CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP026112	Paraburkholderia terrae strain DSM 17804 chromosome 2, complete sequence	4 crisprs	csa3,DinG,cas3,WYL	2	4	1
CP026114	Paraburkholderia terrae strain DSM 17804 chromosome 4, complete sequence	2 crisprs	PD-DExK	0	0	0
CP026111	Paraburkholderia terrae strain DSM 17804 chromosome 1, complete sequence	2 crisprs	DEDDh,csa3,DinG,cas3,WYL	0	2	2
CP026113	Paraburkholderia terrae strain DSM 17804 chromosome 3, complete sequence	3 crisprs	csa3,WYL	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026112_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026112_1

1103867-1103946

Orphan

Consensus_repeat	Method
TTTTGCGCTGGCATCCGCGATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026112_1

>merge|CP026112|1|1103867-1103946|CRISPRCasFinder
TTTTGCGCTGGCATCCGCGATTTGCCTTCGTGGCGCGGGCGGTTTGGTTTTTATGGGTTTTCGCTGGCATCCGCGATTTG

>CP026112|1|1|1103867-1103946|CRISPRCasFinder
TTTTGCGCTGGCATCCGCGATTTG	CCTTCGTGGCGCGGGCGGTTTGGTTTTTATGG
GTTTTCGCTGGCATCCGCGATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP026112.1\|AUT62163.1\|1105621_1106629_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368491
CP026112.1\|AUT62165.1\|1107778_1109263_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
CP026112.1\|AUT63776.1\|1111845_1113234_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
CP026112.1\|AUT62154.1\|1093879_1094461_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
CP026112.1\|AUT62156.1\|1095891_1097565_+\|nuclease	unknown	unknown	gnl\|CDD\|372629
CP026112.1\|AUT62161.1\|1102491_1103832_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026112.1\|AUT63777.1\|1114529_1114829_+\|sarcosine-oxidase-subunit-delta	unknown	unknown	gnl\|CDD\|377276
CP026112.1\|AUT62166.1\|1109419_1109755_-\|phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|226924
CP026112.1\|AUT62167.1\|1109823_1110192_-\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62157.1\|1097628_1098576_-\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|206754
CP026112.1\|AUT62155.1\|1094480_1095107_-\|thiol:disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|183298
CP026112.1\|AUT62162.1\|1104687_1105425_-\|FadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225097
CP026112.1\|AUT62153.1\|1093383_1093848_+\|response-regulator	unknown	unknown	gnl\|CDD\|381118
CP026112.1\|AUT62158.1\|1098776_1099325_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|226429
CP026112.1\|AUT62164.1\|1106651_1107569_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|235996
CP026112.1\|AUT62159.1\|1099345_1101148_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|274362
CP026112.1\|AUT63775.1\|1095109_1095736_-\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|198289
CP026112.1\|AUT62168.1\|1110388_1111474_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP026112.1\|AUT62169.1\|1113262_1114507_+\|sarcosine-oxidase-subunit-beta-family-protein	unknown	unknown	gnl\|CDD\|273585
CP026112.1\|AUT62160.1\|1101176_1102031_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|285830

Protein	Function_ID	Function_description	E-value
CP026112.1\|AUT62163.1\|1105621_1106629_+\|hypothetical-protein	gnl\|CDD\|368491	pfam05544, Pro_racemase, Proline racemase. This family consists of proline racemase (EC 5.1.1.4) proteins which catalyze the interconversion of L- and D-proline in bacteria. This family also contains several similar eukaryotic proteins including Trypanosoma cruzi PA45-A, a protein with B-cell mitogenic properties which has been characterized as a co-factor-independent proline racemase.	4.61235e-122
CP026112.1\|AUT62165.1\|1107778_1109263_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
CP026112.1\|AUT63776.1\|1111845_1113234_+\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
CP026112.1\|AUT62154.1\|1093879_1094461_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	8.44698e-35
CP026112.1\|AUT62156.1\|1095891_1097565_+\|nuclease	gnl\|CDD\|372629	pfam13538, UvrD_C_2, UvrD-like helicase C-terminal domain. This domain is found at the C-terminus of a wide variety of helicase enzymes. This domain has a AAA-like structural fold.	2.86412e-09
CP026112.1\|AUT62161.1\|1102491_1103832_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.92943e-70
CP026112.1\|AUT63777.1\|1114529_1114829_+\|sarcosine-oxidase-subunit-delta	gnl\|CDD\|377276	pfam04267, SoxD, Sarcosine oxidase, delta subunit family. Sarcosine oxidase is a hetero-tetrameric enzyme that contains both covalently bound FMN and non-covalently bound FAD and NAD(+). This enzyme catalyzes the oxidative demethylation of sarcosine to yield glycine, H2O2, and 5,10-CH2-tetrahydrofolate (H4folate) in a reaction requiring H4folate and O2.	2.64106e-48
CP026112.1\|AUT62166.1\|1109419_1109755_-\|phosphotyrosine-protein-phosphatase	gnl\|CDD\|226924	COG4551, COG4551, Predicted protein tyrosine phosphatase [General function prediction only].	1.94172e-53
CP026112.1\|AUT62157.1\|1097628_1098576_-\|phosphoribosyltransferase	gnl\|CDD\|206754	cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I domain. Phosphoribosyl transferase (PRT) domain. The type I PRTases are identified by a conserved PRPP binding motif which features two adjacent acidic residues surrounded by one or more hydrophobic residue. PRTases catalyze the displacement of the alpha-1'-pyrophosphate of 5-phosphoribosyl-alpha1-pyrophosphate (PRPP) by a nitrogen-containing nucleophile. The reaction products are an alpha-1 substituted ribose-5'-phosphate and a free pyrophosphate (PP). PRPP, an activated form of ribose-5-phosphate, is a key metabolite connecting nucleotide synthesis and salvage pathways. The type I PRTase family includes a range of diverse phosphoribosyl transferase enzymes and regulatory proteins of the nucleotide synthesis and salvage pathways, including adenine phosphoribosyltransferase EC:2.4.2.7., hypoxanthine-guanine-xanthine phosphoribosyltransferase, hypoxanthine phosphoribosyltransferase EC:2.4.2.8., ribose-phosphate pyrophosphokinase EC:2.7.6.1., amidophosphoribosyltransferase EC:2.4.2.14., orotate phosphoribosyltransferase EC:2.4.2.10., uracil phosphoribosyltransferase EC:2.4.2.9., and xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.	1.11456e-08
CP026112.1\|AUT62155.1\|1094480_1095107_-\|thiol:disulfide-oxidoreductase	gnl\|CDD\|183298	PRK11752, PRK11752, putative S-transferase; Provisional.	3.62187e-62
CP026112.1\|AUT62162.1\|1104687_1105425_-\|FadR-family-transcriptional-regulator	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	2.0013e-38
CP026112.1\|AUT62153.1\|1093383_1093848_+\|response-regulator	gnl\|CDD\|381118	cd17580, REC_2_DhkD-like, second phosphoacceptor receiver (REC) domain of Dictyostelium discoideum hybrid signal transduction histidine kinase D and similar domains. Dictyostelium discoideum hybrid signal transduction histidine kinase D (DhkD) is a large protein that contains two histidine kinase (HK) and two REC domains on the intracellular side of a single pass transmembrane domain, and extracellular PAS and PAC domains that likely are involved in ligand binding. This model represents the second REC domain and similar domains. DhkD activates the cAMP phosphodiesterase RegA to ensure proper prestalk and prespore patterning, tip formation, and the vertical elongation of the mound into a finger, in Dictyostelium discoideum. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.1114e-29
CP026112.1\|AUT62158.1\|1098776_1099325_+\|oxidoreductase	gnl\|CDD\|226429	COG3915, COG3915, Uncharacterized protein conserved in bacteria [Function unknown].	2.40454e-24
CP026112.1\|AUT62164.1\|1106651_1107569_+\|ornithine-cyclodeaminase	gnl\|CDD\|235996	PRK07340, PRK07340, delta(1)-pyrroline-2-carboxylate reductase family protein.	1.6633e-132
CP026112.1\|AUT62159.1\|1099345_1101148_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	5.28513e-59
CP026112.1\|AUT63775.1\|1095109_1095736_-\|glutathione-S-transferase	gnl\|CDD\|198289	cd03180, GST_C_2, C-terminal, alpha helical domain of an unknown subfamily 2 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.	1.82737e-47
CP026112.1\|AUT62168.1\|1110388_1111474_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	5.4893e-123
CP026112.1\|AUT62169.1\|1113262_1114507_+\|sarcosine-oxidase-subunit-beta-family-protein	gnl\|CDD\|273585	TIGR01373, Sarcosine_oxidase_subunit_beta, sarcosine oxidase, beta subunit family, heterotetrameric form. This model describes the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. [Energy metabolism, Amino acids and amines].	0
CP026112.1\|AUT62160.1\|1101176_1102031_-\|hypothetical-protein	gnl\|CDD\|285830	pfam08667, BetR, BetR domain. This family includes an N-terminal helix-turn-helix domain.	2.28044e-58

>CP026112.1|AUT62161.1|1102491_1103832_+|FAD-binding-oxidoreductase
MTTTYPLHANLSPADTPFPDQADVVIAGAGIMGCAAAYYLARRGVKAVVVDKSRIAGQQSTRAWGFVRQQGREAAEVPLMMAGMRIWEQLERELDFDLEWRQGGCLYVADKEEDWASFQQWMDVAKQYGLDTRVLDRAQIDQHVRGMQGKVLGGLYTPTDGQAEPRRAAAAFAARAIEAGARFFEGCGVVAIERAAGAVTGVVTERGTIRTRQVICAAGASSWRLLDTLGIVLPQQAVRGTCMRTNPLPAITASTFWGHGLGIRQRANGAINLADDMQVDVDMTFGHFRALKWFLPELWAQREKFSFHLNGAFVRDLRERVPGFLSADERVLHPRDPNPQPNRAHAPRALQKLRALFPALKDAQVVESWAGLIDVLPDGIPVLDAASQAQGLLVATGFCGHGFAMGPIVGRLMAEWIVDGQPSIDLSAFRLQRFFDGTMQRPRSML
>CP026112.1|AUT62160.1|1101176_1102031_-|hypothetical-protein
MSNEATSTDSLAVAERVRELMSRHGIGKRQQTSELCRILDLSFSQGHRKLRGNSPWTLSQIKKVAEVFGEPAAQLFGAQSLDPGMVGATAQEAVFAIGGIELACTAWIGAPIEAGSRPEFIAWSKLDQWRVVRHDGALYQNAYEVHKIEIYPRRAETDKPLIAVVDDDQASADNLRDYLERSGFAAIAIYGLAAFAETLQTQVFDGVVIDWLFGPQTSAEAIRAVRASENPDAPIFVLTGELLTGKASESEISDIVRNYDVACYEKPARMAILVADLSKRLSRA
>CP026112.1|AUT62159.1|1099345_1101148_+|hybrid-sensor-histidine-kinase/response-regulator
MVLVIIWIAALAAPTAAISYLLYSALLNPRATQQLTGTYDGFYWDAAQLQIAYARLESQLLQYETGVDSDYQRLTLHFQVLQSKLRVMAGSTQRMAAQTEAVQRQQEEIVRLSEMLVAMQPSLDALPASPALASQMVDELRKHWKEVNDLALSRRYVDLQDREAMNSDFIAKRRMLFAGGLVLLLLSAAATTLLVMNGRRRTRLIVQQRAALDAEHQASRAAREASLAKDAFLGMISHELRTPLHAIVSSIELLGFNFHSDADRKVIQRLETAARHLEAQMKDLTDYARLGAGKLELRNEHFDPRELLTSIVDEHEPFARAKGLVFEGSASGRVGLVDSDPHRIRQIVNNLVTNGIRYTERGTVTLHFDQRDDALAIVVTDTGAGVPDKQIPLIFKEFTQLDASRTRRFEGAGMGLAIVQGLVDLFGGTIDVDSEVGKGTRFTVTIPVKPVATPTDASVVPHTAHGEGRPQVLIVDDNQLIRESLCEMLEHMGCDASAVANADDAHAWLAARQCDLVLLDLHMPDKDGYAFMTEYTEKAERSGEAVRTPVIAVSAYAPDGSVRAEADLFFDSLTKPVHYEVLRDAVQRALAARHGASVAG
>CP026112.1|AUT62158.1|1098776_1099325_+|oxidoreductase
MLYKKCGGLRASALMSALVTALFTVFALAFASFGASAAPLTTTLALDVKGKIAKTNDDDHTVFHFSEAQLLALPVHSISTSTTWTAKSTFTGPLLADILKTVGAYGDQIEIHTLDDYTYTVPVSDTSRYGVIVAYSMNGKRLQVSDFGPLFLIYPRDQFPGELAGASADAKFVWQIKALIVK
>CP026112.1|AUT62157.1|1097628_1098576_-|phosphoribosyltransferase
MKKPVLPLTYEQLDHWIESLQPTLLEERFAAAVGILRGGAPLALMASHAIGVPVAFLSYDRRARHVTWDSAQPLPAPGSKVLLCEDIAGRGFTLVDCIAFLEQHGLIVKTLTAAFDEISRIRPDFANDASGFFALFPWERQAYTDDYRDDWLKVESGSAGKMADDHEYATYAIDLDGILLPDVPLSRYDEDLAAALNERDALLPYEVLPDVDLQKVRAVITGRPHADLERTRAWLERHGFGHLELVMRTPDAHDETPEGAAAHKAAAALSCGVTHFIESDPVQALLIAKLAPLLRVIWWDALKHTGTLISASAWR
>CP026112.1|AUT62156.1|1095891_1097565_+|nuclease
MARIVPDDWKSLAATGAASRERETLALLEEALPREYTVYHGVHWTRLHEGFSVFGEADFVIVSPAGRVMIVEQKTGFLRETPKGLVKVYMQTERNVAIALARTIEGLHRRFTAAFGAGTYFIEELLYCPDHIVKDAAISGVNPARIVDATRKDQLVSVIREALPEDEPRLPCASKIHHFLADELALAPDASALVGQAGTLVTRLAGGLATWARRLEFAPFRLRVIGTAGSGKTQLAVQVMKDAVARGARPLYVCFNRPLADHIARVAPPEAKVANYHQLCDEIVRDSGRAPDFQSSDVFEQLESAFAGTPIDARFQYDVLIVDEGQDFQQPWVPALERLLKPGGAWWWLEDPLQNLYMRESVALPGWTVLRESTNYRSPRNILDYLRGVVGATVPLAAGLAAGSPFDGSDISLSIYDETQLPESCIDATKRAITQALALGFRKQDIAVLSFRGREGSVLWPLDHLGPHRLRSFTGKYDLFGNPAYREGDVLLDSIYRFKGQSAPCVILSEVDFDAFDERNARKLFVGATRATMKLIVVASQRAARHLQLGDMKEQAG
>CP026112.1|AUT63775.1|1095109_1095736_-|glutathione-S-transferase
MITVWGRANSVNVQKILWVCDELVLPYNRIDAGLQFGRNDEPEYLAINPTGKVPTLVDGDYALWESNSILRYLVMQYGESSVLYPDEPKARASIDRWLDWSLSTLQPAERPVFWAIVRTPEAERDNVKLAADIDNVAKLWKMLDAQLQGRFFIEGEKFTLADIVLGAYAKRWFGLPGVERASLPNLERWYQRLSTRSGFKQYVDFDLT
>CP026112.1|AUT62155.1|1094480_1095107_-|thiol:disulfide-oxidoreductase
MTISLYAWGTPNGRKISVALEEMALPYAVKPINITKDEQFDPDFLAISPNNKIPAIVDPDGPDGKPISVFESGAILLYLGEKTGKFLPQSLRDRVPVLEWLMWQMGGFGPMPGQVHHFAALASEDDKRYGLKRFSTETRRLYKVLDARLAKSEYVAGDLSIADFAILGWAWRHERHKVDLAEFPNVKRWYETLFARPGVKRGFDVKLD
>CP026112.1|AUT62154.1|1093879_1094461_-|transcriptional-repressor
MKNAKPTAADAASTPGHAHHAHAADHAHSHAEDPHHDHAHGTPASAEAALALAEEYCRERGEKLTPIRRKVLELLLTSGRATKAYSLLDDMRQIHPGSAPPTVYRALDFLLSAGLVHKIESINAFAVCHDLTQCQHGILVVCQQCGNVTELHQPALREALVAQIENAGYRLAGDGIELKGLCSACQAAQAAGS
>CP026112.1|AUT62153.1|1093383_1093848_+|response-regulator
MATSECITSFSSHNIKMNGVLRLDQATIVLVEDDPQNRESLKILLESEGANVIAVADAEEGVEAAVRALPDAVVCDLDLPAMDGFYLIQRVRDHEIRGDHSPSVAVALTGHTDEAYRLRSIGEGFQHFMTKPAPPEALVTLLHDAIGARAAGLT
>CP026112.1|AUT62162.1|1104687_1105425_-|FadR-family-transcriptional-regulator
MASTSFALERAFRPKQIYEQVAERMRGDIRNGQFAPEARLPSERDLAARFGVGRPAVREALGALQNEGLVVTRRNSGTYVCADALQRLAAAPASGDVSGDADFSPTSALDVRLILEPAIARRAAANAQRDELAEHYLAQMDSIDDVSDAVQRALWNDSDRLFHLQLAVMTGDALLVKIADEVAKAMDQPLWKRLKDDGIHDPGRIRLYVSEHRLIYEAIVDGDADAAAFYVEQHIRRVRRDIAPK
>CP026112.1|AUT62163.1|1105621_1106629_+|hypothetical-protein
MKLNRMISTVEVHTGGEPFRIVTSGLPKMPGKTIVERRAWLKEHADHLRRALMLEPRGHADMYGGYLTDPVTEGADFGIIFVHNEGYSDHCGHGVIALATTAVSLGWVERTEPETRVGIDAPCGFIEAFVKWDGDHAGSVRFVNVPSFIWQRDVSVETPTFGTVRGDIAFGGAFYFYTSGEPFGLDVRENQVDRLIQFGAEVKRAANEAFKVEHPHIPEINHIYGTIIDNAPRHAGSTQANCCVFADREVDRSPTGSGTAGRVAQLYLRGQLGKDETLINESIIGTVFRGRVLSETKLDRFDAVIPEIEGDAHICGFANWLVDERDPLTYGFLVR
>CP026112.1|AUT62164.1|1106651_1107569_+|ornithine-cyclodeaminase
MSSTPIFDAAGTARLIPFRALVDALKTAAADYAAGRVASPERLFVPLNDNGNMLSMPAAASDLAIHKLVNVCPRNGERALPTIHGQVMAFDPDTGKTLFILDGPTVTGRRTAAMTMLGIETLSRDAPKDILLIGTGTQSASHLRAIGELYPEARVRVRGTSVARAQAFCDAQRGTVRDLQALSEATIPDSVDTVIALTTSRQAVYDEAPRAGRLVIGVGAFTPQMCEIGARTLAGSSLYVDDLAGAKHEAGDFIQAGVDWSTVTGIKDALASQPSFDTAIVFKTVGCAAWDLAAGRVARAALGAG
>CP026112.1|AUT62165.1|1107778_1109263_+|glucose-6-phosphate-dehydrogenase
MTTSTAPASPDRPLDMIIFGGAGDLSARKLLPALYMAHTHGNLPPETRILAIGRREWVRDDYLKWMDEQSRPFIESGAYESGAWDRFLSLFEYVRVNVDQAADYERLAEASRPNALRVFYLSTSPELFTTICDNLSSHGLLDEYSRVVLEKPLGHDLASAQAINDSVGKHFSEHQIYRIDHYLGKETVQNLMVLRFGNAIFGPLWQAPYIRSVQITVAESVGVGTRAGFYDHTGAMRDMVQNHLLQLLCIVAMEPPVSLDADAVRDEKLKVLRSLRPMTAEDISRDTVRGQYTAGAVGGEPVKGYLEEANVPADSRAETFVALRAHINNWRWANVPFYLRTGKRMAKKLSEIVIEFADLPFSIMPNSPCGPRNCGNRLVIQLQPNESIQLQMLAKEPGSGMRTLPVNLNLDLEQAFTSRRAEAYERLLIDVVRGRLTHFMRRDELEAAWTWVDPIIEAWKRNGDKPRGYTAGTFGPGASTAMMARDNMVWSEES
>CP026112.1|AUT62166.1|1109419_1109755_-|phosphotyrosine-protein-phosphatase
MRAALLICSRNRLRSPTAEALFSSWPGVETDSAGLAPDAAMIISMEQVLWADMNFVMERAHKARLSRKFGPSLKSKQIICLDIPDKYTFMQPELIAILERTAGKYLRRNQH
>CP026112.1|AUT62167.1|1109823_1110192_-|hypothetical-protein
MNPRRVHSLFEKHFPKIDLVMCEWIHLFRDGTVDRELLGKILSTIESDCLLIHIRRTIGDFLQSEQALDYIVENVGKSQIRIADRAFNRFVMIASNGVAATWPQCLTRFQFAQLPDKSSGID
>CP026112.1|AUT62168.1|1110388_1111474_-|GlxA-family-transcriptional-regulator
MTIVDSLPLTSIDALPKERIRFGIILLPNFTLTAFSGFVDMLRLSADEGDYSKPVRCSWSVIGDTLAPVRASCGIQITPWKTFADAEPFDYVVVVGGLLHSGPQANDETLQFIRAAARGTTTLVGICTGVFALMRAGVLDEHRICVSWFHYWDFVERFPSVNSDALIADRLFVIDRRRITCSGGRASIDVAAAILLRHFETATVQKALRILLVGEMQKGNAPQPHPPGLEPATHPKVKRAILLMEQHVGRTLPLEELACKLDLSPRQLERLFKAETGKSPQAFAKQVRLRTAAWLLTSSDRTVADIASSCGFSDASHLGREFRKEFGMPPVMFREQRGGTPVEGDAAVAYEETFPGRVDVF
>CP026112.1|AUT63776.1|1111845_1113234_+|L-serine-ammonia-lyase
MNVSVFDLFKIGIGPSSSHTVGPMIAACRFASHIEDANLLAFVRRVKVELYGSLGATGKGHGTDKAVLLGLEGHLPDTINPDLIEPRLVDIRKGKRLSLLGKHEIGFDEKEQIAFFRRLMSGTGSVVHPNGMRFQAFDENGQLLVEKEYYSVGGGFVVNREGDRVNGVRAGGEVPYPFRNGDDLMRVCRESGLSVAQVTFANECASRAPEDVREGLLTIWRTMAACVERGCKMHGELPGPMRVKRRAADLTVQLRTHSEESLRDPLSMLDWVNLYAMAVNEENAAGGRVVTAPTNGAAGVIPAVLHYYVKFVPGSNENGIVDFLLTAAAIGIIYKETASISGAEVGCQGEVGVACSMAAAALAAVMGGTPSQVENAAEIGMEHNLGMTCDPVGGLVQIPCIERNAMGAIKALNASRMALKGDGQHYVTLDNVIKTMRETGADMKTKYKETSRGGLAVNVIEC
>CP026112.1|AUT62169.1|1113262_1114507_+|sarcosine-oxidase-subunit-beta-family-protein
MSRYSIFSLFRNGLSYHENWERQWRSPEPKKEYDVVIVGGGGHGLATAYYLAKEHGVKNVAILEKGWIGGGNTARNTTIVRSNYLWDESAALYEKAMKLWEGLSQDLNYNVMFSQRGVLNLAHTLQDVRDTERRVNANRLNGVDAEFLTPEQIKEIEPTINLNSRYPVLGASIQRRAGVARHDAVAWGFARGADQAGVDIIQNCQVTGIRRDGGRVTGVDTVKGFIKAKKVAVVAAGNTTTLADMAGIRLPLESHPLQALVSEPIKPVVNSVIMSNAVHAYISQSDKGDLVIGAGVDQYTGFGQRGSFHIIEGTLQAIVEMFPVFSRVRMNRQWGGIVDVSPDACPIISKTDVKGLYFNCGWGTGGFKATPGSGWVFAHTIANDEPHPLNAAFSLDRFYTGHLIDEHGAAAVAH
>CP026112.1|AUT63777.1|1114529_1114829_+|sarcosine-oxidase-subunit-delta
MLTIECPWCGPRAESEFSCGGEADIARPLDTDKLTDREWGEYLFMRKNPRGVHREQWMHTQGCRRWFMATRDTVTYQIQGYETFKMGNTSADAQEGKKQ

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Crispr_ID: CP026112_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026112_2

1167095-1167173

Orphan

Consensus_repeat	Method
CAAAACGCGGATGCCAGCGCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026112_2

>merge|CP026112|2|1167095-1167173|CRISPRCasFinder
CAAAACGCGGATGCCAGCGCAAAGGCAAAGAAACCAAACTGGCCGCGCCACGAAGGCATAACGCGGATGCCAGCGCAAA

>CP026112|2|2|1167095-1167173|CRISPRCasFinder
CAAAACGCGGATGCCAGCGCAAA	GGCAAAGAAACCAAACTGGCCGCGCCACGAAGG
CATAACGCGGATGCCAGCGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026112.1\|AUT62203.1\|1157941_1160005_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|240085
CP026112.1\|AUT62200.1\|1154990_1156265_+\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|237280
CP026112.1\|AUT62206.1\|1163105_1163885_+\|drug:proton-antiporter	unknown	unknown	gnl\|CDD\|224997
CP026112.1\|AUT62209.1\|1167317_1168187_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270357
CP026112.1\|AUT62205.1\|1161930_1163109_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP026112.1\|AUT62207.1\|1163926_1165207_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	unknown	unknown	gnl\|CDD\|176893
CP026112.1\|AUT62201.1\|1156308_1157280_+\|membrane-dipeptidase	unknown	unknown	gnl\|CDD\|366534
CP026112.1\|AUT62213.1\|1172138_1173680_+\|choline-sulfatase	unknown	unknown	gnl\|CDD\|274570
CP026112.1\|AUT62217.1\|1177428_1178379_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
CP026112.1\|AUT62214.1\|1173721_1174687_+\|choline-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|188316
CP026112.1\|AUT62204.1\|1160007_1161927_+\|DUF3483-domain-containing-protein	unknown	unknown	gnl\|CDD\|371832
CP026112.1\|AUT62218.1\|1178454_1179384_+\|3-keto-5-aminohexanoate-cleavage-protein	unknown	unknown	gnl\|CDD\|225785
CP026112.1\|AUT62215.1\|1174929_1176072_+\|porin	unknown	unknown	gnl\|CDD\|238208
CP026112.1\|AUT62202.1\|1157311_1157857_+\|4-vinyl-reductase	unknown	unknown	gnl\|CDD\|198057
CP026112.1\|AUT62208.1\|1165259_1166414_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|99811
CP026112.1\|AUT62212.1\|1171070_1171997_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|188320
CP026112.1\|AUT62211.1\|1170041_1170920_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|237266
CP026112.1\|AUT62216.1\|1176133_1177126_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP026112.1\|AUT62210.1\|1168329_1169985_+\|APC-family-permease	unknown	unknown	gnl\|CDD\|372624
CP026112.1\|AUT62199.1\|1153436_1154456_-\|GlxA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311

Protein	Function_ID	Function_description	E-value
CP026112.1\|AUT62203.1\|1157941_1160005_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|240085	cd04734, OYE_like_3_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.	0
CP026112.1\|AUT62200.1\|1154990_1156265_+\|serine-hydroxymethyltransferase	gnl\|CDD\|237280	PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed.	0
CP026112.1\|AUT62206.1\|1163105_1163885_+\|drug:proton-antiporter	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	7.07518e-31
CP026112.1\|AUT62209.1\|1167317_1168187_+\|glycine/betaine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270357	cd13639, PBP2_OpuAC_like, Substrate binding domain of Lactococcus lactis ABC-type transporter OpuA and related proteins; the type 2 periplasmic binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to betaine compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine and proline betaine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.39332e-122
CP026112.1\|AUT62205.1\|1161930_1163109_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.91467e-66
CP026112.1\|AUT62207.1\|1163926_1165207_+\|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha	gnl\|CDD\|176893	cd08884, RHO_alpha_C_GbcA-like, C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components and have an N-terminal domain, which binds a Rieske-like 2Fe-2S cluster, and a C-terminal domain which binds the non-heme Fe(II). The Fe(II) is co-ordinated by conserved His and Asp residues. GbcA is involved in glycine betaine (GB) catabolism in Pseudomonas aeruginosa; it may remove a methyl group from GB via a dioxygenase mechanism, producing dimethylglycine and formaldehyde. This subfamily belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket.	2.11812e-102
CP026112.1\|AUT62201.1\|1156308_1157280_+\|membrane-dipeptidase	gnl\|CDD\|366534	pfam01244, Peptidase_M19, Membrane dipeptidase (Peptidase family M19).	6.02876e-126
CP026112.1\|AUT62213.1\|1172138_1173680_+\|choline-sulfatase	gnl\|CDD\|274570	TIGR03417, chol_sulfatase, choline-sulfatase.	0
CP026112.1\|AUT62217.1\|1177428_1178379_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	3.20746e-179
CP026112.1\|AUT62214.1\|1173721_1174687_+\|choline-ABC-transporter-substrate-binding-protein	gnl\|CDD\|188316	TIGR03414, ABC_choline_bnd, choline ABC transporter, periplasmic binding protein. Partial phylogenetic profiling () vs. the genome property of glycine betaine biosynthesis from choline consistently reveals a member of this ABC transporter periplasmic binding protein as the best match, save for the betaine biosynthesis enzymes themselves. Genomes often carry several paralogs, one encoded together with the permease and ATP-binding components and another encoded next to a choline-sulfatase gene, suggesting that different members of this protein family interact with shared components and give some flexibility in substrate. Of two members from Sinorhizobium meliloti 1021, one designated ChoX has been shown experimentally to bind choline (though not various related compounds such as betaine) and to be required for about 60 % of choline uptake. Members of this protein have an invariant Cys residue near the N-terminus and likely are lipoproteins. [Transport and binding proteins, Amino acids, peptides and amines].	2.9201e-176
CP026112.1\|AUT62204.1\|1160007_1161927_+\|DUF3483-domain-containing-protein	gnl\|CDD\|371832	pfam11982, DUF3483, Domain of unknown function (DUF3483). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 230 amino acids in length. This domain is found associated with pfam02754.	3.92956e-95
CP026112.1\|AUT62218.1\|1178454_1179384_+\|3-keto-5-aminohexanoate-cleavage-protein	gnl\|CDD\|225785	COG3246, COG3246, Uncharacterized conserved protein [Function unknown].	1.65386e-134
CP026112.1\|AUT62215.1\|1174929_1176072_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	1.59056e-89
CP026112.1\|AUT62202.1\|1157311_1157857_+\|4-vinyl-reductase	gnl\|CDD\|198057	smart00989, V4R, The V4R (vinyl 4 reductase) domain is a predicted small molecular binding domain, that may bind to hydrocarbons.	3.93139e-07
CP026112.1\|AUT62208.1\|1165259_1166414_+\|hybrid-cluster-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|99811	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins which act as electron carriers in photosynthesis and ferredoxins which participate in redox chains from bacteria to mammals. Ferredoxin reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.	1.41839e-134
CP026112.1\|AUT62212.1\|1171070_1171997_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|188320	TIGR03418, chol_sulf_TF, putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.	8.12615e-144
CP026112.1\|AUT62211.1\|1170041_1170920_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|237266	PRK13011, PRK13011, formyltetrahydrofolate deformylase; Reviewed.	0
CP026112.1\|AUT62216.1\|1176133_1177126_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	6.64921e-115
CP026112.1\|AUT62210.1\|1168329_1169985_+\|APC-family-permease	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	7.30808e-53
CP026112.1\|AUT62199.1\|1153436_1154456_-\|GlxA-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.73235e-141

