A0A192Y6E4	Salmonella_phage	7.3e-29	32.8
AUT47021.1\|3086319_3086913_+\|tail	phage tail protein	NA	NA	NA	NA
AUT47022.1\|3087778_3088264_+\|tail	phage tail protein	U5P083	Shigella_phage	6.0e-17	37.3
AUT47023.1\|3088305_3088617_+	hypothetical protein	NA	NA	NA	NA
AUT47024.1\|3088618_3088897_+	hypothetical protein	NA	NA	NA	NA
AUT47025.1\|3088893_3089385_+	hypothetical protein	I6NSS1	Burkholderia_phage	3.2e-42	59.3

DBSCAN-SWA_3

3308662 : 3326056

Burkholderia_phage(37.5%)

integrase,tail

attL 3312837:3312852|attR 3325775:3325790

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT47214.1\|3308662_3309607_+	hypothetical protein	A0A1W6JNY0	Morganella_phage	6.9e-09	33.9
AUT47215.1\|3309593_3310352_+	DNA replication protein DnaC	A0A059WFK9	Vibrio_phage	5.4e-57	47.4
AUT47216.1\|3310397_3310814_+	hypothetical protein	NA	NA	NA	NA
AUT47217.1\|3310810_3311068_+	hypothetical protein	NA	NA	NA	NA
AUT47218.1\|3311787_3312381_+	hypothetical protein	A9YX29	Burkholderia_phage	2.4e-44	48.6
AUT47219.1\|3312394_3313867_+	hypothetical protein	A0A0P0I492	Acinetobacter_phage	3.3e-111	47.3
3312837:3312852	attL	NA	NA	NA	NA
AUT47220.1\|3313882_3314323_+	DUF3277 domain-containing protein	A0A0P0IKY2	Acinetobacter_phage	4.7e-37	55.5
AUT47221.1\|3314333_3314783_+	hypothetical protein	A0A0N7IRF3	Acinetobacter_phage	1.5e-17	35.8
AUT50113.1\|3314779_3314968_+	hypothetical protein	NA	NA	NA	NA
AUT47222.1\|3315026_3316760_+\|tail	phage tail protein	NA	NA	NA	NA
AUT47223.1\|3316756_3317356_+	hypothetical protein	NA	NA	NA	NA
AUT47224.1\|3317365_3317665_+	hypothetical protein	A0A0M4R5B7	Salmonella_phage	1.0e-11	41.1
AUT50114.1\|3317684_3318713_+	hypothetical protein	A9YX04	Burkholderia_phage	1.8e-79	53.0
AUT47225.1\|3318750_3319494_+	hypothetical protein	A9YX06	Burkholderia_phage	1.5e-83	63.5
AUT47226.1\|3319502_3319856_+	hypothetical protein	A9YX11	Burkholderia_phage	3.9e-34	62.4
AUT47227.1\|3319852_3321037_+	hypothetical protein	A9YX12	Burkholderia_phage	9.5e-133	64.1
AUT47228.1\|3321042_3321708_+	DUF2612 domain-containing protein	A9YX13	Burkholderia_phage	4.7e-73	59.3
AUT47229.1\|3321737_3322706_+	hypothetical protein	A0A0A8J8U5	Ralstonia_phage	1.4e-36	38.7
AUT47230.1\|3323500_3323857_+\|tail	phage tail protein	NA	NA	NA	NA
AUT47231.1\|3323915_3324938_-\|integrase	integrase	A0A2H4JE37	uncultured_Caudovirales_phage	2.4e-23	31.9
AUT47232.1\|3325116_3325578_+	hypothetical protein	A0A0U5LBV3	unidentified_phage	2.2e-13	35.8
AUT47233.1\|3325567_3326056_+	hypothetical protein	A0A2H4JFP9	uncultured_Caudovirales_phage	1.2e-46	62.4
3325775:3325790	attR	NA	NA	NA	NA

DBSCAN-SWA_4

4644935 : 4653206

uncultured_Mediterranean_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT48296.1\|4644935_4645814_-	peptidase	A0A292GJG6	Xanthomonas_phage	6.0e-15	41.3
AUT50228.1\|4645831_4646470_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.8e-30	45.1
AUT48297.1\|4646637_4647396_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.6e-69	52.5
AUT48298.1\|4647576_4648221_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AUT48299.1\|4648244_4649279_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.8e-93	52.3
AUT48300.1\|4649392_4650688_+	guanine permease	A0A0R6PHV4	Moraxella_phage	1.0e-63	36.5
AUT48301.1\|4650995_4652018_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AUT48302.1\|4652189_4652564_+	thiol reductase thioredoxin	V9SJ74	Achromobacter_phage	2.5e-10	27.8
AUT48303.1\|4652618_4653206_-	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	9.2e-20	40.9

DBSCAN-SWA_5

5825185 : 5834590

Acidovorax_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT49237.1\|5825185_5826085_+	recombination-associated protein RdgC	A0A218M310	Acidovorax_phage	1.0e-57	40.5
AUT49238.1\|5826081_5826393_-	hypothetical protein	NA	NA	NA	NA
AUT49239.1\|5826446_5827397_+	hypothetical protein	A0A0U4JP11	Pseudomonas_phage	5.2e-41	42.2
AUT49240.1\|5827393_5827600_+	hypothetical protein	NA	NA	NA	NA
AUT49241.1\|5827596_5827962_+	hypothetical protein	H2BDF1	Pseudomonas_virus	3.8e-08	47.1
AUT49242.1\|5827961_5828492_+	hypothetical protein	A0A248SL53	Klebsiella_phage	2.3e-17	40.9
AUT49243.1\|5828503_5828761_+	hypothetical protein	NA	NA	NA	NA
AUT49244.1\|5828882_5829125_+	hypothetical protein	NA	NA	NA	NA
AUT49245.1\|5829446_5830031_+	hypothetical protein	A0A291L9X3	Bordetella_phage	2.5e-17	57.6
AUT49246.1\|5830213_5830462_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AUT49247.1\|5830458_5831748_-	DUF4102 domain-containing protein	C7BGE7	Burkholderia_phage	9.4e-134	55.5
AUT50322.1\|5831989_5834590_+	DNA mismatch repair protein MutS	A0A1V0SDQ0	Indivirus	2.7e-23	20.8

DBSCAN-SWA_6

5941211 : 5947964

Cedratvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT49330.1\|5941211_5941991_+	ABC transporter ATP-binding protein	A0A285PWH2	Cedratvirus	1.6e-11	27.9
AUT49331.1\|5941987_5942698_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.1e-06	23.9
AUT49332.1\|5942818_5943196_+	transcriptional regulator	NA	NA	NA	NA
AUT49333.1\|5943216_5943939_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	2.0e-85	66.1
AUT50332.1\|5944247_5946527_+	ribonucleoside-diphosphate reductase subunit alpha	I3UMG3	Colwellia_phage	1.1e-297	65.1
AUT49334.1\|5946543_5947677_+	ribonucleotide-diphosphate reductase subunit beta	W6AT53	Erwinia_phage	2.2e-155	70.0
AUT49335.1\|5947673_5947964_+	[Fe-S]-binding protein	G9IAA2	Pseudomonas_phage	4.1e-13	50.8

Anti-CRISPR protein detection

Acr_ID: CP026124.1|AUT47029.1|3091487_3091955_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP026124.1|AUT47029.1|3091487_3091955_-|hypothetical-protein

3091487_3091955_-

155 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|33	0.5231788079470199	0.9806451612903225	0.993421052631579