>CP026112.1|AUT62208.1|1165259_1166414_+|hybrid-cluster-NAD(P)-dependent-oxidoreductase
MMRDAATFGPVESRVTKPEFWSALPARWTSDVEETLVCCQVRQETHDVKSFFFRSPEGRAFVFEPGQFITLELEIDGETINRCYTISSSPTRPHTISITVKRVPGGKVSNWLHDNLQAGARVRVLGPAGEFTCARHPARKYLFLSAGSGITPLMSMSRAHHELSEDRDIVFVHSARTPDDIIFSRELDLIASNQVNFRTSFVCERVGSRTNWPGVTGFLTLPLLKLIAPDFMEREIFTCGPAPYMQAVRNLLDEAGFDRKQYHEESFSFETLIENEPEVAAEVLEAEEKANGAANGTQMFSVSFSRSNRSIECGSSQHVLDAARQAGVRLAASCTQGMCGTCKVKLVSGQVEMKHNGGIRQREIDQGMVLLCCSKPLSDLVVDK
>CP026112.1|AUT62207.1|1163926_1165207_+|aromatic-ring-hydroxylating-dioxygenase-subunit-alpha
MKVSADIRALVDRRKKGYSLEAPFYLSEEIFSLDMDAIFRQHWIQVAVEPDIPEPGDYVTVELGNDSILIVRDDDMQVRAFHNVCRHRGARLCNEDKGSVGNIVCPYHSWTYNLAGELMFAEHMGEKFDRCKHSLKSVHVENLAGLIFVCLAQEPPVDFAVMRAAMEPYLLPHDLPNCKIAAQIDIIEKGNWKLTMENNRECYHCVANHPELTISLYEYGFGYQRSPANAEGMDAFERTCIEREKQWEEMGLPSVEIDQLSDVTGFRTQRLPLDRSGESQTLDAKVASKKLLGGFEQADLGGLSFWTQPNSWHHFMSDHIVTFSVIPLSAGETLVRTKWLVHKDAVEGVDYDVANLTAVWNATNDQDRTLVEFSQRGASSSAYEPGPYSPYTEGLVEKFSDWYVQRLAAHVESPVAEQRTINIKAV
>CP026112.1|AUT62206.1|1163105_1163885_+|drug:proton-antiporter
MNGKLEKIAVLVSVGKHPVSGVARYSRNDAAALEIGRQLSSQHAARLDVLHAGDPGNPALEEYLALGAERVEVLTCADNGDAVGLLAVRLKGYDLVLTGTCAEGAFDSGMLPYRLADALQVPLVGTAVEVSIAGGRATVRQFLPKGVRRRVEVALPAVVAVHPLATVTPRYAYARLRAGSIAPQRVEAGADAEAAQWTLAPVARKPVRLAAAEKRTGHARMLSATTTESRGGSVVIEGTSVEKAQVILDYLREHQLIEY
>CP026112.1|AUT62205.1|1161930_1163109_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTTIKRIDPRRPFVITAAGLKRITLGAEHVAGASTDHALHAGAHGHAAVKTLRTTQASQRTLLVVAHSDRGGLDDHARQALAAAALIADAATQVALLVLGELKDDAAALGADKVIELPSFDRRTFAPEREVQAVAACVAQLAPAHIFIPDNPTGDGDLGRRYAALAGASIATHVVQIDAKQVSTYAQAKKAYATRALPDVILLAAGAVDTRLPFIGAGERLELTASAQTNDASNGAYRDLGIEEIDAAQVALEEADFIVSAGNGVTDVAAFEKLASTFGAAIGASRVAVDNGMFTRDKQIGATGKTVEASVYIAFGISGAVQHLQGIKDCRHVIAVNLDGSAPIVKRANLTIIGDTQATIASLIDEIDRARSGRGAGAAPVVKQIVEGVAA
>CP026112.1|AUT62204.1|1160007_1161927_+|DUF3483-domain-containing-protein
MSPAFLITALLWVSVAGLAFAVAKRAAYWRLGRATAAGAFGWTNLMTIPKRYFVDLHHVVARDPYIAKTHVATAGGAIAAFALVFINYGLAIYSPWLDRLIFLAALIMLVGAVFVWRRRHAKDVPARLSRGPWNTLPWLLGSFSLGLLLYTLLPASAMSGGLAIIFALLIAAGAFAMTFGAARGGPMKHALAGLLHLAFHPRQERFAAKGDVRREAVVPPTALKAPVLEQNEYGVGKPVEFRWNQLLSFDACVQCGKCEAACPAFAAGQPLNPKKLIQDLVTGMVGGTDAAYAGSPTPGIKVGQHGGDPQRPIISSLIEADTVWSCTTCRACVHECPMLIEHVDAIVDMRRNQTLVHGTVPGKGPEVLANLRETGTMGGYDKAARYDWSVDLNSPVAQPGKAVDVLLVAGEGAFDMRYQRTLRSLVKVLNKAGVNYAVLGGEETDTGDVARRLGDEATFQRMAKQMMGTLATLDFKRIVTADPHVMHSLRNEYRALGGRYEVLHHTTFLAELVASGKLAPKAIAAFNDKTITYHDPCYLGRYNGETEAPRQLLKTIGIKVVEMERHGKRGRCCGGGGGAPLTDIPGKQRIPDIRIADARTIGADVVAVGCPNCTAMLEGVVGPRPEVLDVAELVAAALE
>CP026112.1|AUT62203.1|1157941_1160005_+|FAD-dependent-oxidoreductase
MRYPNLFKPLTLNQLTLRNRIVSTAHAEVYAEPGGLPGDRYIRYYEEKAKGGVGLAVCGGSSPVSIDSPQGWWKSVNLSTDKIIDPLSRLAEAMHRHGAKIMIQATHMGRRSAFHGEHWPHLMTPSGVREPVHRGNAKIIEVEEIRRIISDFAAAAKRVKDAGMDGIEISAAHQHLIDQFWSPRTNFRTDEWGGSLENRLRFGVEVLQAVREAVGKDFCVGLRMCGDEFHEDGLDHEQLKEIAQAMSEKGLIDYIGVIGSGADTHNTLANCMPPMALPPEPFVHLAAGIKSVVKLPVMHAQSIRDAGQAERLLANGMVDLVGMTRAQIADPHMVIKIRDGREDEIKQCVGANYCIDRQYNGLDVLCVQNAATSREATMPHVIEKTRGPRRKVVVVGAGPAGLEAARVARSRGHDVVLFEKSDAVGGQIMLAAKAPQREQMAGIVRWFDMETKRLGVDRRLGVEADEKMILAEKPDIIVLATGGTSFTQQVPAWGVEEGLAVSSWDILSGKVEPKQNVLVYDGVSTHAGAGVADFISSRGSKVEIVTPDVKVADDVGGTTFPIFYRRLYAQGVIHTPNYWLDRVYEEDGKKIAVIRNEYTEEQEERVVDQVIIENGSTPNDALYWKLKSESVNRGQVDVHKLFAAEPQPSLSEELGNGRFLLFRVGDCISMHNIHGAIYDALRLCKDF
>CP026112.1|AUT62202.1|1157311_1157857_+|4-vinyl-reductase
MQPQLPIDVDPNTGVWTTDALPMLYVPRHFFTNNHAAVEEALGVEAYAEILYKAGYKSAYYWCDKEAKQHGISGMAVFEHYLNRLSQRGWGLFKIIEADPATAHAKIELRYSSFVLQQPEKSGKLCYMFAGWFAGAMDWVNDTTEGGKKAPRSQSKEAQCAGEHHDHKHDHCVFEVSPLAA
>CP026112.1|AUT62201.1|1156308_1157280_+|membrane-dipeptidase
MSNLHDSSIIIDGLNISKFDRSVFEDMRKGGVTAVNCTVSVWEDFQKTIDNIAEMKQQIREYSEILTLVRTTDDILRAKKENKTGIIFGFQNSYAFEDNLGYIEVFKELGVNVVQLCYNTQNLVGTGCYEPDGGLSGYGREVIQEMNRVGIMVDLSHVGGKTSSDAIACSKKPVTYSHCCPSGLKEHPRNKSDEQLKEIADANGFVGVTMFAPFLKRGPDATVEDYLEAIDYVINVIGEDKVGIGTDFTQGYSTEFFDWITHDKGRYRRLTNFGKVVNPEGIRTIGEFPNLTAAMEKAGWSESRIKKVMGENWLRVFGEVWNV
>CP026112.1|AUT62200.1|1154990_1156265_+|serine-hydroxymethyltransferase
MSNANPFFSQTLAERDAAVRKSVLKELERQQSQVELIASENIVSRAVLEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERIKKIFNAGFANVQPHSGAQANGAVMLALAKPGDTILGMSLDAGGHLTHGAKPALSGKWFNAVQYGVDRETLRIDYDQVEKLAHEHKPSMIIAGFSAYPRVLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHPNPIEHAHVVTSTTHKTLRGPRGGFVLTNDEDTAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALEDNFKTYIDNVLANAQALGEVLKEGGVDLVTGGTDNHLLLVDLRPKGLKGTQVEQALERAGITCNKNGIPFDTEKPTVTSGIRLGTPAGTTRGFGVAEFRDIGRLILEVFDALRTHPDGDAATEQRVRREIFALCERFPIY
>CP026112.1|AUT62199.1|1153436_1154456_-|GlxA-family-transcriptional-regulator
MSPDRTASLSHFAFMPLPNFTMIAFTNAIEVLRMANYLSGQTLYRWSVISPDGGPVSASNGLSVDTGPADCVGTPDIVFVCGGIDVQRVTTPEHLSALRRFARAGVALGSLCTGTYALAKSGLLAGYACAIHWENMSALKEEFPDIRFLKELFVIDRDRVTCTGGVAPLDMMLNLIAARVGTPRVTQIAEQFIVEHVRDNNAQQRMPLVARLGSANKSLFEVIALMENNIEEPLSREELARLANMSQRQLQRLFREHLGMTPTHYYLTLRLRRARELLLQTDMSIMHITMACGFQSACHFSKSYRDAFGTAPTRERRKQVAPLAHAVISNSIGGVVVHA
>CP026112.1|AUT62209.1|1167317_1168187_+|glycine/betaine-ABC-transporter-substrate-binding-protein
MKHLKKLMLCGALLAAMSAIGTGTAAADTKPTIKIGYVEGWDDSVATSNVAAQIIEKRLGYPVQLVPVAAGIMWQGVARGDLDATLSAWLPVTHGAYWDQFKGKVQDLGANFNDAKIGLIVPADVPEKTIADLQAHKADFGGRIVGIDAGAGVMKKTSDAIKAYNLDYQLMPSSGSAMTAELARSMNANKPVIVTGWIPHWMFAKWKLKFLEDPKKVYGESEHVDSVINPGLDTKAPQVVAFLKKFQWKPGEIDSVMLATENGAKPADAAGSWIAAHGDRVNSWVGGAQ
>CP026112.1|AUT62210.1|1168329_1169985_+|APC-family-permease
MDQARLRTRSIEGATDGAAHEGHSLQRGLTWKDAFWVTSGVPGGVLFTIGGVSATIGQPAWAIWVAAILMGLIQSATYAEISGLFPHKSGGASVYGAMAWVRYSKTIAPVSVWCNWLAWSPMLALGTGLAANYALSSLYAPDAAINTWRLTLLDLSFIKQGLSLRINATFIIASIFLLITFKLQHSGASKAAKTQRILGIASLAPLLIVGIVPFVTGDVPAVHLWPLLPLGHDAQGNVTASTFGSWNGAGITMAFGAMFMAGWAAYGFETAVCYTREFRDPRSDTVKAIFWSGMACLVVMTLVPLAFQGVLGTKGMLDPKIADGTGVAAAMAHMVGGGAIVFDVVVIMLMLTILLIVMTSMMGSSRTLYQASVDGWLPKYLSHVNEHGAPTRAMWTDLGFNLILLLMSDYMTVLSISNVCYMIFVFLNLQSGWIHRLDRADADRPFRCPAWLLAAGALCGYLDLAFIGAGADMQGVGTMRNGLIAMLLIVPVFMFRHYVQDRGRFPARMQQDMEWKGGLRPAGLRGLLPYGALLLAVFVVWFSHYLAKPFL
>CP026112.1|AUT62211.1|1170041_1170920_-|formyltetrahydrofolate-deformylase
MPTTDRPHQFALTLSCPSAAGQVAAVVGFLDRHHCYIDELTVFDDDISERFFVRCVFHGVASAPEAALHIDTLRREFHPIAADFDMQWAMHDLDTRPKVLIMVSKLEHCLADLLFRWRMGELKMDIAGIASNHPDFEPLAVQHGLPFHHLPVTPETKQQQEAQILDLFESSGAELMILARYMQILSDETSRKLAGRAINIHHSFLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQEVQRVDHSYGPERLLAVGRDVECITLARAVKAFVERRVFINGDRTVVL
>CP026112.1|AUT62212.1|1171070_1171997_-|LysR-family-transcriptional-regulator
MPGPDRLPPMQTLSAFESAARLASFTAAARELGSTQPAVSQRIVQLEEDLGAPLFERGHRGVTLTPEGALLYEAVRSGLDTIREATADIRARRATGALTILTDAGFATYWLMPRLARLKASMPGVNVKIVTSQLGYDPHRDHADIAIAFGDGHWPPCTSTRLFAEAVTPVCSPAFRELHASVRVAADLAALPLLHVQPTDPERWLAWNTWFAAHGLQAPEDSQGMMFNSYSLVVQAALMGQGVALGWTPLTDELIASGLLVHLLDTPVTTERGYYLVCPPARPAPAAVPLFRRWVFNELIDVGEHAHA
>CP026112.1|AUT62213.1|1172138_1173680_+|choline-sulfatase
MSLNTKQNIVILMADQMTPFALRAYGNQVSLTPRIDALAKEGVVFDSAYCASPLCAPSRFSMMAGKLPAAIGAYDNAAELPAQTLTFAHYLRAAGYRTILSGKMHFCGPDQLHGFEERLTTDIYPADFGWVPDWDRPDVRPSWYHNMSSVLDAGPCVRTNQLDFDDEVTYTTRQKLYDIVRERAAGGDARPFCLVASLTHPHDPYAIPQQYWDLYRDEEIDMPRVTLTREESDPHSKRLRDVYEADITPPTEQQVRDARHAYYGALSYVDAQFGAILDTLKATGLADDTIVIVTSDHGEMLGERGLWYKMTCFEGGVRVPLIVHAPKHYRAHRVAASVSHVDLLPTLVEMATGARRVEWPDSVDGQSLIPHLHNDGGHDEAIVEYFAEGAIAPMMMIRRGKYKFIHTPVDPDQLYDLADDPQERVNLAQDPKNAALVDAFRKEIAQRWNIPALHQAVIASQRRRRFHFEATTQGTIRSWDWQPFNDASQRYMRNHIELDTLEAMARYPRVVSG
>CP026112.1|AUT62214.1|1173721_1174687_+|choline-ABC-transporter-substrate-binding-protein
MNIRWRSSLAKAALVLAACGIALTGSSHAAEPQSCTQVRMADPGWTDIDATNAVTGVLLKALGYQQNVSNLSVPITYQGLKKGQIDVFLGNWMPAQGPLVKPFVDERSIDVLHANLTNAKFTLAVPDYVAAAGVHSFADLVKHADQFNGKIYGIEPGAPANQNIKKMISDKAFGLGDWKIVESSETGMLTQVERAVRDKQWIVFLAWEPHLMNTKFHLTYLSGGDAYFGPNYGGATVNTVTRAGFSGQCTNLARLFQQLTFNVDLENQIITNVLQNKVDIITAASNALKGNPALLNTWLKGVTTTNGGDGLQAVQAQLGIH
>CP026112.1|AUT62215.1|1174929_1176072_+|porin
MKKLNAAALTGVALALAGMSNASHAQSSVTLYGIIDAGITWVNNTGGSHVVKFDDGISYGNRFGIKGTEDLGGGLQAVFVLESGFHLGNGQLGFGSALFGRQAYVGLKNQWGTLSFGNQLDMTEEMVYLYNISAWGSGYAIHQGDFDRFNGDRLPNSVKFLSNEFAGFMFGGMYSFGNVAGDFHQDSAWSVGAHYANGPFTMGAAYTQLNNPHGIYAFDPYAMLGVHTFLGQQTVTVDPATGARTDLFSSNPFPVDKQGTFGVGSSYAIGDVTLMGNFTYTTIKGLGVTSHMKVGEGGASWQVTPAFSVIGGYQYTNFEGHHWNQGSLGAHYLLSKRTDVYISGDYLKASSGVDAVIGYSFTPSATTTQADVRIGMRHSF
>CP026112.1|AUT62216.1|1176133_1177126_-|GlxA-family-transcriptional-regulator
MPEDISFLLLPGFSALGFMSAIEPLRVANRFRENLYRWHILSVDGAPVAASNGISMNAEAAFGDVDHARTVFIVAGFDPLACYNRALGDWLRRLDHAHATLGGIDTGAFILAEAGLLRATDSVTLHWEALSAFRERYPSVDASEELFEIGARRITCAGGTASIDMMLDLISRSHGAALASSISEQFVVSRIRQRSDHQRMEIAARYGVHNRKLIQVIGVMEQNMEEPLAPADLAQEIGVTRRQLERLFCSSLKDTPTHFYLQLRLDRARELLRQTDMSITAICVACGFESPSHFSRTYRARFGASPRSDRSPLRHTAGGNANTTLETAVP
>CP026112.1|AUT62217.1|1177428_1178379_+|choline-ABC-transporter-substrate-binding-protein
MKLIIKAISACLAGLLAALSLPALAQDPPSCRAVHFADIGWTDITSTTALASTVFEGLGYQPVTTVASVPISFAGLKSKQLDVSLGYWWPVQEKAIAPFVDAKSINVLQPPNLTGARATFAVPTYEYDAGLKTFADIAKHRAELDGKIYGIEPGSSANAAIQKMIATNQFGLGGFKLIESSEAGMLVTVDRAVREKKWVVFLGWQPHPMNIQLDMKYLSGSEGVFGPNDGEARVYTLTSPDFLTRCPNAGKLVSNLRFTTQLENVVMQSVMNKEKPAEAAKAYLKKNPQVLDEWLAGVKTYDGKDGLPAVKAYLGL
>CP026112.1|AUT62218.1|1178454_1179384_+|3-keto-5-aminohexanoate-cleavage-protein
MNHEVIVTCAVTGAGDTVGRHPAIPVTPKQIADAAIEAAKAGATVAHCHVRDPKTGRGSRDPNLYREVVDRIRSADTDVIINLTAGMGGDLEIGPGEDPMRFGAGTDLVGGLTRLAHVEELLPEICTLDCGTLNFGDGDYIYVSTPAQLRAGAKRIQELGVKPELEIFDTGHLWFANQLLKEGLLDAPPMFQLCLGIPWGAPADTTTMKAMVDNLPPGAQWAGFGIGRMQMPMVAQAMLLGGHVRVGLEDNIWLDKGVPASNGSLVTRAVEIIERLGGRALTPAEGRKKLGLPARGERLLEKRAAEQFA

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Crispr_ID: CP026112_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026112_3

2048739-2048826

Orphan

Consensus_repeat	Method
AGGCAAACCAAACCGCTGGCACAGCAAACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026112_3

>merge|CP026112|3|2048739-2048826|CRISPRCasFinder
AGGCAAACCAAACCGCTGGCACAGCAAACACCGCCCTCCGGATGCCAGCGAAAACCCAGGCAAACCAAACCGCTGGCGCAGCAAACAC

>CP026112|3|3|2048739-2048826|CRISPRCasFinder
AGGCAAACCAAACCGCTGGCACAGCAAACAC	CGCCCTCCGGATGCCAGCGAAAACCC
AGGCAAACCAAACCGCTGGCGCAGCAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP026112.1\|AUT63857.1\|2051481_2051700_+\|transcriptional-regulator	unknown	unknown	unknown
CP026112.1\|AUT62912.1\|2043639_2044143_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT63856.1\|2050399_2051086_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|377026
CP026112.1\|AUT62917.1\|2046920_2047673_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP026112.1\|AUT62921.1\|2054294_2055044_+\|CDP-diacylglycerol-diphosphatase	unknown	unknown	gnl\|CDD\|376857
CP026112.1\|AUT62920.1\|2052833_2054288_+\|amidase	unknown	unknown	gnl\|CDD\|236030
CP026112.1\|AUT62918.1\|2049029_2050070_+\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
CP026112.1\|AUT62911.1\|2043373_2043643_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62914.1\|2044337_2044574_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62910.1\|2042309_2043377_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62916.1\|2044838_2046536_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
CP026112.1\|AUT62909.1\|2041408_2042320_+\|endonuclease	unknown	unknown	gnl\|CDD\|378216
CP026112.1\|AUT63858.1\|2055182_2056301_+\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|239586
CP026112.1\|AUT62922.1\|2057015_2057222_-\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62913.1\|2044135_2044315_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62919.1\|2051837_2052743_+\|aminomethyltransferase	unknown	unknown	gnl\|CDD\|153097
CP026112.1\|AUT62923.1\|2057220_2058402_+\|lipopolysaccharide-heptosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223928
CP026112.1\|AUT62915.1\|2044545_2044842_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369574
CP026112.1\|AUT62924.1\|2058528_2059317_+\|phosphate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
CP026112.1\|AUT62908.1\|2041073_2041412_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235359

Protein	Function_ID	Function_description	E-value
CP026112.1\|AUT62918.1\|2049029_2050070_+\|TIR-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.10801e-14
CP026112.1\|AUT63856.1\|2050399_2051086_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	2.84293e-19
CP026112.1\|AUT62917.1\|2046920_2047673_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	7.11029e-87
CP026112.1\|AUT62921.1\|2054294_2055044_+\|CDP-diacylglycerol-diphosphatase	gnl\|CDD\|376857	pfam02611, CDH, CDP-diacylglycerol pyrophosphatase. This is a family of CDP-diacylglycerol pyrophosphatases, EC:3.6.1.26. This enzyme catalyzes the reaction CDP-diacylglycerol + H2O <=> CMP + phosphatidate.	1.12527e-90
CP026112.1\|AUT62920.1\|2052833_2054288_+\|amidase	gnl\|CDD\|236030	PRK07488, PRK07488, indoleacetamide hydrolase.	0
CP026112.1\|AUT62916.1\|2044838_2046536_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	2.61422e-20
CP026112.1\|AUT63858.1\|2055182_2056301_+\|fatty-acid-desaturase	gnl\|CDD\|239586	cd03509, DesA_FADS-like, Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.	7.03862e-111
CP026112.1\|AUT62909.1\|2041408_2042320_+\|endonuclease	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	4.96283e-26
CP026112.1\|AUT62919.1\|2051837_2052743_+\|aminomethyltransferase	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	0.0024552
CP026112.1\|AUT62923.1\|2057220_2058402_+\|lipopolysaccharide-heptosyltransferase-family-protein	gnl\|CDD\|223928	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].	8.18173e-36
CP026112.1\|AUT62908.1\|2041073_2041412_+\|hypothetical-protein	gnl\|CDD\|235359	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional.	1.04433e-07
CP026112.1\|AUT62924.1\|2058528_2059317_+\|phosphate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	9.42518e-27
CP026112.1\|AUT62915.1\|2044545_2044842_+\|hypothetical-protein	gnl\|CDD\|369574	pfam07887, Calmodulin_bind, Calmodulin binding protein-like. The members of this family are putative or actual calmodulin binding proteins expressed by various plant species. Some members are known to be involved in the induction of plant defense responses. However, their precise function in this regards is as yet unknown.	0.00101411

>CP026112.1|AUT62917.1|2046920_2047673_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNQIDLKGRVVAITGGARGIGYAVAQRALRSGAAVALWDVDTERLERSAKELSELGKVAAVTVDQTKEAEIDAAVSKTLAAHGAIDVLINCAGITGGNGTTWELEPDMWRRVIDVNLIGPYLACRAVVPQMLKQGYGRIVNIASVAGKEGNPNASHYSASKAGLIGLTKSLGKELATKNILVNAVTPAAAKTEIFDSMKQEHIDYMLSKIPMNRFLLPDEAASLILWLASEDCAFSTGAVFDLSGGRATY
>CP026112.1|AUT62916.1|2044838_2046536_-|recombinase-family-protein
MARRKAVEEPIAGKPRLFIYGRFSSKKQASGDSYNRQMTYAREWAEKHGFEVDDKLTMFDHGLSAFNGDHVKKGALGAFLIAIQKGVVRPGEVLLVESLDRLSRAEELDALGQFATIVQAGITIISMQDGIYNQERIRETQGGILHAALAVMTRAHNESERKSYLVSKAAHAACIAWSAGKGVKPISVGNDPSWVRWNDDLKRFEHIPDQVASLRKLLDLYRIGNGAVRIFERMRATGIALPKGVSNVARVTRLVKHRALVGEKTVKVGDAPAYTIPNYYPSILTEDEFTALQHIRKQRGRRVGKAEVISFMTGMRLTFCANCGSSMGNQNIMNRSRREDGLPQDGHRRLKCSGEQKSVNRCWAGSCSIVPIERALMEFCSDQMNLASLFIDGNEKAEALGSALTRTRQDAEKAQAALDTFMEVGALDSKAAGAKVIRAQIAKLSIELEEKNAEVGHLEYELASLHQHSTPAVAEVWAALREGVRLLDNDARTKARQLVADTFARIEVGLAHDDLIELRLVSRRDVVRVLRVDRKTGERLDQETVDNTQHEALKRRPRKQVRKAA
>CP026112.1|AUT62915.1|2044545_2044842_+|hypothetical-protein
MTSKTVREPDERIGDASLAHSVIAARAWDGFTITTEDGRPATLAVVDPSTGQVIESGPDLVNEVWDVAVEAYRRFLIGEKALRVMSTPQGFFGEKEAD
>CP026112.1|AUT62914.1|2044337_2044574_+|hypothetical-protein
MSIAGEIVSIIDYIRRSHRDPRHGSRADHLGPLGVTHLREVLKRLEALRVRVADDASAAALSHHNGEVHHDQQDSSRT
>CP026112.1|AUT62913.1|2044135_2044315_+|hypothetical-protein
MSDHSRRYFDRRSLDARRQRLPLVAQLMSGLLAALVIVLLVLAITSASWAILHLIHTAP
>CP026112.1|AUT62912.1|2043639_2044143_+|hypothetical-protein
MIDFQQQEMRVVHVNVRTEVVGDDERLAMDLRVEVDLPNTCLDRLDDSLRPSLYRADGDGDLLGKDAAHMPHLRFPQLGPLAWNGSVSPVALTLHLGTRKNELRLTDAKFNKLRIAPREGGTCGLVWRLQVHPTEDEAAKVMTVLKHTVKGTLDTSEATIDGDDEDE
>CP026112.1|AUT62911.1|2043373_2043643_+|hypothetical-protein
MILGTHAIADEFERFAKSDIPADASTGQHADMQRAYFSGVLLVLRLLEVLGALPEAVAFEALQELRREANAFAVSQIIIGVVLTHGDTQ
>CP026112.1|AUT62910.1|2042309_2043377_+|hypothetical-protein
MTNEIIARDEDTADLAPHTYEELMDFARMVANSGLAPKDYDGKPEKCAVAMQWGNELGLKPMQSLQNIAVVGNRPSLWGDAVLALVTSSPACKDVIEFFEDEDTEDMTAVCIAQRHGKGDKTGRFSIADAQTAGLVGKDVWQKYPKRMLQMRARGFALRDQFPDVLRGIPITELVREAIDMGRVEEVDPATGEVRTETAGAKRAGTADRVKSKLRRVTLAAVIKAIDDARDADALKAAGDMAARLADDDEKRQAREHWQAKLNAERAKSRADTKGDAKTDPKTEPQADQKDNGFTVTYAEVASSMESAERRGDIDALAAAADLIAQVGSKKQQAELRTLFDAAMERMQGTTGETT
>CP026112.1|AUT62909.1|2041408_2042320_+|endonuclease
MNTIDRAAWIEQRKSGVGGSECAAALGLDPHVTRRELWERKLGHLPDTEDNERMAAGRHIEPAIATWAAEKYGLHLRQRHQSVVHARHKWMRANVDRLIVGQRCGLEIKNVDRLVVLQSGEWGEEGSGDVPERHYLQCQHYMCVLNYPLWDLVACVGGNELRRYHIERDAEVVEEVVAREYEFWQYVEREEPPPFDFDHASTLPLLKKLYPGTNGGVIDLSPDAVHWHFTLVEAALKAKHYDAVVDGCKAHLLELMGDAAIGRIPGNCGEYRRKVVQRRGYEVAPCTYTDFRFKSSKGDVHDE
>CP026112.1|AUT62908.1|2041073_2041412_+|hypothetical-protein
MKRRTSLTIGVNSTLDELESARMYIDHLVEKAKQPPSVTRPATKLPRLAALGMAKSVTNALRDAEITTVDALVKHSVQTLLHVPGLGMKSILQIQQALSERGLALHNGDTHP
>CP026112.1|AUT62918.1|2049029_2050070_+|TIR-domain-containing-protein
MRPIFISYRREDTEGQAGRLFESLREVFGEHTVFMDVATIEPGADFRRAIETNIDKCAVLLALIGKTWLTVTDREGKRRLDNPSDFVRLETSSALKRDVTVIPVLVQGATMPQEADLPADIKDLAYRNAFELTHARWDSDMELLIKTLRTHAADEPGDSAPTDTPHAKPTPNANAGKSHTRMWTIGGAVAAVALMGAVVSKMSGAGHEAKADTTVVASEPVPTATTTTATPGNQAGKGDQMVSKKALQRAAHDRGACVRPFVWRQAQPRDKVCVTPDTQLRILAENRAASDNRTPNGGAYGPDTCKPGFVWRAAFDGDTVCVTPESRQMTADDNMLGARRIVPLPQ
>CP026112.1|AUT63856.1|2050399_2051086_+|NADPH-dependent-oxidoreductase
MTRFDQNRRPLVIGIGGTTRAASSTERALGFALRGAEQAGARTRLFGGTFLHSLPHYAPESTQRTAEQIELIEAVRHADALIIATPGYHGGVSGLVKNALDTLEELRADERPYLDGRAVGCIVTAYGWQAAGSVLTSLRSIVHALRGWPTPFGAGINTLETRFESADTCSDPKVVEQLSIVGQQASQFALAFRSHHASHHADGASAASATSATDADETRHKRVLALAT
>CP026112.1|AUT63857.1|2051481_2051700_+|transcriptional-regulator
MNRHIRYKGYEVAPAAQRLPNGLFAANLTIEKATAASGGHAYSFDALDYFFDEEHALAYAFRWGRLWIDSHQ
>CP026112.1|AUT62919.1|2051837_2052743_+|aminomethyltransferase
MSDTLITDAEAAHDHALRNWTFDGHARMRVGSDEHRQMFCRMLLETHNPYKPAVIDWPQLQPDALKRITSLPIWDIAVQTEGRASIRVATYAAQVQDPLIREAIEMDAAEEARHKHVLSRLVAAYGIELAPEPAYPAPRDAEWAWMFTGYSECIDSFFSFGLFRSAQLSGYFPEELVETFEPVIQEEARHILFFVNWVAWYRRTMPWWRRPWHSLRVGAIWIKLIWDRVAIAKGIDSNGVAHDSNFLPANSSTIGQALSTRQLIELCLVENDQRMAGYDKRLVRPTLVPALARLALRFIRK
>CP026112.1|AUT62920.1|2052833_2054288_+|amidase
MQWTVDEQLALTATQAVAAIQSGRLDALDYVATLLARAAALDTLNAFTAIDMEGALTAAKRIDALPPDEKARLPLAGLPVVIKDNINTAGLLTSAGTPALDGFKPKTDAPSVRKLIDAGAIVLGKTNMHELAFGITSANLAPHAGVVRNPYDPSLIAGGSSGGTAVAIAARVSPAGLGSDTGGSTRIPAALTGIAGFRPSVGNGGAERRYHDPQAVVPISHTRDTVGPMARTVADVALLDGVITGDTALPDVPLPALRIGLPEPLWAELERATEDVARAALQRLEAAGITFVPVAMPDLLQLNEQTGGPIAIHEALDDVRDYLVANDAPVQTVGELAAHIASPDVRNIYDVVLAGALAQHYPDAMNTWRPQLQRHYADTFAAERLDALLFPTTRLVAVPIDEVNGSSVVSIDGAPAIDEMTAYLRNTDPASNAGIPGLSLPAGLTQDGLPVGIELDGPLGSDRRLLAIGIAFEALLGTVPAPTI
>CP026112.1|AUT62921.1|2054294_2055044_+|CDP-diacylglycerol-diphosphatase
MTRPRIRHLAALAVALWTSGCALIAAADPNALWNIVDHQCVPAARASGGAGFCTAVNLPGHYAILKDINGNTQYLLIPTDRVTGIESPSVLAADAPDYWADAWAARQYVGSRIGLTFPPDQLGLEINSQFRRTQNQLHIHMDCMQDDIIKDLARFRTIEPGQWHWTKLDGSAYRVMRVLSLTGENDPFRIVARDRQGSDVMAQQTILVTGAGPKDSDGWLVVNSGLELDDGSGTAEGMLDHACRIGMHQ
>CP026112.1|AUT63858.1|2055182_2056301_+|fatty-acid-desaturase
MSFYLDDAQRHTLTQRRNSFTWRTEWPTWLLIGAIYGGWFFIASHARGFGLSIAIPLLAVFSAWYMSLQHELLHGHPTRSPFVNGLIGFAPLAVWFPYRVYRDLHLQHHDDPHLTHPEVDPESYFVSREAWRQAGVLTRVLLIARNTFVGRLLLGPAFSIAATSTQALRKVARGDWADVPAWVAHFVALAGLVVWLDRQCGIAPWMFVAGVGYPALALSSVRSFQEHRNADLHEHRSVINEAAWFWRLLFLNNNYHLVHHDLPHVPWFALRKVYVASRVQYVQRSGGFLVKGYGEWARQYAFAVALRPVHGDLSRGARFGRPAAAAAFDTFSGGLQAPLRVTSTTPVARREARGSANGERDAPRHGRYESRS
>CP026112.1|AUT62922.1|2057015_2057222_-|hypothetical-protein
MDRILLACKAARYAVDCDGLWAYGNAEVPVYSVNSMWWFFCHCAGIRDLAFVARLVWFAWVCAGIRVL
>CP026112.1|AUT62923.1|2057220_2058402_+|lipopolysaccharide-heptosyltransferase-family-protein
MDWKNLLIESPVWLMARVHPPRFDPRRDTPREILVLRPNDFGELLTTTPLFESLRKQFPSTRLIAGIGSWGRPILENNPYIDEIVELDAPWNNKIVADRSHKNVLRFLWKSPQIAALRARGGFDVAIDVLGSYMGALLMMRLGARYRIGVRGYRGGWSGCQAHVVYARRQAGRAALAQGELLGATALPEVRPQLFLTTDERARATQLWMTSPPAGRPTVRIVAGVGAGVPTKAWPAREVGAALAQIAQALEQQGHACEVVIVGSAADQARAAEAIAAAGPGVSVRSVAGEAPMRLMFAIVEQADVVLTNSTMLMHVAAAFRRPTVAVLGGSITKPDVHDAIWGYPPPYLSVTPEKSVDGQRLKDWPEVGRVVQAVLQSVATVDAPRTSLDAAA
>CP026112.1|AUT62924.1|2058528_2059317_+|phosphate-ABC-transporter-substrate-binding-protein
MNQIAALPMYNVSPALAADWHALLADVLRHVDPRAVIVEPDDLHAFWRRPDLLLSQTCGYPYVLGLHEHVQLIATPRFDAPGCEGANYSSVLVTRDDAPFDSIEAFRGARAAFNSTDSNSGYNALRHTVAPHAKNGRFFGATLETGSHIGSLRAIAEDRADLAAIDCVTMAFARDAYPELTGSFREIGYTRSSPGLPLIASTHVAPEQADALRDALDEAVTSQPERAQRLKLKGFSRLPPEAYESIRQMENEARVANYARLA

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Crispr_ID: CP026112_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026112_4

2119629-2119710

Orphan

Consensus_repeat	Method
GCTGGCATCCGCGATTTGTTAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026112_4

>merge|CP026112|4|2119629-2119710|CRISPRCasFinder
GCTGGCATCCGCGATTTGTTAGCGTGCTTCACGCGTCGCCCCTGTACGTTTGCCTTTTCGCTGGCATCCGCGATTTCTTAGC

>CP026112|4|4|2119629-2119710|CRISPRCasFinder
GCTGGCATCCGCGATTTGTTAGC	GTGCTTCACGCGTCGCCCCTGTACGTTTGCCTTTTC
GCTGGCATCCGCGATTTCTTAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026112.1\|AUT62975.1\|2120500_2120947_-\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
CP026112.1\|AUT62977.1\|2121808_2122123_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62976.1\|2121332_2121671_+\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62969.1\|2110997_2111987_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
CP026112.1\|AUT62974.1\|2118901_2119585_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
CP026112.1\|AUT62968.1\|2109835_2110864_+\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380628
CP026112.1\|AUT62967.1\|2108491_2109394_-\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
CP026112.1\|AUT62983.1\|2127519_2128425_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
CP026112.1\|AUT62978.1\|2122165_2122501_-\|hypothetical-protein	unknown	unknown	unknown
CP026112.1\|AUT62982.1\|2125081_2126209_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026112.1\|AUT62970.1\|2112009_2112810_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP026112.1\|AUT62965.1\|2105096_2105837_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
CP026112.1\|AUT62980.1\|2123536_2124820_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273584
CP026112.1\|AUT62971.1\|2112840_2114064_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
CP026112.1\|AUT62972.1\|2114057_2117135_-\|glycosyl-transferase-family-51	unknown	unknown	gnl\|CDD\|223815
CP026112.1\|AUT63862.1\|2126205_2127171_-\|hydroxyproline-2-epimerase	unknown	unknown	gnl\|CDD\|172473
CP026112.1\|AUT62981.1\|2124816_2125089_-\|ferredoxin	unknown	unknown	gnl\|CDD\|379229
CP026112.1\|AUT62973.1\|2117506_2118784_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026112.1\|AUT62966.1\|2105854_2108245_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|340393
CP026112.1\|AUT62979.1\|2122606_2123383_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117

Protein	Function_ID	Function_description	E-value
CP026112.1\|AUT62975.1\|2120500_2120947_-\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	2.35915e-92
CP026112.1\|AUT62980.1\|2123536_2124820_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	1.32376e-27
CP026112.1\|AUT62979.1\|2122606_2123383_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	3.03103e-27
CP026112.1\|AUT62969.1\|2110997_2111987_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.10165e-81
CP026112.1\|AUT62974.1\|2118901_2119585_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	6.53554e-58
CP026112.1\|AUT62968.1\|2109835_2110864_+\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380628	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	1.27737e-154
CP026112.1\|AUT62967.1\|2108491_2109394_-\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	1.1312e-24
CP026112.1\|AUT62983.1\|2127519_2128425_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	2.44035e-103
CP026112.1\|AUT62970.1\|2112009_2112810_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	5.98586e-96
CP026112.1\|AUT62965.1\|2105096_2105837_-\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	3.93926e-11
CP026112.1\|AUT62971.1\|2112840_2114064_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.41532e-40
CP026112.1\|AUT62972.1\|2114057_2117135_-\|glycosyl-transferase-family-51	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	2.81282e-37
CP026112.1\|AUT63862.1\|2126205_2127171_-\|hydroxyproline-2-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	6.8656e-150
CP026112.1\|AUT62981.1\|2124816_2125089_-\|ferredoxin	gnl\|CDD\|379229	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.	2.15404e-18
CP026112.1\|AUT62973.1\|2117506_2118784_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	6.67892e-64
CP026112.1\|AUT62966.1\|2105854_2108245_-\|HAMP-domain-containing-protein	gnl\|CDD\|340393	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases. This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.	1.08246e-41
CP026112.1\|AUT62982.1\|2125081_2126209_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.11925e-46

>CP026112.1|AUT62974.1|2118901_2119585_+|TetR/AcrR-family-transcriptional-regulator
MKKGSRAIAPEQNETPNEPSEPRRKYDPEETKRNILEVATQEFSSMGLTGARVDAIAERTNTTKRMLYYYFGSKEGLYEAVLEKVYGDIRALEQDLKVSDMSPVDGLRSLVEFTFDYHDKHRDFVRLVTIENIHGAKYIEQVKTFKNRNATVIHTIEDLLARGVASGDFRDDIDPIDLHLLISSLCFHRIANRHTFGNAFGRDPSHSRLRARHRAMIVDATLRFVKR
>CP026112.1|AUT62973.1|2117506_2118784_+|FAD-binding-oxidoreductase
MQSYYEATVERPVRPALAGNLSANVCIVGGGLAGLSTALGLAERGVRDVVVVEANQVGYGASGRNGGFVFGGYSLDCADLLKILGPERARELYALTIDAVDLMRARIERYAIACDATDAGVILANWFDDPSRLDGQRRLMKETFGVEWEPLGPAELAAQLKTTRYHGGLFERNAFHFHPLKYVLGVARAAEAAGVRIVEQSPVASLRRQGAGYVVGTAQGSIDARHVVMAGGGYARNVYRRVERAVLPIATYVMATEPLGARLADAIDCRCAVYDTRFAFDYYRPLPDTRILWGGRISILEREPEAIARLLRRDLLRVYPQLRDVRIDHAWGGLMSYARHKMPQIGQSADGIWYAVGFGGHGMAPTTVSGELLAAAIAGERPVPDAFAAFGLTHTFGALGLAAAQLTYTAMQTRDALADRSRRPG
>CP026112.1|AUT62972.1|2114057_2117135_-|glycosyl-transferase-family-51
MNRPLRFPLRAISTTSAWKWFKWLLFASFLVAVALGVRFVQIEMDTSRLQARYLSELTRDVGFTVSEGPSDNIRFPTDGPYDIRLGYALLPAFERRLKERGFSVASQARDSERMASLADDGLFIPYEEKDQAGLMLYDSTGARLFGSQYPARAYDDFESVPPLVVSALLFIEDRHLLDPDQPNRNPAIDWGRFSRALMDQGLRVFNHNQAQPGGSTLATQIEKFRHSPGGRTATPKEKLRQIASASVRAYLDGPRTMPAREQIVVRYLNSVPLAAQPGIGEINGIGDGLTAWYGRDFAEVNRVLKAPSTPDNLAEQGLAFRQVLSLMIAQRGPSHFLLRKNDDLNALTESYLRLFAANGVITPELRDAALSQQLVLTRAKLAPPEGSYVERKAVTSLRTHLLSSLGVSTLYDLDRLDLRVTSTMNNKVQQDISDRLAAATTKDGAQAAGLYGFNMLQPKDDPSNIAFSFTLFEKRDGANLLRVQTDSVNRPFDINSGARLNLGSTAKLRTIITYLQIMQDLHARYGEMSVEELRAVKPEREDALTRWAVDYFMHTKDHSLTAMLDASVERKYSANAGETFYTGGGAQTFTNFEADENSRILTVHQAFQHSVNLVFVRMMRDIVHYETIRTSGPSSQWLDDPATRNMYLTRFADQESRVYMNRFYTKYHGKTQDEMLAILLRGVRKSPPKIATVLRSVRPDASQAWFNDQMRAALKNTPKANPPDDALAKLYEKYAIDKFNLNDRAYISSVHPQELWLVNYLREHPDANANQVMDASRDVRADSYKWLFKTRYHATQDRRIRRMVEQHAYDAIARSWQALGYPFSHLTPSYAAAIGASGDRPAALAQLIGVIVNKGNQAPTQSLSELEFAKGTPYETRFVRATPQPTEAISPEIARVAQTLLRDVVAGGTARRLAGGITFPNGKTLEVYGKTGTGDQRLNIYAKGRRLIESRKVNRTATFVFAIGDRFFGTLTAVVHEPYAKRYDFTSALAVQLLKSMAPGLQPLLDEPASKDTPKVAASTVPKDQ
>CP026112.1|AUT62971.1|2112840_2114064_+|ROK-family-transcriptional-regulator
MDTGTRSPLKRTVGSNQVGMRQFNERIVLQAIRLHGPLPKADVGRLTRLSMQTVSMIVERLIDDGLLEKQARVRGRIGQPSVPIALRAEGAYTIGVKVGRRSLDVLAMDFLGRVCCREVQEYAYPDPRTLFPALESKLARINEALGARREKVVGVGVAAPLWLGGWRDFLGAPREALDAWNDIDIRARIASMTGLPVEFAKDTTAACAAELVMGQGRGIHNFLYLFVGTFIGGGLVIDGRLHGGPHDNAGAVGSIPIMSGNARQPAQQLLHAASGFVLEKLFVDAGAPATAAHDHRALSPDLWRLTEQWLDTACPAIAGALTNAAALLDLEAVVIDGEVDRQLVREIIRRTERVLDKFEWEGIVRPQLLEGTIGSDARAMGGAILPLYAHFAPMHELFLKPATDVSY
>CP026112.1|AUT62970.1|2112009_2112810_+|sugar-ABC-transporter-ATP-binding-protein
MSTTPSTTNGTTPVLQARGLIKRYGQVTALDGCDFEVMPGEIMAVIGDNGAGKSSLIKALSGALVPDEGDLLLDGKAVKFRSPLDARQQGIETVYQDLAVAPAMSIAENLFLARELVKPGWRGKIFKIIDKRRMLEEATNAMKDLQIGIRSMRQAVETLSGGQRQGVAVARSAAFARHVVILDEPTAALGVKEGNMVLELIRRVRDRGLPVILISHNMPHVFEIADRIHIQRLGRRAALVNKNDIHMSDAVAIMTGAKQADVRAIA
>CP026112.1|AUT62969.1|2110997_2111987_+|ABC-transporter-permease
MSTPTAPAHNHRRFADHLPSLAEAGPLVALVLACIFFISQSDRFLSFQNLSLIMQQTMVVAVIAIGQTLIVLTGGIDLSCGMLMAFGSIVMTKFAVVMGVPPVIAIACGVAASMLFGLLNGVLITRIKLPAFIVTLGTLNIAFAATQLYSNAESVSNLPDAMMFFGNTFNLGPATVTYGTVLTLLMYLGTWFVLRDTVPGRHLYALGNNPEAARLMGLSAQRILITVYTLAGALYGIAALLSVSRTGVGDPQAGQTENLDSITAVVLGGTSLFGGRGSIAGTLLGALIVGVFRNGLTLMGVSSVYQVLITGILVILAVAADKLSRRGAR
>CP026112.1|AUT62968.1|2109835_2110864_+|sugar-ABC-transporter-substrate-binding-protein
MNPISRRQLRRASRTQPIVKGIAAACVAASALWCASASLAADQPVVGLITKTDTNPFFVKMKQGAESAAQKDGAKLLTAAGKFDGDNAAQVTAIENMITAGAKAILITPSDTKAIVPSIKKARAAGALVIALDTPTDPQEATDALFATDNFKAGVLIGQYAKASLGGKPAKIATLDLAPGVSVGVLRHNGFLQGMGVKEGDPSIVCSQDTRGDQSKGQTAMENCLQKAPDINVVYTINEPAAAGAYRALKAAGKDKSVMIVSIDGGCEGVRNVKAGAIAATSQQYPLKMAELGVQAGVDYAKTGKKVSGYHDTGVTLITDKPQGGVDSKDTKFGLDNCWGNK
>CP026112.1|AUT62967.1|2108491_2109394_-|YihY/virulence-factor-BrkB-family-protein
MNRTRNRALHFVATHPARFALQVVKAFRKNQGLLLAGAIAYYALLSIVPLLILVAIAFSHFVGEKLLLDTLARLLEWLVPGQARAIVRELANFLANRTVIGWFLVVTMIFFSSLAFTVLENALSIIFVHRVAIRRRHFLLSAILPYLFSLSLGIGVLLVTLVSSSLHAVASDSIVLFGHTISLTGATRIVLYLLGVAGEIFVLTAIYLVIPAGRTTLRHALFGAVAAAVLWEVTRRVLVWYFATLSQVSVVYGSLTTAIIVLFSLEALATLMLFGAQMIAEYERLNAGPIEPAAQPFVTS
>CP026112.1|AUT62966.1|2105854_2108245_-|HAMP-domain-containing-protein
MTIRHRITLLVVLMLVALSAIGGYAVYQTRGSAADVRQVTQGVVPSALASADLVSQVKDVQLATMTLVYSPDANMVEQAQKELAAKEKSLREALDVQAKAAASHAQEGLVTQARDSLANYFAAINDTAKMKAEGKNDLAQAYLFANVAQYRDELEGIVETLRIEKNRQKDEAIDALNTGLATTTTAIGSASGAAILVLIAIGLLLYRQITRPLSRMQEMMSEIASSQDFTRRVPVGRMDEIGHSIVAFNGMIEKIQQSSAQLKQKTADIQAMLQNMQQGILTVVEDAKIHSEYSAYLEEIFETKDIAGRALMDLVFGDSDLGSDTVSQVEAAVLACIGEDSINFEFNQHLLVNELTRKMPDGRVKTLDLSWSAITDESDTVMRLMLCVRDVTELRQLAAEAGEQKRRLEMIGEILAVSEEKFHHFVESATGFINENERIIRQHAQVNEPAVAELFRNMHTIKGNARTYSLQHLTSIVHETEQRYDALRQPEAAHEWDQEQLIVELARVKEALQHYATINEVSLGRRKAGRVGSAERYLMVDREHIQESLRLLDAANPADMLDLLTARDSVRRTLRLLGTEKVEEALAGVLHSLPSLAAELGKAAPAVRIDDNGYRVRTQAGSMLKNVFMHLLRNSVDHGIEPAAQRVALGKPEAGVIDIEVGVAEGALQITLSDDGRGLALSRIRGIAADRGWLQPDSQLSDEAVAEFIFRPGFSTAQNVTEVSGRGVGMDAVRDFIRREGGRIELRFTDDHAGADFRQFQTIVYLPENCAVDSVGTSMHDAAQTVSSIQANAHFE
>CP026112.1|AUT62965.1|2105096_2105837_-|chemotaxis-protein
MVDQYVIAAALAGVAWGALAGLFVHRWWYRKRAATQQQTTLDTQNTVLAQAEERHAAEVRQHEQQARELHALVDTLRDDLAQQSVSANEAREALNALHLQKDEWLQQATRLSTEAGRLRHLSATFERWHEQMISLMAQNHDMHAKNNELSSIVRHVLIVSLNASIEAARAGAAGRGFSIVASEVRALAARSQELSKSYHDSLNRNDLITTATFQDIQAGGKMIAASLASVESLAGQIQSRLGQATT
>CP026112.1|AUT62975.1|2120500_2120947_-|type-II-3-dehydroquinate-dehydratase
MSFASVLVLNGPNLNLLGTREPTIYGAETLDDVARRCREAGQRLGLAIDFRQSNAEHELIEWLHDARTTQQGIVFNPAAYTHTSVAIADALSAIGKPLIEVHISNVHKREAFRHHSYVSAVADGVICGCGTQGYVLALERMAEILKLM
>CP026112.1|AUT62976.1|2121332_2121671_+|hypothetical-protein
MKKLAVTLSIPLLLAACAQYQASHNPDAGDPMKDNMTNRPVNDVIQCMTQAAAKHDTPVKATPIPQGQMLDFGESNIVKVRADNGGTTFRYYAGKRNTSNLWIESASKECAP
>CP026112.1|AUT62977.1|2121808_2122123_+|hypothetical-protein
MDYYKDRNDPTTRIATDSPAASAQAAAAKAAPPKKTTILRRLLSPHELATMLLLLHAPMAAFAKPEIPTLQEAGLVESIATDAGESHIRLTPEGNAILRGLGVK
>CP026112.1|AUT62978.1|2122165_2122501_-|hypothetical-protein
MPARRAKLRYYVYVVALDDTVWNEARFRRANPDYRFERPCVYVGMTGLDPDLRFDRHKAGIQSNRYVRDYGLRLMPELYEVFNPLPYDGARDMEVELAIGLRESGYGVWQA
>CP026112.1|AUT62979.1|2122606_2123383_-|AraC-family-transcriptional-regulator
MNTFASTLDALDSGEASLAGMLSHFALLEPVFDAMPDIVFFVKDAQARYALVNRTLVSRCGFKEKEKLLGKTAEDVFPSRFGRIYTAQDKAVIHVGNQMVDQLELHLYPGRQPGWCLTCKQPLRDAAGRVVGLAGISRDLRADEISHPAYSRLATVVQYLQENYVQPLNLKQLAAMADMSVAQLERYFHKVFHLTPRQVLLKTRLDAATALLVSHDKVTDVAALCGYTDHSAFTRQFKATVGVTPTEYRMLLHGTSRN
>CP026112.1|AUT62980.1|2123536_2124820_-|FAD-dependent-oxidoreductase
MNGQHFDVVVVGAGPAGLAAACEAAKTGARVAVLDDNPRAGGQVWRNGPAHPPSDELAALLHEIHANGNVALVSAARIIAPLDKGRLLIESAEQGGARIGYDRLILATGARELLLPFDGWTLPGVTGAGGLQALIKGGVPVRGERIVIAGSGPLLLASLATARAAGARVVAVVEQAPLASVLRFGVSLAATPAKLVQAAQLTRGFAGLRYLTSSVVRAAQGSGRLERAIVERPGGRMETIDCDRIACGYGLVPNTTLARALGCATRADGAIAVDDAQRTSVANIFAAGECVGVGGMELARVEGRLAGLTAVDVEQGEQLRRERERWQRFAARVESAFALRDYTRQLPADDTLLCRCEDVSIGEVRAHANWRDAKLHTRCGMGACQGRVCGGAAHSLLGWDVTQVRPPIHPAQIATLILAADEDTAAH
>CP026112.1|AUT62981.1|2124816_2125089_-|ferredoxin
MSETALSRVRVTIDGKPVEIEQGATIAAALAVCGGSAYGTRGSVTGEPRAPMCGMGVCQECRVTVDGRMHVLACQTVCRDGQIVQTMRPR
>CP026112.1|AUT62982.1|2125081_2126209_-|FAD-binding-oxidoreductase
MTADVVIVGAGIVGAACAAELAARGLRVTVLDAQGIGGGATAAGMGHIVVMNDSPAEFALSRYSRDLWLELAPQLRTRDAFARCGTLWVAADAEELDAAREMHAGFVAQDVAAQLLDEHALYDCEPSLAAGMAGGLLIGHDSIVYAPSAAQWLLTQSPGAARIEVRLHAQAVAVDAQHVTLSNGECVGGAHIVVANGLQARELVRGLPLQPKKGHLLITDRYPGFIRHQLLELGYIKSAHHATGTSVAFNAQPRPTGQLLIGSSRQFDTTDAAVEMPVLAQMLQRAARYLPELPTLNGIRAWTGFRAASPDGLPLIGPAGSAAPGVWLAVGHEGLGVTTSLGTAQLLAAQITQTAAAIAVDPFLPARFEFGACHV
>CP026112.1|AUT63862.1|2126205_2127171_-|hydroxyproline-2-epimerase
MGSMKTLNVIDSHTGGEPTRLVVSGGPDLGGGTLAQRLDVFRARFDDWRAGIVTEPRGSDVVVGALLCEPDRKECAAGVIFFNNVGYLGMCGHGTIGLVVSLAHMGSIGPGRHLIDTPVGIVEATLNDDLSVSVRNVPAYRHRKDVSVDVPGFGPLTGDIAWGGNWFFLVADHGRTLDASNIPELTHFSSTIRDALIAAGITGANGALIDHIELFGPGSREGLDSRSFVLCPGNAYDRSPCGTGTSAKVACLAADGKLAAGTVWRQESIIGSVFEASYAEGGTQDGIATVIPTITGHAHIMAESRLCFDERDPFAWGIRTV
>CP026112.1|AUT62983.1|2127519_2128425_+|dihydrodipicolinate-synthase-family-protein
MAHIWQGVLPAVTTKFNADFSIDRAWTGKNIEAQIDAGVDGIIVCGSLGEASTLSLDEKLQVLDVAVEASRGRVPVLLTIAENSTLDGCRQAEAGAKRGAAGYMVLPGLRYLSDRRETLNHFRMVADASPLPLMIYNNPLAYGVDMTPEMFAEIADEKKIVAIKESCGDVRRVTDLINEVGDRYAILCGVDNLAMEAILMGAHGWVAGLVCAFPHETVAIYKLLKAGRLEEARAIYRWFAPLLALDVSAKLVQNIKLAEAIVGLGTEPVRPPRLPLAGEERKAVEALIRRSIETRPALPKL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	CP026112.1	1945996-1946027	0	1.0
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	CP026112.1	1955423-1955454	0	1.0
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	CP026112.1	1226743-1226774	1	0.969
CP026112_3	3.1\|2048770\|26\|CP026112\|CRISPRCasFinder	2048770-2048795	26	CP026112.1	2048009-2048034	2	0.923

1. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to position: 1945996-1946027, mismatch: 0, identity: 1.0

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
ccttcgtggcgcgggcggtttggtttttatgg	Protospacer
********************************

2. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to position: 1955423-1955454, mismatch: 0, identity: 1.0

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
ccttcgtggcgcgggcggtttggtttttatgg	Protospacer
********************************

3. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to position: 1226743-1226774, mismatch: 1, identity: 0.969

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
ccttcatggcgcgggcggtttggtttttatgg	Protospacer
*****.**************************

4. spacer 3.1|2048770|26|CP026112|CRISPRCasFinder matches to position: 2048009-2048034, mismatch: 2, identity: 0.923

cgccctccggatgccagcgaaaaccc	CRISPR spacer
cgccctccggatgccagcgcaaaacc	Protospacer
******************* *** **

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	895576-895611	3	0.917
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	895752-895787	3	0.917
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	198200-198235	3	0.917
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1855979-1856014	3	0.917
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200404-200439	3	0.917
CP026112_3	3.1\|2048770\|26\|CP026112\|CRISPRCasFinder	2048770-2048795	26	GU903191	Escherichia phage vB_EcoM_ECO1230-10, complete genome	32039-32064	4	0.846
CP026112_3	3.1\|2048770\|26\|CP026112\|CRISPRCasFinder	2048770-2048795	26	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1283723-1283748	5	0.808
CP026112_3	3.1\|2048770\|26\|CP026112\|CRISPRCasFinder	2048770-2048795	26	NC_032102	Enterobacter cloacae strain G6809 plasmid pG6809-1, complete sequence	88499-88524	5	0.808
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	726333-726368	5	0.861
CP026112_4	4.1\|2119652\|36\|CP026112\|CRISPRCasFinder	2119652-2119687	36	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	726392-726427	5	0.861
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1749012-1749043	7	0.781
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1653749-1653780	7	0.781
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1049601-1049632	8	0.75
CP026112_1	1.1\|1103891\|32\|CP026112\|CRISPRCasFinder	1103891-1103922	32	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2242603-2242634	8	0.75
CP026112_2	2.1\|1167118\|33\|CP026112\|CRISPRCasFinder	1167118-1167150	33	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2242659-2242691	9	0.727
CP026112_2	2.1\|1167118\|33\|CP026112\|CRISPRCasFinder	1167118-1167150	33	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1049600-1049632	10	0.697

1. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.917

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
gtgcttcacgcgtcgcccctgtgcgcttgcctttgc	Protospacer
**********************.**.******** *

2. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 3, identity: 0.917

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
gtgcttcacgcgtcgcccctgtgcgcttgcctttgc	Protospacer
**********************.**.******** *

3. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.917

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
gtgcttcaggcgtcgcccctgtgcgtttgcctttgc	Protospacer
******** *************.*********** *

4. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.917

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
gtacttcacgcgtcgcccctgtgcgtttgcctttgc	Protospacer
**.*******************.*********** *

5. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.917

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
gtgcttcaggcgtcgcccctgtgcgtttgcctttgc	Protospacer
******** *************.*********** *

6. spacer 3.1|2048770|26|CP026112|CRISPRCasFinder matches to GU903191 (Escherichia phage vB_EcoM_ECO1230-10, complete genome) position: , mismatch: 4, identity: 0.846

cgccctccggatgccagcgaaaaccc	CRISPR spacer
ctgcctctggatgccagcgtaaaccc	Protospacer
*  ****.*********** ******

7. spacer 3.1|2048770|26|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.808

cgccctccggatgccagcgaaaaccc	CRISPR spacer
cgtaacgcggatgccagcgaaaaccc	Protospacer
**.  . *******************

8. spacer 3.1|2048770|26|CP026112|CRISPRCasFinder matches to NC_032102 (Enterobacter cloacae strain G6809 plasmid pG6809-1, complete sequence) position: , mismatch: 5, identity: 0.808

cgccctccggatgccagcgaaaaccc	CRISPR spacer
gtccctccggatttcagcgaaaaccg	Protospacer
  ********** .***********

9. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.861

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
tcgcttcacgcgtcgcccctgtgcgtttgccgttgc	Protospacer
 .********************.******** ** *

10. spacer 4.1|2119652|36|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.861

gtgcttcacgcgtcgcccctgtacgtttgccttttc	CRISPR spacer
tcgcttcacgcgtcgcccctgtgcgtttgccgttgc	Protospacer
 .********************.******** ** *

11. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
aagtcgtggcgcggccggtttggatttttggg	Protospacer
   *********** ******** ****  **

12. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 7, identity: 0.781

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
cctcggtggcgcgggcggtttggttggcgagg	Protospacer
***. ********************  .. **

13. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
aattcgtggcgcggccggtttggattttgctt	Protospacer
  ************ ******** ****..

14. spacer 1.1|1103891|32|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ccttcgtggcgcgggcggtttggtttttatgg	CRISPR spacer
gcttcgcggcgcgggcggtttgttttgctcgt	Protospacer
 *****.*************** *** . .*

15. spacer 2.1|1167118|33|CP026112|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

ggcaaagaaaccaaactggccgcgccacgaagg	CRISPR spacer
actagaacaaccaaaccggccgcgccgcgaagc	Protospacer
. .*.*. ********.*********.*****

16. spacer 2.1|1167118|33|CP026112|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.697

ggcaaagaaaccaaactggccgcgccacgaagg	CRISPR spacer
aaagcaaaatccaaaccggccgcgccacgaatt	Protospacer
.. . *.** ******.**************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1970119 : 2035951

Staphylococcus_phage(12.0%)

tail,holin,terminase,portal,head

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT62842.1\|1970119_1971061_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AUT63844.1\|1971100_1972093_-	GlxA family transcriptional regulator	NA	NA	NA	NA
AUT62843.1\|1972211_1973117_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AUT63845.1\|1973109_1974282_-	glycine betaine/L-proline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-27	35.9
AUT62844.1\|1974729_1976442_+	dihydroxy-acid dehydratase	NA	NA	NA	NA
AUT62845.1\|1976477_1977374_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
AUT62846.1\|1977442_1977664_-	hypothetical protein	NA	NA	NA	NA
AUT63846.1\|1977838_1979137_-	type I secretion protein TolC	NA	NA	NA	NA
AUT62847.1\|1979129_1981250_-	bacitracin ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.9e-20	30.5
AUT62848.1\|1981255_1982458_-	hemolysin D	NA	NA	NA	NA
AUT63847.1\|1982528_1983482_-	hypothetical protein	NA	NA	NA	NA
AUT62849.1\|1983674_1983893_+	hypothetical protein	NA	NA	NA	NA
AUT62850.1\|1984218_1984497_-	hypothetical protein	NA	NA	NA	NA
AUT63848.1\|1985101_1985761_+	DNA-binding response regulator	NA	NA	NA	NA
AUT62851.1\|1985860_1986868_-	rhamnose ABC transporter substrate-binding protein	NA	NA	NA	NA
AUT62852.1\|1986947_1987976_-	ABC transporter permease	NA	NA	NA	NA
AUT62853.1\|1987968_1989030_-	ABC transporter permease	NA	NA	NA	NA
AUT62854.1\|1989026_1990571_-	sugar ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.6e-15	27.1
AUT62855.1\|1990600_1991494_-	amidohydrolase	NA	NA	NA	NA
AUT62856.1\|1991540_1991867_-	L-rhamnose mutarotase	NA	NA	NA	NA
AUT62857.1\|1992016_1992985_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUT62858.1\|1993730_1994513_-	SDR family NAD(P)-dependent oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.0e-18	29.5
AUT62859.1\|1994525_1995704_-	L-rhamnonate dehydratase	NA	NA	NA	NA
AUT62860.1\|1997167_1997491_+	hypothetical protein	NA	NA	NA	NA
AUT62861.1\|1997526_1997769_+	hypothetical protein	NA	NA	NA	NA
AUT62862.1\|1997786_1998569_+	hypothetical protein	NA	NA	NA	NA
AUT62863.1\|1998664_1999210_-	hypothetical protein	NA	NA	NA	NA
AUT63849.1\|1999337_2000300_-	hypothetical protein	NA	NA	NA	NA
AUT62864.1\|2000426_2000675_-	hypothetical protein	NA	NA	NA	NA
AUT62865.1\|2000825_2001227_-	hypothetical protein	NA	NA	NA	NA
AUT62866.1\|2001301_2001604_+	hypothetical protein	NA	NA	NA	NA
AUT62867.1\|2001607_2002351_-	hypothetical protein	NA	NA	NA	NA
AUT63850.1\|2003046_2003235_+	hypothetical protein	NA	NA	NA	NA
AUT62868.1\|2003339_2003702_+	antirestriction protein	A0A2D0W9W4	Bordetella_phage	3.4e-17	42.9
AUT62869.1\|2003802_2004087_+	hypothetical protein	B2ZXT6	Ralstonia_phage	3.4e-12	44.3
AUT63851.1\|2004173_2004356_-	hypothetical protein	NA	NA	NA	NA
AUT62870.1\|2004473_2004758_+	hypothetical protein	NA	NA	NA	NA
AUT62871.1\|2004800_2005142_+	hypothetical protein	NA	NA	NA	NA
AUT62872.1\|2005249_2005513_-	hypothetical protein	NA	NA	NA	NA
AUT62873.1\|2005601_2006165_+	hypothetical protein	NA	NA	NA	NA
AUT62874.1\|2006161_2006695_+	Appr-1-p processing protein	A0A0F6SIM5	Sinorhizobium_phage	6.8e-14	33.1
AUT62875.1\|2006688_2007492_-\|tail	phage tail protein	F2Y385	Organic_Lake_phycodnavirus	9.6e-12	44.7
AUT62876.1\|2007488_2010815_-	host specificity protein J	A0A1B1IV73	uncultured_Mediterranean_phage	1.3e-155	33.3
AUT62877.1\|2010811_2011375_-\|tail	tail assembly protein	A0A2D1GNM2	Pseudomonas_phage	3.5e-16	33.9
AUT62878.1\|2011384_2012110_-	glycoside hydrolase	K7YQ35	uncultured_Mediterranean_phage	1.1e-46	43.4
AUT62879.1\|2012114_2012810_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.6e-63	51.5
AUT62880.1\|2012806_2013214_-\|tail	phage tail protein	A0A291AWW9	Escherichia_phage	1.3e-12	44.6
AUT62881.1\|2013210_2015319_-	hypothetical protein	A0A1J0GUY9	Halomonas_phage	4.6e-13	28.1
AUT62882.1\|2015504_2015834_-	hypothetical protein	NA	NA	NA	NA
AUT62883.1\|2015843_2017052_-	hypothetical protein	NA	NA	NA	NA
AUT62884.1\|2017048_2017408_-	DUF3168 domain-containing protein	NA	NA	NA	NA
AUT62885.1\|2017404_2017893_-	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	1.1e-05	31.1
AUT62886.1\|2017889_2018267_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AUT62887.1\|2018273_2018582_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
AUT63852.1\|2018578_2019004_-	carbohydrate-binding protein	H6WZL3	Escherichia_phage	1.7e-39	56.6
AUT63853.1\|2019545_2020997_-\|portal	phage portal protein	F8TVA0	EBPR_siphovirus	5.4e-122	55.2
AUT62888.1\|2020996_2021326_-	hypothetical protein	NA	NA	NA	NA
AUT62889.1\|2023421_2025248_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.3e-133	43.6
AUT62890.1\|2025204_2025684_-\|terminase	phage terminase small subunit P27 family	Q6DMU4	Streptococcus_phage	6.5e-24	43.0
AUT62891.1\|2025667_2026753_-	DNA cytosine methyltransferase	A0A2H4PAK4	Aphanizomenon_phage	2.8e-70	45.8
AUT62892.1\|2026758_2027370_-	hypothetical protein	A0A2H4JGF1	uncultured_Caudovirales_phage	8.9e-34	52.0
AUT62893.1\|2027490_2027910_-	HNH endonuclease	Q8W633	Enterobacteria_phage	1.5e-11	54.5
AUT62894.1\|2027860_2028160_-	hypothetical protein	NA	NA	NA	NA
AUT62895.1\|2028303_2028561_-	hypothetical protein	NA	NA	NA	NA
AUT63854.1\|2028972_2031993_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	1.0e-21	24.2
AUT63855.1\|2032146_2033235_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	9.0e-13	28.8
AUT62896.1\|2033239_2034334_+	anticodon nuclease	NA	NA	NA	NA
AUT62897.1\|2034340_2035951_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.5e-104	42.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026114

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026114_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026114_1

755729-755823

Orphan

Consensus_repeat	Method
TGCACAAACAACCTCACCTTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026114_1

>merge|CP026114|1|755729-755823|CRISPRCasFinder
TGCACAAACAACCTCACCTTCCTCTGATTACGACGCCGGCTGGCAATGATTTTGGCAGACCCGAGACGAGATGCACAATCAACCTCACCTTCCTA

>CP026114|1|1|755729-755823|CRISPRCasFinder
TGCACAAACAACCTCACCTTCCT	CTGATTACGACGCCGGCTGGCAATGATTTTGGCAGACCCGAGACGAGA
TGCACAATCAACCTCACCTTCCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP026114.1\|AUT66898.1\|742616_743396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212111
CP026114.1\|AUT66789.1\|743651_744716_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
CP026114.1\|AUT66791.1\|750138_750717_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372139
CP026114.1\|AUT66901.1\|753176_754154_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|275105
CP026114.1\|AUT66899.1\|744887_745553_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP026114.1\|AUT66792.1\|750744_750987_+\|hypothetical-protein	unknown	unknown	unknown
CP026114.1\|AUT66793.1\|751343_751703_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP026114.1\|AUT66790.1\|749954_750149_-\|hypothetical-protein	unknown	unknown	unknown
CP026114.1\|AUT66794.1\|754150_755194_-\|plasmid-partition-protein-A	unknown	unknown	gnl\|CDD\|224113
CP026114.1\|AUT66900.1\|745937_748226_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
CP026114.1\|AUT66898.1\|742616_743396_-\|hypothetical-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.69066e-113
CP026114.1\|AUT66789.1\|743651_744716_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.73226e-59
CP026114.1\|AUT66791.1\|750138_750717_+\|hypothetical-protein	gnl\|CDD\|372139	pfam12482, DUF3701, Phage integrase protein. This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with pfam00589.	7.37707e-19
CP026114.1\|AUT66901.1\|753176_754154_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.54245e-42
CP026114.1\|AUT66899.1\|744887_745553_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	8.20929e-10
CP026114.1\|AUT66793.1\|751343_751703_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.87418e-09
CP026114.1\|AUT66900.1\|745937_748226_-\|GGDEF-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.43416e-103
CP026114.1\|AUT66794.1\|754150_755194_-\|plasmid-partition-protein-A	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.55685e-40

>CP026114.1|AUT66794.1|754150_755194_-|plasmid-partition-protein-A
MCNISHSQVQYLATKSDGELPPGTAAGTGRTRTFTLEEARIWVQKVSDIYQTPLVTGTREPEGKIVITAQLKGGSAKTTTTMCLAQGLTLRGRKVLVVDLDPQASLSELCGLYAEKDVTPDDTVLPYIYDQEVDGGLEARVQSTYWDGLDVIPAHTELIGAEFHLPAMQKMKPGFRFWTVLRQGLEPLRKRYDYILMDTSPSLSYLNLNALLAADAMVMPMVPENLDFISSLSFWRLFSDVSKSFIKYEQDKKYDFISLMLSRVDYGRTSSAPIVRAWAQSAYESWLHSIEVPASSVMSTGALAFSTVFDVSSTHSAAKSLQRVRQPLVDYCRWVDEIYAEKWRNAQ
>CP026114.1|AUT66901.1|753176_754154_-|chromosome-partitioning-protein-ParB
MSNMREQLLAKTSGIRATSSIKEDEVKRSNRTQTAPGLAGALAVAQLRVQELESTGAATQLAVSDIVPNPWQPRRVFNEARLSELAESIREVGLMQPIVVRRSDDVYQIVAGERRWRAHKMVGLDAVKAVVVECSDADMAVLALVENVSRDDLSDYEIAMSIRQTEKEFPDRKRMAEALGMSRSGLYQFLSFENLPDFIRKDLDIQPRLLGGTAAQAIVTAIRKYGDDGVNAAKELWPLVVKGDMDQGKVAAAIKALATRRTTTTDSASERSIDKFFAGKEHAGSITKDINGITVKIRAGVLTDAQETQIRELISQMFHAHPKPN
>CP026114.1|AUT66793.1|751343_751703_+|site-specific-integrase
MHAADRASWYSIHRPSQNEPTTDTRRASPRLQAHRYARRATARVAYPGGAADLRRASSHGLRHTHANHARDAGSDLRDVQTDLGHAGLSTTTHYTKGNDARRYQAVNGFFEDALSAGGT
>CP026114.1|AUT66792.1|750744_750987_+|hypothetical-protein
MLRWSIIVRRKPLSSLNTLDLDMYIKRFLADPQPAGRWVGQGKAERLDPAWRPFTKPLPGSGREIARKLLSAMRSWLIRQ
>CP026114.1|AUT66791.1|750138_750717_+|hypothetical-protein
MASTARRPSASSPRVDRKIARNAGLRVRQPAAHVRMESDLAEAPNPAHQVDCWFEPVVAARLAVAGLTIVADLLALIRRRQQRWYTSVPRLGPKGAERITGWLSLHAASQGEPSPLATTPRWQFVAGHPALARTPRLGTLIDVMPLESLQAIPLPAELDGSQGLNRGHTSTIRSRSTALSTHPWVDRRLRCG
>CP026114.1|AUT66790.1|749954_750149_-|hypothetical-protein
MDAIRVYLVAVRLERRHVVAAVQLGGRNTAPLPAQQVRGLGIARTSSGGGHRTAQGRDAPLPEM
>CP026114.1|AUT66900.1|745937_748226_-|GGDEF-domain-containing-protein
MAYAKPNEGGRSSRIWLLHLPSFALSLFWIPAGALLLILGIWIITITRIHTEKLEARSAVSEATSQVATSFVAHIDKTVHDADVAVKLVKYEYERSPSTFRLDTLKGKGLVSADTALQVTVVGPTGEVLQTTTPDVKPINLSDRPHFVAHKRDPNLGLYISQPVLGRLSHHWTLQFTRRLNNPDGSFAGVVVVSEDPNFLTTGFYHLDAVGVGGMLLVMSDNGYLLSRLAAGVSTSPIGTPASGYRAMLNAGADALTDPVDHMRRFVTYLHSTRFPVGVIVGISENNALAGYRHAKDLYLLLASVLTVVLLTAAAIITATMSRLAFARADMQHLAETDALTGLPNRYLLTESLRRCIERENSLGRLALLFVDLDNFKRINDALGHQIGDELLQNVARRLVNVSGEKSIVARVGGDEFVVLVECTDAKGVAHRMAQSIIDAFELAFGLRGNSYVMRVSIGVAVYEFGFDAAYDLLRQADLAMYAAKEKGRSANASRFHAYTPDLSVRAMRDIERQQELQYAIENREFFLEYQPIVSLDSGETQGIEALVRWRHPEKGVIAPAEFIPFAESTGFIIPIGELILETACTQLSEWREVDTRRLYMSVNVSAAQLVHGDLVNVIRRCLERHSIAARRLKVEITETAILEDSALVGRRLQELRRLGVRVMLDDFGTGYSSLSQLTNLIVDGVKIDRSFTQGVPGNRTALATFRSIVFLARNLGLSLVVEGVETEEQANWLRRFGDIEVQGFYFGRPIVPDRMRAGRAA
>CP026114.1|AUT66899.1|744887_745553_-|LuxR-family-transcriptional-regulator
MKIMGRVVPQLGGRSYTYRWLHVPDRTRAITDQRCLIGCHPGWMHAYISQQWYRKDPSLDYALRNSTSTLASDIEALGDDHRAKDVAARYGFRSAVVCPVHRPSGTVIGLLQIGNGLPQPEGERVLWQDRHRVLMRALADEVLNWHIDALRDEEASRVALDKREQAVLRLVRAGRTACNVADTLGVSERTVYDIFQKINRKLGVSHITRAVAMAIDKGLLD
>CP026114.1|AUT66789.1|743651_744716_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MNLARLGQLIRHTVLVIAFASGLADEVVYADQTWTIASDHPADTVAGRGVESFATALARQTGGALTGRIESRDMAAATDLVAAVLGDSVQVADVFAGTLASFDPIFELPTLPFMVNSVEESGRLACLAGPAYQRALSRAGLHLLFISPWPPTGLWTRQPVAAIGDIANLRVRTYDKSSAAVMGPLGAHATTLPIRDVEWQLHVGGIDAVLSSGDGAVGRSLQADLSNFSAIYYAYPVSFVVMSRARYDVLPEKTRRELDEVAMNARRAQWRSLPARIQANYAEMQRAGVVVNSTFDAELNMRLHKAGEARVREWLSRGSLGDAGIIKAFQNREAPAAQDSCPLDLIEVGGTIRG
>CP026114.1|AUT66898.1|742616_743396_-|hypothetical-protein
MCAKTIDLNVDLGEGFGHDSELLEYATSANVECGWHAGDPLTMRRVTNEAIHRGVAIGVHQSFPDRENFGRAWMTLSPDEVYAGVQYQTGALAAVVAGLGGRLAHVKPHGALYNQAEEDADIARAIVRAVRDMDVELAVFDLAGGQLVRIARDEGLVAIDEGSADRAYIREGKLVPRSYPNAVLETDVLACEQAIGMAGDGRVKTLDDTWININPKTLCLHGDGPHAVEFTRRIRASLSNAGIRALAFRATQCILGDVS

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Crispr_ID: CP026114_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026114_2

755887-755947

Orphan

Consensus_repeat	Method
TGCACAAACAACCTCACCTTCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026114_2

>merge|CP026114|2|755887-755947|CRISPRCasFinder
AGCACAATCAACCTCACCTTCAACAGATTTTCCGTTCTTGCACAATTAACCTCACCCTCCG

>CP026114|2|2|755887-755947|CRISPRCasFinder
AGCACAATCAACCTCACCTTCAA	CAGATTTTCCGTTCT
TGCACAATTAACCTCACCCTCCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026114.1\|AUT66898.1\|742616_743396_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|212111
CP026114.1\|AUT66789.1\|743651_744716_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270320
CP026114.1\|AUT66791.1\|750138_750717_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372139
CP026114.1\|AUT66901.1\|753176_754154_-\|chromosome-partitioning-protein-ParB	unknown	unknown	gnl\|CDD\|275105
CP026114.1\|AUT66899.1\|744887_745553_-\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP026114.1\|AUT66792.1\|750744_750987_+\|hypothetical-protein	unknown	unknown	unknown
CP026114.1\|AUT66793.1\|751343_751703_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP026114.1\|AUT66790.1\|749954_750149_-\|hypothetical-protein	unknown	unknown	unknown
CP026114.1\|AUT66794.1\|754150_755194_-\|plasmid-partition-protein-A	unknown	unknown	gnl\|CDD\|224113
CP026114.1\|AUT66900.1\|745937_748226_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923

Protein	Function_ID	Function_description	E-value
CP026114.1\|AUT66898.1\|742616_743396_-\|hypothetical-protein	gnl\|CDD\|212111	cd10800, LamB_YcsF_YbgL_like, Escherichia coli putative lactam utilization protein YbgL and similar proteins. This subfamily of the LamB/YbgL family is represented by the Escherichia coli putative lactam utilization protein YbgL. Although their molecular function of member of this subfamily is unknown, they show high sequence similarity to the Aspergillus nidulans lactam utilization protein LamB, which might be required for conversion of exogenous 2-pyrrolidinone to endogenous GABA.	5.69066e-113
CP026114.1\|AUT66789.1\|743651_744716_-\|C4-dicarboxylate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270320	cd13602, PBP2_TRAP_BpDctp6_7, Substrate-binding domain of a pyroglutamic acid binding DctP subfamily of the tripartite ATP-independent periplasmic transporters; contains the type 2 periplasmic binding protein fold. DctP6 and DctP7 groups of the TRAP transporters that involved in pyroglutamic acid transport. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.73226e-59
CP026114.1\|AUT66791.1\|750138_750717_+\|hypothetical-protein	gnl\|CDD\|372139	pfam12482, DUF3701, Phage integrase protein. This domain family is found in bacteria, and is approximately 100 amino acids in length. The family is found in association with pfam00589.	7.37707e-19
CP026114.1\|AUT66901.1\|753176_754154_-\|chromosome-partitioning-protein-ParB	gnl\|CDD\|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	2.54245e-42
CP026114.1\|AUT66899.1\|744887_745553_-\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	8.20929e-10
CP026114.1\|AUT66793.1\|751343_751703_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.87418e-09
CP026114.1\|AUT66900.1\|745937_748226_-\|GGDEF-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	2.43416e-103
CP026114.1\|AUT66794.1\|754150_755194_-\|plasmid-partition-protein-A	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.55685e-40

>CP026114.1|AUT66794.1|754150_755194_-|plasmid-partition-protein-A
MCNISHSQVQYLATKSDGELPPGTAAGTGRTRTFTLEEARIWVQKVSDIYQTPLVTGTREPEGKIVITAQLKGGSAKTTTTMCLAQGLTLRGRKVLVVDLDPQASLSELCGLYAEKDVTPDDTVLPYIYDQEVDGGLEARVQSTYWDGLDVIPAHTELIGAEFHLPAMQKMKPGFRFWTVLRQGLEPLRKRYDYILMDTSPSLSYLNLNALLAADAMVMPMVPENLDFISSLSFWRLFSDVSKSFIKYEQDKKYDFISLMLSRVDYGRTSSAPIVRAWAQSAYESWLHSIEVPASSVMSTGALAFSTVFDVSSTHSAAKSLQRVRQPLVDYCRWVDEIYAEKWRNAQ
>CP026114.1|AUT66901.1|753176_754154_-|chromosome-partitioning-protein-ParB
MSNMREQLLAKTSGIRATSSIKEDEVKRSNRTQTAPGLAGALAVAQLRVQELESTGAATQLAVSDIVPNPWQPRRVFNEARLSELAESIREVGLMQPIVVRRSDDVYQIVAGERRWRAHKMVGLDAVKAVVVECSDADMAVLALVENVSRDDLSDYEIAMSIRQTEKEFPDRKRMAEALGMSRSGLYQFLSFENLPDFIRKDLDIQPRLLGGTAAQAIVTAIRKYGDDGVNAAKELWPLVVKGDMDQGKVAAAIKALATRRTTTTDSASERSIDKFFAGKEHAGSITKDINGITVKIRAGVLTDAQETQIRELISQMFHAHPKPN
>CP026114.1|AUT66793.1|751343_751703_+|site-specific-integrase
MHAADRASWYSIHRPSQNEPTTDTRRASPRLQAHRYARRATARVAYPGGAADLRRASSHGLRHTHANHARDAGSDLRDVQTDLGHAGLSTTTHYTKGNDARRYQAVNGFFEDALSAGGT
>CP026114.1|AUT66792.1|750744_750987_+|hypothetical-protein
MLRWSIIVRRKPLSSLNTLDLDMYIKRFLADPQPAGRWVGQGKAERLDPAWRPFTKPLPGSGREIARKLLSAMRSWLIRQ
>CP026114.1|AUT66791.1|750138_750717_+|hypothetical-protein
MASTARRPSASSPRVDRKIARNAGLRVRQPAAHVRMESDLAEAPNPAHQVDCWFEPVVAARLAVAGLTIVADLLALIRRRQQRWYTSVPRLGPKGAERITGWLSLHAASQGEPSPLATTPRWQFVAGHPALARTPRLGTLIDVMPLESLQAIPLPAELDGSQGLNRGHTSTIRSRSTALSTHPWVDRRLRCG
>CP026114.1|AUT66790.1|749954_750149_-|hypothetical-protein
MDAIRVYLVAVRLERRHVVAAVQLGGRNTAPLPAQQVRGLGIARTSSGGGHRTAQGRDAPLPEM
>CP026114.1|AUT66900.1|745937_748226_-|GGDEF-domain-containing-protein
MAYAKPNEGGRSSRIWLLHLPSFALSLFWIPAGALLLILGIWIITITRIHTEKLEARSAVSEATSQVATSFVAHIDKTVHDADVAVKLVKYEYERSPSTFRLDTLKGKGLVSADTALQVTVVGPTGEVLQTTTPDVKPINLSDRPHFVAHKRDPNLGLYISQPVLGRLSHHWTLQFTRRLNNPDGSFAGVVVVSEDPNFLTTGFYHLDAVGVGGMLLVMSDNGYLLSRLAAGVSTSPIGTPASGYRAMLNAGADALTDPVDHMRRFVTYLHSTRFPVGVIVGISENNALAGYRHAKDLYLLLASVLTVVLLTAAAIITATMSRLAFARADMQHLAETDALTGLPNRYLLTESLRRCIERENSLGRLALLFVDLDNFKRINDALGHQIGDELLQNVARRLVNVSGEKSIVARVGGDEFVVLVECTDAKGVAHRMAQSIIDAFELAFGLRGNSYVMRVSIGVAVYEFGFDAAYDLLRQADLAMYAAKEKGRSANASRFHAYTPDLSVRAMRDIERQQELQYAIENREFFLEYQPIVSLDSGETQGIEALVRWRHPEKGVIAPAEFIPFAESTGFIIPIGELILETACTQLSEWREVDTRRLYMSVNVSAAQLVHGDLVNVIRRCLERHSIAARRLKVEITETAILEDSALVGRRLQELRRLGVRVMLDDFGTGYSSLSQLTNLIVDGVKIDRSFTQGVPGNRTALATFRSIVFLARNLGLSLVVEGVETEEQANWLRRFGDIEVQGFYFGRPIVPDRMRAGRAA
>CP026114.1|AUT66899.1|744887_745553_-|LuxR-family-transcriptional-regulator
MKIMGRVVPQLGGRSYTYRWLHVPDRTRAITDQRCLIGCHPGWMHAYISQQWYRKDPSLDYALRNSTSTLASDIEALGDDHRAKDVAARYGFRSAVVCPVHRPSGTVIGLLQIGNGLPQPEGERVLWQDRHRVLMRALADEVLNWHIDALRDEEASRVALDKREQAVLRLVRAGRTACNVADTLGVSERTVYDIFQKINRKLGVSHITRAVAMAIDKGLLD
>CP026114.1|AUT66789.1|743651_744716_-|C4-dicarboxylate-ABC-transporter-substrate-binding-protein
MNLARLGQLIRHTVLVIAFASGLADEVVYADQTWTIASDHPADTVAGRGVESFATALARQTGGALTGRIESRDMAAATDLVAAVLGDSVQVADVFAGTLASFDPIFELPTLPFMVNSVEESGRLACLAGPAYQRALSRAGLHLLFISPWPPTGLWTRQPVAAIGDIANLRVRTYDKSSAAVMGPLGAHATTLPIRDVEWQLHVGGIDAVLSSGDGAVGRSLQADLSNFSAIYYAYPVSFVVMSRARYDVLPEKTRRELDEVAMNARRAQWRSLPARIQANYAEMQRAGVVVNSTFDAELNMRLHKAGEARVREWLSRGSLGDAGIIKAFQNREAPAAQDSCPLDLIEVGGTIRG
>CP026114.1|AUT66898.1|742616_743396_-|hypothetical-protein
MCAKTIDLNVDLGEGFGHDSELLEYATSANVECGWHAGDPLTMRRVTNEAIHRGVAIGVHQSFPDRENFGRAWMTLSPDEVYAGVQYQTGALAAVVAGLGGRLAHVKPHGALYNQAEEDADIARAIVRAVRDMDVELAVFDLAGGQLVRIARDEGLVAIDEGSADRAYIREGKLVPRSYPNAVLETDVLACEQAIGMAGDGRVKTLDDTWININPKTLCLHGDGPHAVEFTRRIRASLSNAGIRALAFRATQCILGDVS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP026111

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CRISPR-Cas detection and classification

Crispr_ID: CP026111_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026111_1

1261064-1261158

Orphan

Consensus_repeat	Method
CGAAGGCAAAGCGCGGATGCCAGCGAAAACGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026111_1

>merge|CP026111|1|1261064-1261158|CRISPRCasFinder
CGAAGGCAAAGCGCGGATGCCAGCGAAAACGCAAGCAAATCAAACGGCGACGCGTGAAGCGCGAAGGCAAAGCGCGGATGCCAGCGAAAAGCAAA

>CP026111|1|1|1261064-1261158|CRISPRCasFinder
CGAAGGCAAAGCGCGGATGCCAGCGAAAACGCAA	GCAAATCAAACGGCGACGCGTGAAGCG
CGAAGGCAAAGCGCGGATGCCAGCGAAAAGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026111.1\|AUT59126.1\|1244620_1245781_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
CP026111.1\|AUT59132.1\|1253560_1256260_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
CP026111.1\|AUT61091.1\|1268448_1268976_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	unknown	unknown	gnl\|CDD\|319971
CP026111.1\|AUT59136.1\|1262756_1263932_+\|D-alanyl-D-alanine-endopeptidase	unknown	unknown	gnl\|CDD\|236952
CP026111.1\|AUT59133.1\|1256342_1258004_+\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
CP026111.1\|AUT59130.1\|1250115_1250760_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|226932
CP026111.1\|AUT59140.1\|1267314_1267839_-\|hypothetical-protein	unknown	unknown	unknown
CP026111.1\|AUT59138.1\|1264992_1265715_+\|(Fe-S)-binding-protein	unknown	unknown	gnl\|CDD\|223325
CP026111.1\|AUT59131.1\|1250756_1253273_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226654
CP026111.1\|AUT59135.1\|1261399_1261984_-\|Phasin-(PHA-granule-associated-protein)	unknown	unknown	gnl\|CDD\|130900
CP026111.1\|AUT61089.1\|1248171_1249470_-\|DUF3300-domain-containing-protein	unknown	unknown	gnl\|CDD\|378701
CP026111.1\|AUT59128.1\|1246776_1247010_+\|hypothetical-protein	unknown	unknown	unknown
CP026111.1\|AUT59139.1\|1265794_1267207_+\|iron-sulfur-cluster-binding-protein	unknown	unknown	gnl\|CDD\|224062
CP026111.1\|AUT59127.1\|1245892_1246750_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184559
CP026111.1\|AUT59142.1\|1269678_1270902_+\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
CP026111.1\|AUT61090.1\|1268114_1268342_+\|hypothetical-protein	unknown	unknown	unknown
CP026111.1\|AUT59134.1\|1258269_1260330_+\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
CP026111.1\|AUT59137.1\|1263997_1264804_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP026111.1\|AUT59129.1\|1247092_1248091_-\|DUF2950-domain-containing-protein	unknown	unknown	gnl\|CDD\|371539
CP026111.1\|AUT59141.1\|1269086_1269611_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|273927

Protein	Function_ID	Function_description	E-value
CP026111.1\|AUT59126.1\|1244620_1245781_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	5.47994e-16
CP026111.1\|AUT59132.1\|1253560_1256260_+\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
CP026111.1\|AUT61091.1\|1268448_1268976_+\|low-molecular-weight-phosphotyrosine-protein-phosphatase	gnl\|CDD\|319971	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase. Low molecular weight protein tyrosine phosphatases (LMW-PTP) are a family of small soluble single-domain enzymes that are characterized by a highly conserved active site motif (V/I)CXGNXCRS and share no sequence similarity with other types of protein tyrosine phosphatases (PTPs). LMW-PTPs play important roles in many biological processes and are widely distributed in prokaryotes and eukaryotes.	1.53789e-72
CP026111.1\|AUT59136.1\|1262756_1263932_+\|D-alanyl-D-alanine-endopeptidase	gnl\|CDD\|236952	PRK11669, pbpG, D-alanyl-D-alanine endopeptidase; Provisional.	3.48347e-97
CP026111.1\|AUT59133.1\|1256342_1258004_+\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
CP026111.1\|AUT59130.1\|1250115_1250760_-\|DNA-binding-response-regulator	gnl\|CDD\|226932	COG4566, TtrR, Response regulator [Signal transduction mechanisms].	3.7751e-91
CP026111.1\|AUT59138.1\|1264992_1265715_+\|(Fe-S)-binding-protein	gnl\|CDD\|223325	COG0247, GlpC, Fe-S oxidoreductase [Energy production and conversion].	5.34663e-57
CP026111.1\|AUT59131.1\|1250756_1253273_-\|PAS-domain-S-box-protein	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	1.36493e-43
CP026111.1\|AUT59135.1\|1261399_1261984_-\|Phasin-(PHA-granule-associated-protein)	gnl\|CDD\|130900	TIGR01841, hypothetical_protein, phasin family protein. This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.	5.89493e-14
CP026111.1\|AUT61089.1\|1248171_1249470_-\|DUF3300-domain-containing-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	3.71468e-127
CP026111.1\|AUT59139.1\|1265794_1267207_+\|iron-sulfur-cluster-binding-protein	gnl\|CDD\|224062	COG1139, COG1139, Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion].	0
CP026111.1\|AUT59127.1\|1245892_1246750_-\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184559	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase.	0
CP026111.1\|AUT59142.1\|1269678_1270902_+\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
CP026111.1\|AUT59141.1\|1269086_1269611_+\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|273927	TIGR02010, Putative_HTH-type_transcriptional_regulator, iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	8.45478e-83
CP026111.1\|AUT59134.1\|1258269_1260330_+\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
CP026111.1\|AUT59137.1\|1263997_1264804_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	2.22192e-71
CP026111.1\|AUT59129.1\|1247092_1248091_-\|DUF2950-domain-containing-protein	gnl\|CDD\|371539	pfam11453, DUF2950, Protein of unknown function (DUF2950). This is a bacterial family of uncharacterized proteins.	2.65133e-145

>CP026111.1|AUT59134.1|1258269_1260330_+|dihydrolipoyl-dehydrogenase
MSLVEVKVPDIGDFKDVDVIEVNIKPGDTIEKEQSLLTLETDKASMEVPSEAAGTVKEVRVKAGDKVSQGTVIATVETSGEAKAAKEPEKAAPAAAPAAAPAASGGSVQEIKVPDIGDYKDVPVIEVAVKVGDRVEKEQSLVTLESDKATMDVPSPAAGVVKELKVKVGDNVSEGSVLLLLEGEGAAAAPAPKAAPAPAPAAAAAPAPQAGSYSGSADIECDMLVLGAGPGGYSAAFRSADLGMKTVLVERYATLGGVCLNVGCIPSKALLHTALVIDEAAALGSHGISFGKPQIDLDKLRDFKSGVVKKLTGGLAGMAKARKVEVVTGVGTFVDPHHMEVQGESGKKVVKFKQAIIAAGSQAVKLPFIPEDPRVVDSTGALELRQIPKRMLVIGGGIIGLEMATVYATLGAQIDVVEMLDGLMAGADRDLVKVWEKFNSKRFTNVMLKTKTTGAEAKPDGIYVTFEGEKAPAEPQRYDLVLVAVGRSPNGKKIGADKAGVAVTDRGFIEVDKQMRTNVPHIFAIGDVVGQPMLAHKAVHEGHVAAEAAHGEKAYFDALQIPSVAYTDPEVAWAGKTEDQCKAEGIKYGKAVFPWAASGRAIANGRDEGFTKLIFDEETHRVIGGGIVGLNAGDLISEVCLAVEMGADATDIGKTIHPHPTLGESVGMAAELYEGVCTDLPPQKKK
>CP026111.1|AUT59133.1|1256342_1258004_+|dihydrolipoyllysine-residue-acetyltransferase
MSQAIEVKVPDIGDYKDIPVIEVLVKAGDTVEKEQSLVTLESDKATMDVPSPASGTVKEVKVKLGDTVSEGTLIVLLDGVGGAAAAKPAQGNGAAAPAAAPAPAPAPAPAPAAKGGGVQEVKVPDIGDYKDVPVIEVGVKVGDRVEKEQSLVTLESDKATMDVPSPAAGIVKEIKVKVGDNVSEGTLIVLLEGDSGGAAAPTPAPPAAKHEEKPSDAPAAPSPAPAQPSALAQAPVIPAGEGGAYRVSHASPSVRKFARELGVDVSRVAGTGPKGRITQDDVTAFVKGVMTGQRSAPAAAAAPAGAGGGELGLLPWPKIDFTKFGPIDPKPLSRIKKISGANLHRNWVMIPHVTNNDEADITELEELRVKLNKENEKSGVKFTMLAFVIKAVVAALKKFPTFNTSLDGDNLVYKQYYNVGFAADTPNGLVVPVIRDADKKGLVDIAKEMAELSKLAREGKLKPDQMQGGCFSISSLGGIGGTNFTPIINAPEVAILGLSRGAMKPVWDGKQFVPRLMLPMSLSYDHRVIDGAEAARFNAYLGSILADFRRVIL
>CP026111.1|AUT59132.1|1253560_1256260_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSAVPDEVLKYVANAKDDNDPQETAEWLEALDGVISAVGPDRAHYLIEKQIEFARVHGEHLPFSANTPYINTIPVANQAKIPGDQDVEHRIRSYTRWNAMAMVLRAGKETNVGGHIASFASAATLYDVGFNHFWHAPSKEHGGDLVFVQGHSSPGVYSRAFLLGRLTDKQLDNFRQEVGGEGISSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFMKYLQARGIAKTDGRKVWAFLGDGETDEPESLGAIGMAGRERLDNLVFVINCNLQRLDGPVRGNGKIIQELESEFRGAGWNVIKVIWGSRWDALFARDKTGALMRRMMEVVDGEYQTYKSESGAFVREHFFNTPELKALVSDWSDDDVWNLNRGGHDPHKIYAAFKEATQSKGQPTVILAKTIKGYGMGEAGQAMNITHQQKKMQVESLKQFRDQFRLPISDDEITHVPYLTFEEGSKELEYMRARRQELGGYLPARRQKAESLPVPGLDAFEPLLKGTGEGREISTTMAFVRILNIVLKDKAIGKRVVPIVPDESRTFGMEGLFRQIGIWNQDGQKYVPEDSDQLMFYKESTTGQILQEGINEAGGMSDWIAAATSYSTHGEIMIPFYIFYSMFGMQRIGDLVWAAGDMRSRGFLLGGTAGRTTLNGEGLQHEDGHSLLWAASVPNCISYDPTFGYELAVIMQDGLRRMVQEQEDVFYYVTVMNENYEHPAIPQGEHVAKDIIKGMYAFRKGAANAKAPRVQLMGAGTIFNEVIAAADLLKNDWGVESDLWSVPSFTELAREGHEVQRQNLLNPLGEKKLSHVETLLKDAKGPVIASTDYVRALVDQIRAFVPQRFVVLGTDGFGRSDTREKLRHFFEVDRYWTTVAALSALADEGTIERKVVADALKKYNLDPSKPNPMTV
>CP026111.1|AUT59131.1|1250756_1253273_-|PAS-domain-S-box-protein
MLTDRLFARSARSAGTSADSSPSRWHHGPWWSNSYLLTPLLSILVFLVVMSLILWSLNRREQQQQEDTLYRNVAWAQQQIRLSMTGAQEQLQALARDLVSGRADPHSFQVSTADIMQGHPEILYMNWYTSAQQPRWPNNALPVLGQRLAKPNDQQMDEAVKAAFTEAKNTRRQVYSPLMYDDVGNGYITLQTPVYRDRDFLGTVAAVFSVEGILKRDIPPELSAKYKISIIDINNRELATTSTRPRLPRDAYYDLPLDPPGQGVSVRVYAYPQMTNFTNNTLVWLVAGLSCFVLWSLWSLWKHTRQRFEAQQALYAEAFFRRAMENSVLIGMRVLDMHGRITHVNPAFCRMTGWDESDLVSKNAPFPYWPRDSYPEMQRQLDMTLRGKAPSSGFELRVRRKDGSLFHARLYVSPLIDSSGRQTGWMSSMTDITEPKRAREELAAAHERFTTVLESLDAAVSVLAADEAELLFANRYYRHLFGIRPDGHLELAGGGGFDNSAASSDSIDMVDAFAGLPAAALTEGSADAQEVYVQGIQKWFEVRRQYIQWVDGHLAQMQIATDITTRKQAQELARQQDEKLQHTSRLMTMGEMASSLAHELNQPLAAINNYCSGAVALVKSGRTTPDNLLPVLEKTAQQAVRAGMIIKRIREFVKRSEPKRQATRVADIVADAVGLAEIEVRKRRIRIVTDMRQRLPVIYVDPVLIEQVLVNLLKNAAEAMYDARPNAVDPVIRLVVKLDSGFVCLSVVDQGPGVDEATAERLFEPFYSTKSDGMGMGLNICRSIIESHRGRLWVVNNVESDGHVTGATFHCSLPIGEPDGPSNGGSEAPTPQTVTGEL
>CP026111.1|AUT59130.1|1250115_1250760_-|DNA-binding-response-regulator
MNTPVTTQETVFVVDDDEAVRDSLRWLLEANGYRVQCFSSAEQFIDAWQPHQHPGQIACLILDVRMSGMSGLELQERLIADNTLLPIIFVTGHGDVPMAVSTMKKGAMDFIEKPFDEAELRKLVERMLDKARSESSSVQQQRAAAERLGKLTAREHQVLERIIAGRLNKQIADDLGISIKTVEAHRANIMEKLNVNTVADLLRLALSNKPQQAQ
>CP026111.1|AUT61089.1|1248171_1249470_-|DUF3300-domain-containing-protein
MPLAAGFVAPTVAVAQTPAKVSNQQLDSLTAPIALYPDALLAQVLMASTFPQDVSAAAAWSKANSQYKGDDAVKAVASEPWDPSVQSLVAFPQVLATMDSKPDWVTQIGNAFLAQPNDVMDSVQRLRKQAQSAGNLKSSEQQKVIVEQSTIQIVPANPQVVYVPTYNPTVVYGTWPYPAYPPVYMPPPPGYAIATGFMTGLAFGAGVAVANSLWGGFNWNNHDVNINVNRYNNINVNNRINSNTSTANWNRNESINRNNANFNRNNANLNNSNLAAQRDQFRGRDASRAQAEQTLQNRTGQNLSGSASQRVQNIHQGGANEGNLRNSAQNLNRDNALRGSGDAAGSRQELQRGQASRQSLANNGGANNRLGSGGGGQQFNGAQAGGGRAGGGGGEGFQRGGGGGGGGGFQHGGGGGGGGFQRGGGGGGFHRR
>CP026111.1|AUT59129.1|1247092_1248091_-|DUF2950-domain-containing-protein
MTGKSIRVSTRHSIRAAIGSTRSTPRASHLVGRFASHPALSHALAALAAVAMFAAAQPAAAQAVYPTPDAAASAFANALATSDHPAMEKVLGKNYGRYIPTTNIGEDDIYAFLGQWAKGHRIVDDPAPHAGRKSVHLAVGDDGWTLPIPIVQTARGWQFNTPAATDEMLTRRIGRNERAAVLTSLAYVDAQNDYRKQMQHYAQKFISSPGKQDGLYWPTTAGEPESPLGPLAATMPHQIAPGEAYYGYHYRILTSQGAKADGGAQNYVQDGVLSKGFGLVAWPAEYGKTGVMSFIVNQNGQVYEKNLGPQTPRVASTITTFNPDSSWQATQP
>CP026111.1|AUT59128.1|1246776_1247010_+|hypothetical-protein
MRAGQAGAGRVITLPRMPRVVLLRMRSRRSLKADAANRTDGARRLERVACRKAHGAKTAPQRSSTLYRSGNATDDQG
>CP026111.1|AUT59127.1|1245892_1246750_-|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MTAKLIDGTALSKTLRANVATRAAALTARGHQPGLAVVLVGDNPASEVYVRNKVKACEDNGLFSSYDRYPATMTEADLLARIDALNRDPKIHGILVQLPLPKHIDSHKVIEAIAPEKDVDGFHVANAGALMTGKPLFRPCTPYGVMKMFEAYGIELKGANAVVIGRSNIVGKPMALLLLEANATVTICHSKTRNITAFTRDADVVVVATGLRNTLTADMVKPGATVIDVGMNRDENGKLCGDVDFANVKEVAGHITPVPGGVGPMTITMLLVNTIEAAERAAGNT
>CP026111.1|AUT59126.1|1244620_1245781_+|acyltransferase
MTPHPQTLSGALARDANNFDLVRLVAACAVVYCNAYVIQQTHAGDGITAALGFGGAGYLGVYAFFLMSGLLVSASFERQRSVPRFVAQRLARLLPAVVGASLVAIFVVGPIFTTLALHDYFTSGATWRNLDYFSTLVMKRGWTLPGVFEHNRFVRDICAPLWTLPLQVYCYVLVLFMGMFGLLSTRWRSVIAVLIAAAVFTVRVRLPDLQIGWRDFSGNAGGYAFFPEPFFFLGMLLYGWRERINLSGLTACGLLLVFLVFRDTAGAQALFYIAFVYGLLWMSVTPMLRGWVPRHDYSYAIYLYGFMVQQCVAALAPRMPPMLSIVVSAPFIFALAALSSRWIERPVMSWCRGRIARSEAHQQERRNAPEVPPMRAADLAVRWPPL
>CP026111.1|AUT59135.1|1261399_1261984_-|Phasin-(PHA-granule-associated-protein)
MTLLTPEQFAAAQKANLETLFGLTSKAFEGVEKLVELNIQVVKSTIAEGQENAQRALSVKDAQELLALQASLTQPVAEKVLSYGRHLYEIASATQAEFARVAEAQYEEQNKKVQALVENVAKNAPAGSETAVAVIKSAITAANTTYETVHKATKQAVEIAESNFNAAATAASKAASQAAAQASRTAASAKKAAV
>CP026111.1|AUT59136.1|1262756_1263932_+|D-alanyl-D-alanine-endopeptidase
MKTDMFSSLKVMHGAALSTALSVAASVVIAAAFAAPVDAFAASATAPAKSAKAGKKPSKKAAAEQVSSKSSKAAKDVKAAAKDDDDQPRTVSKKRRVSYTVNGRHHSVVRRVAFEPRQPSVGTAFGLHETPDALMLRSSVAYVVDQNTSESLFDKNSRAVVPIASITKLMTAMVVLDSKAAMTEQVEVTDEDRDYEKNTGSRLSVGSVLSREDMLHIALMASENRAAAALSRYFPGGRPAFMAAMNAKAKSLGMTDTHFENPTGLTSQNVSSARDLVKMVNAAYQYPMIRRFSTDRSYEVYTGKRTIAYNSTNALVRNPTWDIGLQKTGFINEAGECLVMQATIHDRPMIMVLLDSSGKYSRFADAQRLRTWLDNGGEQRITSADANGAGT
>CP026111.1|AUT59137.1|1263997_1264804_-|IclR-family-transcriptional-regulator
MSDTNPDPKTSIQVIERMMRLLDALAAHSDPVSLKELAQRTELHPSTAHRILNDMVTCRLVDRSDPGTYRLGMRLLELGNLVKARLSVRDAALMPMRELHRLTGQTVNLSVRQGDEIVYIERAYSERSGMQVVRAIGGRAPLHLTSVGKLFLAADESTRVRAYATRTGLSGHTQNSITDLTKLERELSHVRQQACARDNEELELGVRCIAAGIYDDTGKLVAGLSLSAPADRLQDSWLGQLSKTALVISESLGYHPQVQHASASAHTV
>CP026111.1|AUT59138.1|1264992_1265715_+|(Fe-S)-binding-protein
MRVGFFVTCLIDLMRPEIGFSAIKLIERAGYEVFVPPAQTCCGQPAYNSGDRRIARDLAEKTLREFEQYDYVVVPSGSCGGMIRAHYGDLFADDPELMGRFARLRPKVYELTDFLATVAKVELTPGNFQGPVTYHDSCSGLRELGVKQQPRALLAQAGVAVTEMKDCEHCCGFGGTFAVKFGDISTAIVDEKCANIQASGTQAVVLGDLGCMLNIEGRLRRTGDTTTRVLHIAQVLAGDA
>CP026111.1|AUT59139.1|1265794_1267207_+|iron-sulfur-cluster-binding-protein
MQVQTMQFKARAGQKLADQRLQQNLTKLSTKFVSARASAMLAIDFPATRAALKERRNRALENLDVWLETFEREATRRGVTVLFAETTQDAAKLVADIARKHDVKKVIKTKSMVSEEMRLNEVLGQMGVQSIETDLGEYILQINDNEPPSHIIAPVVHKDKEEIADLFAKTHQKPRLTEIPEMTREAREVLRPHFMTADMGVTGGNFVIAETGSVALVTNEGNEGMCTVMPRVHVAVTGIEKVLPTLEDLATAMRLLPRSATGQDVSNYFSVLTGPRRAGDQDGPEHMYVVLVDGGRTGLIGGDFQEMLRCIRCGACMNHCPVYQKVGGHTYGWVYPGPMGSVLTPSYVGIEKALDLPQAATLCGECNSVCPVGIPLSDLLRKLRERQVERHLRPWQERYGLAVWGYLAMHPTAYRLFTKVAVRILEKMGGNRKSIAKLPLGGGWTDTREMPAPVGRTFRELYAASKTHIG
>CP026111.1|AUT59140.1|1267314_1267839_-|hypothetical-protein
MKRLIPSFAPAAVALCAVAALSGCVAYPYGGQPAGYGYNDGYYDGYGAPVPAYGYAEPPVQSSLFLGFGGGGYSGSNYDRRYWGGRGYDHGNYNRGDRGNWNGNGNGRGGNGNNGGPPRGQPPQAGNPPPPNPGGNSGGGYHGNRQPVQAGSGQQQGGGNRGGQAWNNEGGRPH
>CP026111.1|AUT61090.1|1268114_1268342_+|hypothetical-protein
MKKKISVYWPIAIVVPLAAIAYLHLYNGAATQSPLAAERVSAELARTVSYGFVGGEAAMPADVLPATARMSAQPM
>CP026111.1|AUT61091.1|1268448_1268976_+|low-molecular-weight-phosphotyrosine-protein-phosphatase
MKTVAICFVCLGNICRSPTAEGVMRHLLADAKLADRVIVDSAGTGDWHIGEAPDDRAQRAAKNRGYDLSIFRGRQITAVDFERFDLIIAMDDKNVSALRQICPAAQRDKIRLLMEFATDADAPDASGAEKRAPGFDAREVVDPYFGGGEGFEIVLDQCEAACRGLIAALRPQLTP
>CP026111.1|AUT59141.1|1269086_1269611_+|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTTKGRFAVTAMIDLALRQEQGPVTLAGISQRQHISLSYLEQLFGKLRRHEIVESVRGPGGGYNLARRAEDVTVADIIIAVDEPLDATQCGGKGSCEGTKHHDGHCMTHELWSTLNQKMVEYLDSVSLKDLVDQQRSREGSTAVLRDRRTEAPAVEPRAVPKGPNSVFNMAG
>CP026111.1|AUT59142.1|1269678_1270902_+|IscS-subfamily-cysteine-desulfurase
MNNDIPHLPIYMDYSATTPVDPRVVDKMIPYLREQFGNPASRSHAYGWDAERAVEEARENVAALVNADPREIIWTSGATESDNLAIKGAAHFYKGKGKHIITVKTEHKAVLDTTRELEREGYEVTYLDVKDDGLIDLDVFKAALRPDTILVSVMHVNNEIGVVQDIETIGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLATHQIVGMGEAFRIAREEMATENERVRALRDKLLRGLKEIEETYVNGDMEKRVPHNLNISFNFVEGESLIMAVKDVAVSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTVGRFTTEQDVDYVINLLKSKIAKLRDLSPLWEMHKDGIDISTIQWAAH

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Crispr_ID: CP026111_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026111_2

1951025-1951169

Orphan

Consensus_repeat	Method
GCGTTTGCGCTGGCATCCGCGATT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP026111_2

>merge|CP026111|2|1951025-1951169|CRISPRCasFinder
GCGTTTACGCTGGCATCTGCGCTATGCCTTCGTGCTTCAAGCGTCGCCATTCGGTGTTTTAGCGTTTGCGCTGGCATCCGCGATTTGCCTTCGCGGCGCGAGTGTTGGTTTGCGTTTGCTCGTGTTTGCGCTGGCATCCGCGATT

>CP026111|2|2|1951025-1951169|CRISPRCasFinder
GCGTTTACGCTGGCATCTGCGCTA	TGCCTTCGTGCTTCAAGCGTCGCCATTCGGTGTTTTA
GCGTTTGCGCTGGCATCCGCGATT	TGCCTTCGCGGCGCGAGTGTTGGTTTGCGTTTGCTC
GTGTTTGCGCTGGCATCCGCGATT

Protein	Signature genes	Signature genes Name	Protein_function
CP026111.1\|AUT59652.1\|1944419_1947017_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
CP026111.1\|AUT59662.1\|1959322_1959694_+\|4-amino-4-deoxy-L-arabinose-transferase	unknown	unknown	gnl\|CDD\|185011
CP026111.1\|AUT61157.1\|1943841_1944285_+\|DUF937-domain-containing-protein	unknown	unknown	gnl\|CDD\|226276
CP026111.1\|AUT61155.1\|1934474_1940528_+\|alpha-2-macroglobulin	unknown	unknown	gnl\|CDD\|225248
CP026111.1\|AUT59654.1\|1948113_1948674_+\|Globin	unknown	unknown	gnl\|CDD\|381257
CP026111.1\|AUT59659.1\|1953499_1954831_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
CP026111.1\|AUT59664.1\|1961132_1962182_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|182669
CP026111.1\|AUT59661.1\|1956707_1957082_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240187
CP026111.1\|AUT59665.1\|1962178_1963114_+\|formyltransferase	unknown	unknown	gnl\|CDD\|235902
CP026111.1\|AUT59656.1\|1949315_1949573_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|224888
CP026111.1\|AUT59655.1\|1948824_1949295_-\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|238385
CP026111.1\|AUT61156.1\|1943137_1943686_+\|competence-protein-ComE	unknown	unknown	gnl\|CDD\|378965
CP026111.1\|AUT59653.1\|1947378_1947876_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236820
CP026111.1\|AUT59666.1\|1963110_1964157_+\|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase	unknown	unknown	gnl\|CDD\|183375
CP026111.1\|AUT59660.1\|1954889_1956137_-\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|181738
CP026111.1\|AUT59657.1\|1949612_1950845_-\|molybdopterin-molybdenumtransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
CP026111.1\|AUT61158.1\|1957461_1959294_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
CP026111.1\|AUT59658.1\|1952020_1953469_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
CP026111.1\|AUT59663.1\|1959938_1961090_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223476
CP026111.1\|AUT59651.1\|1940540_1942955_+\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|273954

Protein	Function_ID	Function_description	E-value
CP026111.1\|AUT59652.1\|1944419_1947017_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
CP026111.1\|AUT59662.1\|1959322_1959694_+\|4-amino-4-deoxy-L-arabinose-transferase	gnl\|CDD\|185011	PRK15051, PRK15051, 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional.	1.1438e-09
CP026111.1\|AUT61157.1\|1943841_1944285_+\|DUF937-domain-containing-protein	gnl\|CDD\|226276	COG3753, COG3753, Uncharacterized protein conserved in bacteria [Function unknown].	4.73166e-18
CP026111.1\|AUT61155.1\|1934474_1940528_+\|alpha-2-macroglobulin	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	7.94784e-83
CP026111.1\|AUT59654.1\|1948113_1948674_+\|Globin	gnl\|CDD\|381257	cd08916, TrHb3_P, Truncated hemoglobins (TrHbs, 2/2Hb, 2/2 globins); group 3 (P). The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. They are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb3s include Campylobacter jejuni Ctb, encoded by Cj0465c, which may play a role in moderating O2 flux within C. jejuni.	7.03503e-43
CP026111.1\|AUT59659.1\|1953499_1954831_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
CP026111.1\|AUT59664.1\|1961132_1962182_+\|glycosyltransferase	gnl\|CDD\|182669	PRK10714, PRK10714, undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional.	4.0253e-120
CP026111.1\|AUT59661.1\|1956707_1957082_+\|hypothetical-protein	gnl\|CDD\|240187	cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.	1.06151e-58
CP026111.1\|AUT59665.1\|1962178_1963114_+\|formyltransferase	gnl\|CDD\|235902	PRK06988, PRK06988, formyltransferase.	0
CP026111.1\|AUT59656.1\|1949315_1949573_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	3.98589e-23
CP026111.1\|AUT59655.1\|1948824_1949295_-\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|238385	cd00756, MoaE, MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.	2.82235e-60
CP026111.1\|AUT61156.1\|1943137_1943686_+\|competence-protein-ComE	gnl\|CDD\|378965	pfam12836, HHH_3, Helix-hairpin-helix motif. The HhH domain is a short DNA-binding domain.	1.42522e-13
CP026111.1\|AUT59653.1\|1947378_1947876_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|236820	PRK11014, PRK11014, HTH-type transcriptional repressor NsrR.	5.51596e-43
CP026111.1\|AUT59666.1\|1963110_1964157_+\|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase	gnl\|CDD\|183375	PRK11908, PRK11908, bifunctional UDP-4-keto-pentose/UDP-xylose synthase.	0
CP026111.1\|AUT59660.1\|1954889_1956137_-\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
CP026111.1\|AUT59657.1\|1949612_1950845_-\|molybdopterin-molybdenumtransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.07774e-163
CP026111.1\|AUT61158.1\|1957461_1959294_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	7.74171e-60
CP026111.1\|AUT59658.1\|1952020_1953469_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
CP026111.1\|AUT59663.1\|1959938_1961090_+\|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein	gnl\|CDD\|223476	COG0399, WecE, Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane].	7.82605e-154
CP026111.1\|AUT59651.1\|1940540_1942955_+\|penicillin-binding-protein-1C	gnl\|CDD\|273954	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C. This subfamily of the penicillin binding proteins includes the member from E. coli designated penicillin-binding protein 1C. Members have both transglycosylase and transpeptidase domains and are involved in forming cross-links in the late stages of peptidoglycan biosynthesis. All members of this subfamily are presumed to have the same basic function. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0

>CP026111.1|AUT59657.1|1949612_1950845_-|molybdopterin-molybdenumtransferase-MoeA
MLSTADALATLLGAAAQIAGNETLPTLEAINRVLASDVISPLDVPPMNTSAMDGYAVRVAELSQGERRLPISQRIPAGHAPQPLAEGTAARIFTGATVPPGADAIVMQEQTETAGDEVTILHTPKTGEWITQQGADIHKGATILPAGTRLTPQALGLAASVGCANLDVVRRVKVAVFFTGDELTMPGEPLKPGAIYNSNRFTLTGLLHKLGCEVTDYGIVPDKLDATRKTLREAAQAHDLILTCGGVSVGEEDHVKPAVEAEGRLSMWQIAMKPGKPLAFGAIRRTAAPDTQNTGSNETFFIGLPGNPVSTFATFLLFVRPFLLRLAGVRTVTPRALSLRADFTQQKADRRNEFLRARVNAAGGLDLFPNQSSAVLTSTVWGDGLIDNPPNHAISAGETVRFIPFSELLN
>CP026111.1|AUT59656.1|1949315_1949573_-|molybdopterin-converting-factor-subunit-1
MNIQLKYFASVREALGQSDESVDVPEGIATVGDVRAWLRVRGGVWAETLAEGRALRMACNHVMTDAGTRITDGCEVAFFPPVTGG
>CP026111.1|AUT59655.1|1948824_1949295_-|molybdopterin-synthase-catalytic-subunit-MoaE
MTVRVQTEDFDLSTEVAALRAQNPKVGAVACFVGTVRDINEGETVQTMELEHYPGMTEKSLEAIVDAARERWPGTEVLIVHRVGKLMPLDQIVLVATTSKHRGNAFASCEFVMDYLKTQAPFWKKEKTESGERWVDARVADDEALARWGLKSLNSR
>CP026111.1|AUT59654.1|1948113_1948674_+|Globin
MKSDISSDIPAIERLATRYAEPTEDNIRELVYAFYDRVRADALLGPAFEQKLAGRWDEHLPKMCVFWGSLALGAKQYRGNVQQAHMPLAGLEPRHFSRWLFLFLDTVESRYEPAAAVRFMEPALRIAQSLQLSKFGWDYQIPAEQQDLLDRIAPRRRSREEHAAEHARPRGEPFPTKIIGKSRDDD
>CP026111.1|AUT59653.1|1947378_1947876_-|Rrf2-family-transcriptional-regulator
MRLTDYTDYSLRVLLYLAVRSEGLATIQDISDAYGISKNHLMKVVQRLAELGWVETVRGRNGGLRLYEHSSSLTVGEVVRAAENDFALVSCFNGTDTSGVHRECVIQSQCRLKGILESARSAFFRELDSYTIRDIAEPASPLMSLLGLKPSATIVPIVPAVSTGT
>CP026111.1|AUT59652.1|1944419_1947017_-|ATP-dependent-chaperone-ClpB
MRVDKLTTKFQEALADAQSLAVGHDNQYIEPVHLLAALVAQQDGSARSLLSRAGVHVQALQTSLADAITRLPQVRGTDGNVQIGRDLTGLLNQADKEAQKINDTYIASEMFLLAIADDKGEAGRLAREHGLSRKSLEAAIVAVRGGAQVHSQDAESQREALKKYTIDLTERARAGKLDPVIGRDDEIRRSIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPETLKGKRVLSLDMAALLAGAKYRGEFEERLKAVLNDIAKDEGQTIVFIDEIHTMVGAGKAEGAMDAGNMLKPALSRGELHCVGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEATIAILRGLQERYELHHGVDITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAASKIKMEIDSKPEEMDRLDRRRIQLKIEREAVKKEKDEASQKRLQLIEEEIERLDREYSDLEEIWTAEKAAVQGSAQLKEEIEKTRAEITRLQREGKLEKVAELQYGKLPQLDAQLKAVTKAEAEEQNNPTRPRLLRTQVGAEEIAEVVSRATGIPVSRMMQGEREKLLQIEEKLHQRVVGQDEAISAVADAIRRSRAGLSDPNRPYGSFLFLGPTGVGKTELCKALAAFLFDAEDHLIRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEIEKAHPDVFNVLLQVLDDGRMTDGQGRTVDFKNTVIVMTSNLGSQVIQSMVGQPEEAVKDAVWEEVKLHFRPEFLNRIDDVVVFHALDRSNIQSIAKIQLERVHERLAKLDMQLVVSDAALELIGKVGYDPLFGARPLKRAIQQEIENPVAKLILSGKFGPKDVIPVEVDNGKLVFDRVVH
>CP026111.1|AUT61157.1|1943841_1944285_+|DUF937-domain-containing-protein
MSLLDSLGSMLGGGNSPQGGGQAALISAALEFVNNQPGGLNGLIQRFQQNGAGDIISSWVGTGENQPIAADTLHNVLGSETVTNIAAKAGVEPSMVTGLLSQVLPHVINAATPNGEVPADGKLDAGGVSGALGALGQIAGLFGNKNA
>CP026111.1|AUT61156.1|1943137_1943686_+|competence-protein-ComE
MLKKLLMLFVALVLSLSAGFAAAVEVNSADQAALESVKGIGPAHAKAIIDERTKNGPFKDADDLANRVKGIGQKSVKNLEAAGLTINGSSAPPTGAPAKAPAGTMSKSTPAPAATTAQTPAPADAASGGKASKSKKKSTADAAAASAPAATAASAPATASDTTASKSKKSKKSKAASAASGV
>CP026111.1|AUT59651.1|1940540_1942955_+|penicillin-binding-protein-1C
MRAWTNAMSRHTPPNRPWRIAFTFVRIALCVLLLAEPLAAHALPTFDDVRAQWRSSDWLLLSRDGVPLQRTRIDKTERRGDWVALADVSPALREAIVVSEDKRFYEHSGVDWRGAAAAAWANLWNTRTRGASTVTMQLTGLLNDDRERSGQRSIAQKANQAVSALWLEHTWRKDQILEAYLNLVPFRGETIGLSALSITLFGKAPSGLDEREAAVAAALIRAPNASYAKVGERACRILRDMNAPERCANLTAFVQLAFARPAPALLSVSPDAPTLAPHFARRIASETHPVAGARVTSTLDAKLQRFASDTLTRTLIELNAPAHPRNVHDGAVVVLDNATGEALAWVGSSGGLSGARDVDAVLARRQAGSTLKPFLYAQAIDERRLTTASLLDDAPLDLAAGGGLYIPQNYDKDFKGWVSVRTALGSSLNVPAVRTLVMVTPHRFAKTLTALGLPLEQSGDYYGYSLALGSADVTLLSLTNAYRALANNGVAAPTFDLPRRAPSAAPSQQRVFSADASYIITTVLSDNNARTRTFGFDSPLATRFFSAVKTGTSKDMRDNWTVGYTSRYTVGVWVGNADGQPMWDVSGVTGAAPIWAAIVGYLHRRVPSVEPRAPAGVVQARVNFDGNIEPARNEWFVDGTQTQTVGLAANAISTDNASGIARAAHASGKTAASSSNAAPRIGSPTDGTLFALDPDIPATRQRIVFERANGSSGRASWRLDGKPLGRDERVLWLPWPGRHVLELVNADGSSADSVRFEVRGAIAHQAAPPRAGKPGTARGRAASQPSPTPLTSTLQDSTTNGQKL
>CP026111.1|AUT61155.1|1934474_1940528_+|alpha-2-macroglobulin
MLSGTIKRQAIWAAAAAAMLGLLIGVTWRADAARITQVTPQGKVAQVRQVVVKFDESMVAFGAPDLPAPARIKCNDASASAGQPRWIDDKTWAWDFTADLPPGVACSVDLNDGLKSSAGQALTGPRHYAFETGGPFVQNVQPYGGEIEEDQAFVVRLNGPATDASVQQHVWCESSGLGNRIPVKNVDATTRTELLKRFRLQKEAARVLTLQCQQTLPSGAKAQLVYGKGVASPSGIANDVERRFDFNVREPFAASFSCERENAKAPCTPLRPLRVQFNAPILRTDAEEIRIKGPNGEIKPTFSADDKDPQTSTVEFAAPLPERTDLTIELPSNLKDVSGRALTNADLFPLKTATAPMPPLAKFSSGTFGIIERFAEPDMPALVPVTLRNVEADLHIAGLNAGNAQFTKLRVDADSDIRRWMRNVDRFDGFMMDRQSINQQMPQLLAHNPHPVIVPRKADDSDPKEDRKNPLIDIRSLSLLAGQANVETLALPKADPKALRPFEVVGVPVTKPGFYVIELASPALGTSLLGKQAPMYVRTAVLVTNLGVHFKQGRENSVVWVTTLDKGQPVPNADVHVSDCNGDELASGKTDAHGVLTINQSLTSRNECKEDSFEGFFVSARIDDPKTGHDMAFVRSDWNRGIEAWRFNVPTDTSIEQTVRAHTVFDRTLLRAGETVSMKHMIRVETMHGLTFPKTYPTRLTIRHLGSGQTWHMPLKWTADHTADSTFAIPAAAKLGEYSVSLDDGDASAASNDTSNNDSDDDSSADSARHSYSSGSFRVEEFRLPVFKGTIAVRDEKNHPLVAASEAPVMLQIDYMSGGGASGLPVQVSALMKSTTPAFAGTYPEFSFAPYKKRNDANASSSDDEETEQAADDDTSKLIADKEPVTLDRNGAGSLSLKNLPQVDAPKRLALEATFADPNGEVQTISGNATLWPAAVVAGVKSGQWVSVGNAVPVKALAVDLQGKPRAGVPLEVRGIARITITSRKRMVGGFYAYDNHTETKDLGTLCSGKSDDHGLMTCDAKLKEAGNVDLVVTAKDGEGHASTAATSVWVTREEDLWFGGQNTDRIDVLPEKSAYEPGETARFQVRMPFRFATALVAVEREGIVETHVVKLDGKDPTVELKVSEAWGPNVYVSVLALRGRVREVPWYSFFTWGWKAPLEWARAFWYEGRYYEAPTPLVDLSKPAFRYGLAEIKVGTAAHKLAVTVTPDAKSYTVRGKAHVKLRVQMPGGKPAPAGTQIAVAAVDEALLELMPNNSWDVLDAMLQRRAYGVETSTAQMEIVGRRHFGRKAVPAGGGGGHSSTRELFDTLLLWNPRVTLDANGEASVDVPLNDALTSFRIVAIAAVGDGTFGTGSTSIRSTQDLQLISGLPPLVREGDQFRAQFTVRNTTTRAMKVVVTPNVPGLSLQAQTVDIAADSAREVAWTVSPPDGLSEANPAALTWNISATEQGASHATDALKVTQRVTAAIPITVQQATLTQVDGTFSLPVAAPPNATTTHAGALRGGIAVSLQSKLSDGMPGVRRWFERYPYSCLEQQTSVALGLRDAARWQGVLARMPVYLDKDGLANYFPPGDDSGNTGSTTLTAYLLSVTDEAAKLDPRFALPDDLRAKLEGGLVNFVEGRLERNVWAPRKDLDLRKLAALEALSRHGAARASMLGSIEIAPNQWPTSAVLDYYAVLSRVKDIPQRDEKLAQVEQIIRARLTYQGTRLTFSTADNDDLWWLMSGTETNAARTALTFVDMPGWKDEMPRLVAGMLALQKNGAWQTTTANLWGSIAVQRFSQVFESVPVTGQTKLQLGSTDKTISWSQPAAAAANYASATAITKTADTRSQLLPWPPETRSAPVSLTLTHDGTGKPWATIESLAAVALKAPFAAGYRITKTVTPVDPAVKGVTTRGDIVRVHLDIDAQTDMTWVVVNDPVPAGATILGSGLGRDSEAATQGEKSKGEAWPAFVERGFDGYRAYYDYVPKGKFSIEYTVRLNNVGTFGLPPTRVEALYAPSTFGVLPNAPVVVKPATAAK
>CP026111.1|AUT59658.1|1952020_1953469_-|threonine-synthase
MNYISTRGAGIGERHTFSDILLGGLAKDGGLYLPNEYPKVSADELARWRALPYADLAFEILRKFSDDIPDEDLRELTRRTYTAQVYCNVRDEENAAQITPLKTLGVEGGTPLSLLELSNGPTLAFKDMAMQLLGNLFEYTLAKHGQTLNILGATSGDTGSAAEYAMRGKKGIRVFMLSPHKKMSAFQTAQMYSLQDPNIFNIAIEGVFDDCQDIVKAVSNDHAFKAQQKIGTVNSINWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPVEKLVVATNENDVLDEFFRTGIYRVRKSSETYHTSSPSMDISKASNFERFVFDLLGRDPKRVLQLFRDVEEKGGFDLQASGDFARVQEFGFVSGRSSHDDRVDTIRDVFEQYDTMIDTHTADGVKVAREHLQAGIPMIVLETAQPIKFGETIREALEREPERPAAFSGIEDLPQRFEVLGNDAERVKEFVAERTR
>CP026111.1|AUT59659.1|1953499_1954831_-|homoserine-dehydrogenase
MEPIKVGLLGFGTVGSGTFTVLRRNQEEINRRAGRGIEIARIAVRNPAKATAALGSEAGTVAITDDFGSVVDDPTIDIVAEMIGGTGIARELVLRAIKNRKHVVTANKALLAVHGTEIFEAARANGVMVAFEAAVAGGIPIIKALREGLTANRIQYIAGIINGTTNYILSEMRDRGLDFATALKAAQELGYAEADPTFDIEGVDAAHKATIMSAIAFGVPVQFDKAYVEGISKLAAIDIKYAEELGYRIKLLGIARRADNGIELRVHPTLIPAKRLLANVEGAMNAVVVHGDAVGTTLYYGKGAGAEPTASAVVADLVDVTRLHTADPEHRVPHLAFQPDRLSSTPILPIDEVTSGYYLRLRVADVTGVLADITRILADTGISIDALLQKESEQVDVSKKGETDIILITHETVEKNVNAAIANIEALKTVVSKVTKLRMEALN
>CP026111.1|AUT59660.1|1954889_1956137_-|pyridoxal-phosphate-dependent-aminotransferase
MPVVKPILKSNKLLNVCYDIRGPVLEHAKRLEEEGHRIIKLNIGNLAPFGFEAPDEIIQDMIRNLPTSSGYSDSKGVFAARKAIMHYAQQKGVVGVELDDIYIGNGASELIVMALQALLNDGDEVLLPAPDYPLWTAGVSLSGGTPVHYICDESNAWMPDLDDIRAKITPNTKALVVINPNNPTGALYSDELLLGLIAIAREHGLVIFADEVYDKIIYDGKTHTSMASLSEDVLTVTFNSLSKSYRSCGYRAGWMWVSGLTGENRRRAKDYFEGLGILASMRLCPNVPGQYAIQTALGGYQSINELIAPGGRLYKQRELAYDMLTAIPGVTCVKPEAALYMFPRLDPKLYPIENDQQFILDLLLEERVLLVQGSGFNWKTPDHFRVVFLPNVDDLADSIHRIARFLDGYRKRHAA
>CP026111.1|AUT59661.1|1956707_1957082_+|hypothetical-protein
MKLHQDSSGALNTVTGYGAGYVDINLERHTGSIIVMPESPVISWPVSSFEALSPEHFALLIEPAPEVVIFGSGERLRFPHPRLTAALAAHRIGVETMDFKAACRTYNILMAEGRKVAAALLIEG
>CP026111.1|AUT61158.1|1957461_1959294_+|glycosyltransferase-family-39-protein
MNDKPSGLTLNRTTVLLLVLTLAVIWFVPLGWRHLLPSDEGRYAEMAREMFVTGDWITPRYNGYKYFEKPPLQTWLNALSFAWFGIGEWQARLYTALTGFAGVLLIGYTGARVFNVATGFFAALVLASAPYWYLMGHFNTLDMGLSFWMEVTLCALLLAQRPGLAAREQRLWMWLVWASMALAVLSKGLVGLILPGAVLVLYTVVARDWALWKRLYLVSGLIVFFAVVTPWFVLVQDRNPEFFNFFFVVQQFRRYLTPEQNRPGPLWYFVPVMLVGFLPWLSVTFQSARHALRMPRQANGFAPVTLLFVWTAFIFVFFSASHSKLLSYTLPIAPAIALVIGMYLPLVTREQFHRHLTGYALFLVAGGFGAVFLGRLGDRRNPNALYLEFRTWVFAALAIGFVLTLVAIWINRRRRGASSGAQNGLPAGAMNPTQGTASANATSTGIVGAATAFGIGWVLLATIAGTGHDAFGRLSSGAPLAPDVKAALAKLPADTPFYSVGVLDHTLPFYIDHTMIMVEHADELAFGVSVEPQKWVPTVPQWVERWKADRYALALMSPDRYKEFSEQHLPMTVVARDSRRVIVEKPLPAEAGAASQGAAPAAASAPQPQQ
>CP026111.1|AUT59662.1|1959322_1959694_+|4-amino-4-deoxy-L-arabinose-transferase
MNPISLFCILAGVALNATAQLLLKAGTNAVGHFDFTMANIIPIGWRIATQPPIVGGLACYVLSVVVWIVGLSRVDVSIAYPMLSLGYVVNAFAAWYLFGEVLSAQRLIGIGVILVGVVLVARS
>CP026111.1|AUT59663.1|1959938_1961090_+|DegT/DnrJ/EryC1/StrS-aminotransferase-family-protein
MTQSSVPFLPFVRPEIDEETIRGVVDVLRSGWITTGPQNQAFEKALSEYCGGRPVRTFNSGTATLEIGLRIAGVGAGDEVITTPASWVSTSNVILEVGATPVFVDIDPATRNIDLDLMEKAITPRTKAIIPVFLSGLPVDMDRLYAIARAHKLRVIEDAAQAFGSTWNGERIGKLGDIVSFSFHANKNLTSIEGGALVLNNEEEAVLAQKYRLQGIVRTGFDGMDCELLGGKYNLTDVAARVGLGQLQHIERFNAQRRKLAHAYFDGFEGGAAVKLGMGLPLADFENSNWHMFLVTLPLGRLSLSRAGFMEQMKERGIGTGTHYPAIHLFSLYRAMGYKEGMYPHAEHYGATTLTLPLFTQMNEGDVARVCRAVNEICEQYGR
>CP026111.1|AUT59664.1|1961132_1962182_+|glycosyltransferase
MNQTDPRPVAPELSVIIPVYNEEAGLGELFSRLYPALDALGTGYEVIFINDGSRDRSPALLAEQFRARPDTTRVILLNGNYGQHMAILAGFEQSRGQIVVTLDADLQNPPEEIGKLCAKMREGFDYVGTIRMQRQDSLWRRKASLVMNRLRERITRIKMTDQGCMLRAYSRHIVDTINRCGEINTFIPALAYTFAQNPVEIDVAHEERFAGESKYSLYSLIRLNFDLVTGFSVVPLQWLSFIGVILSMGSAALFVLLLIRRFIIGAEVQGVFTLFAITFFMLGVIIFALGLLGEYIGRIYQQVRARPRYLVQTILEQRNGEPVAAQPRQSVIPGVQPAPVTGDDQGLIR
>CP026111.1|AUT59665.1|1962178_1963114_+|formyltransferase
MKPRAVVFAYHNVGVRCLQVLLARGVDVALVVTHEDSPTENIWFGSVASVAAEHGIPVATPADPKSPELRARVVEARPDFIFSFYYRHMLPVDLLAVAPRGAYNMHGSLLPKYRGRVPTNWAVLNGETETGATLHEMAAKPDAGAIIAQTPVPILPDDTAAQVFDKVTVAAEQTLWRALPALLKGEAPHLPNDLAHGSYFGGRKPEDGRIDFSQSGQQVYNLIRAVAPPYPGAFTEIDEERFVVARARLAPPGAPGGDLPPGIHVGDNGFFATCGDGRIIVIHELRHLRDGNERVVTPAEFTQLTQSSRNT
>CP026111.1|AUT59666.1|1963110_1964157_+|bifunctional-UDP-4-keto-pentose/UDP-xylose-synthase
MKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTERLGDLVNHERMHFFEGDITINKEWVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTSEVYGMCSDEQFDPDESALTYGPINKPRWIYACSKQLMDRVIWGYGMEGLNFTLFRPFNWIGPGLDSIYTPKEGSSRVVTQFLGHIVRGENISLVDGGAQKRAFTDIDDGISALMKIIDNKDGVATGKIYNIGNPTNNFSVRELAHKMLALAAEFPEYAETAKKVQLVETSSGAYYGAGYQDVQNRVPKIDNTMQELSWAPHSTFDEALRKIFEAYRGHVAEARALVEQQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200170-200196	4	0.852
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200292-200318	4	0.852
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200353-200379	4	0.852
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	486501-486527	4	0.852
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	508534-508560	5	0.815
CP026111_1	1.1\|1261098\|27\|CP026111\|CRISPRCasFinder	1261098-1261124	27	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	359977-360003	6	0.778
CP026111_2	2.1\|1951049\|37\|CP026111\|CRISPRCasFinder	1951049-1951085	37	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200107-200143	8	0.784
CP026111_2	2.1\|1951049\|37\|CP026111\|CRISPRCasFinder	1951049-1951085	37	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200229-200265	8	0.784
CP026111_2	2.1\|1951049\|37\|CP026111\|CRISPRCasFinder	1951049-1951085	37	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1856743-1856779	8	0.784
CP026111_2	2.1\|1951049\|37\|CP026111\|CRISPRCasFinder	1951049-1951085	37	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1036093-1036129	9	0.757
CP026111_2	2.1\|1951049\|37\|CP026111\|CRISPRCasFinder	1951049-1951085	37	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	768035-768071	9	0.757

1. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
gaacaccgaacggcgacgcgtgaagcg	Protospacer
* * *.*.*******************

2. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
gaacaccgaacggcgacgcgtgaagcg	Protospacer
* * *.*.*******************

3. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.852

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
gaacaccgaacggcgacgcgtgaagcg	Protospacer
* * *.*.*******************

4. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 4, identity: 0.852

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
gcaaatcaaacggtgacgcgcgaggag	Protospacer
*************.******.**.* *

5. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 5, identity: 0.815

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
taacaccgaacggcgacgcgtgaagcg	Protospacer
  * *.*.*******************

6. spacer 1.1|1261098|27|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.778

gcaaatcaaacggcgacgcgtgaagcg	CRISPR spacer
aaaccccgaacggcgacgcgtgaagcg	Protospacer
. *  .*.*******************

7. spacer 2.1|1951049|37|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.784

tgccttcgtgcttcaagcgtcgccattcggtgtttta	CRISPR spacer
cgttagcgtgcttcaagcgtcgccgttcggtgttctg	Protospacer
.*..  ******************.*********.*.

8. spacer 2.1|1951049|37|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.784

tgccttcgtgcttcaagcgtcgccattcggtgtttta	CRISPR spacer
cggtagcgtgcttcaagcgtcgccgttcggtgttctg	Protospacer
.* .  ******************.*********.*.

9. spacer 2.1|1951049|37|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.784

tgccttcgtgcttcaagcgtcgccattcggtgtttta	CRISPR spacer
ggttagcgtgcttcaggcgtcgccgttcggtgttttg	Protospacer
 *..  *********.********.***********.

10. spacer 2.1|1951049|37|CP026111|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

tgccttcgtgcttcaagcgtcgccattcggtgtttta	CRISPR spacer
cgttagcgtgcttcacgcgtcgccgttcggtgtttgg	Protospacer
.*..  ********* ********.********** .

11. spacer 2.1|1951049|37|CP026111|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.757

tgccttcgtgcttcaagcgtcgccattcggtgtttta	CRISPR spacer
cgttagcgtgcttcacgcgtcgccgttcggtgttatc	Protospacer
.*..  ********* ********.********* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2752050 : 2760060

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT60272.1\|2752050_2753274_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-14	29.2
AUT60273.1\|2753489_2754374_-	GDP-mannose 4,6 dehydratase	E5ES47	Bathycoccus_sp._RCC1105_virus	2.9e-09	23.8
AUT60274.1\|2754375_2755410_-	GDP-mannose 4,6-dehydratase	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	1.1e-103	54.8
AUT60275.1\|2755534_2756329_-	ABC transporter permease	NA	NA	NA	NA
AUT60276.1\|2756476_2757379_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	33.3
AUT60277.1\|2757556_2758108_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.5e-48	53.1
AUT60278.1\|2758104_2758986_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	3.2e-101	60.6
AUT60279.1\|2758995_2760060_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.3e-84	48.2

DBSCAN-SWA_2

2919444 : 2932540

Pandoravirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT60392.1\|2919444_2920512_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	8.1e-75	46.8
AUT60393.1\|2920609_2921686_+	AI-2E family transporter	NA	NA	NA	NA
AUT60394.1\|2921729_2922512_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
AUT60395.1\|2922504_2923191_+	HAD-IB family hydrolase	NA	NA	NA	NA
AUT60396.1\|2923187_2924810_+	polynucleotide adenylyltransferase PcnB	A0A172Q0J1	Acinetobacter_phage	1.0e-15	30.3
AUT60397.1\|2924858_2925422_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	7.2e-14	39.5
AUT61230.1\|2925433_2926114_+	deoxynucleoside kinase	A0A0C5K8U0	Enterococcus_phage	1.8e-06	28.0
AUT60398.1\|2926156_2926972_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	2.8e-35	30.2
AUT60399.1\|2927294_2929175_-	aminodeoxychorismate synthase, component I	S4VNU7	Pandoravirus	5.9e-52	33.8
AUT60400.1\|2929199_2930333_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	7.4e-26	38.6
AUT60401.1\|2930587_2932540_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	1.7e-147	48.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP026113

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026113_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026113_1

358707-358787

Orphan

Consensus_repeat	Method
TTTGCCCTTGCGCTGGCATCCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026113_1

>merge|CP026113|1|358707-358787|CRISPRCasFinder
TTTGCCCTTGCGCTGGCATCCGCGTTACGGTGTTTGCCGTTCAAGCGGTTTGGTTGTTTTGCCTTTGCGCTGGCATCCGCG

>CP026113|1|1|358707-358787|CRISPRCasFinder
TTTGCCCTTGCGCTGGCATCCGCG	TTACGGTGTTTGCCGTTCAAGCGGTTTGGTTGT
TTTGCCTTTGCGCTGGCATCCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026113.1\|AUT64219.1\|363704_364874_-\|2-methylcitrate-synthase	unknown	unknown	gnl\|CDD\|183463
CP026113.1\|AUT64225.1\|371597_373982_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214672
CP026113.1\|AUT66029.1\|351584_351713_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236190
CP026113.1\|AUT66030.1\|368643_369705_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP026113.1\|AUT64215.1\|356352_357702_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP026113.1\|AUT64221.1\|365986_367936_+\|propionate-catabolism-operon-regulatory-protein-PrpR	unknown	unknown	gnl\|CDD\|226350
CP026113.1\|AUT64224.1\|370212_371346_-\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340831
CP026113.1\|AUT64213.1\|352822_354556_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|235708
CP026113.1\|AUT64210.1\|349152_350190_-\|hypothetical-protein	unknown	unknown	unknown
CP026113.1\|AUT64209.1\|348404_349034_+\|cysteine-hydrolase	unknown	unknown	gnl\|CDD\|238496
CP026113.1\|AUT64216.1\|357746_358676_+\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
CP026113.1\|AUT64212.1\|351705_352656_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
CP026113.1\|AUT64217.1\|359631_360813_-\|2-methylaconitate-cis-trans-isomerase-PrpF	unknown	unknown	gnl\|CDD\|131387
CP026113.1\|AUT64222.1\|367945_368524_-\|DUF4337-domain-containing-protein	unknown	unknown	gnl\|CDD\|379516
CP026113.1\|AUT64211.1\|350725_351571_+\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP026113.1\|AUT64218.1\|360849_363447_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	unknown	unknown	gnl\|CDD\|131386
CP026113.1\|AUT64214.1\|354567_356157_+\|aldehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|143447
CP026113.1\|AUT64208.1\|346896_348309_+\|amidase	unknown	unknown	gnl\|CDD\|223232
CP026113.1\|AUT64220.1\|364894_365788_-\|methylisocitrate-lyase	unknown	unknown	gnl\|CDD\|183086
CP026113.1\|AUT64223.1\|369900_370149_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026113.1\|AUT64219.1\|363704_364874_-\|2-methylcitrate-synthase	gnl\|CDD\|183463	PRK12351, PRK12351, methylcitrate synthase; Provisional.	0
CP026113.1\|AUT64225.1\|371597_373982_-\|hypothetical-protein	gnl\|CDD\|214672	smart00458, RICIN, Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.	9.83589e-05
CP026113.1\|AUT66029.1\|351584_351713_+\|short-chain-dehydrogenase	gnl\|CDD\|236190	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated.	0.000499202
CP026113.1\|AUT64215.1\|356352_357702_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.77594e-88
CP026113.1\|AUT64221.1\|365986_367936_+\|propionate-catabolism-operon-regulatory-protein-PrpR	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	0
CP026113.1\|AUT64224.1\|370212_371346_-\|glycosyl-transferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	4.58212e-42
CP026113.1\|AUT64213.1\|352822_354556_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|235708	PRK06131, PRK06131, dihydroxy-acid dehydratase; Validated.	0
CP026113.1\|AUT66030.1\|368643_369705_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	2.58016e-34
CP026113.1\|AUT64209.1\|348404_349034_+\|cysteine-hydrolase	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	2.25035e-49
CP026113.1\|AUT64216.1\|357746_358676_+\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	1.35565e-71
CP026113.1\|AUT64212.1\|351705_352656_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	5.10242e-53
CP026113.1\|AUT64217.1\|359631_360813_-\|2-methylaconitate-cis-trans-isomerase-PrpF	gnl\|CDD\|131387	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126. [Energy metabolism, Fermentation].	0
CP026113.1\|AUT64222.1\|367945_368524_-\|DUF4337-domain-containing-protein	gnl\|CDD\|379516	pfam14235, DUF4337, Domain of unknown function (DUF4337). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 187 and 201 amino acids in length. There is a single completely conserved residue Q that may be functionally important.	2.09923e-42
CP026113.1\|AUT64211.1\|350725_351571_+\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	3.35203e-103
CP026113.1\|AUT64218.1\|360849_363447_-\|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD	gnl\|CDD\|131386	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent. Members of this family appear in an operon for the degradation of propionyl-CoA via 2-methylcitrate. This family is homologous to aconitases A and B and appears to act the part as 2-methylisocitrate dehydratase, the enzyme after PrpD and before PrpB. In Escherichia coli, which lacks a member of this family, 2-methylisocitrate dehydratase activity was traced to aconitase B (TIGR00117) ().	0
CP026113.1\|AUT64214.1\|354567_356157_+\|aldehyde-dehydrogenase-(NADP(+))	gnl\|CDD\|143447	cd07129, ALDH_KGSADH, Alpha-Ketoglutaric Semialdehyde Dehydrogenase. Alpha-Ketoglutaric Semialdehyde (KGSA) Dehydrogenase (KGSADH, EC 1.2.1.26) catalyzes the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. This CD contains such sequences as those seen in Azospirillum brasilense, KGSADH-II (D-glucarate/D-galactarate-inducible) and KGSADH-III (hydroxy-L-proline-inducible). Both show similar high substrate specificity for KGSA and different coenzyme specificity; KGSADH-II is NAD+-dependent and KGSADH-III is NADP+-dependent. Also included in this CD is the NADP(+)-dependent aldehyde dehydrogenase from Vibrio harveyi which catalyzes the oxidation of long-chain aliphatic aldehydes to acids.	0
CP026113.1\|AUT64208.1\|346896_348309_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	3.04798e-126
CP026113.1\|AUT64220.1\|364894_365788_-\|methylisocitrate-lyase	gnl\|CDD\|183086	PRK11320, prpB, 2-methylisocitrate lyase; Provisional.	0

>CP026113.1|AUT64216.1|357746_358676_+|dihydrodipicolinate-synthase-family-protein
MTSQRTPRYRGIFPVVPTTFTETGALDLESQKRVVDFMIDAGSDGLCILANFSEQFALSDDERETLTRVMLEHVAGRVPVIVTTSHYSSAVCVERSRRAQEQGASMVMVMPPYHGATFRVPETQIYEFYARLSDGIDIPIMIQDAPASGTVLSAAFLARMARELEQVSYFKIETPGAAAKLRELIRLGGDAVEGPWDGEEAITLFADLNAGATGSMTGGGYPDGIRPILEAFREGKRDEAFAQYQRWLPLINHENRQTGLLAAKALMKEGGVIACEAPRHPLPAMHADTRAELIDIARRLDPLVLRWGK
>CP026113.1|AUT64215.1|356352_357702_+|MFS-transporter
MTTPYASAQQAAPAVDAGTGAALADEQRIMNLLVRRLIPFLALIYVVAYIDRSVVGFAKLHMNAAVGISDASYGLGAGLFFIGYFLCEVPSNLALERFGARVWFARILFTWGVITMLMSLVSGPTSFYVLRFLLGAAEAGLYPGILYFLTKWFPMRHRARIIGLLVLAQPLAGIVTGPVAGFVLSTHGVFGLSNWQTLFVLSGLPAVLLCVPTLRVLPESPANAKWLAASDRAWIERELAADSASYGLQSHGNPLAALKDKRVLLLALLFLPFPLSIYGLSLWLPTIIKAFGVTDAVTGLLSAVPYLFAVVGLCVVPRHSDRKRERYWHIVVVSGVAAITMALSAWTHTPALQFLFICLTAFSLYSIQAVVWALPGQFLSGARAAVGIATINSLANLGGYVGPYGIGLIKDATGSLASGLYFLSATLLFAVVITFVVRASLPEPKAHAR
>CP026113.1|AUT64214.1|354567_356157_+|aldehyde-dehydrogenase-(NADP(+))
MNLTGELLIGASARRGQGAGFHAVDAATEQALQAPTYYSAKSGDVDEACALAESAFDAYRTLPAERRARFLDDIAACIEALGDALIERAMSESGLPKARLEGERARTANQLRMFATLVRSGDALDARIEPALPERQPPRTDLRFQRIGVGPVAVFGASNFPLAFSVAGGDTAAALAAGCPVVVKAHPAHPGTSELVGRAIQDAVRHAELPEGVFSMLFDAGHEVGAALVAHPSIKAVGFTGSRAGGRALMAIANARAEPIPVYAEMSSVNPNLLMPAALASRAETLARDFVASVTLGCGQFCTNPGLMLGVAGEGFEGFAATAAQSVDGVQAGVMLTGGILRAYEAGIERFAANPAVTTLARGKAPEAGSRRAQAVLFRVSAKSLIADHTLADEVFGPCSVLVECADADELRTVLNRIEGQLTITLHLDDADQPAAQALLPILERKAGRILANGFPTGVEVCDAMVHGGPFPATSDGRSTSVGTAAIERYMRPVCYQNLPAALLPEALRDANPLGVHRRFAGRHERTAG
>CP026113.1|AUT64213.1|352822_354556_+|dihydroxy-acid-dehydratase
MSDKKTKLRSTQWFGTADKNGFMYRSWMKNQGIPDHEFDGRPVIGICNTWSELTPCNAHFRKIAEHVKRGIYEAGGFPVEFPVFSSGESNLRPTAMLTRNLAAMDVEEAIRGNPIDAVVLLTGCDKTTPALLMGAASCDVPAIVVTGGPMLNGKLDGKDIGSGTAVWQLHESLKAGEIDLHKFLSAEAGMSRSAGTCNTMGTASTMACMAEALGTSLPHNAAIPAVDARRYVLAHMSGMRIVEMAHEGLTLSKILTREAFLNAIRVNAAIGGSTNAVIHLKAIAGRIGVQLDLDDWVRIGRNTPTIVDLMPSGRFLMEEFYYAGGLPAVLRRLGEADLLPHPGALTVNGKALWHNVMDAPIYNDEVIRPLDKPLVKDGGIRVLRGNLAPRGAVLKPSAATPELLKHRGRAVVFENFEHYKARIVDETLDVDANSVLVMKNCGPKGYPGMAEVGNMGLPPKLLRQGVKDMVRISDARMSGTAYGTVVLHVTPEAADGGPLAAVQDGDWIELDCDAGTLRVDISDEELARRLESHTPPEMPAGGGYQRLYIDHVLQADEGCDLDFLVGCRGADVPRHSH
>CP026113.1|AUT64212.1|351705_352656_-|LysR-family-transcriptional-regulator
MLDSNPWYVRTRLKTRQLLLLVALDEEGNIHRAADALSMSQPAASKLLRELEEMLDAPLFERMPRGMRPTLYGEVMIRHARSVVGSLDQAREEVLALKSGQLGRVAVGTITSPAVSLLPAAIAQVKQHHPGLSVSVEIDSSNVLLESLAQDKLDLVIGRLSVEHDKLHLRYEPLAEEQALAVARSGHPLLAAQSLTLADVVDASWVVPPAQSVLRHRFELMFQRQSLAPPSNVVESAELLFVTSLLSQSDMLAVLAAEVAHYYAAHGLLSILPLDMPLRMDDFGIITRTGQLLSPASTQVVRALKQVAGELYGAIT
>CP026113.1|AUT66029.1|351584_351713_+|short-chain-dehydrogenase
MNQYDITQRAAVITGGAQGIGYAVAQRAVRSVRRPRHVLSVT
>CP026113.1|AUT64211.1|350725_351571_+|FAA-hydrolase-family-protein
MKLLRYGAPGHEKPGILDRHGAIRDLSSVIDDVAGSTLLPESLERLRQVDIESLPIVSAKERIGACVGRIGKFICIGLNYADHAAESNLPVPSEPVVFGKWTSAVVGPNDDVRIPRGSQKTDWEVELGVVIGKGGTYIDEADALSHVAGYCVVNDVSEREYQIERGGTWDKGKGCDTFGPIGPWLVTADEIPDPQRLALWLEVDGKRYQNGNTSTMIFNVAQIVSYLSRFMSLQPGDVISTGTPPGVGMGHKPEPVYLRAGQTMRLGIEGLGEQQQRTVAA
>CP026113.1|AUT64210.1|349152_350190_-|hypothetical-protein
MSVRTFDPNFALNVNKRLGLSDVNTFNVSAEDQRFFKDSSYGERLAGQELQDAAEKFRGHEAAARKWAAERGVPKSGAYWADRGIDSKSFADPANFVNREAKYDAGLHDLSASLLNGELTIFEQVHNNENHAHFSFVPLSEPEDQRMMFTLIRFAKTMRPYWPEMYALIMEYRGKMTRVKLAQSFDMGAGYIAIPVTNPVPGEREFKLRYGLVSKVSILAEDASNSAVTPAAAPAAVRVNSDAPPPPSGKPMKKLAKTVNLNDRSATVTPEVYQARQQAALDYRSILVRKKKNEIVIALRQHAGNFPVYAERIGDTLACYKIVGGKQVWTGYAISERGVMSFKSR
>CP026113.1|AUT64209.1|348404_349034_+|cysteine-hydrolase
MSKQAPRRALIVVDVQNEYITGNFRIEYPPVASSLPNIAKAIDAANAHGVPVVLVKHVLPADAPIFAEGSVGVELHPDVADRPHDCVITKVLPSTFSGAGFEDWLKEHKIDTLTVIGYMTQNCNDATIREAMHKGFRVEFLPDAAGSLSYENKAGRASAEEMHRIITVIMESTYAATMSTDEWVENLNDPVHVACDNIYYSNLRAHGKM
>CP026113.1|AUT64208.1|346896_348309_+|amidase
MSTELISQDATRLAELIRTKEVSPVEVMQAHLDRISAVDPKINAIVTVADDALNNARVAEAAVMAGQELGPLHGVPFTAKDSIDTAGVLTQRASPIFKGRVPDTDATSVVRMKKAGGILLAKTNHPEFSFWIETDNLLSGRTRNPWNLDRTPGGSSGGESAAVAALMSPIGLATDVAISVRGPAALTGVVGLKATHGRIPMTGIWPRVPRRFWHIGPIARSVRDIALAYSLLGGPDGADGFSTAPLTLDAGVGSTPGRPLRVGLLIDAFAPVDADVAATVQASAEALQGLGVTVEPVRIPVLEQINALELLWKLQVMETKPAFRKVTAGHEDKIFKHVQAVYDTPDTSIADFVDAEQKAEQLRDGFAEYFQRYDALLCPVTPVPAHAHDAAEFNIDGQSVSSLHVMTATAPLNVTGLPGLTLRFGTSREGLPVGVQLVAPWLAESTLLHLASLLEAVSPVRGLHPDLSNI
>CP026113.1|AUT64217.1|359631_360813_-|2-methylaconitate-cis-trans-isomerase-PrpF
MAHAPQIKIPATYMRGGTSKGVFFRLKDLPEAAQVPGTARDALLLRVIGSPDPYGKQIDGMGGATSSTSKTVIVAKSSKPDHDVDYLFGQVSIDKPFVDWSGNCGNLSAAVGPFAISGGLVDPERVPDNGVAVVRIWQANIGKTIIAHVPVSNGSVQETGDFELDGVTFPAAEVRLEFLDPAAEEEGAEGAMFPTGNVVDDLEVPGVGTLKATMINAGIPTIFVNAEAIGYTGTELQDAINSDDAALKKFETIRAHGALRMGLIKSLDEIATRQHTPKVAFVAGPSGYVASSGKAVAADDVDLLVRAMSMGKLHHAMMGTAAVAIGTAAAIPGTLVNLAAGGGEREAVRFGHPSGTLRVGALATLEDGEWAVKKAVMSRSARVLMEGWVRVPG
>CP026113.1|AUT64218.1|360849_363447_-|Fe/S-dependent-2-methylisocitrate-dehydratase-AcnD
MNTAHRKPLPGTSLDYFDTRAAIDAIQPGAYDKLPYTSRVHAENLVRRCDPATLTDSLRQLIDRKRELDFPWFPARVVCHDILGQTALVDLAGLRDAIADQGGDPAKVNPVVPVQLIVDHSLAVECGGFDPDAFAKNRAIEDRRNEDRFDFINWTKKAFKNVEVIPPGNGIMHQINLERMSPVIHAADGVAYPDTLVGTDSHTPHVDALGVIAVGVGGLEAENVMLGRASWMRLPDIVGVELSGKRQPGITATDIVLALTEFLRKEKVVGAYLEFRGEGASSLTLGDRATISNMAPEYGATAAMFFIDEQTIDYLRLTGRDDAQVKLVETYAKAAGLWADSLKNAEYERVLRFDLSTVVRNMAGPSNPHKRLPTSDLAERGIAGKWEDVPGQMPDGAVIIAAITSCTNTSNPRNVIAAALIARNANARGLTRKPWVKSSLAPGSKAVELYLQEANLLPDLEKLGFGIVAFACTTCNGMSGALDPKIQQEIIDRDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIERDVLGTDKDGKPVYLKDIWPSDEEIDEIVRQSVKPEQFRKVYEPMFAVTAASGEPISPLYDWRAQSTYIRRPPYWEGALAGERTLQGMRPLAVLGDNITTDHLSPSNAILANSAAGEYLTKMGLPEEDFNSYATHRGDHLTAQRATFANPTLANEMAVVDGQVKKGSLARIEPEGKVTRMWEAIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLEFKPGVNRLALGIDGTETYDVIGERKPRADLTLVIHRKNGERVEVPVTCRLDTAEEVSIYEAGGVLQRFAQDFLESSKAAA
>CP026113.1|AUT64219.1|363704_364874_-|2-methylcitrate-synthase
MSEADNGATSAGAFKPKKSVALSGVTAGNTALCTVGKTGNDLHYRGYDILDLAGACEFEEIAYLLVHGKLPNVAELAAYKTKLKALRGLPANVKAALEWIPAAAHPMDVMRTGVSVLGTVLPEKDDHNLPGARDIADKLMASLGSMLLYWYHYSHNGKRIEVETDDDSIGGHFLHLLHGVEPPKSWVDAMHVSLNLYAEHEFNASTFTGRVIAGTGSDMYSAITGAIGALRGPKHGGANEVAFEIQSRYQTPDEAEADIRRRVENKEVVIGFGHPVYTISDPRNKVIKEVAKNLSKEASNMKLFDIAERLEGVMADAKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVISRTSGWAAHIIEQRVDNKIIRPSANYTGPDDLAFVPLSKRA
>CP026113.1|AUT64220.1|364894_365788_-|methylisocitrate-lyase
MNSAKQPTSAGAAFRQAVAEGQPLQVVGAINAYVAKMAEAVGFKALYLSGGGVAANSLGVPDLGISTMDDVLTDARRITDATNLPLLVDIDTGWGGAFNIGRTVRSFIKVGVAAVHLEDQVGQKRCGHRPNKEVVATEEMVDRVKAAVDARTDDQFVIMARTDAAAAEGIDAAIERAVAYVEAGADMIFPEAMKTLDDYRRFKAAVKVPILANLTEFGATPFFTTTELREANVDIALYCCGAYRAMNAAALNFYETVLRDGTQKAAVPTMQTRDDLYKYLGYHAYEDKLDALFAAHK
>CP026113.1|AUT64221.1|365986_367936_+|propionate-catabolism-operon-regulatory-protein-PrpR
MSTPSTASNPRPRIWAMGISRLRDLFVDIASEYAGRADLRVVARGFDDAMQEIDAAGAERPDVIVAGGSNAAYLKGRVNVPVVAITPTGFDVMQALARARRDGDSVALVTHGETPDEVKRFTAAYGIDVIFASYRSTEDAENCVRELHERGVDAVVGPGHVTDLAERAGMGAVFLYSRTSVRSAFDTALDVAQATRAEGVRRQRLDNLLQHLRDGVVALDAQGRVEAINQRLADVLGIDAASAAGVPLQKLAPDLASALPDADGDTLVSVRGASYLVHRGPLAGAGHAAGTVLTFQESRAVERLDRTLRSRQRGQQFTARYRLDDLVGECPSIERVRTLVRRYAKSDATVLILGESGTGKEMVAQSMHRLSARRDFAFVAINCGAFPEALLESELFGYEEGAFTGARKGGKAGLIEAAHRGTLFLDEIAEMPLPLQSRLLRVLQEREVVRLGSTEPTRVDIRVVAATHRALTEGIEAGTFRADLYYRLNILSIALPPLRERTTDVLPLAAELLLQAAAREPRLVARVPDLQAATRVLGQIGEPLRLYAWPGNVRELQNVIERIAVELADTEGDTADVFTREMLDVVAPELVASSVSQKKDALTLRERSRHVQADEIRAMLAACGGDRDAACKALGISKTTLWRKLNAIQ
>CP026113.1|AUT64222.1|367945_368524_-|DUF4337-domain-containing-protein
MSDEYEVHGPHDHAIEHAGGHGNDSNASRLAVMTAILASVGAIAAYQSGANENQALFFKNEAAILKTEAANQWAYYQAKGEKQNLAELGAALTDPASSAHAKFITDTQRYKTEKEPIRQQAETLEKQVKKDNEVSEALQHQHHRWAQATTLIQISIALAAITLLTRKRWLQKLTIGMAVVAVGLFGTALMGW
>CP026113.1|AUT66030.1|368643_369705_-|AraC-family-transcriptional-regulator
MARNASVSESVLEVLVLFIQVGEEMMSTRPAPRPETQASDGTDVIPRRLRRVAVVLFDGFDLLSASVIANAFEAASELSARGPIQWFYQITTLSDHDGYIASSAALLVSAETFDTHAGHEFDAIFAIVGADACIDARSAPLIAWINRARSKAADVRLVGAPLPGLDGHACSEPNGWERDSQASAARLSGECKTRSQSLHDALTGALKLIRRDMGDSMARRVAERLSICSHDVLNAIFEDVVGSTPAEKVRAAAHWLQDNCRRQVTIEDAAQVAAMSERSLLRHFRSELGMTPSDYLMHARLQVVCNLLIETDLPVDKVAKRAGLTSGDHLARSFRRHMKTSPTEYRAQRRLQC
>CP026113.1|AUT64223.1|369900_370149_-|hypothetical-protein
MSLTSNQQDNFGSALHMLVSQQRNTLRTLLALSDSTRHHDAASARAALAEIFHAAEQCHSTYQAMLVEIMGTQKEGCVSREN
>CP026113.1|AUT64224.1|370212_371346_-|glycosyl-transferase
MRILQVVYAPRLSGAEILAKGLAIQHREGGNEVCIASMQPQMADFDHSRSELAAADVLCDFPESPQGRIGRLMHLWRCIRQFRPDVIIAHATLAALYVRLLPVAAPVIYVMHSGSNDFANPKLRWAERVLSRRAKAVVGVSSQNTLDYLREVGPHPLVTVIPNGVDLPRFQAAPSASVIADRSTSQQIVQLGRYVVDKGQLETIHAFEIVLQQEPDARLVLYGVVEDPVYHDMAMKLVQRLNLDERVTLCGPASNVAAILQASQVFAMPSLREAHSIGFLEALASGIPVVASRIAAFEFARDFPGVSLVDTKDPSTYARALLHALRVPRAYRALDGYTLHDTAENYLKIAQAVYKHKVRGIAAESSISALESNESSM
>CP026113.1|AUT64225.1|371597_373982_-|hypothetical-protein
MNTSPFGLFRLSRCVLFLLCMCFILIGTARASSADCSAGTLVTVVAHLDDDLLFVEPAISERLRAGWCVTTVHLIGGANGANFAYVQKREEASRLAYARLAGVGNAWDESTVQIAGKPAFQLTLKAQPRVRLLELRLPGGAVRGGRVPLALLWDQGATLTTFPMGHGELPPTRYTRDSLFVVLKTLLQDATRIATLNPDTVPFIEHPDHIYTARMTRHVAQTLGRSIPIAFYTTYPTGTWPATLFGEEAQRKRDIAASYFSIDGGDIAHVFGEYQWDGNWVLRNYLRDDTTLHTKPDFVAIPSVLFNTGSSQCLTSRGNARGPELASCDESASQQWKWEPRAAYAGNQHNAALVSVATGQCVAEHDGRLAEEPCEEWNVSQRWTPWDFGLIFTPSRRCLGAENNRLHIRGCASMTTRYRWSTMRPSWSTDLRLTGAMYGDVTGDGTLSAVYVQRRSDGPGFDVYVQTSILGKPEEPENWYASAVRFDSRATMPTCGADTLCFDSARFLTGDFDGDGRADLMVVTPRNGGSAFWLLRSNGNHFAAPVLWFQSDGRIPAERTQQYLAFSTKETSREKILAAVQRSDKAVDLWTISANQAGQIQQTKVKGTNYLKSNVQLLTVSSTRKDTATFIAVQSTDDNRRLAVTTLSVDKEHWSFGATSLLPAQFQRDTTRFTRDASADATIVMTVPHFQEPGGVDVWKWNVQHRETAPVLLAYLRDLRWQDAAPALLRDNNRTALVFYERTDAVLANTLFSAGTAALARYAFDGNNLQSIPMEGFPLPAVYSETLWLDRLVQ

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Crispr_ID: CP026113_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026113_2

793638-793728

Orphan

Consensus_repeat	Method
CGCAAAGGCCAAAACACCAAACGGCGACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026113_2

>merge|CP026113|2|793638-793728|CRISPRCasFinder
CGCAAAGGCCAAAACACCAAACGGCGACGCCTGAAGCACGAAGGCAAATCGCGGATGCCAACGCAAAGGCCAAAACACCAAACGGCAACGC

>CP026113|2|2|793638-793728|CRISPRCasFinder
CGCAAAGGCCAAAACACCAAACGGCGACGC	CTGAAGCACGAAGGCAAATCGCGGATGCCAA
CGCAAAGGCCAAAACACCAAACGGCAACGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026113.1\|AUT64556.1\|782473_783385_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP026113.1\|AUT64571.1\|798923_799331_-\|reactive-intermediate/imine-deaminase	unknown	unknown	gnl\|CDD\|223329
CP026113.1\|AUT64572.1\|800428_800680_+\|hypothetical-protein	unknown	unknown	unknown
CP026113.1\|AUT64559.1\|784666_785422_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
CP026113.1\|AUT64562.1\|787634_788819_+\|monooxygenase	unknown	unknown	gnl\|CDD\|173852
CP026113.1\|AUT64561.1\|786338_787370_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270274
CP026113.1\|AUT64564.1\|790245_791484_+\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
CP026113.1\|AUT64563.1\|788991_790242_+\|SfnB-family-sulfur-acquisition-oxidoreductase	unknown	unknown	gnl\|CDD\|274924
CP026113.1\|AUT64568.1\|796215_797079_-\|taurine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182276
CP026113.1\|AUT64573.1\|800723_800990_-\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
CP026113.1\|AUT64560.1\|785418_786285_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223673
CP026113.1\|AUT64567.1\|794662_796219_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223981
CP026113.1\|AUT64565.1\|791483_792845_+\|FMN-dependent-monooxygenase	unknown	unknown	gnl\|CDD\|274819
CP026113.1\|AUT64569.1\|797075_797855_-\|taurine-transporter-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|183056
CP026113.1\|AUT64574.1\|800990_801176_-\|hypothetical-protein	unknown	unknown	unknown
CP026113.1\|AUT64558.1\|783705_784545_-\|glyoxalase	unknown	unknown	gnl\|CDD\|379203
CP026113.1\|AUT64570.1\|797864_798872_-\|taurine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226904
CP026113.1\|AUT64566.1\|794315_794648_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|224069
CP026113.1\|AUT64557.1\|783494_783698_+\|hypothetical-protein	unknown	unknown	unknown
CP026113.1\|AUT66078.1\|793893_794190_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026113.1\|AUT64556.1\|782473_783385_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.9609e-26
CP026113.1\|AUT64571.1\|798923_799331_-\|reactive-intermediate/imine-deaminase	gnl\|CDD\|223329	COG0251, TdcF, Putative translation initiation inhibitor, yjgF family [Translation, ribosomal structure and biogenesis].	4.74636e-37
CP026113.1\|AUT64562.1\|787634_788819_+\|monooxygenase	gnl\|CDD\|173852	cd01163, DszC, Dibenzothiophene (DBT) desulfurization enzyme C. DszC is a flavin reductase dependent enzyme, which catalyzes the first two steps of DBT desulfurization in mesophilic bacteria. DszC converts DBT to DBT-sulfoxide, which is then converted to DBT-sulfone. Bacteria with this enzyme are candidates for the removal of organic sulfur compounds from fossil fuels, which pollute the environment. An equivalent enzyme tdsC, is found in thermophilic bacteria. This alignment also contains a closely related uncharacterized subgroup.	1.34657e-142
CP026113.1\|AUT64561.1\|786338_787370_-\|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270274	cd13556, PBP2_SsuA_like_1, Substrate binding domain of putative sulfonate binding protein, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes the periplasmic component of putative ABC-type sulfonate transport system similar to SsuA. These domains are found in eubacterial SsuA proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding the ligand, SsuA interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The SsuA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	5.0925e-161
CP026113.1\|AUT64567.1\|794662_796219_-\|FAD-binding-protein	gnl\|CDD\|223981	COG1053, SdhA, Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion].	2.31701e-43
CP026113.1\|AUT64563.1\|788991_790242_+\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
CP026113.1\|AUT64564.1\|790245_791484_+\|SfnB-family-sulfur-acquisition-oxidoreductase	gnl\|CDD\|274924	TIGR04022, Acyl-CoA_dehydrogenase_type_2_domain, sulfur acquisition oxidoreductase, SfnB family. Members of this protein family belong to the greater family of acyl-CoA dehydrogenases. This family includes the sulfate starvation induced protein SfnB of Pseudomonas putida strain DS1, which is both encoded nearby to and phylogenetically closely correlated with the dimethyl sulphone monooxygenase SfnG. This family shows considerable sequence similarity to the Rhodococcus dibenzothiophene desulfurization enzyme DszC, although that enzyme falls outside of the scope of this family. [Central intermediary metabolism, Sulfur metabolism].	0
CP026113.1\|AUT64573.1\|800723_800990_-\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	3.73292e-18
CP026113.1\|AUT64560.1\|785418_786285_-\|ABC-transporter-permease	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	5.43737e-70
CP026113.1\|AUT64565.1\|791483_792845_+\|FMN-dependent-monooxygenase	gnl\|CDD\|274819	TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family. This model represents a distinctive clade, in which all characterized members are FMN-binding, within the larger family of luciferase-like monooxygenases (LLM), among which there are both FMN- and F420-binding enzymes. A well-characterized member is nitrilotriacetate monooxygenase from Aminobacter aminovorans (Chelatobacter heintzii), where nitrilotriacetate is a chelating agent used in detergents. [Unknown function, Enzymes of unknown specificity].	0
CP026113.1\|AUT64568.1\|796215_797079_-\|taurine-ABC-transporter-permease	gnl\|CDD\|182276	PRK10160, PRK10160, taurine ABC transporter permease TauC.	3.90958e-98
CP026113.1\|AUT64569.1\|797075_797855_-\|taurine-transporter-ATP-binding-subunit	gnl\|CDD\|183056	PRK11248, tauB, taurine ABC transporter ATP-binding subunit.	1.6771e-110
CP026113.1\|AUT64558.1\|783705_784545_-\|glyoxalase	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	2.57332e-31
CP026113.1\|AUT64570.1\|797864_798872_-\|taurine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226904	COG4521, TauA, ABC-type taurine transport system, periplasmic component [Inorganic ion transport and metabolism].	3.55178e-150
CP026113.1\|AUT64566.1\|794315_794648_-\|ferredoxin-family-protein	gnl\|CDD\|224069	COG1146, COG1146, Ferredoxin [Energy production and conversion].	1.00761e-11
CP026113.1\|AUT64559.1\|784666_785422_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.48522e-102

>CP026113.1|AUT64565.1|791483_792845_+|FMN-dependent-monooxygenase
MARKQILLNAFNMNCVGHINHGLWTHPRDRSTDYRLLPYWTDLARTLERGLFDGLFLADIVGVYDVYQRNVDVTLRESIQLPVNDPLLLVSAMAAVTSHLGFGVTVNLTYEQPYLLARRFSTLDHLTQGRVGWNIVTGYLDSAARAMGLSEQLPHDERYERADEYLEVLYKLWEGSWEADAVLRDKGARVYADPAKVHEVRHAGRYYNVEGYHLAEPSPQRTPVLFQAGSSGRGQRFAARHAECVFISPPNRNAARETVKALREQLVLAGRRPDDVKVFAGAAVVAGATEREAREKYADYLQYASREAGLAHFAASTGIDYAQYDLDEPVDYAPGNAIESATRTAKQHGWTRRKLLEMFELGGRYPAIVGSAAQVADELEGWIEETGIDGFNLSRTVVPESYEDFIDLVVPELQSRGLYKTAYGDGTLRNRLFGEGDHLPARHAAAGFRRDLG
>CP026113.1|AUT64564.1|790245_791484_+|SfnB-family-sulfur-acquisition-oxidoreductase
MSLDISEETRDIVDLGHGTPDQITDDAHAIRVAKQLAEAFAPDAAARDRERRLPWAELDAFVASGLWGITVPREFGGAGVSSGTLAEVTATISAADGSLGQIPQNHYYALEVLRVGGSGAQQRFFYDRVLAGERFGNALAETGHKDFKRRTRLARTAAGWHIDGRKFYCTGALYAHWIPTLVITEEKGRDITWLAFVPRDADGVEVIDDWDGFGQRVTGSGTVQFSHVRVEPEWVVPFQASFERPTTIGPLAQIIHAAIDLGQARGAFQAALQFVREHSRPWIDAKIERAAADPLTIAQFGDLAVRLRAAEALLHRAGRFVDAAQAGPTERSVAQASIAVAEARALTTTVSLDAGSRLFELAGTSATLDGLGLDRFWRNARTHTLHDPVRWKYHAVGNYYLNDKLPPRHGAL
>CP026113.1|AUT64563.1|788991_790242_+|SfnB-family-sulfur-acquisition-oxidoreductase
MSTVESSLAAAQLPRRPDPARVKRIAGDSDALAAAHALAAVFATGAAERDRQRILPWAELDLWSESGLGAITVPGQYGGADVSFATLAEVFAILCAADPALGQIPQNHFGVLGVLREIGTPAQKARLYGEVLAGHRLGNAGPERRSAAASTVLQGTTRLRATEDGLRLDGKRFYSTGALFAHRVPARATDDAGRAVQVWVPRDAAGLTVIDDWSSFGQRTTASGTVIFENVLVDPQDVLSLWQLADRPGLFGPTSQLIQAAIDQGIAEAAVADALAFVRERARPWIDSGLERATDDPYIIADVGRLQIELHAAREVLLEAGHTLDAVAAAPIDAEASARASVAVAEAKVLTTRIALEASEKLFELAGSASTRAVHHLDRHWRNARTHTLHDPVRWKLHLLGNYHLNHVLPTRHSWN
>CP026113.1|AUT64562.1|787634_788819_+|monooxygenase
MTTHVESNPASQIQIAQALAQQFAESAVERDEQGGTPKAERDAIRASGLLSLSIPKQYGGTGASWTQTLDVVRTFARVDSSIAHVFGFHHLLLATVRLFGRPDQWEPWFEQTAQKNWFWGNTLNPLDTRTVVQRVDNAYEFSGRKSFCSGALDSDMLVASGLDAVSRKLLIAAIPTSRSGITLNHDWNSFGQRQTDSGSALFENVRVEESELLLEPGPLSTPFACLRPLLAQLIFTQMFLGIGEGVFAEMKHYTRHESRPWFKSPAEQASKDPHTLRRYGEFWVELESVRLLAGRAVQLFDEAWARGAELDETTRGHVAVAIATAKVAATRVGLDLTSRMFEVAGARATHGALRLDRFWRNLRTQTLHDPVDYKLQELGEWAVNDELPTPSFYS
>CP026113.1|AUT64561.1|786338_787370_-|aliphatic-sulfonate-ABC-transporter-substrate-binding-protein
MASVRGFAFFARARRAHVLRNIMTTAAAALALCYFGSTQAAPLAELKLDYAYYSPESLVIKRNGWLEQEFTADHTQVKWVLSLGSNRALEYLNSGAIDIGSTAGLAAVLGKANGNPIRAVYVFSRPEWTALVVRKDSPIKSLTDLKGKKIAATKGTDPFLFTLRALHTVGLSRDDVEIVNLQHPDGRTALANNQVDAWAGLDPHMAAAQIDDGARLLYRNVDFNTWGLLNAREDFIREHPEQLARVLKVYEKARVWIAAHPDDTAKIVSEESKVSLAVAKLQLSRNDFSHPQPGAQQIAALKAAAPILVDEQLVKSGTDLNQVIDALIDPRIAQPVIASNGAK
>CP026113.1|AUT64560.1|785418_786285_-|ABC-transporter-permease
MAATEQTLALKTRDSHSRAASERTLRKRPRDAMRLWRYAGYALPVVFLAVIEALVRTSVLPMHLVPAPSTIAQTLWDLGGTRVARHIGASIARVYAGFALGSALALLIGAAMGLSRRVDALLDPAFQALRAIPSLAWVPILLLWMGIDEAPKITLIAIGAFFPVQLSVVAGIHGVDRKLIEFGELNRLTPRAMFTRILLPASMPQIFTGLRTGLSLAWMFMVAAELIAATRGLGYLLSDGRETGRPDLVFGAILLLALLGKLSDGTFKLIETRVLSWRDAHHVSGDAP
>CP026113.1|AUT64559.1|784666_785422_-|ABC-transporter-ATP-binding-protein
MSPSTPPLLQVRGLARRFGPRTVFEQVSFELARGEIVSLVGPSGCGKSTLLRAIAGLDGHADGSVLLEQQLQRGPSDRIGVIFQEPRLLPWLSVADNIAFAAGPRQGHNPRVDTLLAEVGLSGVRDALPKQLSGGMAQRVALARGLFAEPDLLLLDEPFSAVDAITRSRLQRVLLALAHAHGTTILLVTHDLDEALLLSDRVLLLSPPGDDRPSHIAREIHVDAPRPRNLRDPAMDALRDTLLDGIASTPI
>CP026113.1|AUT64558.1|783705_784545_-|glyoxalase
MPLLPDHLVIRVHDLKTTIADFAELGFTVQRGGTHADGTTHNALIGFADGSYIELIAFLKDAREHRWWDEQQRAGEGFVDFALLPESVARTVEATYARGLYYDGPIPGGRIRPDGTRLEWQIGRPTTRDLPFLCGDLTPRFLRVAEGEARTHRNGATGLAAVNVAVSDLEKSIARYRILLGDVPVHRGALTGHGVYFATLSIGRTTVTLLSPVTRTRADDDPDAGNTTALAEALRSHLAIRGEGVFSAAIHVADAAQAHELPRSLSHGARLEFVYAPGG
>CP026113.1|AUT64557.1|783494_783698_+|hypothetical-protein
MQNFFCKDLIERFGYGMAVYIAAKAAAMQRSIDAINDERRVVGRCLLENASIEEVVSVLRRKGKLPA
>CP026113.1|AUT64556.1|782473_783385_+|alpha/beta-hydrolase
MTHGNAQPAANRFFPGFSKLDVDTEDVSFSGVTGGSGPPVLLLHGYPQTHIAWRKVAPTLAQSHTVIVPDLPGYGDSRTRNDQPRWTKRRVAHALVALMDRLGHERFAVVGHDRGARVGYRLALDHPARVAAYASLTVIPTLDAFAGVDKAFALNAWHWFFLAQPFDLPERMLDADPDAFIDAALSKMAGGLDGIDPLALDAYRAAFRKPEVRHAICEDYRAATAEDLQYDTADFDAGKKLTSPVLVLWSEREQRARKTLPIDVWSKWASRVTGRALPGGHLLPEDAPDEVLSALVPFLAEAF
>CP026113.1|AUT66078.1|793893_794190_-|hypothetical-protein
MNADTIDYEALTLVMEKRIATLAKAARKKRSRNEASERVFFAAAANEALFVWMLLASRMNSDLYLADKARLTRMIEDVAADCAQAVDVRFHAEGLVVV
>CP026113.1|AUT64566.1|794315_794648_-|ferredoxin-family-protein
MIELISESRCTACDRCVDVCPTNVFDAVKGGIPVIARPDQCQTCFMCELYCPADAMYVHPFAAGHVAVDETQLVQNGALGAYSRALGWTKARAGGTERDETHRLFELGVT
>CP026113.1|AUT64567.1|794662_796219_-|FAD-binding-protein
MSTSSAHADQIALRADVFVAGGGPAGTWAALMAARSGATVVLADKGYCGTSGAAAASNNNVWYVPDPNEYERHFKERFRTGGELSELSWTSQVLETAASQLRLLEALRYPFPRKDDGTPNRATLRGPDYMRFMRQQIKRAGVTILDHAPLLGLVHDEREGRVTGAFGARRDGSRWRVSANACVIATGGCAFLGGALGTNVCTGDGHLAAAEVGALFSGMEFSSQYGLAAAFSSVTKGLPFIWASYSTGDGRPIHIDEDDAFIPVAKALMNEPVFAVFDRATPDVERWLRSGQANAFLPYDRMGIDPFRTRFPVGLRHEGTVRGTGGIRLVDTDGRTDVPGLYAAGDAASREAIVGARTGGGSPNAAWAIATGSWSGEAASRFAKVHGSASPVDIDPHYAQLATSDPRAAAATLEREVRPPAVQLFRSELRLSAALRAIDDALAARSSDGASFAASRSAYALLYVAKLSYTSALARRETRGLHRRDDFPLRTEDASRLLISGVKAPAIRWKPIVQPEIA
>CP026113.1|AUT64568.1|796215_797079_-|taurine-ABC-transporter-permease
MNAADHPARAPSALPKATARSGAPRATRVPRWSLAGSRWISAATVIVLIAAWGIASRLELVSPVFMPSPAAVAKKFVTVAIDGSSNATLLEHTLASLHRMLAALLLAIVTAIPVGILTGMNRVAQAIVDPLIEFYRPIPPLAYLPLIVIWCGIGEPSKVLLIWLAVFAPLAIATQQGVRRVKPGRIRGARALGATRWQIVRYVVVPSAAPDVLTGIRIGLGVGWSVLVAAELIAATRGLGFMIQSAGQFLETDVVIMGIIVIALIAASIEWGLRRLQKALVPWDGHA
>CP026113.1|AUT64569.1|797075_797855_-|taurine-transporter-ATP-binding-subunit
MIRVESVSVDFDTGAGRRTVLSNLDLDLRDGSFTVVLGPSGCGKTTLLNVIAGFIAPTAGKVTLDGVAVTGPGAERGVVSQDDALLPWQNVEQNIGFGLQLRGVPRSALREKVDSLLALTGLSGYADYPLWKISGGMRQRVNLARSLAVDPRYLLLDEPLGALDALTRQRMQEYLLQLWTRYDKGMLMITHDITEALFMATDLVLMKGDPGRIESVRGLDFGRRFAAGENARAIRNEPAFVRLRDELETGFFADEGETI
>CP026113.1|AUT64570.1|797864_798872_-|taurine-ABC-transporter-substrate-binding-protein
MNTRFFVRLIAPLFASAILGASPAHAADKTVTIGYQTDIEPSKIAQAKGLYEKDSGYQINWRKFNTGADVIAAMASGDVQVGFTGSSPLAAGVTRGLPIETFFVAAEIGSAEAFVVRNGSNINTPQDLIGKKIAVPFVSTTHYSLLAALKHWNIPADRVTILNLAPPEIAAAWQRGDIDGAYVWEPALGKIQKTGKVFTTSADVRKWGAPTFLAWVARKDFAQSHPDFLVSFAKVTGQVNEDYRKNGANWTASSPEVTAIARVSGSDPADVPPLLHGTTYPLLAEQSGSALLGGGTATALADTSKFLKEQKRLDAVLPDYRPTVTSAYVQQASKQ
>CP026113.1|AUT64571.1|798923_799331_-|reactive-intermediate/imine-deaminase
MSSIVFHQSPTAAPPPPSARYSHAVEANGWLHVTGQLPVDPNAPDKTLPEGIEAQAKLCFHNIEQIVQHAGFALSDTVFVRIYLRDFNADYAGFNRVYDSYFDDAVRLPARTTIGVAQLGRDARVEIDAVLYSAR
>CP026113.1|AUT64572.1|800428_800680_+|hypothetical-protein
MDMEKPIITPEEFVDEINRRLPEHDCYTQGLQMFLVPRGAMPDEAIGIDWEPRNARNGVIAVSEVHREVASEFSVSKHLGRRH
>CP026113.1|AUT64573.1|800723_800990_-|DUF1488-domain-containing-protein
MAKASAVINFPNPARIHDASRHCVCFWGYDNAREIVFQVDDVVLVKLNPNKDSDESSLLAAFDHNREKILEIARTVYTGGPQNKYTIS
>CP026113.1|AUT64574.1|800990_801176_-|hypothetical-protein
MQKQTKVYPAPPSKQSDYASQQAARVSAQQKAENERAQKRLEMDARLDVNASKWRYVCKGE

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Crispr_ID: CP026113_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026113_4

1930513-1930633

Orphan

Consensus_repeat	Method
GCTTCACGCGTCGCCCCTGTGCGGGGCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026113_4

>merge|CP026113|4|1930513-1930633|CRISPRCasFinder
GCTTCACGCGTCGCCCCTGTGCGGGGCGGCATGTCTTTTCGCTGGCATCCGCGATTTGCCTTTGCGCTGGCATCCGCGATTTGTTAGCGTGCTTCAGGCGTCGCCCCTGTGCGGGGCGGCA

>CP026113|4|4|1930513-1930633|CRISPRCasFinder
GCTTCACGCGTCGCCCCTGTGCGGGGCGGCA	TGTCTTTTCGCTGGCATCCGCGATTTGCCTTTGCGCTGGCATCCGCGATTTGTTAGCGT
GCTTCAGGCGTCGCCCCTGTGCGGGGCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP026113.1\|AUT65410.1\|1939837_1941568_-\|class-II-poly(R)-hydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|130898
CP026113.1\|AUT65407.1\|1937179_1938463_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
CP026113.1\|AUT65398.1\|1923951_1924818_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|180269
CP026113.1\|AUT65396.1\|1919074_1919254_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
CP026113.1\|AUT65405.1\|1933230_1934178_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
CP026113.1\|AUT65412.1\|1942093_1943737_-\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|235730
CP026113.1\|AUT65411.1\|1941601_1942066_-\|MaoC-family-dehydratase	unknown	unknown	gnl\|CDD\|239534
CP026113.1\|AUT65395.1\|1917725_1919036_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP026113.1\|AUT65399.1\|1925001_1925430_+\|hypothetical-protein	unknown	unknown	unknown
CP026113.1\|AUT65404.1\|1932769_1933018_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP026113.1\|AUT65406.1\|1934427_1937160_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225461
CP026113.1\|AUT66188.1\|1925564_1926341_-\|transcriptional-regulator-GlcC	unknown	unknown	gnl\|CDD\|182186
CP026113.1\|AUT65409.1\|1939368_1939794_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|130900
CP026113.1\|AUT65402.1\|1929144_1930377_+\|glycolate-oxidase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|236890
CP026113.1\|AUT65403.1\|1931417_1932767_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|341493
CP026113.1\|AUT66187.1\|1919402_1922597_-\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|236645
CP026113.1\|AUT65408.1\|1938459_1939293_-\|poly(3-hydroxyalkanoate)-depolymerase	unknown	unknown	gnl\|CDD\|131294
CP026113.1\|AUT65400.1\|1926564_1928064_+\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|183043
CP026113.1\|AUT65397.1\|1923083_1923947_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|380091
CP026113.1\|AUT65401.1\|1928063_1929131_+\|glycolate-oxidase-subunit-GlcE	unknown	unknown	gnl\|CDD\|236893

Protein	Function_ID	Function_description	E-value
CP026113.1\|AUT65410.1\|1939837_1941568_-\|class-II-poly(R)-hydroxyalkanoic-acid-synthase	gnl\|CDD\|130898	TIGR01839, Poly3-hydroxyalkanoate_polymerase_1, poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
CP026113.1\|AUT65407.1\|1937179_1938463_-\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	8.52337e-100
CP026113.1\|AUT65398.1\|1923951_1924818_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|180269	PRK05808, PRK05808, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	6.53113e-171
CP026113.1\|AUT65401.1\|1928063_1929131_+\|glycolate-oxidase-subunit-GlcE	gnl\|CDD\|236893	PRK11282, glcE, glycolate oxidase FAD binding subunit; Provisional.	0
CP026113.1\|AUT65405.1\|1933230_1934178_+\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.57223e-39
CP026113.1\|AUT65412.1\|1942093_1943737_-\|fatty-acid--CoA-ligase	gnl\|CDD\|235730	PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated.	0
CP026113.1\|AUT65411.1\|1941601_1942066_-\|MaoC-family-dehydratase	gnl\|CDD\|239534	cd03450, NodN, NodN (nodulation factor N) contains a single hot dog fold similar to those of the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit. Rhizobium and related species form nodules on the roots of their legume hosts, a symbiotic process that requires production of Nod factors, which are signal molecules involved in root hair deformation and meristematic cell division. The nodulation gene products, including NodN, are involved in producing the Nod factors, however the role played by NodN is unclear.	4.60534e-79
CP026113.1\|AUT65395.1\|1917725_1919036_+\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.42888e-103
CP026113.1\|AUT65404.1\|1932769_1933018_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.10019e-09
CP026113.1\|AUT65406.1\|1934427_1937160_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225461	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription].	7.29835e-141
CP026113.1\|AUT66188.1\|1925564_1926341_-\|transcriptional-regulator-GlcC	gnl\|CDD\|182186	PRK09990, PRK09990, DNA-binding transcriptional regulator GlcC; Provisional.	1.40215e-164
CP026113.1\|AUT65409.1\|1939368_1939794_-\|chemotaxis-protein	gnl\|CDD\|130900	TIGR01841, hypothetical_protein, phasin family protein. This model describes a family of small proteins found associated with inclusions in bacterial cells. Most associate with polyhydroxyalkanoate (PHA) inclusions, the most common of which consist of polyhydroxybutyrate (PHB). These are designated granule-associate proteins or phasins; the member from Rhodospirillum rubrum is an activator of polyhydroxybutyrate (PHB) degradation. However, the member from Magnetospirillum sp. AMB-1 is called a magnetic particle membrane-specific GTPase.	0.000222384
CP026113.1\|AUT65402.1\|1929144_1930377_+\|glycolate-oxidase-iron-sulfur-subunit	gnl\|CDD\|236890	PRK11274, glcF, glycolate oxidase subunit GlcF.	0
CP026113.1\|AUT65403.1\|1931417_1932767_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|341493	cd17808, HipA_Ec_like, type II toxin-antitoxin sytem toxin HipA from Escherichia coli and similar proteins. This family contains type II toxin-antitoxin (TA) system HipA family toxins similar to Escherichia coli HipA, a serine/threonine-protein kinase that phosphorylates Glu-tRNA-ligase (GltX), preventing it from being charged, leading to an increase in uncharged tRNA(Glu). This induces amino acid starvation and the stringent response via RelA/SpoT and increased (p)ppGpp levels, which inhibits replication, transcription, translation and cell wall synthesis, reducing growth and leading to persistence and multidrug resistance. HipA is the toxin component of the HipA-HipB TA module that is a major factor in persistence and bioflim formation; its toxic effect is neutralized by its cognate antitoxin HipB. HipA, with HipB, acts as a a corepressor for transcription of the hipBA promoter. In the Escherichia coli HipAB:DNA promoter complex, HipA forms a dimer and each HipA monomer interacts with a HipB homodimer which binds DNA. The HipAB component of the complex is composed of two HipA and four HipB subunits.	4.68536e-174
CP026113.1\|AUT66187.1\|1919402_1922597_-\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	3.02496e-121
CP026113.1\|AUT65408.1\|1938459_1939293_-\|poly(3-hydroxyalkanoate)-depolymerase	gnl\|CDD\|131294	TIGR02240, Poly3-hydroxyalkanoate_depolymerase, poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid. [Energy metabolism, Other].	1.83081e-106
CP026113.1\|AUT65400.1\|1926564_1928064_+\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|183043	PRK11230, PRK11230, glycolate oxidase subunit GlcD; Provisional.	0
CP026113.1\|AUT65397.1\|1923083_1923947_+\|N-acetyltransferase	gnl\|CDD\|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	9.38393e-36
CP026113.1\|AUT65396.1\|1919074_1919254_-\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	5.96206e-09

>CP026113.1|AUT65402.1|1929144_1930377_+|glycolate-oxidase-iron-sulfur-subunit
MQTNLDSHAKALPDAAEAESILRSCVHCGFCNATCPTYQLLGNELDGPRGRIYLIKQLLEGEAVSDKTQLHLDRCLTCRNCETTCPSGVTYHRLLDIGRAELERRVERPVGERLTRKGLRTVIPRPAVFDALLKTGRALRPLLPASVQVKIPARAAVPAKARPALRHARRVLMLEGCVQSSLSPNTNAAAARVLDRLGISVMSVREAGCCGATDYHLNAQDAGLDRARRNIDAWWPAIEAGAEAVVQTASGCGAFVKEYGHLLRNDALYAAKAARVSAMALDLVEVLAKEPLDVLQPADDAVAMRVAFHCPCTLQHAQKLGGAVESVLTRLGFDLSAVPDAHLCCGSAGTYSITQPELAQKLRDNKMAALESGKPDVIATANVGCQMHLDGAGKTQVRHWIELVEEALDV
>CP026113.1|AUT65401.1|1928063_1929131_+|glycolate-oxidase-subunit-GlcE
MRREFDSMDDSARLVAQVQRAIAQHTPLRIRGSDSKRFLGRDVQGEELDTRSHRGIVAYDPTELVITARAGTPLVELNAALDDADQMLPCEPPLFDGKGTLGGAVATGLSGPRRPWAGSMRDFVLGCRVITGDGDHLRFGGQVMKNVAGYDMSRLLAGSFGSLGVLTEVSLKVLPKPRERRSFALTLGAVEAMRELSAWRKAALPVSGACYVDGKLHVRLEGGSGSVKSAVDRIGGEEIDCAFWDALRDHRLPFFADTRALWRLSLPNATPLMPLPGDALLDWAGAQRWLKSDAAAAEIRQLAHAAGGHATCFTPSPDREPFQPLAAPLLRYQHQLKRRLDPSGVLNPGRLYADL
>CP026113.1|AUT65400.1|1926564_1928064_+|glycolate-oxidase-subunit-GlcD
MSYAYDERIDGPLPSHDKAALVAELQRLVPSMQLLHDNEDLRPFECDGLAAYRTTPMMVALPDSIEQVQALLRFAAARKVPVIARGAGTGLSGGALPLEQGILLVMARFNRILHIDPEASIARVQPGVRNLAISQAAAIHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHNILKLEVLTIDGEHLTIGSEALDSPGFDLLALLTGSEGMLGIVTEVTVKLLTKPQSAKVLLASFDDVEKAGAAVAQIIGAGVIPGGLEMMDNLAIRAAEDFIHAGYPIDAEAILLCELDGAEADVQEDCDRVGAILREAGATGIRIAKDEAERQRFWAGRKNAFPAVGRISPDYYCMDGTIPRRELARVLRGIADLSNEYGLRVANVFHAGDGNMHPLILFDANAPGEMERAETLGAKILELCVEVGGSITGEHGVGREKINQMCVQFSSEELTLFHSLKAAFDPDGLLNPGKNIPTLHRCAEHGAMHIHHGKLPFPELERF
>CP026113.1|AUT66188.1|1925564_1926341_-|transcriptional-regulator-GlcC
MSEPENPTKQSDRKIADVVAERIERLIVDGVLRSGQALPSERRLTDKLGVSRTALREGLKLLRARGIIETAHGKGSFVANLTAQPPQSPLMHLLASQPRTLYDLFEVRGMLEAESARLAALRGTPADYMMITRRYEEMLAAHNAETDPATHARLDHAFHLAICEASHNPVLVHTLRSLTELLLSSVFASVNNLYHRQPHRKRIDRQHARLYNAVTGKLPEQAYRAAADHIDGVRESLQEIEQEEQRLVRATLRLEGWK
>CP026113.1|AUT65399.1|1925001_1925430_+|hypothetical-protein
MQPVELNPKRKRENPLVWIFEPLERDPEYSRERFFNFQAAYLDGLLYLAVASGNEPWNGLVVCTSHDRQAGLLEDFPVLAPHPVLGKWLYVSQTHPEFETVAHEMVALARERDPRMGVLPGKRKRSPDVVEMKSSSRKKKAQ
>CP026113.1|AUT65398.1|1923951_1924818_-|3-hydroxybutyryl-CoA-dehydrogenase
MANKIETIGIVGAGTMGNGIAQVSAVAGLKVVLIDVTDAALEKGIGALTSSLAKLVEKGKIEAAARDAALTRIETSTDYQRLSGVDLVVEAATENTELKIRILRQIESVVSGETLIASNTSSISITALAATLGKPERFVGMHFFNPVPLLQLVEVIRGVQTSDDTAATVRELTERLGKTPVSVKNAPGFVVNRILVPMINEAFFVLADGIATAEEIDAGMRLGANHPIGPLALADLIGLDVCLSVMDVFLKDFGDSKYRACPLLRELVAAGRLGRKTGHGVYRYDPKH
>CP026113.1|AUT65397.1|1923083_1923947_+|N-acetyltransferase
MNEATDTTRDFIVRTMNADEVNLAIEWAAHEGWNPGLHDAHVFRAADPDGFLIGELQGEPVGSISAVAYDAHFGFIGLYIVRPELRGKGLGMRIWQHGIAYLGKRNVGLDGVVAQQPNYRKSGFQLAYRNIRFQGVAETDVTNHPSLVDVRQLPFDKLASYDQRFFPAPREAFLRAWIDQPDAVALASVSEGHISGYGVLRRCREGRKIGPLFADDAQTAEALFTALISHCPGETVALDVPELNTAAVALAERHRLTSVFETARMYTKRAPDIPLARLYGVTSFELG
>CP026113.1|AUT66187.1|1919402_1922597_-|sensor-domain-containing-diguanylate-cyclase
MKRNPFFRLLARLRVGRKLLLIYLLDLTAVVYISGILIHEKYISIDFSNKEIVGNAYIGTVRDALIDVAMAGAGQRPPAARLKSAQTDLASTEARYGAHLESAGLNARVRAALDVLAREAQPTAAQINEALEACRELVTRVGNQSNLILDPDLDSYYAMSLSILRYPALLESVNRIGRQLHEGHEGVHAVRSHDELRTRYLVLEGQLDAVLQGLRSDFSEAGAANHALDSTLGPSMARMLTAVESYRHAARIIVDSNGEVDPTLLSIVDVQQQTLVASVQDTWRSTADQLDDLLHARVRGLFSRMWLHLGTALFLLCSILGMVYFVAQQISRPLRQLARVMDTVRRTGDHTVRASWHSQDEIGQLVRGFNEMLEQLDRERDVQKELAATARASAAQHALVESTPVPMMVTAVPGHEVLHANQPALYWLNGVTTDPWAYGLDSSVRARFFQQLSDRDAVDEFEVRWKASTEPTWAMLSARRLNFQGRDAVLTAFTPINQIKLMEQRLELWAKVFEASSEAILILDQERRLLTANASFYRATGYRAEDIAGQPPAFIVASANGGAVITALAALVDRSSSWNGEAQIRRRQGGDYPAWLMISAVRDKRGSVSHYICTLIDITDRKKSEARIEFLAEHDVLTELPNRALFTKRLGVALEHAKQAQQRVAVLFIDLDRFKDINDSLGHHIGDGLLRSVSRRLVQAVRSSDTVSRLGGDEFTMILADAGSAADVARTIDERLLPLVREPHAIGGVTLQVACSAGVALYPDDGTDIETLMQNADAAMYQAKAAGRNLVKFFSPDMAERARQRLALEACMRTAIERHELRLAFQPCLDAQTGALVSVEGLLRWTHPQLGAVTPAQFIPIAEETRLIIPIGAWVIEEACRQLARWRDDEMRELRMSINLSAIQLRDADIVDTLRRSLAMHGVAPQRLELEITETVLMDSAENYLDAIRAIRALGVKLSLDDFGTGYSSLSYLNRFPLDRLKIDRAFVRDMLDAPADLAVIKAIIELGHELGLRVVAEGVENEDEANTLRSIGCDELQGFLYSPAISAEELETWAAQRVAADVE
>CP026113.1|AUT65396.1|1919074_1919254_-|CsbD-family-protein
MNRDQIKGVTQQVKGKVNEVVGKVTGNRTQQLKGDLQQATGTARKAFGDGKEKIRRLGR
>CP026113.1|AUT65395.1|1917725_1919036_+|MFS-transporter
MQPELESRVARKLMLRIIPFVMLLYFVSFLDRVNVGFAAMTMNKAIGLSPTAFGFGGGLFFIGYFLFEVPSNLILHRVGARIWIARVMVTWGIVSAASAFVTGPTSFYVLRFVLGVAEAGFFPGIILYLSLWFPGKQRAAAAAWFMAAAPISTAIGSPISGAIMQLPPMFGLADWQLLYIIEAVPAVVLGFVVLKFLTDTPSKAHWLKDDEREWLIAKLKAEADERKGHAGHTAGALSALRDPRVLALALIYFGTSAGLYTLGLWAPLIIRQYGFSALQTGLLTGIPSVLAVIAMVLWARHSDRTEERTWHVVIPCALACVGFIFAGQAGTALLIVLALVVVNVGISAAKAPLWAMPSMFLSGAGAAAGIAMINSVGNLGGFVGPFAIGWLKNVTGGYAAGLYVVGATLAVSAAVTLMLSRKAAQQPATACMRHDH
>CP026113.1|AUT65403.1|1931417_1932767_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MGRPSHARALSVWTNGLRVGTWRIPSRGDMEFQYDRDWMASPAGRPLSLSLPFGIDDAPLRGERVRNYFDNLLPDSEPIRRRLATRFRTATADAFDLLEAIGRDCVGAAQLLAEDAQPEGFDRIEGTPMSDDEIAEMLARTVTSGGPGAGRDDEYDDFRISLAGAQEKTAFLWHKKKWMRPHGATPTTHIFKLPLGLVGNKKADWTTSVENEWLCLALFRAFGLPAPNADILNFGDQKVLAVERFDRRLHPSKKWILRLPQEDFCQVLGKPSHQRYEADGGPGMIDIAGVLRQSERPDADLETFLSAQILFWMLAAPDGHAKNFSVHLMPGGRYALTPLYDIMSIWPVEGDGGNQWSWHKAKLAMAVAGKNRHYLMKDIQRRNFNAMAARCFYGSDAEPLIGRLIDATPTAIDAVAAAMPAGFPERVAERIFDGLRISVERLAAMPPGV
>CP026113.1|AUT65404.1|1932769_1933018_-|XRE-family-transcriptional-regulator
MKRTLINPHQLGQILRTARRAKGLSQAQAASRVGLSQSRLSAIELNPDSITSEQLFALLAMYGLELSVQTRPASAAPTQENW
>CP026113.1|AUT65405.1|1933230_1934178_+|chemotaxis-protein-CheV
MDHQSNEARTTLTSSNQFELLLFRLGTVPGDSAHELYGINVFKVREILTMPVITPIVGASRCVMGAVNIRGQIIPVVDLPKLMGCEPTRGLNILLVTEFARTTQGFAVQEVDDIVRLDWNQVLPAEAAAGSGLVTSIARIDGNTGDSRLAQVVDVEQVLRDVLPAHQHEPAAPETAAFQVPPGTRILAADDSGLARTMIQQALGDIGAECIMAKTGEEAWQILVKLADEAKRNKTRLRDAVSMVLTDLEMPEVDGFTLTRRIRADERTRDIPVVIHSSLTGAANEAHVRNAGANGYVAKFQAAELAETIRHAIGA
>CP026113.1|AUT65406.1|1934427_1937160_+|helix-turn-helix-transcriptional-regulator
MHVAEAVSPTSPPLFLATKVYPPRLPAGLIDRPRLVALADKAESRRLTVIKAPAGFGKTSLALAWLNRLTASGAVVAWLSLDGDDDEPARFFHHLAQALHNACSNVGASAISLTTEASLMPAQSIGSTLINELFEVDDEIYLFIDDYHLIGQPAIHDAMAYFIANIPSNTHVVLCTRTDPPLPLAQLSAKNELMEIDAAALRFNIDETRSFVEHECPGGRHAAAIKSLFAHTEGWAAALRISASVLSRDEGKTLQDMSPPSGASRPFAAYLEDMLRRLPAEMVGFMLRTSILDRLCAPLCEAVTGKAAGQDMLESISTRQLLLEPLDIEGHWFRYHHLMGEYLRRRLEVQHPTEVAGLHRRACRWYAEQEQWTDAVRHAIAAGDPEHAVSLMGHCAMTLVTKGDLLTLLGWQRQFPAHLMRGQVGITLAIAWGMALALRFDEALAMLDDIEHDAGAGNDEGARNIRWECQAIRSVIAGLQDDAPRALAIAQTCLEHPSTDSWTTNVASNVVRFGHWKAGNLGALYATPWIPYSIEEDQRNVFASVYRLCLLGHAEMQQMHFVLAERYFTESIRLAERHSGPKSIAAVLCAPMIAQIWYEQGRLDEAEALLVDLMPLIDLAVLLDSTFFAYRVLVRIAISRANFEHAYALLDHAQSLGYMRGWDRMIAGVHVERARLYLREGRITEAAACVVHLDQLADARAAASKPASPEIDTFRAIAVGSLAMEQRRTNEAVESITAALRSVESRHNDYLALRLRTVLALVWMRANDQARAVEIFRDVLNTSHDIYRSIIDQGATIGPLLQAVRDDTRSTSTTKETLAYLDRLLDGWRALHEPGAKPASDTVREALSARERSIVELIAQGQSNKEIARTLGISPETVKTYVKNIFVKLNVDKRAQAVARAQALGLVAAG
>CP026113.1|AUT65407.1|1937179_1938463_-|DUF445-domain-containing-protein
MSFFVGGDNGARPAAPNAREDDKVHGLDRMRRTATALLLLMCVLLLACVVWQADHAWLAWPRAFAEAGMAGAIADWYAVVALFRHPLGLRLPHTAIIPRNQPRIAVSLGSFVEEHFLQPELIIGRLSGHNAAQALALWLAQPENSRGVTNVIADSLAGLLDDMDEADVAWLFDRVVVPQLRTLDISRVAGDALDVLTQGDRHRPLLDHGLVALEKWLTSNADLIKAKFSEASRYTPAPLDAYIVRKFIEGILALLHEVAASPDHPLRLQFDEALQTLIVQLRTSAAHRRFGKSLLRDCVRHFRRPGRYRALLDWLRTRVIADLGREQSAVRDTLARGLMSLGRRIGRKPSIQRKLNAWWIALARELVVRYRHLFSALITEVVKSWNADEVSRKIEVQIGRDLQYVRINGTFVGGMVGVLIHAVTLAA
>CP026113.1|AUT65408.1|1938459_1939293_-|poly(3-hydroxyalkanoate)-depolymerase
MHINPESACSMQIRTIDLDGQTLRVATWQGSDASPPLLIFNGIGANLELVEPFVAALDDVSVIIFDVPGVGGSPAPVVPYRFSTLSVLADKLLTRLGHDGEVDVLGVSWGGALAQQFARLYPRRCRRLVLAATSPGVLMVPGKLSVLSKMIGPRRYTDPAYLQEVGADIYGGAYRRDPSLLKAHSRHIQPPRGRGYLYQLLAASGWTSLPWLGSLRQPTLVMHGSDDPIVPLTNARILAARIRDATLYVIDDGHLFLISRANEVAPVVRRFLRQEES
>CP026113.1|AUT65409.1|1939368_1939794_-|chemotaxis-protein
MESTSKNSIFTEYTKLFGQFKLPGIDISAMVESRRKDIEAVAEANTTALAGVQSLAQKQSEILRTSLGELQAFVARCTQPGGQSIANAGDTVKQTLHKALVDVQDLADTAYRAQSDSVAVVTKRVAERVEELKALLQPKKK
>CP026113.1|AUT65410.1|1939837_1941568_-|class-II-poly(R)-hydroxyalkanoic-acid-synthase
MAETEMSITTSTTQRTAQSAPPDDLAASAAEGMLGPNPFVGLRPRDILATVQQIGAQALRQPSLVVEQEAALVRDLIAVLGGSADSKPPQGDKRFTDPAWQDNAMYRMTMQGYVAWRNALTGFVDRSALDARTKERAQFVLSLFTDAVSPTNTLLGNPAALKKVIDSGGASLLGGVRNLVTDMLQNQGMPAQVDKTAFKVGENLGTSPGAVVFRNEVLELIQYAPATEHVYARPQLIVPPQINKFYVFDLSEGKSIVDYLVKNEFQTFVVSWRNPTAEQSHWDLDTYVAALLEAIAAIREITGSDDVNLHGACSGAMTISALLGHLASRGDKSVHAATLMVAVLDNTADSQLGLFATPEAIAAAKQNSVSKGVLAGEEMGRVFAWMRPNDLVWNYWVNNYLLGKAPPAFDILYWNNDATRLPARMHGQLLDIFTGNLFSKPRALTVLGTPIDLSEVKCDTYVVAGMTDHITPWKGVYNTARIFGGETRFVLSSAGHIQSLINPPGNPKAKFFLNPTLPADADAWLANAQPEKDSWWGNWSKWLAERSGERRSAPASVGSVRHPAGVKAPGTYVLEA
>CP026113.1|AUT65411.1|1941601_1942066_-|MaoC-family-dehydratase
MSIKDYSIATIDSCVGRELGVSDWVTVDQPRIDAFAACTGDRQWIHVDVERAKRESPFGGTIAHGYLTLSLLAALAIEIGLIPPDASAGLNYGLDKVRFMTPVKAGARVRSRVTLMSVEKKEGGRIIIKTMNELQIEGEEKPALIAESLAMLVA
>CP026113.1|AUT65412.1|1942093_1943737_-|fatty-acid--CoA-ligase
MQDAGHDSTPTPYAYPLLIKQLLHTTFIQAPDQEIVYRGQLRMTYTTMRERIARLANGLHDLGVRHGTTVAVMDWDSHRYLESYFAVPMMGAVLQTVNVRLSQAEIAYTINHSGAEVLFVHTDFLPVVEAIKDQLETVRVFVWIDEPGSDACEHTIPFATEYEAMLAASATHYDFPDFDENTRATTFYTTGTTGLPKGVYFSHRQLVLHTITLMAALASPVAGQRFHRGDVYMPLTPMFHVHAWGMPYIATVLGVKQVYPGRYVPERLVQLVRDEGVTFSHCVSTILHMLLSCDEAKHVDLGKWKIVIGGGALPHGLARAALDRGIDVFVGYGMSETCPVLSLAQLPLHTEPLDLDEEVRLRCKTGFPVPLVDLRIVNEQMEDVPRDGKAYGEIVVRTPWLTQGYLNNPEASAQLWAGGYLHTQDIANIDTTGNVQITDRIKDVIKSGGEWISSLEIESLISLHPGVAEVAVIGIKDEKWGERPVALVVLRQDAQVSEDDVKQHVLGFSKTGQISKYAVPQIVRFVDALQKTSVGKTNKKWLREQFA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	1079673-1079703	2	0.935
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	270527-270557	3	0.903
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NC_010625	Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence	225412-225442	4	0.871
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	359254-359284	4	0.871
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1271644-1271674	4	0.871
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	188893-188951	5	0.915
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	769956-769986	6	0.806
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1976710-1976768	6	0.898
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	1723991-1724049	6	0.898
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1856615-1856673	6	0.898
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1348357-1348415	6	0.898
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1461100-1461158	6	0.898
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1531748-1531778	7	0.774
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1314646-1314676	7	0.774
CP026113_2	2.1\|793668\|31\|CP026113\|CRISPRCasFinder	793668-793698	31	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	768111-768141	7	0.774
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP013104	Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence	9378-9436	7	0.881
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	507744-507802	7	0.881
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1036204-1036262	7	0.881
CP026113_3	3.1\|1575762\|59\|CP026113\|CRISPRCasFinder	1575762-1575820	59	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1316864-1316922	7	0.881

1. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 2, identity: 0.935

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
acgaagcacgaaggcaaatcgcggatgccaa	Protospacer
 .*****************************

2. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.903

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
gtgaagcacgaaggcaaatcgcggatgcccg	Protospacer
 **************************** .

3. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NC_010625 (Paraburkholderia phymatum STM815 plasmid pBPHY01, complete sequence) position: , mismatch: 4, identity: 0.871

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
atgaagcccgaaggcaaaacgcggatgccag	Protospacer
 ****** ********** ***********.

4. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.871

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
atgaagcacgaaagcaaatcgcggatgcctg	Protospacer
 ***********.**************** .

5. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 4, identity: 0.871

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
ttgaagcacgaaggcaaaatgcggatgccag	Protospacer
.***************** .**********.

6. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 5, identity: 0.915

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
tcgctggcatccgcgttacgttagcgtgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
*. .********************* ********************************

7. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.806

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
ccgctgcgcgaaggcaaaacgcggatgccag	Protospacer
*.*  **.********** ***********.

8. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.898

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
tcgctggcatccgcgttgcgttagcgtgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
*. .*************.******* ********************************

9. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.898

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
tcgctggcatccgcgttacgttagctcgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
*. .*********************..*******************************

10. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.898

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gcgctggcatccgcgttacgttagcgtgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
 . .********************* ********************************

11. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.898

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gtgctggcatccgcgttacgttagcgtgcttcacgcgtcgcccctgtgcggggcggcac	Protospacer
 * .********************* ******* ************************

12. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.898

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
tcgctggcatccgcgttacgttagcgtgcttcacgcgtcgcccctgtgcggggcggcac	Protospacer
*. .********************* ******* ************************

13. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
tgccagcgcaaaggcaaatcgcggatgccag	Protospacer
.   ***.*.********************.

14. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
ccgccccgcgagggcaaatcgcggatgccag	Protospacer
*.*   *.***.******************.

15. spacer 2.1|793668|31|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.774

ctgaagcacgaaggcaaatcgcggatgccaa	CRISPR spacer
ccgctccgcgaaggcaaagcgcggatgccag	Protospacer
*.*   *.********** ***********.

16. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.881

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gcgctggcatccgcgttacgttagctcgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
 . .*********************..*******************************

17. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.881

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gcgctggcatccgcgttacgttagcgtgcttcacgcgtcgcccctgtgcggggcggcac	Protospacer
 . .********************* ******* ************************

18. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.881

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gcgctggcatccgcgttacgttagcgtgcttcacgcgtcgcccctgtgcggggcggcac	Protospacer
 . .********************* ******* ************************

19. spacer 3.1|1575762|59|CP026113|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.881

tttttggcatccgcgttacgttagcctgcttcaggcgtcgcccctgtgcggggcggcag	CRISPR spacer
gcgctggcatccgcgtttcgttagcgtgcttcaggcgtcgcccctgtgcggggcggcac	Protospacer
 . .************* ******* ********************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage