CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP026107	Paraburkholderia hospita strain DSM 17164 chromosome 3, complete sequence	2 crisprs	csa3	2	1	1
CP026108	Paraburkholderia hospita strain DSM 17164 chromosome 4, complete sequence	1 crisprs	WYL	0	1	7
CP026110	Paraburkholderia hospita strain DSM 17164 plasmid pEMT1, complete sequence	0 crisprs	NA	0	0	0
CP026105	Paraburkholderia hospita strain DSM 17164 chromosome 1, complete sequence	2 crisprs	RT,DEDDh,csa3,DinG,cas3,c2c9_V-U4,cas14j,WYL	1	1	5
CP026106	Paraburkholderia hospita strain DSM 17164 chromosome 2, complete sequence	7 crisprs	csa3,WYL,cas3,DinG	0	6	0
CP026109	Paraburkholderia hospita strain DSM 17164 chromosome 5, complete sequence	0 crisprs	cas3	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026105_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026105_1

655921-656003

Orphan

Consensus_repeat	Method
ACGAAGGCATAACGCGGATGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026105_1

>merge|CP026105|1|655921-656003|CRISPRCasFinder
ACGAAGGCATAACGCGGATGCCAGCGAAAAGGCAAACCCACAGGGGCGACGCATGAAGCACGAAGGCAAAACGCGGATGCCAG

>CP026105|1|1|655921-656003|CRISPRCasFinder
ACGAAGGCATAACGCGGATGCCAG	CGAAAAGGCAAACCCACAGGGGCGACGCATGAAGC
ACGAAGGCAAAACGCGGATGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP026105.1\|AUT67399.1\|647189_648344_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|376655
CP026105.1\|AUT67411.1\|659925_660861_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
CP026105.1\|AUT70082.1\|662655_663147_+\|Cys-tRNA(Pro)-deacylase	unknown	unknown	gnl\|CDD\|237976
CP026105.1\|AUT67414.1\|664015_664501_-\|YajQ-family-cyclic-di-GMP-binding-protein	unknown	unknown	gnl\|CDD\|180061
CP026105.1\|AUT67403.1\|651626_652475_-\|thioredoxin	unknown	unknown	gnl\|CDD\|225660
CP026105.1\|AUT67410.1\|659458_659929_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
CP026105.1\|AUT70083.1\|664669_665710_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|234593
CP026105.1\|AUT67404.1\|652593_653475_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
CP026105.1\|AUT67398.1\|646587_647139_+\|peptide-methionine-(S)-S-oxide-reductase	unknown	unknown	gnl\|CDD\|237597
CP026105.1\|AUT70081.1\|653638_653875_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226863
CP026105.1\|AUT67405.1\|653874_654276_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350303
CP026105.1\|AUT67409.1\|658168_659425_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
CP026105.1\|AUT67413.1\|663290_663932_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	unknown	unknown	gnl\|CDD\|234691
CP026105.1\|AUT67408.1\|657596_658151_-\|bifunctional-tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE/phosphotransferase	unknown	unknown	gnl\|CDD\|376771
CP026105.1\|AUT67412.1\|660885_662457_-\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341259
CP026105.1\|AUT67402.1\|650686_651547_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	unknown	unknown	gnl\|CDD\|224100
CP026105.1\|AUT67406.1\|654341_655223_+\|O-acetylserine/cysteine-exporter	unknown	unknown	gnl\|CDD\|183142
CP026105.1\|AUT67407.1\|656055_657615_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|182376
CP026105.1\|AUT67401.1\|649836_650475_-\|pyridoxamine-5'-phosphate-oxidase	unknown	unknown	gnl\|CDD\|273138
CP026105.1\|AUT67400.1\|648445_649660_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139

Protein	Function_ID	Function_description	E-value
CP026105.1\|AUT67399.1\|647189_648344_-\|DUF72-domain-containing-protein	gnl\|CDD\|376655	pfam01904, DUF72, Protein of unknown function DUF72. The function of this family is unknown.	1.04815e-41
CP026105.1\|AUT67411.1\|659925_660861_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.26493e-165
CP026105.1\|AUT70082.1\|662655_663147_+\|Cys-tRNA(Pro)-deacylase	gnl\|CDD\|237976	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.	4.78728e-60
CP026105.1\|AUT67414.1\|664015_664501_-\|YajQ-family-cyclic-di-GMP-binding-protein	gnl\|CDD\|180061	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed.	1.13279e-87
CP026105.1\|AUT67403.1\|651626_652475_-\|thioredoxin	gnl\|CDD\|225660	COG3118, COG3118, Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones].	3.53773e-93
CP026105.1\|AUT67410.1\|659458_659929_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	4.3001e-41
CP026105.1\|AUT70083.1\|664669_665710_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|234593	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase.	0
CP026105.1\|AUT67404.1\|652593_653475_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.49235e-83
CP026105.1\|AUT67398.1\|646587_647139_+\|peptide-methionine-(S)-S-oxide-reductase	gnl\|CDD\|237597	PRK14054, PRK14054, peptide-methionine (S)-S-oxide reductase.	7.57943e-99
CP026105.1\|AUT70081.1\|653638_653875_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|226863	COG4456, VagC, Virulence-associated protein and related proteins [Function unknown].	1.67785e-09
CP026105.1\|AUT67405.1\|653874_654276_+\|PIN-domain-containing-protein	gnl\|CDD\|350303	cd18736, PIN_CcVapC1-like, VapC-like PIN domain of Caulobacter Crescentus VapC1-like and related proteins. This subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Caulobacter Crescentus VapC1, a ribonuclease toxin of the VapBC toxin/antitoxin (TA) system. This subfamily belongs to the PIN_VapC4-5_FitB-like subfamily of the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC TA systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. FitB is a toxin of the FitAB TA system. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	4.58421e-66
CP026105.1\|AUT67409.1\|658168_659425_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
CP026105.1\|AUT67413.1\|663290_663932_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsY	gnl\|CDD\|234691	PRK00220, PRK00220, glycerol-3-phosphate 1-O-acyltransferase PlsY.	3.78928e-89
CP026105.1\|AUT67408.1\|657596_658151_-\|bifunctional-tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE/phosphotransferase	gnl\|CDD\|376771	pfam02367, TsaE, Threonylcarbamoyl adenosine biosynthesis protein TsaE. This family of proteins is involved in the synthesis of threonylcarbamoyl adenosine (t(6)A).	7.72843e-52
CP026105.1\|AUT67412.1\|660885_662457_-\|AMP-binding-protein	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	2.33172e-139
CP026105.1\|AUT67402.1\|650686_651547_+\|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA	gnl\|CDD\|224100	COG1179, COG1179, Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism].	1.5796e-120
CP026105.1\|AUT67406.1\|654341_655223_+\|O-acetylserine/cysteine-exporter	gnl\|CDD\|183142	PRK11453, PRK11453, O-acetylserine/cysteine exporter.	7.22912e-91
CP026105.1\|AUT67407.1\|656055_657615_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|182376	PRK10319, PRK10319, N-acetylmuramoyl-L-alanine amidase AmiA.	6.16176e-83
CP026105.1\|AUT67401.1\|649836_650475_-\|pyridoxamine-5'-phosphate-oxidase	gnl\|CDD\|273138	TIGR00558, Pyridoxine/pyridoxamine_5'-phosphate_oxidase, pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from Pfam but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer. [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine].	2.87115e-124
CP026105.1\|AUT67400.1\|648445_649660_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	7.50765e-132

>CP026105.1|AUT67406.1|654341_655223_+|O-acetylserine/cysteine-exporter
MSPKDLLLALVVVVAWGVNFVVIKVGLHGVPPMLLGALRFMLAAFPAVFFIKRPQMPWRWLIAYGATISLGQFAFLFSAMYVGMPAGLASLVLQAQAFFTLLFAALFLHERFRVQNVLGLVVAAIGLAVIGLQGGAAMTLAGFILTLCAAVMWALGNIVTKKVGKVDLVGLVVWGSLIPPVPFFVLSYLLEGPQRIGAALTGIGASSVFAIVYLAFVATLVGYGLWSRLLSKYPAGQVAPFSLLVPIVGLASASLFLGESLSGAEIGGAVLVMAGLAVNVFGGWVVQRLPLAR
>CP026105.1|AUT67405.1|653874_654276_+|PIN-domain-containing-protein
MPRFMLDTNMCIYLMKNQPEEVARRFEQCFIGDVVMSAITYAELEYGVAVCANRARERRNLAALIEDIPVLPFDVKAASAYGPIREATRERKKDHFDKLIAAHAVSVGVTLVTNNERDFAAYPGLNVENWLNG
>CP026105.1|AUT70081.1|653638_653875_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MPMTRIFRNGNSQAVRIPAELAYESLDMEVEIERVGDELRIRPARRPLTGVLRKFAKFGDDFMSEGRGDQEQADREGL
>CP026105.1|AUT67404.1|652593_653475_-|pirin-family-protein
MSSSIKAVLKPHVRDIGNLAVRRVLPAMAARLVGPFIFFDHMGPATLPAGTGLDVRPHPHIGLATVTYLFEGAIMHRDSLGSEQKIVPGDVNWMTAGRGIVHSERTPEPDRTNGSTVHGIQTWVALPLADEDAEPSFEHHAGATLPEIERNGVTLRIIAGTSFGQTSPARTFSGTLYAAAHFAPGSVLALEPEHDERGVYLVDGDLSLDGEPLEVATMAVLTPGETVTLASAKGATVMLLGGEKLDGERFIEWNFVASSREKIERAKLAWTNQEMGKVPGETEWIPLPERKPR
>CP026105.1|AUT67403.1|651626_652475_-|thioredoxin
MDTTLATFEKDVISASMLAPVLVDFWAPWCGPCKTLGPMLEKLEAEYEGKWRLVKVNVDENQELAAHFQVRSIPHVVAFADGRPVDQFIGVLPEGQLREFLDRLVPDGAEASRAEAAVAIAEGRREDAYDALKAALAYDPGFDEARLDLMELLLEDNRAEEAQKENDLLSPKTTQGIDARYNAIKTRLDAVDAASDLPPTDALEAAVASNPDDLEARFDLASALIARRKYDPALEHLLAIVTRDRTFREDIGRKTMLSVFDLAAHQPELVAKWRRKLSALLN
>CP026105.1|AUT67402.1|650686_651547_+|tRNA-cyclic-N6-threonylcarbamoyladenosine(37)-synthase-TcdA
MSTPLVTEHSDITTDSSAHETADRARRFGGVARLYGAPALAAFERAHVAVIGIGGVGSWAAEALARTAIGRITLIDLDNVAESNTNRQIHALDGNYGKPKVDAMAERIRLIDPQCDVRVIEDFIEPGNFDTVLGGGFDYVVDAIDSVRTKTALIAWCVEHKQPLITVGGAGGQLDPTRIRIDDLAQTIQDPLLSKVRGQLRKQHGFPRGPKAKFKVSAVYSDEPLIYPEAAVCDIDEEAEHVTTSPGHHGPVGLNCAGFGSSVCVTASFGFAAVAHVLRALAKNAA
>CP026105.1|AUT67401.1|649836_650475_-|pyridoxamine-5'-phosphate-oxidase
MSTLADLRKNYSLGSLDIADADPNPFRQFDVWFKQAIDAQLPEPNTMTLATVDPRGRPSARIVLIKGVDERGFVFFTNYESRKGLDLAQNPHASLLFYWIELERQVRVEGAVVKTSDAESDTYFASRPVGSRIGAWASEQSKVIESRAALEAREREFIAQYGDSPPRPPHWGGYRLIPDAIEFWQGRPSRLHDRLLYTRSGSADWTIARLSP
>CP026105.1|AUT67400.1|648445_649660_-|class-I-SAM-dependent-methyltransferase
MFWEKKLAQWVDEVKTKANIPARLVLWDGQQHDFGTFAAPQVTLKVNSASALPLLLEPSLDNLGEAYVKGKIDIEGKLSDIINISYSLARSTVTSASKLARVRRYFNHSKTSDKKAIQYHYDVSNEFYKLWLDENMVYSCAYFENGDEDLATAQIKKIDHILTKIQVQPGQRLLDIGCGWGALVLRAAQKFGAKCVGVTLSQNQFDLATQRVKAAGLEGQIEIRLQDYRDVQGQFDRITSVGMFEHVGRKNMPGYFQKIHDLLADDGIAMNHGITSTDYNSGETALGGGEFIDRYVFPDGELPHISLALETMQRGGLEAFDIESLRRHYARTLDIWAENFEARAAEAKSLVDDERFRIWRVYLAGCAYAFENDDVSIYQVVCRKAGRSATTLPWSRRFMYEKAL
>CP026105.1|AUT67399.1|647189_648344_-|DUF72-domain-containing-protein
MEEEAAPETPDASLQLDMFGNPVEQAPVAVASVPKASSETAAAPSDAPPKKRRARDVLAAPPSDEVIHLASQLPPQVHLGTSTWSFPGWKGIVYGDDYSNSKLSRDGLTAYGAHPLLRTVSIDRSFYAPLTLTDYLRYAQQVPDHFRFIVKAPALVTDATVRAERGEPVSENPCFLNAQLAIAEFVRPCIDGLGAKAGALVFQFSPLPNEMLARPALFVDRLTAFLAALPPLEGDTCYAVEIRDASMLTPRLIRALKATGVRYCVGIHARMPDPSRQAAALALLDEAPSGPLIVRWSLHGGFKYEQAKAKYEPFDKLVDEDPDTRTALAELAARYAIAGQPVLIAANNKAEGSAPLTCVKLAAQIAAACERLRGAQKENAAQSA
>CP026105.1|AUT67398.1|646587_647139_+|peptide-methionine-(S)-S-oxide-reductase
MSQSVETATLGGGCFWCLEAVYLGVDGVTSVESGYAGGQVDNPSYEQVCDGDTGHAEVVNVEFDPARITYREILDIFFAIHDPTQLNRQGNDVGTQYRSVIFTHSDAQRDTALQAIREIGAEGIYDGQIVTQVLPLDGNYFAAEVYHQNYFAQHPDQGYCAFVVAPKVAKFRQKFAHRIKAGA
>CP026105.1|AUT67407.1|656055_657615_-|N-acetylmuramoyl-L-alanine-amidase
MSRKMLIKPFRSIESAATATHNWRRRQILRAGASTLVLGLVAPRLAWAQSVLGVRVWPARDYTRVTIESDQPLQNTQQLLQGPDRLVVDLSGLDLDQALRDLVSKIAPNDPQIQSVRVGQYQPHVVRMVFDLKGSVKPQVFTLPPVGTYKYRLVFDLYPAVAPDPLMELLAQSERKQQQLDDNAAPPAAPPAATLSGPSAPPADNTDAFFEKYAQNNAPSSPSPAPRPPVHTAPAPTPHVPSKPTPTPAPPVIARNNDNDADNDGDSGDDAYKFTTPKKGSNTVRLLTVAIDPGHGGEDPGAIGGSGTYEKHVALDIAKKLRAKIDAQPNMRAMMTRDADFFVPLNVRVQKARRVGADLFVSIHADAFTTPEASGSSVFALSEHGASSAAARWMANKENSSDQIGGINIKSADASVNRALFDMSTTAQIRDSMRYGNFVLKEIGGINRLHKGSVEQAGFAVLKAPDIPSILVETAFISNPDEERRLNDDAYREKMASAIMTGIKRYFAANPPLAKNRMT
>CP026105.1|AUT67408.1|657596_658151_-|bifunctional-tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE/phosphotransferase
MPDHTGPANRPSAAVLLERQFALADEAATMAFGERFAHAIDGVRSEASATVHDGFNGLQVQLHGDLGAGKTTLVRATLRALGHAGRVRSPTYTLVEPYAVERPDGELELYHFDLYRFTDPAEWADAGFREYFDSGAICLVEWPERAGTLLGVPDLVFSLDVDGDGRMLIARAYSEPGKACLERC
>CP026105.1|AUT67409.1|658168_659425_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MNQGQQHSMSDPHRDPHSPLETTNNEAPVTRRHDDAQLAALASRIKGWGRELGFGAVGISDIDLSHAEAGLAAWLDAGCHGEMDYMAKHGMKRARPAELVAGTRRVISVRMAYLPASSGARKGDESAVADVQHDWRLDERARLEDPTAAVVSIYARGRDYHKVMRNRLQQLAERIEAEIGPYGYRVFTDSAPVLEVELAQKAGTGWRGKHTLLLQRDAGSLFFLGEIFVDVPLPTDAETSPESAPETPGAHCGSCTRCIGACPTGAIVAPYQVDARRCISYLTIELKGSIPQDLRPLIGNRVYGCDDCQLVCPWNKFAQAAPVADFDVRHGLDRASLVELFGWSASDFDTRMQGSAIRRIGYECWLRNLAVGMGNALRAARDTLSADARAAIVDALRQRADDPSPLVREHVEWALEAA
>CP026105.1|AUT67410.1|659458_659929_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MFNAVIDAPFGKVGVRLEGEAVREIVYLPDSVPNVEPDSALAKQAVEQIEQYLQHASASFDLPLADVGTPFQRRVWKAISEIPPGVVVTYGQLAKQIGSVPRAVGQACGSNFFPIVIPCHRVVGAGGIGGFAHTGGDGYYRNVKRWLLKHEGVPYA
>CP026105.1|AUT67411.1|659925_660861_+|site-specific-tyrosine-recombinase-XerD
MTDVLTEDAQPASPLLLTSGASIDAFCDALWLEHGLARNTLDAYRRDLRLFSEWLASARDSSLDTASEADLTAYSAVRSGDKSTSANRRLSVFRRYYAWAVREHRASADPTLRIRSAKQPPRFPSTLTEAQVEALLGAPDVTTPLGLRDRTMLELMYASGLRVSELVTLKTVEVGLNEGVVRVMGKGSKERMIPFGEEAHGWIERYLRESRPALLGQRATDALFVTARAEGMTRQQFWNIIKRHAMTAHVHAPLSPHTLRHAFATHLLNHGADLRVVQLLLGHTDISTTQIYTHVARERLRTLHAAHHPRG
>CP026105.1|AUT67412.1|660885_662457_-|AMP-binding-protein
MNSAQHSPAGAQHVDVAALLAALPERIADIPKLIAARDPQHPALIEDDRRLTRAQLVEAVDAIAALLAEQGVRAGDRVMIVAENSVVQIVLLFAAAKLNAWALVSNARLSAAELDAIRAHAQPRLVAYAVDASPDAQQHAERHGAQPARQIAVDIGGWSYALDDKARVEPVETTSDRQCAALIYTTGTTGSPKGVMLSHRNLLFIAAMSSTLRRVNADDVVYAVLPVSHVYGLASVCLGSLFAGATLRLAPRFAPEAVRRALAEERVSILQGVPAMHAKLLEYLQAQRLPWSAPRLRFAYSGGSPLDAALKSRVESVYGVALHNGYGTTESSPTVSQTMIDAPRTDCSVGEAIPGIEVRFVGLDGVDVAQGEVGELWVRGPNVMLGYYRNPQQTQAAVTVDGWLKTGDLARQDADGALHIVGRSKELIIRSGFNVYPAEVEHVLNAHPDVVQSAVIGRAVEGNEEVVAFVELTGGAKVTPADLAAWCEARLAPYKRPAEIKVLAALPAASTGKILKHRLRDLV
>CP026105.1|AUT70082.1|662655_663147_+|Cys-tRNA(Pro)-deacylase
MSKSRHVSETPATQFLRRHKVEFGEHPYDYVDHGGTGESARQLGVDEHQVVKTLVMEDESAKPLIVLMHGDRTVSTKNLARQIGAKRVEPCKPEVASRHSGYMIGGTSPFGTKKAMPVYVESTILELDRIFINGGRRGFLVSIEPAVVTSLLHAKPVQCAIVE
>CP026105.1|AUT67413.1|663290_663932_+|glycerol-3-phosphate-1-O-acyltransferase-PlsY
MENLIVAVVAYLIGSVSFAVVVSAAMGLADPRSYGSKNPGATNVLRSGNKKAAILTLLGDAFKGWLAVWLTGHFSAHFGLDDTSVAIAAIAVFVGHLYPVFFRFKGGKGVATAAGVLLAINPILGIATLATWVIVAFFTRYSSLAALCAAIFAPLFDGFLFGANVIAVAIVAMSALLIWRHRANIAKLVAGQESRIGDKKKAEAAARAASNKH
>CP026105.1|AUT67414.1|664015_664501_-|YajQ-family-cyclic-di-GMP-binding-protein
MPSFDVVSEANMIEVKNAIEQSNKEISTRFDFKGSDARVEQKERELTAFADDEFKLGQVKDVLVSKMAKRNVDVRFLDYGKIEKIGGDKVKQVVTVKKGVSGDLAKKIVRLVKDSKIKVQASIQGDAVRVTGTKRDDLQSVIAMLRKDVTDTPLDFNNFRD
>CP026105.1|AUT70083.1|664669_665710_+|UDP-N-acetylmuramate-dehydrogenase
MSQSEPLSFIADFPLKPHNTFGFDVRARLACHIESEAQLLAAVRDPRAAGLRRLVLGGGSNVVLTGDFDGLVLLIGLRGRKVIREDDDAWYVEAAAGENWHEFVSWTLAEGMPGLENLALIPGTVGAAPIQNIGAYGLEMCERFVSLRAIELATGETIELDAGACRFGYRDSFFKQEGRERFVIVSVTFRLPKAWVPRAGYADIARELAAVGLGDSTPSPQAIFDAVVAVRRVKLPDPLALGNAGSFFKNPVVEAAQFDALRAKEPEVVSYRQADGRVKLAAGWLIDRCGWKGRSMGAAGVHERQALVLVNHGGASGAEVLALAKAIQQDVAQRFGVELEAEPVCL

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Crispr_ID: CP026105_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026105_2

1521879-1521956

Orphan

Consensus_repeat	Method
CGCTAAAGCGCCAACTCCGGTCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026105_2

>merge|CP026105|2|1521879-1521956|CRISPRCasFinder
CGCTAAAGCGCCAACTCCGGTCGACGCAATAACTTGCATGGGACCGGAGTAAGCGCTAAAGCGCCAACTCCGGTCGAC

>CP026105|2|2|1521879-1521956|CRISPRCasFinder
CGCTAAAGCGCCAACTCCGGTCGAC	GCAATAACTTGCATGGGACCGGAGTAAG
CGCTAAAGCGCCAACTCCGGTCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP026105.1\|AUT68079.1\|1526731_1527925_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368779
CP026105.1\|AUT68068.1\|1516879_1517281_+\|DUF1992-domain-containing-protein	unknown	unknown	gnl\|CDD\|182303
CP026105.1\|AUT68067.1\|1516484_1516787_-\|hypothetical-protein	unknown	unknown	unknown
CP026105.1\|AUT68080.1\|1528153_1528507_-\|hydroxyisourate-hydrolase	unknown	unknown	gnl\|CDD\|225226
CP026105.1\|AUT68076.1\|1524529_1525543_+\|allantoicase	unknown	unknown	gnl\|CDD\|237319
CP026105.1\|AUT68074.1\|1522980_1523934_+\|allantoinase-PuuE	unknown	unknown	gnl\|CDD\|211797
CP026105.1\|AUT68078.1\|1526243_1526612_+\|glyoxalase	unknown	unknown	gnl\|CDD\|319924
CP026105.1\|AUT68066.1\|1515634_1516303_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|183072
CP026105.1\|AUT68073.1\|1521968_1522826_+\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|226611
CP026105.1\|AUT68077.1\|1525539_1526052_+\|ureidoglycolate-lyase	unknown	unknown	gnl\|CDD\|179606
CP026105.1\|AUT68070.1\|1517974_1518901_+\|muramoyltetrapeptide-carboxypeptidase	unknown	unknown	gnl\|CDD\|183059
CP026105.1\|AUT68065.1\|1514708_1515527_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP026105.1\|AUT68081.1\|1528866_1529133_+\|hypothetical-protein	unknown	unknown	unknown
CP026105.1\|AUT70164.1\|1513677_1514523_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143600
CP026105.1\|AUT68064.1\|1512178_1513519_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
CP026105.1\|AUT68075.1\|1523930_1524452_+\|OHCU-decarboxylase	unknown	unknown	gnl\|CDD\|132208
CP026105.1\|AUT68071.1\|1519230_1519947_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP026105.1\|AUT68069.1\|1517277_1517961_+\|tRNA-adenosine(34)-deaminase-TadA	unknown	unknown	gnl\|CDD\|223663
CP026105.1\|AUT68072.1\|1520333_1521830_+\|nitrate-reductase	unknown	unknown	gnl\|CDD\|271404
CP026105.1\|AUT68082.1\|1529129_1530539_+\|8-oxoguanine-deaminase	unknown	unknown	gnl\|CDD\|236184

Protein	Function_ID	Function_description	E-value
CP026105.1\|AUT68079.1\|1526731_1527925_-\|hypothetical-protein	gnl\|CDD\|368779	pfam06181, Urate_ox_N, Urate oxidase N-terminal. Cytochrome c urate oxidase (Uox) PuuD is involved in purine degradation. In contrast with soluble Uox it is a membrane protein with an 8-helix transmembrane N-terminal domain and a C-terminal cytochrome c.	0
CP026105.1\|AUT68068.1\|1516879_1517281_+\|DUF1992-domain-containing-protein	gnl\|CDD\|182303	PRK10203, PRK10203, hypothetical protein; Provisional.	3.02882e-23
CP026105.1\|AUT68080.1\|1528153_1528507_-\|hydroxyisourate-hydrolase	gnl\|CDD\|225226	COG2351, COG2351, Transthyretin-like protein [General function prediction only].	2.23126e-63
CP026105.1\|AUT68076.1\|1524529_1525543_+\|allantoicase	gnl\|CDD\|237319	PRK13257, PRK13257, allantoicase; Provisional.	0
CP026105.1\|AUT68074.1\|1522980_1523934_+\|allantoinase-PuuE	gnl\|CDD\|211797	TIGR03212, uraD_N-term-dom, putative urate catabolism protein. This model represents a protein that is predominantly found just upstream of the UraD protein (OHCU decarboxylase) and in a number of instances as a N-terminal fusion with it. UraD itself catalyzes the last step in the catabolism of urate to allantoate. The function of this protein is presently unknown. It shows homology with the pfam01522 polysaccharide deacetylase domain family.	0
CP026105.1\|AUT68078.1\|1526243_1526612_+\|glyoxalase	gnl\|CDD\|319924	cd07263, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	5.81708e-13
CP026105.1\|AUT68066.1\|1515634_1516303_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|183072	PRK11280, PRK11280, hypothetical protein; Provisional.	8.04984e-12
CP026105.1\|AUT68073.1\|1521968_1522826_+\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	1.53162e-87
CP026105.1\|AUT68077.1\|1525539_1526052_+\|ureidoglycolate-lyase	gnl\|CDD\|179606	PRK03606, PRK03606, ureidoglycolate lyase.	5.57419e-107
CP026105.1\|AUT68070.1\|1517974_1518901_+\|muramoyltetrapeptide-carboxypeptidase	gnl\|CDD\|183059	PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.	0
CP026105.1\|AUT68065.1\|1514708_1515527_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.47754e-14
CP026105.1\|AUT70164.1\|1513677_1514523_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143600	cd07576, R-amidase_like, Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric complexes, the basic building block of which is a homodimer. Native R-amidase however appears to be a monomer.	8.44623e-107
CP026105.1\|AUT68064.1\|1512178_1513519_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	8.77133e-40
CP026105.1\|AUT68075.1\|1523930_1524452_+\|OHCU-decarboxylase	gnl\|CDD\|132208	TIGR03164, UHCUDC, OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.	2.3974e-78
CP026105.1\|AUT68071.1\|1519230_1519947_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.44948e-47
CP026105.1\|AUT68069.1\|1517277_1517961_+\|tRNA-adenosine(34)-deaminase-TadA	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	7.79402e-63
CP026105.1\|AUT68072.1\|1520333_1521830_+\|nitrate-reductase	gnl\|CDD\|271404	cd11555, SLC-NCS1sbd_u1, uncharacterized nucleobase-cation-symport-1 (NCS1) transporter subfamily; solute-binding domain. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	0
CP026105.1\|AUT68082.1\|1529129_1530539_+\|8-oxoguanine-deaminase	gnl\|CDD\|236184	PRK08203, PRK08203, hydroxydechloroatrazine ethylaminohydrolase; Reviewed.	0

>CP026105.1|AUT68072.1|1520333_1521830_+|nitrate-reductase
MAQFSAAPDSSAIPDYESSGQGAHAMPAGYSERLYNEDLAPLKHQTWGAYNIFAFWMSDVHSVGGYVFAGSLFALGLTSWQVLIALLVGITFVNVLCNMIAKPSQQNGVPYPVACRATFGVLGANVPAVIRGLIAVAWYGIQTYLASSALVIVVLKFFPQLLPYADVHHHGFMGLSTIGWAGFMLLWVLQALVFWNGMETIKKFIDFAGPAVYVVMFILAGYMIWRAGWKNIGINLGGVKYHGMEVIPVMITAISLVVSYFSGPMLNFGDFSRYGKSFRSVKRGNFWGLPVNFLAFSLVTVVTTAATLPVFGELITDPVETVGRIDYPTAVILGALTFTIATIGINIVANFVSPAFDFSNVAPKLISWRAGGMLAAVASIFITPWNLFNNPAVIHYTLDVLGSFIGPLYGILIIDFFLVKRQKVVLDDLYTVSEKGLYWYHNGVNYRAVGALLPAAVIAVICVMVPSLDGLANFSWFIGAGLGAVFYSVLARNLPRGA
>CP026105.1|AUT68071.1|1519230_1519947_+|GntR-family-transcriptional-regulator
MSDTHNVTASSTKPEAIAERIRAAILEHRLAPGAKLTEAQLCEVFGVKRGPIRQALALLSTDHLVDLEPNRGAFVASPSLQEVHEVFEMRRIIELAVVDKICASQGSRRLKNIGGMIARERKAFESRDFPAWIRLSGEFHTELASLTGNTVLCDCLNGLVARSTLISALYESLGRSPCSFEDHEAILAALDSGDAKTAGALMSRHLQSVELKMLDRPASGGTDLHEVFGMRAPRAAAG
>CP026105.1|AUT68070.1|1517974_1518901_+|muramoyltetrapeptide-carboxypeptidase
MAKHRTIELIAPSGYPHDPNAIHLALKRLRAQGHHVENVNATQRRYQRFAGTDGERAAELNRLADPSRELPDIVLAVRGGYGAVRILHGLDYRGLQRRLGDQPIAFCGHSDFTALQLALLSQANVKTFGGPMLAVDFGAESVSDFTMKHFWKALTSETFTISSTAPQPQTVDVTGTLWGGNLAVIASLVGSPYMPPVEGGILFVEDVNEQPFRIERLIYQLHLAGILERQQALVLGDFSGGKPFDYDNGYDLRAMVEQVRSVVGIPIVTGLQFGHIPDMVTLPVGAEARLVAGARGFKLTVSGHPVLE
>CP026105.1|AUT68069.1|1517277_1517961_+|tRNA-adenosine(34)-deaminase-TadA
MNPGVDPAVLPSADSVSSEDLIIPSCSGVSVANETSATIDTPAPEPAPITERDRRFMALAQAAAEEARAVGEVPVGAVLVCGDEVIAKGFNHPIGGHDPSAHAEMAALRAAAQKLENYRLPGCELYVTLEPCLMCAGAIMHARIARVVFGARDPKTGACGSVVDAFANPQLNHHTTVTGGVLEEECGAALRSFFADRRRAAREARAAAALNNASDAADPRADTNQTH
>CP026105.1|AUT68068.1|1516879_1517281_+|DUF1992-domain-containing-protein
MKLLDALVEQRIAAAAARGEFDDLPGTGAPQVLDDDALVPEEVRVANRILKNAGFVPPAVEQLRALRDLQNELDAVSDRSSRCRLQAKMLALDMALESLRGGPLVMPREYCRRIAERLYERVAEEPTADAGPA
>CP026105.1|AUT68067.1|1516484_1516787_-|hypothetical-protein
MSYGLAFQAKIWLSVFQRFRLRHAYRNFAPAIVSIHPKRAAARSSRMPGANRRRVVSFARVFVTGVALSLALSGCGVFCNIGGGSGGVGGSCAIGTGFRF
>CP026105.1|AUT68066.1|1515634_1516303_-|glycine-zipper-2TM-domain-containing-protein
MTHTRFARPLVRTTLIALCVTLPLAGCVVPGNSPYGASYGSTYTTQPAYAQPAQPVYAQPGYAQQPQYQQPYQQPYAQQPQYQQPGYDQPDGQDYQAYQQPQQGYGYGEQYGVVSSIQPLANPGAVTAGGVAGTVIGAVVGGVIGNQFGRGHGRDAATAIGVLGGAVAGNQLGQQAGASSPGGYRIAVQLNDGSVRAFDVGSPGDLHPGDRVRVAGNRLDRY
>CP026105.1|AUT68065.1|1514708_1515527_+|LuxR-family-transcriptional-regulator
MDFEWRDLAFHREIGSAIDALDGPHFWARLTRVLERHVGFDSWVALRFKRDAAPLVLAEQAMPDGKIDLMFQDYLAALYQLDPFYLAAFETRASGFYTLADVAPDNFRMTEYYQRYFKKNIVGDEVHFNVVIDRDHTMGFSLGKTSRYDEREIALLTLYSPWVLALMQQRLRFEKFVGEEEPRATGNEEADLHARFGMLTGKNGRGALTAREIEVAMLSLSGFSSRAIAEKLSISFETVRAHKKHIYAKLGVGSQSELFAMFYEPGRTVEPE
>CP026105.1|AUT70164.1|1513677_1514523_-|carbon-nitrogen-hydrolase
MQVELAQVALIDGDVAHNTRKVVETIGRADTAGGTKLIVFPETTLSGFPTRENVAEVAQTLDGPALTAVRDAARQKGVSVAVGLAERDGNQFYNTTVLVDERGDIALRYRKTHLWASDVGVFTPGDRFETCMWNGLTVGLLICYDIEFPESARAVAALDADLLIVTNGNMDPFGPVHRRAITARAMENQMFALMVNRCGSGDDNLTFPGLSALIDPFGETVLELGGEETVTKATVDFKRLEASREHYNYLHDARVPLGLVPVEQSDGHRALMVEARRRRTD
>CP026105.1|AUT68064.1|1512178_1513519_-|APC-family-permease
MQASSSHEPSHLKRTLGLPSVLLFGLAYMAPLIVYGTYGVLAKASDDTAALAYLLALIAIAFTALSYGKLARLYPVAGSAYTYTRKTFNAHLGFLIGWATLLDYFFLPMVIWLIGAAYLNAAFPHVPSWIWIVAFIVLTSGLNIVGIELAARFNIVLMVVQLAIVAMFVALCWHYASAAAGPGGIAMAEPFFKPHVPLGATMAGAAIAAYSYLGFDAVSTLTEETIDPKKNMPRAILLIALIGGAIFVIAAYTMQLAHPGVEFKDTDSAAFEVAKMIGGDIFVTVFLAGLILAQFASGISAQASVGRLLYAMGPDEILPKRFFGYIHPRFKTPAINIAIAGIVGLIALKLDVATSTSFINFGAFLAFTAVNLCVVRLYLSGNHGDRKIGVFGGLVFPLIGAVADIWLLASLEKTALVLGAVWFVLGIAYLCWITRLFRQAPPEVAI
>CP026105.1|AUT68073.1|1521968_1522826_+|aspartate/glutamate-racemase-family-protein
MRIKLINPNTTQRMTEAMGRCARDVVAPGTELVAVSPTMGPPSIEGYYDEALATPGLLAEIEAGEREGFDGYVIACFGDPGLYAARELARGPVIGIAEAAMHAASVLAPGFSVVTTLSRTCGMAWHLAERYGMKRFCRNVRATDVAVLELDQPGSSARRIILDECRRALDEDGSDAIVLGCAGMAELCREIEDALGAPVVEGVTAAVKWVEALVSLRLATAKRGDYARPLAKRYDGEFARFSPTGEQPAAAPAAQQGAGEALLRVNSSALRADPAANIAPHIHSV
>CP026105.1|AUT68074.1|1522980_1523934_+|allantoinase-PuuE
MSFDPNYPRDLIGYGRHPVQANWPGRARVAVQFVLNYEEGGENCVLHGDPGSEQFLSEIVGAASYPARHMSMESIYEYGSRAGVWRILREFEKRGLPLTVFGVGMAIERHPELARAFVELGHEIACHGYRWIHYQDMSPEREAEHMRLGMEAIERVTGQRPLGWYTGRDSPNTHRLVAEYGGFLYDSDNYGDDLPFWMDVEVTGGAKVPQLILPYTLDTNDMRFATPQGFNTADHFFTYLRDAFDVLYEEGDEAPKMLSIGMHCRLLGRPGRMRALQRFLDHIEKHERVWVTRRVDIARHWREHHPYQQQDNRGAAA
>CP026105.1|AUT68075.1|1523930_1524452_+|OHCU-decarboxylase
MKAMQYTLDQLNSISTDAFVAALSGIFEHSPWVAEVAAAQRPYANIDALHKTMSSAVETAGEAKQFALINAHPELAGKAAVRGELTAESTREQSGAGLGQCTQEEFDKLLRLNAAYREKFGFPFILAVRGYDRYGIIANFEARVNNSRADELRASLDQIYRIARFRLDDLISA
>CP026105.1|AUT68076.1|1524529_1525543_+|allantoicase
MALPILDPNAPEFTRRFVNLADPRLGAQALEASDDFFAPKDRMLNPEPAVFIPGKYDEHGKWMDGWETRRKRTTGYDWCVVKLARPGVIKGLDLDTSHFTGNFPPAASVEAARVVDGAPNQSTQWTEIVPSTTLQGNSHHYLEVGDTNAYTHLRVNIYPDGGIARLRVYGQPQVDWAGASRTDLFDLAAMENGAYLVGANNQHFGAASTLLMPGRGVNMGDGWETRRRREPGNDWAIVGLAQPGVIKKIEVDTAHFKGNYPDRCSIQAAYVTGGTDSSLITQAMFWPVLLGEQKLQMDKQHFFENEIAALGPVTHIRFNIIPDGGVSRLRLWGTLAS
>CP026105.1|AUT68077.1|1525539_1526052_+|ureidoglycolate-lyase
MKTLAIEPLTREAFAPFGDVIELEGAKQIPINLGTTIRYHDLANVDITDEGGRTLVNLFRGQPRALPFEITMMERHPLGSQAFIPLNDKPYLVVVAPAGELDESKIRAFVTSGWQGVNYAKGVWHHPLLALGEVSDFIVVDRGGDGHNLNEQNLRESQWLTEEAMNAVVV
>CP026105.1|AUT68078.1|1526243_1526612_+|glyoxalase
MQASLNRILLYVRDVERACAFYQRYFGFTATRDNDDRIVELTSPHGGVILLIHPAAKGVKAGQATVKLVFDVEDVEAFKAHCATDGLVFGATHRTDGYSFANAKDPDGNSVSISSRGFRVDR
>CP026105.1|AUT68079.1|1526731_1527925_-|hypothetical-protein
MEGFITDWLNLAIRWFHVIAAIAWIGESFYFVALDNSLKPPVDPNQRRRGVFGELWHVHGGGFYNMQKYTVAPPEMPDDLHWSKWPSYTTWLSGFGLFTVLYLFAPNTYLIDKNVLDMGPVVAIFSALGFLAAGWIVYDSLCRLLGNKDKVLGICVGIYVLIAAFLACHIFAGRAAYLIMGAMLATIMSANVFFVIIPGQRKMVAAMLKGETPNPIYGKRGKQRSVHNTYLTLPVVFAMLSNHYAMTYTHPYNWAVLVVIMLAGALIRQFFVMRHRGQVLWYLPLAGIVLMFGALFWTMPKPVVPVAEAANAPVVKTADIVPVLQQRCVACHSAHPTMMGSAPAGVLLDTPAEISTNAQRIYQQAVTLKAMPLGNVTHMTDEERQKIAAWFQGGAVN
>CP026105.1|AUT68080.1|1528153_1528507_-|hydroxyisourate-hydrolase
MGKLTTHVLDTANGRPGADIKVELFALSGDTRRALKTTTTNHDGRCNEPLLEGDALAVGEYELVFHAGDYFASIGTKVPEPRFVDRVVLRFGIADAGAHYHVPLLVSPWAYSTYRGS
>CP026105.1|AUT68081.1|1528866_1529133_+|hypothetical-protein
MRGGAAHPEDGGTRWVTGPTAFERTRRHGGVPPTSRSNDFCTCPDNRRLRRRQNDAALSGYMRPEQRNGAASCGGLICGNTGQHWRNE
>CP026105.1|AUT68082.1|1529129_1530539_+|8-oxoguanine-deaminase
MTMQTSSTGVTRTTGQRGKTMLVRHADVLVTMDGERRELRDGGLYIEDNRIVAVGPTSELPDTADEILDMTGHLVIPGLVNTHHHMYQSLTRAIPAAQDAELFGWLTSLYKVWANLTPEMIEVSTLTAMAELLLSGCTTSSDHLYIYPNGSRLDDSIAAARRIGMRFHASRGSMSVGQKDGGLPPDSVVEKEADILKDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRESAAMARHYGVSLHTHLAENVNDIAYSREKFGMTPAEYAEDLGWVGRDVWHAHCVQLDDAGIELFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALAPGMAADFVSFDLRQPLFAGALHDPVAALVFCAPSQVSTSVIGGKVVVKDGVLTTVDLGPVIERHNSLARTLYESAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026105_1	1.1\|655945\|35\|CP026105\|CRISPRCasFinder	655945-655979	35	CP026106.1	844060-844094	2	0.943
CP026105_1	1.1\|655945\|35\|CP026105\|CRISPRCasFinder	655945-655979	35	CP026107.1	2151274-2151308	2	0.943

1. spacer 1.1|655945|35|CP026105|CRISPRCasFinder matches to position: 844060-844094, mismatch: 2, identity: 0.943

cgaaaaggcaaacccacaggggcgacgcatgaagc	CRISPR spacer
cgaaaaggcaaacgcacaggggcgacgcttgaagc	Protospacer
************* ************** ******

2. spacer 1.1|655945|35|CP026105|CRISPRCasFinder matches to position: 2151274-2151308, mismatch: 2, identity: 0.943

cgaaaaggcaaacccacaggggcgacgcatgaagc	CRISPR spacer
cgaaaaggcaaacccacaggggcaacgcttgaagc	Protospacer
***********************.**** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026105_2	2.1\|1521904\|28\|CP026105\|CRISPRCasFinder	1521904-1521931	28	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	1258767-1258794	8	0.714
CP026105_2	2.1\|1521904\|28\|CP026105\|CRISPRCasFinder	1521904-1521931	28	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	1263436-1263463	8	0.714

1. spacer 2.1|1521904|28|CP026105|CRISPRCasFinder matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.714

gcaataacttgcatgggaccggagtaag	CRISPR spacer
atcgagccttgcatgggaccggactaag	Protospacer
.. . . **************** ****

2. spacer 2.1|1521904|28|CP026105|CRISPRCasFinder matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.714

gcaataacttgcatgggaccggagtaag	CRISPR spacer
atcgagccttgcatgggaccggactaag	Protospacer
.. . . **************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2126568 : 2133203

Moraxella_phage(16.67%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT68536.1\|2126568_2126844_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PH90	Moraxella_phage	9.5e-20	60.9
AUT68537.1\|2126966_2127275_+	hypothetical protein	NA	NA	NA	NA
AUT70215.1\|2127309_2127663_-	DUF1353 domain-containing protein	A0A0E3Y4V5	Fusobacterium_phage	1.3e-08	38.3
AUT68538.1\|2128167_2128443_-	hypothetical protein	NA	NA	NA	NA
AUT68539.1\|2128453_2128810_-	hypothetical protein	NA	NA	NA	NA
AUT68540.1\|2128983_2129448_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	Q9ZXE4	Bacillus_phage	1.4e-18	39.5
AUT68541.1\|2129449_2129698_-	hypothetical protein	NA	NA	NA	NA
AUT68542.1\|2129852_2130065_-	hypothetical protein	NA	NA	NA	NA
AUT68543.1\|2130106_2131066_-\|transposase	IS5/IS1182 family transposase	A0A1V0E8E1	Vibrio_phage	1.3e-55	40.8
AUT70216.1\|2131369_2131798_-	RusA family crossover junction endodeoxyribonuclease	A9YWY9	Burkholderia_phage	3.2e-30	52.5
AUT68544.1\|2131974_2132190_-	hypothetical protein	NA	NA	NA	NA
AUT68545.1\|2132186_2133203_-	helix-turn-helix domain-containing protein	Q6JIG0	Burkholderia_virus	5.7e-102	57.7

DBSCAN-SWA_2

2877750 : 2952205

Trichoplusia_ni_ascovirus(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT69140.1\|2877750_2879088_+\|transposase	IS4 family transposase	NA	NA	NA	NA
AUT69141.1\|2879912_2880527_-	hypothetical protein	NA	NA	NA	NA
AUT69142.1\|2882185_2883499_+	DUF2254 domain-containing protein	NA	NA	NA	NA
AUT69143.1\|2883517_2884195_+	carbonic anhydrase	NA	NA	NA	NA
AUT69144.1\|2884671_2885484_+\|transposase	IS5 family transposase	NA	NA	NA	NA
AUT69145.1\|2885490_2886453_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUT69146.1\|2887520_2888615_-	AI-2E family transporter	NA	NA	NA	NA
AUT69147.1\|2888747_2889332_-	hypothetical protein	NA	NA	NA	NA
AUT69148.1\|2889410_2889980_-	hypothetical protein	NA	NA	NA	NA
AUT70288.1\|2890079_2890430_-	hypothetical protein	NA	NA	NA	NA
AUT69149.1\|2891546_2892020_-	hypothetical protein	NA	NA	NA	NA
AUT69150.1\|2893315_2894602_+	hypothetical protein	NA	NA	NA	NA
AUT69151.1\|2894598_2895852_+	hypothetical protein	NA	NA	NA	NA
AUT69152.1\|2895838_2896993_+	hypothetical protein	NA	NA	NA	NA
AUT69153.1\|2897341_2897824_-	hypothetical protein	NA	NA	NA	NA
AUT69154.1\|2897930_2898356_-	hypothetical protein	NA	NA	NA	NA
AUT70289.1\|2899473_2900451_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUT69155.1\|2900487_2900802_+	hypothetical protein	A0A0N7C1Z2	Escherichia_phage	1.2e-07	52.6
AUT69156.1\|2900798_2901599_+	hypothetical protein	Q8W6R2	Burkholderia_virus	3.2e-39	41.5
AUT69157.1\|2903547_2903730_-	hypothetical protein	NA	NA	NA	NA
AUT69158.1\|2903852_2904314_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AUT69159.1\|2904523_2904793_-	hypothetical protein	NA	NA	NA	NA
AUT69160.1\|2904822_2905128_+	hypothetical protein	NA	NA	NA	NA
AUT69161.1\|2908415_2908721_-	panthothenate synthetase	NA	NA	NA	NA
AUT69162.1\|2909021_2912048_-	hypothetical protein	NA	NA	NA	NA
AUT69163.1\|2912380_2912743_-	transcriptional regulator	NA	NA	NA	NA
AUT69164.1\|2912828_2913155_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
AUT69165.1\|2913154_2913934_+	short-chain dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-11	28.2
AUT69166.1\|2914410_2915493_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AUT69167.1\|2915505_2915805_+	hypothetical protein	NA	NA	NA	NA
AUT69168.1\|2916051_2917473_-	DUF2252 domain-containing protein	NA	NA	NA	NA
AUT69169.1\|2917707_2919450_-	SulP family inorganic anion transporter	NA	NA	NA	NA
AUT69170.1\|2920030_2920792_-	DUF4239 domain-containing protein	NA	NA	NA	NA
AUT69171.1\|2920830_2921130_-	hypothetical protein	NA	NA	NA	NA
AUT69172.1\|2921313_2921523_-	hypothetical protein	NA	NA	NA	NA
AUT69173.1\|2921742_2922411_-	toluene tolerance protein	NA	NA	NA	NA
AUT69174.1\|2922577_2922868_-	hypothetical protein	NA	NA	NA	NA
AUT69175.1\|2923576_2925547_+	SMP-30/gluconolaconase/LRE-like region family protein	NA	NA	NA	NA
AUT69176.1\|2925985_2927956_+	phosphoesterase	NA	NA	NA	NA
AUT70290.1\|2928516_2928825_-	addiction module antidote protein, HigA family	M9MUN2	Rhodococcus_phage	5.7e-13	46.2
AUT69177.1\|2928837_2929125_-	excinuclease ABC subunit A	NA	NA	NA	NA
AUT69178.1\|2929166_2929739_+	DUF1376 domain-containing protein	NA	NA	NA	NA
AUT69179.1\|2929702_2930302_-	NADP oxidoreductase coenzyme	NA	NA	NA	NA
AUT70291.1\|2930404_2931139_-	KR domain-containing protein	Q06VL0	Trichoplusia_ni_ascovirus	4.2e-22	34.7
AUT69180.1\|2931269_2931845_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AUT69181.1\|2936284_2938507_+	OsmC domain/YcaO domain-containing protein	NA	NA	NA	NA
AUT69182.1\|2938798_2940478_-	ABC transporter	A0A2K9L3Z8	Tupanvirus	3.1e-60	30.9
AUT70292.1\|2940697_2943724_-	hypothetical protein	NA	NA	NA	NA
AUT69183.1\|2944160_2945618_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AUT69184.1\|2945768_2946554_-	hypothetical protein	NA	NA	NA	NA
AUT70293.1\|2947487_2947793_+	hypothetical protein	NA	NA	NA	NA
AUT69185.1\|2948647_2949085_-	hypothetical protein	NA	NA	NA	NA
AUT70294.1\|2949315_2950494_+	TIGR03118 family protein	A0A2K9L290	Tupanvirus	4.5e-34	32.7
AUT69186.1\|2951392_2952205_+\|transposase	IS5 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2955336 : 3005916

Stx2-converting_phage(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT69189.1\|2955336_2956917_-\|transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	5.5e-43	28.9
AUT69190.1\|2956948_2957269_-	IS66 family insertion sequence hypothetical protein	S5VXZ8	Leptospira_phage	1.8e-14	39.0
AUT69191.1\|2957652_2959185_-\|transposase	IS66 family transposase	A0A218MNE7	uncultured_virus	4.4e-122	46.0
AUT69192.1\|2959580_2960033_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AUT69193.1\|2962615_2963047_+	hypothetical protein	NA	NA	NA	NA
AUT69194.1\|2963037_2963298_-	hypothetical protein	NA	NA	NA	NA
AUT69195.1\|2963303_2963519_+	hypothetical protein	NA	NA	NA	NA
AUT69196.1\|2963944_2964988_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AUT69197.1\|2965260_2966280_-	hypothetical protein	NA	NA	NA	NA
AUT69198.1\|2967511_2968060_-\|transposase	transposase	NA	NA	NA	NA
AUT69199.1\|2968056_2968518_-\|transposase	transposase	NA	NA	NA	NA
AUT69200.1\|2968965_2969142_-	sensor histidine kinase	NA	NA	NA	NA
AUT69201.1\|2969876_2971199_+\|transposase	IS5/IS1182 family transposase	K4ICS3	Acidithiobacillus_phage	2.0e-59	50.6
AUT69202.1\|2972048_2972438_-	hypothetical protein	NA	NA	NA	NA
AUT69203.1\|2973505_2974900_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	4.2e-55	31.3
AUT69204.1\|2977258_2978356_+	hypothetical protein	NA	NA	NA	NA
AUT69205.1\|2978419_2978875_+	hypothetical protein	NA	NA	NA	NA
AUT69206.1\|2978932_2979739_+	hypothetical protein	NA	NA	NA	NA
AUT70295.1\|2982070_2983333_+	hypothetical protein	NA	NA	NA	NA
AUT69207.1\|2983329_2984169_+	glycosyl transferase	NA	NA	NA	NA
AUT69208.1\|2984199_2985372_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AUT69209.1\|2985383_2986406_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	9.8e-86	47.5
AUT69210.1\|2986729_2987149_-	hypothetical protein	NA	NA	NA	NA
AUT69211.1\|2987730_2988138_-	hypothetical protein	NA	NA	NA	NA
AUT69212.1\|2990289_2990538_-	hypothetical protein	NA	NA	NA	NA
AUT69213.1\|2991767_2992190_-	hypothetical protein	NA	NA	NA	NA
AUT69214.1\|2992188_2993436_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.4e-11	21.6
AUT69215.1\|2993921_2995130_-	hypothetical protein	NA	NA	NA	NA
AUT69216.1\|2997718_2998621_-	hypothetical protein	NA	NA	NA	NA
AUT69217.1\|2999081_3000263_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AUT69218.1\|3000377_3001610_+	transferase	NA	NA	NA	NA
AUT69219.1\|3002424_3003561_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUT69220.1\|3003654_3003846_-	hypothetical protein	NA	NA	NA	NA
AUT69221.1\|3003842_3004196_-	hypothetical protein	NA	NA	NA	NA
AUT70296.1\|3004741_3005916_-\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	8.6e-110	69.9

DBSCAN-SWA_4

3084449 : 3136397

Thermobifida_phage(25.0%)

integrase,transposase

attL 3090003:3090021|attR 3127924:3127942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT69284.1\|3084449_3085583_+\|transposase	transposase	A0A0R8V9X2	Thermobifida_phage	3.5e-108	55.9
AUT69285.1\|3085637_3086213_-	YqgE/AlgH family protein	NA	NA	NA	NA
AUT69286.1\|3086459_3087872_-	hypothetical protein	NA	NA	NA	NA
AUT69287.1\|3088243_3088414_-	rubredoxin	NA	NA	NA	NA
AUT69288.1\|3088676_3089537_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
AUT70303.1\|3089901_3090501_+	adenylyl-sulfate kinase	NA	NA	NA	NA
3090003:3090021	attL	NA	NA	NA	NA
AUT69289.1\|3090634_3092275_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	3.5e-170	61.5
AUT69290.1\|3092318_3092609_-	co-chaperone GroES	A0A221S4A8	uncultured_virus	7.2e-18	39.4
AUT69291.1\|3093169_3093472_+	hypothetical protein	NA	NA	NA	NA
AUT69292.1\|3093512_3093962_+	hypothetical protein	NA	NA	NA	NA
AUT69293.1\|3094691_3095510_-	phosphopantetheinyl transferase	NA	NA	NA	NA
AUT69294.1\|3097111_3098173_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.8e-40	37.9
AUT69295.1\|3098162_3098351_-	excisionase	NA	NA	NA	NA
AUT69296.1\|3098461_3098788_+	hypothetical protein	NA	NA	NA	NA
AUT70304.1\|3099477_3099717_+	hypothetical protein	NA	NA	NA	NA
AUT69297.1\|3100229_3101597_-	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
AUT69298.1\|3102209_3103025_-\|transposase	transposase	A0A1B1P8D0	Bacillus_phage	9.5e-07	31.0
AUT69299.1\|3103021_3104521_-\|transposase	IS21 family transposase	NA	NA	NA	NA
AUT69300.1\|3106095_3107475_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
AUT69301.1\|3107495_3107807_-	hypothetical protein	NA	NA	NA	NA
AUT69302.1\|3108066_3108330_-	hypothetical protein	NA	NA	NA	NA
AUT69303.1\|3108769_3108973_+	hypothetical protein	NA	NA	NA	NA
AUT69304.1\|3109567_3110539_+	hypothetical protein	NA	NA	NA	NA
AUT69305.1\|3110653_3113812_-	acetoacetate--CoA ligase	NA	NA	NA	NA
AUT69306.1\|3114251_3114557_+	hypothetical protein	NA	NA	NA	NA
AUT69307.1\|3114559_3115729_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
AUT69308.1\|3115844_3116042_-	hypothetical protein	NA	NA	NA	NA
AUT69309.1\|3117034_3117298_-	hypothetical protein	NA	NA	NA	NA
AUT69310.1\|3118152_3118377_-	hypothetical protein	NA	NA	NA	NA
AUT69311.1\|3119720_3121376_+	hypothetical protein	NA	NA	NA	NA
AUT69312.1\|3122135_3122345_-	hypothetical protein	NA	NA	NA	NA
AUT69313.1\|3122633_3124031_-	NarK/NasA family nitrate transporter	NA	NA	NA	NA
AUT70305.1\|3124086_3124836_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
AUT69314.1\|3125290_3126487_-	sugar ABC transporter permease	NA	NA	NA	NA
AUT69315.1\|3126483_3128061_-	D-xylose ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.8e-15	28.8
3127924:3127942	attR	NA	NA	NA	NA
AUT69316.1\|3128135_3129164_-	D-xylose ABC transporter substrate-binding protein	NA	NA	NA	NA
AUT69317.1\|3129376_3130702_-	xylose isomerase	NA	NA	NA	NA
AUT69318.1\|3131183_3132143_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	3.2e-30	35.7
AUT69319.1\|3132926_3134129_+	XylR family transcriptional regulator	NA	NA	NA	NA
AUT69320.1\|3134160_3135252_+	galactose mutarotase	NA	NA	NA	NA
AUT69321.1\|3135365_3136397_-\|transposase	transposase	A0A0R8V9X2	Thermobifida_phage	6.1e-27	29.7

DBSCAN-SWA_5

3302386 : 3317077

Pandoravirus(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT69436.1\|3302386_3303454_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	6.2e-75	46.5
AUT69437.1\|3303551_3304628_+	AI-2E family transporter	NA	NA	NA	NA
AUT69438.1\|3304671_3305454_+	DnaA regulatory inactivator Hda	NA	NA	NA	NA
AUT69439.1\|3305446_3306133_+	HAD-IB family hydrolase	NA	NA	NA	NA
AUT69440.1\|3306129_3307752_+	polynucleotide adenylyltransferase PcnB	A0A172Q0J1	Acinetobacter_phage	2.6e-16	30.8
AUT69441.1\|3307800_3308364_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	S4VNV0	Pandoravirus	2.5e-14	40.1
AUT69442.1\|3308360_3309056_+	deoxynucleoside kinase	A0A0C5K8U0	Enterococcus_phage	1.8e-06	28.0
AUT69443.1\|3309098_3309914_+	3-methyl-2-oxobutanoate hydroxymethyltransferase	A0A0N7HVJ8	Ostreococcus_lucimarinus_virus	7.4e-36	30.6
AUT69444.1\|3310333_3311719_-\|transposase	transposase	A0A1S5RG13	Helicobacter_phage	4.4e-12	21.1
AUT69445.1\|3311831_3313712_-	chloride transporter	S4VNU7	Pandoravirus	1.0e-51	33.6
AUT69446.1\|3313736_3314870_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	7.4e-26	38.6
AUT69447.1\|3315124_3317077_-	molecular chaperone DnaK	A0A1V0SH73	Hokovirus	2.9e-147	48.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026106

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026106_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_1

676728-676808

Orphan

Consensus_repeat	Method
CGCGGATGCCAGCGCAAAGGCCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026106_1

>merge|CP026106|1|676728-676808|CRISPRCasFinder
CGCGGATGCCAGCGCAAAGGCCAGACCAACGAAAGCGCCCGCGCCGCAAAGGCGCAAACGCGAATGCCAGCGCAAAGGCCA

>CP026106|1|1|676728-676808|CRISPRCasFinder
CGCGGATGCCAGCGCAAAGGCCA	GACCAACGAAAGCGCCCGCGCCGCAAAGGCGCAAA
CGCGAATGCCAGCGCAAAGGCCA

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT70918.1\|675586_676423_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|274527
CP026106.1\|AUT70916.1\|670337_671804_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143421
CP026106.1\|AUT70921.1\|678695_679565_-\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226164
CP026106.1\|AUT73002.1\|672609_673893_-\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236032
CP026106.1\|AUT73003.1\|685146_685602_+\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT70919.1\|676842_677676_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
CP026106.1\|AUT70915.1\|668650_669625_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|237261
CP026106.1\|AUT70912.1\|665498_666476_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	unknown	unknown	gnl\|CDD\|238958
CP026106.1\|AUT70923.1\|680882_681719_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP026106.1\|AUT73001.1\|664304_665423_+\|ATP-NAD-kinase	unknown	unknown	gnl\|CDD\|225740
CP026106.1\|AUT70925.1\|683714_684944_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
CP026106.1\|AUT70911.1\|661902_663852_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
CP026106.1\|AUT70920.1\|677672_678641_-\|phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|132472
CP026106.1\|AUT70913.1\|666515_667520_+\|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl\|CDD\|223101
CP026106.1\|AUT70924.1\|682467_683697_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237537
CP026106.1\|AUT70926.1\|685605_686319_+\|peptidase-C39	unknown	unknown	gnl\|CDD\|239103
CP026106.1\|AUT70922.1\|679851_680886_+\|DUF2817-domain-containing-protein	unknown	unknown	gnl\|CDD\|349434
CP026106.1\|AUT70917.1\|674013_675570_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP026106.1\|AUT70927.1\|686327_687839_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
CP026106.1\|AUT70914.1\|667535_668648_+\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	unknown	unknown	gnl\|CDD\|184875

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT70918.1\|675586_676423_-\|EamA-family-transporter	gnl\|CDD\|274527	TIGR03340, phn_DUF6, phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.	1.04207e-26
CP026106.1\|AUT70916.1\|670337_671804_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143421	cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.	0
CP026106.1\|AUT70921.1\|678695_679565_-\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	5.12704e-110
CP026106.1\|AUT73002.1\|672609_673893_-\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236032	PRK07495, PRK07495, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP026106.1\|AUT70919.1\|676842_677676_-\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	1.94091e-98
CP026106.1\|AUT70915.1\|668650_669625_+\|lipoyl-synthase	gnl\|CDD\|237261	PRK12928, PRK12928, lipoyl synthase; Provisional.	0
CP026106.1\|AUT70912.1\|665498_666476_+\|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha	gnl\|CDD\|238958	cd02000, TPP_E1_PDC_ADC_BCADC, Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).	2.52049e-140
CP026106.1\|AUT70923.1\|680882_681719_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.02806e-10
CP026106.1\|AUT73001.1\|664304_665423_+\|ATP-NAD-kinase	gnl\|CDD\|225740	COG3199, COG3199, Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only].	7.38732e-25
CP026106.1\|AUT70925.1\|683714_684944_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	1.79436e-08
CP026106.1\|AUT70911.1\|661902_663852_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	0
CP026106.1\|AUT70920.1\|677672_678641_-\|phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|132472	TIGR03431, PhnD, phosphonate ABC transporter, periplasmic phosphonate binding protein. This model is a subset of the broader subfamily of phosphate/phosphonate binding protein ABC transporter components, TIGR01098. In this model all members of the seed have support from genomic context for association with pathways for the metabolims of phosphonates, particularly the C-P lyase system, GenProp0232. This model includes the characterized phnD gene from E. coli. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.	1.55066e-126
CP026106.1\|AUT70913.1\|666515_667520_+\|alpha-ketoacid-dehydrogenase-subunit-beta	gnl\|CDD\|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	0
CP026106.1\|AUT70924.1\|682467_683697_+\|hypothetical-protein	gnl\|CDD\|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	1.3351e-07
CP026106.1\|AUT70926.1\|685605_686319_+\|peptidase-C39	gnl\|CDD\|239103	cd02423, Peptidase_C39G, A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are lacking the nucleotide-binding transporter signature.	5.93736e-49
CP026106.1\|AUT70922.1\|679851_680886_+\|DUF2817-domain-containing-protein	gnl\|CDD\|349434	cd03862, M14-like, Peptidase M14-like domain; uncharacterized subfamily. A functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The A forms have slightly different specificities, with Carboxypeptidase A1 (CPA1) preferring aliphatic and small aromatic residues, and CPA2 preferring the bulky aromatic side chains. Enzymes belonging to the N/E subfamily enzymes are not produced as inactive precursors and instead rely on their substrate specificity and subcellular compartmentalization to prevent inappropriate cleavages. They contain an extra C-terminal transthyretin-like domain, thought to be involved in folding or formation of oligomers. MCPs can also be classified based on their involvement in specific physiological processes; the pancreatic MCPs participate only in alimentary digestion and include carboxypeptidase A and B (A/B subfamily), while others, namely regulatory MCPs or the N/E subfamily, are involved in more selective reactions, mainly in non-digestive tissues and fluids, acting on blood coagulation/fibrinolysis, inflammation and local anaphylaxis, pro-hormone and neuropeptide processing, cellular response and others. Another MCP subfamily, is that of succinylglutamate desuccinylase /aspartoacylase, which hydrolyzes N-acetyl-L-aspartate (NAA), and deficiency in which is the established cause of Canavan disease. Another subfamily (referred to as subfamily C) includes an exceptional type of activity in the MCP family, that of dipeptidyl-peptidase activity of gamma-glutamyl-(L)-meso-diaminopimelate peptidase I which is involved in bacterial cell wall metabolism.	1.2705e-119
CP026106.1\|AUT70917.1\|674013_675570_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	9.34175e-141
CP026106.1\|AUT70927.1\|686327_687839_+\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	4.5084e-06
CP026106.1\|AUT70914.1\|667535_668648_+\|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit	gnl\|CDD\|184875	PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional.	0

>CP026106.1|AUT70918.1|675586_676423_-|EamA-family-transporter
MESLIVLLVLVSAMLHASWNAFLRLAEDRIWLLGMMSIPYLAVSAIGVIILPLPAPAAWPYIAASVVLEFGYCLALVRAYRSGDFGQIYPIARGLSPLLVFAGALVFAHETLKPLAATGVALVSLGIVSLAFRRNMRFSGESVPYALLTGLFISAYSVVDGIGARVAGNGLSYIMWVYLLWNVPQFLLVWHWRGGAEGLFTSRATMMKGMLSGVIALVAYCLIIEAYRYLPIAMVSALRELSSIFAVLIGFSFMHEKLTARRVFACTLVTLGAVLIRF
>CP026106.1|AUT70917.1|674013_675570_+|PLP-dependent-aminotransferase-family-protein
MRASVLSDWLAQRLDRGNGLPIYRQLHRLLQQAILTRELPAGSKVPSSRLLANELGIARNTVTQVYEQLALEGYVTSATGRGTFVADTSPDEIVGSPDGQTAPVSAPVQQLQQALLPPHSKSLLHAQQPAARALSQRGARLIAGAGVSKRQWGAFMPGVPDVTRFPARVWSRLHNKYWRRLRPDLLTYAPGGGLSLLRHALADYLRTSRSVRCTPEQIIITTGIHQSVDLAVRLLSDPGDVIWTEDPCYWGVRSVMHVSGLKSRPIPVDEEGINPSPDDLAHPPKLILVTPSHQYPLGMVMSLARRRMLLEYARQNQCWIIEDDYDSEYRYGSRPLASLQGLDTAGQVIYVGSFGKTLFPGLRIGYLVVPEALAESFATASAELYREGQLLQQAMLAEFIAEGHFTSHIRKMRTLYGQRRSTLLDAAARRYGDALPAVGGDAGLHLVMQLPEGTDDRAVAAAALERNIVVRPLSGYYAQPSSSQSGLLIGYACVPDEEIAPAFDTLADAIDATLPLFA
>CP026106.1|AUT73002.1|672609_673893_-|4-aminobutyrate--2-oxoglutarate-transaminase
MKNAELKSRKDAATPRGVGVMCDFYAARAENAELWDVEGRRYIDFAAGIAVCNTGHRHPKIVEAVRAQLDNFTHTAYQIVPYASYVELAEKINQRAPGDYPKKTAFFTTGAEAVENAIKIARAATGRPGVIAFTGGFHGRTMMGMALTGKVAPYKLNFGPFPGDVFHAPFPNPLHGVTTADSLKAIEFLFKADIDPKRVAAIIFEPVQGEGGFYPAPAEFVRALRKLCNEHGILLIADEVQTGFARTGELFAMHHYDVVPDLMTMAKSLAGGMPLSGVVGRADVMDAAAPGGLGGTYAGNPLAVASALAVLDIIDEEKLCERAVLLGDRLKARLTALQAEVPQIADVRGPGGMVAVEFCKPGTSDADADFTKRVQTRALERGLLLLVCGVYSNVVRFLFPLTVQDAVFDEALSILEEVLKETVGVTV
>CP026106.1|AUT70916.1|670337_671804_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MTDLRSKLKDPSLLQSKAYLNGEWQDADNKETFEVLNPATGELISQVPRMGAQETRRAIEAANKAWPAWKAKTGKQRAEILRKWNDLMLTNADDLALILTTEQGKPLAEAKGEISYAASFLEWFGEEAKRVYGDTIPTVANDKRIVVTKEPVGVCAAITPWNFPAAMITRKVGPALAAGCPIVVKPAEATPLSALALAVLAERAGVPAGIFSIVTGDPKPIGGEMTSNATVRKLSFTGSTAVGRLLMAQCAPTVKKVSLELGGNAPFIVFDDADLDAAVEGAIVSKYRNSGQTCVCTNRFYVHDSVYDAFAEKLAAAVTKLKVGFGTEQGVQQGPLINEAAVLKVESHIEDALGKGARVVTGGKRHALGHGFFEPTVLADVTPDMKVARDETFGPLAPLFRFSSDAEVVEMANSTEFGLASYFYSRDIGRIWRVAEALEFGMVGINTGAISNEVAPFGGVKQSGLGREGSHYGIDEYVVIKYMCMGGV
>CP026106.1|AUT70915.1|668650_669625_+|lipoyl-synthase
MEAAPQTSTHDSVTALGQHGLRSRDKLARIPVKVVPPEPGSALPKPAWLRARPMMSETVAGMASILREHRLHSVCEEAMCPNIGECFAQRTATFMIMGGICTRRCAFCDVAHGRPLPLDDEEPARLADAVAALGLRYVVITSVDRDDLRDGGAAHFARCVALLRERVPGIRVEVLTPDFRGRVERALDALSAAWPDVFNHNIETVPSLYRAARAGADYHGSLTLLRRVKEANASVVTKSGLMVGLGESDDELLETMRDIRAHDVDVLTIGQYLAPSRFHMAVKRYVAPETFSVYREEGLKLGFREVVAGPLVRSSYHAGDTVLT
>CP026106.1|AUT70914.1|667535_668648_+|acetoin-dehydrogenase-dihydrolipoyllysine-residue-acetyltransferase-subunit
MSIHMITMPKWGLSMQQGQVNGWLKSIGDTVGKGDEVLDVESDKIASGVECAFNGTLRRQVAQEGDTLPVGALLGVVADEQEADADIDAAVEAFQRDFVPLAADSADAGPQPEKAQIGGRTIRYLKIGDGGTPAVLIHGFGGDLNNWLFNHADLAEHRTVYALDLPGHGESTKAVESGSADELADSVIAFLDDRGIERAHFVGHSMGSLVAMTVAAKAPQRVASLSLIAGAGLGDEINREYIDGFVSGNSRNTLKPHLTKLFADGSLVTRQLVEDIVKYKRLEGVGESLQKIAASAFKDGAQQRSYRDRIDKLAPRTLVIWGELDQIIPASHAQGLPGDIRVHVLPGKGHMVQMESASEVNRLLNDFFGA
>CP026106.1|AUT70913.1|666515_667520_+|alpha-ketoacid-dehydrogenase-subunit-beta
MARKITYSQAINEALSQEMARDESVIVMGEDNAGGAGSPGEQDAWGGVLGVTKGLFHKYPGRVLDTPISEGGFIGAAVGAAAAGMRPVAELMFIDFMGVCFDQIFNQAAKFRYMFGGNAVTPVVIRTMQGAGLRAAAQHSQMLTSLFTHVPGLKVVCPSTPYDAKGLMIQAIRDNDPVIFCEHKLLYTREGDVPEELYAIPFGEANVVREGDDVTIVTYGRMVHYATDAADRLAKEGIKAEVIDLRTTSPLDEETILESLERTGRLVVVDEANPRCSIATDIAALAAQKAFHSLKAPVGIVTAPHTPTPFSGVLEDLYIPSADKIAAAVKATRH
>CP026106.1|AUT70912.1|665498_666476_+|thiamine-pyrophosphate-dependent-dehydrogenase-E1-component-subunit-alpha
MSNQLSREKLLEAYRLMRTIREFEERLHVEFATGEIPGFVHLYAGEEASAVGTILHLNDRDYVATTHRGHGHCIAKGVDVHGMMAEIYGRQTGVCKGKGGSMHIADLSKGMLGANGIVGAGGPLVCGAALAAKLKKTGGVGVCFFGDGASNQGTIFESMNLASVWRLPAIFVAENNGYAEATSSTWSVASDNIADRASGFGMPGVIVDGFDFFAVHEALGEAIERARGGGGPTLVEVKLSRYFGHFEGDAQTYRAPGEVQKLRDEKDCLKRFAERVVRAEMLSSDDLSKIDADVKVLIDDSVQKAKAAPLPTEADLLTDVYVSYP
>CP026106.1|AUT73001.1|664304_665423_+|ATP-NAD-kinase
MASSITVGVIANPASGRDIRRLTTHASVFPTAEKANMVVRLIAGLGALGVDRVLTLRDRTGVAALLLRAIDIHAATGTAERWPEVEFVDLPITDSVTDTHTGTAHMVREGVELIAVLGGDGTHRAVAAHCGGVPLLTLSTGTNNAFPDMREATVAGMAGALVASGVVPPDVALTRNKRLVVRCVAGPNRGREEIALVDVCVSRQRFVGARAVSEPSDIESLFLTFAAPDGIGLSSIGGAWAPVERTAPHGLHLTFALRDEHGFANGDGVPDGVPIFAPIAPGRIDQVTMRTCERFELGDWLPIDARHGTLAFDGEREIEIERDDRYEISLDWSGPLTVDVSRTLRFSASRQLMREMAGASMRTLMHTQAHVK
>CP026106.1|AUT70911.1|661902_663852_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MPYVSQTQHVDRVRGAIEGRLPAPANSSRLVSSWQRSYEQYQLDPSSVIGPRVLTTSELREVQGKEEAFLRASGQCLTRLHDMIRVADYCVMLTDAHGVTIDYRIDRDRRGDFKHAGLYIGSCWSEREEGTCGVANVLTDLAAITVHKTDHFRAAFTTLTCSASPIFSLTGELIGVLDASAVQSPDNRDSQRLVFQLVRQSAALIEDGYFLNQTTQHWVIFGHQSRNFVEAQPEVLIAFDECGNIAASNRKAQECIAGLSGPRHVDEIFDTSAVHLHDVARTDTIVPLRLRATGAVLYARIRAPLKRTSRVAPVVSSASAVNASSDAHADTSLDAISRFLHSRDSRIARNAEVALRIAGKHLPILILGETGVGKEVFAQALHASGARRAKPFVAVNCGAIPDSLIESELFGYAPGAFTGARSRGARGKIAQANGGTLFLDEIGDMPLNLQTRLLRVLAEGEVLPLGSDAPVRVDIDVICATHRDLARMVDEGTFREDLFYRLSGATLHMPPLRERADVLDVVRAVFDEEAQSAGHVLTLDARLAERLAHFSWPGNIRQLRNVLRYACAVCDATRVELRHVSPDVAALLAPDEAAPRPALAGLDDERARIVDALTRHQWRPNAAAEALGMSRATLYRRIAKLGIVGPHRS
>CP026106.1|AUT70919.1|676842_677676_-|phosphonate-ABC-transporter,-permease-protein-PhnE
MSAADLSADRSTPPATPSREVLAAAAGKRSWISLLGWIAVIGMLGLSWQAADMRPLDLLTDSGNMGQFAKDFFPPDFTEWRTYLQEMGVTLAVAVWGTALSIVCAIPFGLMSAHNMAPAWVVQPVRRLMDACRAINEMVFAMLFIVAVGLGPFAGVLALWVHTTGVLAKLFAEAVEAIDPRPAEGVRATGATSLDEIVYGVLPQVLPLWISYALYRFESNVRSAMVVGMVGAGGIGVVLYESIRSFNYSQTAAVMLMVIVVVTVIDVVSARLRERVI
>CP026106.1|AUT70920.1|677672_678641_-|phosphonate-ABC-transporter-substrate-binding-protein
MKFLRSLLAGVAAVSAFASFAAHAEDLNLGIISTDSSAVLKQRWQPLIDDMNKQTGLNIKAFFATDYAGIIEGMRFNKVQVAYLGNASAIEAVDRSNGEVFGKTTYANGDAGYYSVLITNVNSRFKTLDDVFKNTKDVTVGFGDPNSTSGTLVPGYYLFAQHNAPVRTSFKTVLPSSHEANLLAVVNNKIDIATNNTEMLETLKKQHPDRFAQVRVLWQSPLIPSDPLVWRKDLPDATKEKLRQFFYNYAKTDPREKAVMANIFSYGGFAPSTDAQLQPIRQIKLFEQKQKIEADASLSDSDRKTQTAAIDAKLSALNAQKQ
>CP026106.1|AUT70921.1|678695_679565_-|phosphonate-ABC-transporter-ATP-binding-protein
MEAIRIERLSKTFGNGRKALDEIDLRVEQGEMVALIGASGSGKSTLLRHIAGFTVSDAQPSQIAILGRPIQQNGRIVREVRSIRRDIGFVFQQFNLVNRLTVEANVLIGALARLPLWRRLTGCFPRSERALSMSALNEVGIGEHARERASTLSGGQQQRAALARALVQQARIILADEPIASLDPESSRRVMEMLSTLNIEHGLTVLVSLHQVDIAMQYCQRTIAMRRGKVVYDGPSAALTPTLLQKLYGDDARELLDDSQQPDSADSADSAGSAAPRARVLPLNAARSA
>CP026106.1|AUT70922.1|679851_680886_+|DUF2817-domain-containing-protein
MQALSFLPDTFTEYEELQAILEVGSGSFEIHSVCETQVRGRTFAVQTASIGSRDPRAPAIGFFGGIHGLERIGTQLVLDYMRALLGRLEWDELLVRQLQSIRLIFVPIVNPGGMWSATRANPNGVDLMRNAPQDAEERVPLLAGGQRVGSWLPWYRGRRGAPMEAEAEALLRVVADELAARPLSFALDCHSGYGWSDSIWFPYAKTRRPMPHLPEMYALKTMFERAHPHHGYMFEPQSHQYLLHGDLWDCAYDRAPPPNIFLPMTLELGSWLWIKKNPRQIFSRQGMFNPLKAHRTARVLRRHANLLDFLTRAAYASQRWLPQGSRREELLESATELWYEPGKK
>CP026106.1|AUT70923.1|680882_681719_+|alpha/beta-hydrolase
MSTWILLRGLTREARHWGALPDMLRGALDGTPQGASVTHAAPTRVLTIDLPGNGEYANLRAPLDVAGMVDFVRAAARASGAAGPYCVLAMSLGGMVATCWAQRHPAEIARLVLINTSMRPFSRFDERLRTQAWPGLAHIASHWRDARAAEEAIHRLTCNHRDAVDADLKDWIAIRESAPVSRANALRQLLAAARFSAGRQRPACATLVLSSREDGLVDPACSAALAAAWSADHWRHAWAGHDLPHDDPVWTVERIGAWLVQPTVDPDLENEQSDLTDE
>CP026106.1|AUT70924.1|682467_683697_+|hypothetical-protein
MRKTLLASAAVIALGCSGYAMANPCSDSDSSCNQKSYSGSNTSTNSATSAQTSTTGNNANEITTGARVAQDSFNSTKIVAVSRLSGSVSGVSVYGIGNHAYNDGNANGGRGGSGAKGIGGKGGSALAIGGDGGYGGNGGKAIAGDGGNSRASAGDGGNAKAYAGDGGNSKAYGGKGSGSGGDAWAKGGSAYAGSAAAGGDGHGSGKGAGLALGAGAGLAGSGDVHSKANGGGGSASSASGAATGTGTGTATASGSGTGTGTGGAGTSGAATATAGTGTATGGAGTGSGGAATSAAGAGGAATATAGAGGTAGSTAGNGGSATGGAGGAGGAGAAAAATAAAGGAGSGGSGGAGGAGGAIGVGTGDFSMANTMTSVAQSAAGILVANQNSGMASLVQQAVTVQANLSVGR
>CP026106.1|AUT70925.1|683714_684944_+|hypothetical-protein
MRKTLLASAAIVALGFSGYAMANPCANGDYSCNQKSGSGDNSLSNTASSTQGSTTGNNVNEVTGHSKVSQDSWNNTKTVAVSKLDGTVSHVRVTGIGNVATNYGNVNGGKGGDGAKGIGGKGGSAGAVGGYGGDGGNGGRAIAGDGGWSKASGGDGGYAKASGGDGGWSKASGGKGYGSGGDAGAKGGSAGAGTLAYGGYGSGKGAALGAGAGLGLGAAGSGDLSSRAGGGGGTATSNSGAASGSGSGSGSGTATASGSGTGGAATAGAATATGGAATASGGAGTGTGGAATSTAGAGGAATASAGDGGAATSTAGAGGSATGGAGAAGAAGGAATASAGAGAAGSGGAGGAGGAGGTVTMTTGSFDMSNNMASAAQSAAGVMVLNQNSGMASLVQQAVTVQANLAVGR
>CP026106.1|AUT73003.1|685146_685602_+|hypothetical-protein
MQAFKRIAKVVLPVVIGLPCFAAYVSAGELRSPVQADTSIAPVVTAAPGVSALKAPTAAASPAPAPAADATFGVAMSAEQLDAHRGGEAVFNDMNLRGTVANNTARNVDTGSNMITGGSFSNASGLPTVIQNTGANVLIQNATIVNVRFGE
>CP026106.1|AUT70926.1|685605_686319_+|peptidase-C39
MKLHGALQGAFHGAVWLLACALTAATPARADPITIYEPSGAGYAMHVTSLKEARFKRTIKQQFDFSCGSAAVATLLTFQYNYPVSEQTAFQEMFENGDQAKIRTEGFSLLDIKRFLERRGFIADGYELPLQKLVETNTPAIVLISESGYHHFVVVKGLKNDRVLIGDPATGTRPLPVKSFETKWEDQVLFVIHNKPGVGIFNDPVDWRVAPPAPLYTGVNRDGLFFTVMPKHGASDF
>CP026106.1|AUT70927.1|686327_687839_+|hypothetical-protein
MRTETRKLAGIATMVCGSMVTFGAHAFEQGAPAAAPVVAPDVAGAAVEPLVLRDAASAADATDAITQAVVDALSTQKPRAFSDDGDADGMRHVPVSYAAPIAVATPRRDAADEADSAAKPDANDEASRVTNEAVINEALYAVDASSTPSSSSSPQENDVLAQRDAVEHQDAADVTAAATPIAPIAPALAQEAEAPAKPLPVSYAAPIAVAARKGESTEKTEKAEAPRAQQVEERAQAQLMRNEQLTLDATPTPPPVSPAHEAPVANERVIVKPPVSYARPVAVPVSQTAKSVQNDSTASTNTSVQTTAGQPQIKERAAPPAQAQVKAPLSYAAPIAVPQASRNDTPPERGHEVKARADSEDPNWSSKTTVAISEEKLDTMRGGFDVANGLKVSFGVSRMAVVNGNLVTQTSFNIPDLSNMTTQQAQSLAAANIGSLLQNGGGNIAQQGSVQGLSGAVIQNTLSNQNIQALTTINASVNSLGLFKSMNLGATLNNALMNSVRPR

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Crispr_ID: CP026106_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_2

844737-844819

Orphan

Consensus_repeat	Method
CGCGGATGCCAGCGAAAAGCCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026106_2

>merge|CP026106|2|844737-844819|CRISPRCasFinder
CGCGGATGCCAGCGAAAAGCCAAACGCACAGGTGCGACACATGAAGCACGGAGGCAAAGCGCGGATGCCAGCGAAAAGGCAAA

>CP026106|2|2|844737-844819|CRISPRCasFinder
CGCGGATGCCAGCGAAAAGCCAAA	CGCACAGGTGCGACACATGAAGCACGGAGGCAAAG
CGCGGATGCCAGCGAAAAGGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT71037.1\|836008_836914_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
CP026106.1\|AUT71052.1\|853569_854598_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380628
CP026106.1\|AUT71043.1\|842321_842636_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71044.1\|842773_843112_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71040.1\|839613_840906_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273584
CP026106.1\|AUT71055.1\|858595_859336_+\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
CP026106.1\|AUT71050.1\|851623_852424_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP026106.1\|AUT71047.1\|845651_846929_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026106.1\|AUT71048.1\|847298_850376_+\|glycosyl-transferase-family-51	unknown	unknown	gnl\|CDD\|223815
CP026106.1\|AUT71051.1\|852446_853436_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
CP026106.1\|AUT71039.1\|839344_839617_+\|ferredoxin	unknown	unknown	gnl\|CDD\|379229
CP026106.1\|AUT71046.1\|844851_845535_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380064
CP026106.1\|AUT71042.1\|841943_842279_+\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71053.1\|855039_855942_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
CP026106.1\|AUT73017.1\|837262_838228_+\|hydroxyproline-2-epimerase	unknown	unknown	gnl\|CDD\|172473
CP026106.1\|AUT71041.1\|841061_841838_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP026106.1\|AUT71045.1\|843501_843948_+\|type-II-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|237270
CP026106.1\|AUT71054.1\|856187_858578_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|340393
CP026106.1\|AUT71038.1\|838224_839352_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026106.1\|AUT71049.1\|850369_851593_-\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT71037.1\|836008_836914_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	3.34138e-103
CP026106.1\|AUT71052.1\|853569_854598_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380628	cd19973, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate-binding protein. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	1.38939e-154
CP026106.1\|AUT71040.1\|839613_840906_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|273584	TIGR01372, sarcosine_oxidase_alpha_subunit, sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms [Energy metabolism, Amino acids and amines].	1.40285e-26
CP026106.1\|AUT71055.1\|858595_859336_+\|chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.39805e-11
CP026106.1\|AUT71050.1\|851623_852424_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	5.86288e-96
CP026106.1\|AUT71047.1\|845651_846929_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	1.1474e-63
CP026106.1\|AUT71048.1\|847298_850376_+\|glycosyl-transferase-family-51	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.14126e-36
CP026106.1\|AUT71051.1\|852446_853436_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.42206e-80
CP026106.1\|AUT71039.1\|839344_839617_+\|ferredoxin	gnl\|CDD\|379229	pfam13510, Fer2_4, 2Fe-2S iron-sulfur cluster binding domain. The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins.	1.14545e-17
CP026106.1\|AUT71046.1\|844851_845535_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380064	pfam17938, TetR_C_29, Tetracyclin repressor-like, C-terminal domain. This domain is found in the C-terminal region of putative TetR-family regulatory proteins.	1.12291e-57
CP026106.1\|AUT71053.1\|855039_855942_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	6.14478e-25
CP026106.1\|AUT73017.1\|837262_838228_+\|hydroxyproline-2-epimerase	gnl\|CDD\|172473	PRK13970, PRK13970, 4-hydroxyproline epimerase.	8.88874e-148
CP026106.1\|AUT71041.1\|841061_841838_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.83919e-26
CP026106.1\|AUT71045.1\|843501_843948_+\|type-II-3-dehydroquinate-dehydratase	gnl\|CDD\|237270	PRK13015, PRK13015, 3-dehydroquinate dehydratase; Reviewed.	2.15334e-92
CP026106.1\|AUT71054.1\|856187_858578_+\|HAMP-domain-containing-protein	gnl\|CDD\|340393	cd16916, HATPase_CheA-like, Histidine kinase-like ATPase domain of the chemotaxis protein histidine kinase CheA, and some hybrid sensor histidine kinases. This family includes the cytoplasmic histidine kinase (HK) CheA, a transmembrane receptor which, together with cytoplasmic adaptor protein (CheW), forms the lattice at the core of the chemosensory array that controls the cellular chemotaxis of motile bacteria and archaea. CheA forms a two-component signal transduction system (TCS) with the response regulator CheY. Proteins having this CheA-like HATPase domain generally also have a histidine-phosphotransfer domain, a histidine kinase homodimeric domain, and a regulatory domain; some are hybrid sensor histidine kinases as they contain a REC signal receiver domain.	1.4093e-41
CP026106.1\|AUT71038.1\|838224_839352_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	3.78308e-45
CP026106.1\|AUT71049.1\|850369_851593_-\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	2.39927e-40

>CP026106.1|AUT71045.1|843501_843948_+|type-II-3-dehydroquinate-dehydratase
MSFASVLVLNGPNLNLLGTREPTIYGAETLDDVARRCREAGQRLGLAIDFRQSNAEHQLIEWLHEVRTTQQGIVFNPAAYTHTSVAIADALSAIGKPVIEVHISNVHKREAFRHHSYVSAVADGVICGCGTQGYVLALERMAEILKLR
>CP026106.1|AUT71044.1|842773_843112_-|hypothetical-protein
MKKLAVTLSIPMLLAACAQYQASHNPDAGDPMKDNMTNRPVNDVIQCMTQAAAKHDTPVKATPIPQGQMLDFGESNIVKVRADNGGTTFRYYAGKRNTSNLWIESASKECAP
>CP026106.1|AUT71043.1|842321_842636_-|hypothetical-protein
MDYYKDRNDPTTRIATDTPAASAQAAAAKAAPPKKTTILRRLLSPHELATMLLLLHAPMAAFAKPEIPTLQEAGLVESIATDAGESHIRLTPEGNAILRGLGVK
>CP026106.1|AUT71042.1|841943_842279_+|hypothetical-protein
MPARRAKLRYYVYVVALDDTVWNEARFRRANPDYRFERPCVYVGMTGLDPDLRFDRHKAGIQSNRYVRDYGLRLMPELYEVFNPLPYDGARDMEVELAIGLREAGYGVWQA
>CP026106.1|AUT71041.1|841061_841838_+|AraC-family-transcriptional-regulator
MNTFASTLDALDSGEASLAGMLSHFALLEPVFDAMPDIVFFVKDAQARYALVNRTLVSRCGFKEKEKLLGKTAEDVFPSRFGRIYTAQDKAVIHVGNQMVDQLELHLYPGRQPGWCLTCKQPLRDAAGRVVGLAGISRDLRADEISHPAYSRLATVVQHLQENYVQPLNLKQLAAMADMSVAQLERYFHKVFHLTPRQVLLKTRLDAATALLVSHDKVTDVAALCGYTDHSAFTRQFKATVGVTPTEYRMLLHGTSRN
>CP026106.1|AUT71040.1|839613_840906_+|FAD-dependent-oxidoreductase
MNGQHFDVVVVGAGPAGLAAACEAAKTGARVAVLDDNPRAGGQVWRNGPAHPPSDELAALLHEIQASGNVALASAARIIAPLDKGCLLIESAEQGGACIGYDRLILATGARELLLPFDGWTLPGVTGAGGLQALIKGGMPVRGERIVIAGSGPLLLASLATARAAGARVVAVVEQASLASVMRFGVSLAATPTKLVQAAQLTRGFAGLRYMTSSVVRAAQGSGHVERAIVERAGGRMETIDCDRIACGYGLVPNTTLARALGCATRADGAIAVDEAQRTSVANIFAAGECVGVGGMELARVEGRLAGLAAVDVQHGEPVEQLRRERARWQGFAARVESAFALRDHARQLPADDTLLCRCEDVSVGEVRAHANWRDAKLHTRCGMGACQGRICGGAAQALLGWDVTQVRPPIHPAQIATLILAADEDTAAH
>CP026106.1|AUT71039.1|839344_839617_+|ferredoxin
MSESVLPRVRVTIDGEPVAIEQGATIAAALAVCGGSAYGTRGSVTGEPRAPMCGMGVCQECRVTVDGRMHVLACQTVCRDGQIVQTTRPR
>CP026106.1|AUT71038.1|838224_839352_+|FAD-binding-oxidoreductase
MTADVVIVGAGIVGAACAAELAARGLRVTVLDAQGIGGGATAAGMGHIVVMNDSPAEFALSRYSRDLWLELAPQLRTRDAFARCGTLWVASDAEELDAAREMHAGFVAQDVAAQLLDEHALYDCESSLAPGMAGGLLIGHDSIVYAPSAAQWLLTQSPGAARIDVRLQAQAVAVDAQHVTLSNGERVGGAHIVVANGLQARELVRGLPLQPKKGHLLITDRYPGFIRHQLLELGYIKSAHHATGTSVAFNAQPRPTGQLLIGSSRQFDTTDAAVEMPVLAQMLQRAARYLPALPTLNGIRAWTGFRAASPDGLPLIGPAGGTAPGVWLAVGHEGLGVTTSLGTAQLLAAQITQTAAAIAVDPFLPARFEFGACHV
>CP026106.1|AUT73017.1|837262_838228_+|hydroxyproline-2-epimerase
MSGMKTLNVIDSHTGGEPTRLVVSGGPDLGGGTLAQRLDVFRARFDDWRAGIVTEPRGSDVVVGALLCEPDRKECAAGVIFFNNVGYLGMCGHGTIGLVVSLAHMGSIGPGRHLIDTPVGIVEATLNDDLSVSVRNVPAYRHRKDVTVDVPGFGPLTGDIAWGGNWFFLVANHARTLDASNIPELTHFTSTIRDALIAAGITGANGALIDHIELFGPGSREGIDSRSFVLCPGNAYDRSPCGTGTSAKVACLAADGKLAAGTVWRQESIIGSVFEATYAEGGTLDGIATVIPTITGHSHIMAESRLCFDERDPFAWGIRTV
>CP026106.1|AUT71037.1|836008_836914_-|dihydrodipicolinate-synthase-family-protein
MAHIWQGVLPAVTTKFNADFSIDRAWTGKNIEAQIDAGVDGIIVCGSLGEASTLSLDEKLQVLDVAVEASRGRVPVLLTIAENSTLDGCRQAEAGAKHGAAGYMVLPGLRYLSDRRETLNHFRMVADASPLPLMIYNNPLAYGVDMTPEMFAEIADEKKIVAIKESCGDVRRVTDLINEVGDRYAILCGVDNLAMEAILMGAHGWVAGLVCAFPHETVAIYKLLKAGRLEEARAIYRWFAPLLALDVSAKLVQNIKLAEAIVGLGTEPVRPPRLPLAGDERKAVEALIRRSIEMRPALPKL
>CP026106.1|AUT71046.1|844851_845535_-|TetR/AcrR-family-transcriptional-regulator
MKKGSRAIAPEHNETPNEPSEPRRKYDPEETKRNILEVATQEFSSMGLTGARVDAIAERTNTTKRMLYYYFGSKEGLYEAVLEKVYGDIRALEQDLKVSDMSPVDGLRSLVEFTFDYHDKHRDFVRLVTIENIHGAKYIEQVKTFKNRNATVIHTIEDLLARGVASGDFRDDIDPIDLHLLISSLCFHRIANRHTFGNAFGRDPSHSRLRARHRAMIVDATLRFVKR
>CP026106.1|AUT71047.1|845651_846929_-|FAD-binding-oxidoreductase
MQSYYEATVERPVRPALAGNLSANVCIVGGGLAGLSTALGLAERGVRDVVVVEANQVGYGASGRNGGFVFGGYSLDCADLLKILGPARARELYALTIDAVDLMRARIERYAIACDATDAGVILANWFDDPSRLDGQRRLMKETFGVEWEPLGAAELGARLKTTRYHGGLFERNAFHFHPLKYVLGVARAAEAAGVRIVEQSPVASLRRQGGGFVVGTAQGSIDARHVVMAGGGYARNVYRRVERAVLPIATYVMATEPLGARLADAIDCRSAVYDTRFAFDYYRPLPDTRILWGGRISILEREPEAIARLLRRDLLKVYPQLRDVRVDHAWGGLMSYARHKMPQIGQSADGVWYAVGFGGHGMAPTTVSGELLAAAIAGERPVPDAFAAFGLTHTFGALGLAAAQLTYTAMQTRDALADRSRRSG
>CP026106.1|AUT71048.1|847298_850376_+|glycosyl-transferase-family-51
MNRPLRFPLRAIGTTSAWKWFKWLFFASFLVAVALGVRFVQIEMDTSRLQARYLSEMTRDVGFTVSEGPSDNIRFPTDGPYDIRLGYALLPAFERRLKERGFSVASQARDSERMASLADDGLFIPYEEKDQAGLMLYDSTGTRLFGSQYPARVYDDFESVPPLVVSALLFIEDRHLLDPDQPNRNPAIDWGRFSRALMDQGLRVFNHAQAQPGGSTLATQIEKFRHSPGGRTATPKEKLRQIASASVRAYLDGPRTMPAREQIVVRYLNSVPLAAQPGIGEINGIGDGLTAWYGRDFAEVNRVLKAPSTPDNLAEQGLAFRQVLSLMIAQRGPSHFLLRKNDDLNALTESYLRLFATNGVITPQLRDAALSQQLVLTRAKLAPPEGSFVERKAVTSLRTHLLSSLGVSTLYDLDRLDVRVTSTMNNKVQQAISDRLAAATTKDGAQAAGLYGFNMLQPKDDPSKIALSFTLFEKRDGANLLRVQTDSVNRPFDINSGARLNLGSTAKLRTIITYLQIMQDLHARYGQMSVEELRAVKPEREDALTRWAVDYFMHTKDQSLSAMLDASVERKYSANAGETFFTGGGAQTFTNFEADENSRILTVHQAFQHSVNLVFVRMMRDIVHYETIRTSGPSSQWLDDPATRNMYLTRFADQESRVYMNRFYTKYHGKTQDEMLAILLRGVRKSPPKIATVLRSVRPDGSQAWFNDQMRAALKNTPKANPPDDALAKLYEKYAIDKFNLNDRAYISSVHPLELWLVDYLREHPDANANQVMDASRDVRADSYKWLFKTRYHATQDRRIRRMVEQHAYDAIARSWQALGYPFSHLTPSYAAAIGASGDRPAALAQLIGVIVNKGNQAPTQSLSELEFAKGTPYETRFVPATPQPTEAISPEIARVAQTLLRDVVAGGTARRLAGGITFPNGKTLEVYGKTGTGDQRLNIYAKGRRLIESRKVNRTATFVFAIGDRFFGSLTAVVHEPYAKRYDFTSALAVQLLKSMAPELQPLLDEPASKDTPKVAASTGPKVQ
>CP026106.1|AUT71049.1|850369_851593_-|ROK-family-transcriptional-regulator
MDTGTRSPLKRTVGSNQVGMRQFNERIVLQAIRLHGQLPKADVGRLTRLSMQTVSMIVERLIDDGLLEKQARVRGRIGQPSVPIALRAEGAYTIGVKVGRRSLDVLAMDFLGRVCCREVQEYAYPDPRTLFPALESKLARINEALGARREKVVGVGVAAPLWLGGWRDFLGAPREALDAWNDIDIRARIASMTGLPVEFAKDTTAACAAELVMGQGRGIHNFLYLFVGTFIGGGLVIDGRLHGGPHDNAGAVGSIPIMSGNARQPAQQLLHAASGFVLEKLFVDAGAPATAAHDHRALSPDLWRLTEQWLDTACPAIAGALTNAAALLDLEAVVIDGEVDRQLVREIIRRTERVLDKFEWEGIVRPQLLEGTIGSDARAMGGAILPLYAHFAPMHELFLKPATDVSY
>CP026106.1|AUT71050.1|851623_852424_-|sugar-ABC-transporter-ATP-binding-protein
MSTTPSSTNGTTPVLQARGLIKRYGQVTALDGCDFEVMPGEIMAVIGDNGAGKSSLIKALSGALVPDEGDLLLDGKAVKFRSPLDARQQGIETVYQDLAVAPAMSIAENLFLARELVKPGWRGKIFKIIDKRRMLEEATNAMKDLQIGIRSMRQAVETLSGGQRQGVAVARSAAFARHVVILDEPTAALGVKEGNMVLELIRRVRDRGLPVILISHNMPHVFEIADRIHIQRLGRRAALVNKSDIHMSDAVAIMTGAKQADVRAIA
>CP026106.1|AUT71051.1|852446_853436_-|ABC-transporter-permease
MSTPTAPAHTHRRFADHLPTLAEAGPLVALLLACIFFISQSDRFLSFQNLSLIMQQTMVVAVIAIGQTLIVLTGGIDLSCGMLMAFGSIVMTKFAVALGVPPVIAIACGVAASMLFGLLNGVLITRIKLPAFIVTLGTLNIAFAATQLYSNAESVSNLPDAMMFFGNTFNLGPATVTYGTVLTLLMYLGTWFVLRDTVPGRHLYALGNNPEAARLMGLSAQRILITVYTLAGALYGIAALLSVSRTGVGDPQAGQTENLDSITAVVLGGTSLFGGRGSIAGTLLGALIVGVFRNGLTLMGVSSVYQVLITGILVILAVAADKLSRRGAR
>CP026106.1|AUT71052.1|853569_854598_-|sugar-ABC-transporter-substrate-binding-protein
MNPISRRQLRRASRTQPVVKGIAAACVAASALWCASASLAADQPVVGLITKTDTNPFFVKMKQGAESAAQKDGAKLLTAAGKFDGDNAAQVTAIENMITAGAKAILITPSDTKAIVPSIKKARAAGALVIALDTPTDPQDATDALFATDNFKAGVLIGQYAKAALGGKPAKIATLDLAPGVSVGVLRHNGFLQGMGVKEGDPSIVCSQDTRGDQSKGQTAMENCLQKAPDINVVYTINEPAAAGAYRALKSAGKDKSVMIVSIDGGCEGVRNVKAGAIAATSQQYPLKMAELGVQAGVEYAKTGKKVSGYHDTGVTLITDKPQGGVDSKDTKFGLDNCWGNK
>CP026106.1|AUT71053.1|855039_855942_+|YihY/virulence-factor-BrkB-family-protein
MNRTHNRALHFVATHPARFALQVVKAFRKNQGLLLAGAIAYYALLSIVPLLILVAIAFSHFVGEKLLLDTLARLLEWLVPGQSRAIVRELANFLAHRTVIGWFLVVTMIFFSSLAFTVLENALSIIFVHRVAIRRRHFLLSATLPYLFSLSLGIGVLLVTLVSSSLQSVASDSIVLFGHTISLTGATRIVLYLFGLAGEIFVLTAIYLVIPAGRTTLRHALFGAVAAAVLWEVTRRVLVWYFATLSQVSVVYGSLTTAIIVLFSLEALATLMLFGAQLIAEYERLNAGPIEPAAQPFVTS
>CP026106.1|AUT71054.1|856187_858578_+|HAMP-domain-containing-protein
MTIRHRITLLVVLMLVALSAIGGYAVYQTRGSAADVRQVTQGVVPSALASADLVSQVKDVQLATMTLVYSPDANMVEQAQKELAAKEKSLREALDLQAKAAASHAQEGLVTQARDSLANYFAAINDTAKMKAEGKNDLAQAYLFANVAQYRDELEGIVETLRIEKNRQKDEAIDALNTGLATTTTAIGSASGAAILVLIAIGLLLYRQITRPLSRMQEMMSEIASSQDFTRRVPVGRMDEIGHSIVAFNGMIEKIQQSSAQLKQKTADIQAMLQNMQQGILTVVEDAKIHSEYSAYLEEIFETNDIAGRALMDLVFGDSDLGSDTVSQVEAAVLACIGEDSINFQFNQHLLVNELTRKMPDGRVKTLDLSWSAITDESDTVMRLMLCVRDVTELRQLAAEAGEQKRRLEMIGEILSVSEEKFHHFVESATGFINENERIIRQHAQVNEPAVAELFRNMHTIKGNARTYSLQHLTSIVHETEQRYDALRQPEAAHEWDQEQLIAELARVKEALQHYATINEVSLGRRKAGRVGSAERYLMVDREHIQESLRLLDAANPADMLDLLTARDSVRRTLRLLGTEKVEEALAGVLHSLPSLAAELGKTAPAVRIDDNGYRVRTQAGSMLKNVFMHLLRNSVDHGIEPTAQRVALGKPEAGVIDIEVGVAEGALQITLSDDGRGLALSRIRGIAADRGWLQPDTQLSDEAVAEFIFRPGFSTAQNVTEVSGRGVGMDAVRDFIRREGGRIELRFTDDHAGADFRQFQTIVYLPENCAVDSVGTSMHDAAQTVSSIQANAHFE
>CP026106.1|AUT71055.1|858595_859336_+|chemotaxis-protein
MVDQYVIAAALAGVAWGALAGLFVHRWWYRKRAAAQRQTTVDAQSTALAQAEERHAAEVRQHEQQARELHALVDTLRDDLAQQSVSAEEAREALNALHLQKDEWLQQATRLSTEAGRLRHLSATFERWHEQMISLMSQNHDMHSKNNELSSIVRHVLIVSLNASIEAARAGAAGRGFSIVASEVRSLAARSQELSKSYHDSLNRNDLITTATFQDIQAGGKMIAASLASVEALAGQIQSRLEQATT

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Crispr_ID: CP026106_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_3

961305-961496

Orphan

Consensus_repeat	Method
CGCGGATGCCAGCGAAAA	CRT

3 spacers

The CRISPR arrays of CP026106_3

>merge|CP026106|3|961305-961496|CRT
CGCGGATGCCAGCGAAAAGGCAAACCCACAGGGGCGACGCATGAAGCACGAAAAGGCAAAGCGCGGATGCCATCGAAAACGCAAAACCACACCGGCAAGACATGCGCAGCAAACACTGCCTCGCGGATGCCAGCGAAAGAACAAACCAAAACCGGCCACGCCACGAAGGCAAAGCGCGGATGCCAGCGCAGA

>CP026106|3|1|961305-961496|CRT
CGCGGATGCCAGCGAAAA	GGCAAACCCACAGGGGCGACGCATGAAGCACGAAAAGGCAAAG
CGCGGATGCCATCGAAAA	CGCAAAACCACACCGGCAAGACATGCGCAGCAAACACTGCCT
CGCGGATGCCAGCGAAAG	AACAAACCAAAACCGGCCACGCCACGAAGGCAAAG
CGCGGATGCCAGCGCAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT71131.1\|955651_955849_+\|DUF1653-domain-containing-protein	unknown	unknown	gnl\|CDD\|377930
CP026106.1\|AUT71134.1\|957478_959425_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
CP026106.1\|AUT71136.1\|960307_960598_+\|DUF1488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377825
CP026106.1\|AUT71133.1\|956239_957376_-\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153124
CP026106.1\|AUT71145.1\|973099_973534_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238779
CP026106.1\|AUT73031.1\|964733_965516_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|236910
CP026106.1\|AUT71137.1\|961514_963731_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
CP026106.1\|AUT71140.1\|967625_968489_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|188637
CP026106.1\|AUT71132.1\|955859_956234_-\|ferredoxin	unknown	unknown	gnl\|CDD\|181058
CP026106.1\|AUT71135.1\|959730_959997_+\|DUF2964-domain-containing-protein	unknown	unknown	gnl\|CDD\|314178
CP026106.1\|AUT71138.1\|963727_964720_-\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
CP026106.1\|AUT73030.1\|953887_954853_+\|ornithine-cyclodeaminase	unknown	unknown	gnl\|CDD\|225280
CP026106.1\|AUT71141.1\|968814_969945_+\|M23-family-peptidase	unknown	unknown	gnl\|CDD\|366703
CP026106.1\|AUT71142.1\|969937_970333_+\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71143.1\|970370_970817_+\|polymer-forming-cytoskeletal-protein	unknown	unknown	gnl\|CDD\|377376
CP026106.1\|AUT71128.1\|951408_952653_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223737
CP026106.1\|AUT71139.1\|965928_967221_-\|aspartate-carbamoyltransferase	unknown	unknown	gnl\|CDD\|183362
CP026106.1\|AUT71129.1\|952772_953552_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
CP026106.1\|AUT71130.1\|954943_955588_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225512
CP026106.1\|AUT71144.1\|970839_972909_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	unknown	unknown	gnl\|CDD\|236645

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT71131.1\|955651_955849_+\|DUF1653-domain-containing-protein	gnl\|CDD\|377930	pfam07866, DUF1653, Protein of unknown function (DUF1653). This is a family of hypothetical bacterial proteins of unknown function.	1.94568e-22
CP026106.1\|AUT71134.1\|957478_959425_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	5.82401e-153
CP026106.1\|AUT71136.1\|960307_960598_+\|DUF1488-domain-containing-protein	gnl\|CDD\|377825	pfam07369, DUF1488, Protein of unknown function (DUF1488). This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.	3.09314e-25
CP026106.1\|AUT71133.1\|956239_957376_-\|rubrerythrin-family-protein	gnl\|CDD\|153124	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	1.45175e-94
CP026106.1\|AUT71145.1\|973099_973534_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238779	cd01521, RHOD_PspE2, Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.	6.41785e-64
CP026106.1\|AUT73031.1\|964733_965516_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|236910	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional.	1.99484e-87
CP026106.1\|AUT71137.1\|961514_963731_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
CP026106.1\|AUT71140.1\|967625_968489_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|188637	cd00950, DHDPS, Dihydrodipicolinate synthase (DHDPS). Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.	2.31442e-114
CP026106.1\|AUT71132.1\|955859_956234_-\|ferredoxin	gnl\|CDD\|181058	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated.	2.96925e-23
CP026106.1\|AUT71135.1\|959730_959997_+\|DUF2964-domain-containing-protein	gnl\|CDD\|314178	pfam11177, DUF2964, Protein of unknown function (DUF2964). This family of proteins with unknown function appears to be restricted to Proteobacteria.	2.99566e-25
CP026106.1\|AUT71138.1\|963727_964720_-\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	3.26954e-89
CP026106.1\|AUT73030.1\|953887_954853_+\|ornithine-cyclodeaminase	gnl\|CDD\|225280	COG2423, COG2423, Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism].	7.17023e-62
CP026106.1\|AUT71141.1\|968814_969945_+\|M23-family-peptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	2.08733e-43
CP026106.1\|AUT71143.1\|970370_970817_+\|polymer-forming-cytoskeletal-protein	gnl\|CDD\|377376	pfam04519, Bactofilin, Polymer-forming cytoskeletal. This is a family of bactofilins, a functionally diverse class of cytoskeletal, polymer-forming, proteins that is widely conserved among bacteria. In the example species C. crescentus, two bactofilins assemble into a membrane-associated laminar structure that shows cell-cycle-dependent polar localization and acts as a platform for the recruitment of a cell wall biosynthetic enzyme involved in polar morphogenesis. Bactofilins display distinct subcellular distributions and dynamics in different bacterial species, suggesting that they are versatile structural elements that have adopted a range of different cellular functions.	1.20589e-25
CP026106.1\|AUT71128.1\|951408_952653_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223737	COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism].	7.08644e-57
CP026106.1\|AUT71139.1\|965928_967221_-\|aspartate-carbamoyltransferase	gnl\|CDD\|183362	PRK11891, PRK11891, aspartate carbamoyltransferase; Provisional.	0
CP026106.1\|AUT71129.1\|952772_953552_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.88014e-118
CP026106.1\|AUT71130.1\|954943_955588_+\|hypothetical-protein	gnl\|CDD\|225512	COG2964, COG2964, Uncharacterized protein conserved in bacteria [Function unknown].	1.39857e-68
CP026106.1\|AUT71144.1\|970839_972909_-\|bifunctional-diguanylate-cyclase/phosphodiesterase	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.66114e-115

>CP026106.1|AUT71136.1|960307_960598_+|DUF1488-domain-containing-protein
MQIIFPKEVPEYSGRELTLAFPAMVDGQRVECTITAEALEDHFGAASPRLEDMMGAFSTHRERIEAATRRLLSETRAQCVVLRSGYVRFYEANWRN
>CP026106.1|AUT71135.1|959730_959997_+|DUF2964-domain-containing-protein
MVRMELRVVLATVAIFIALGGIGLSIHGSLYYLNDEIWMGVIAIVVSIVGCVTMLTLWPRDLPGKTPPEHPADDVGPHEHHPHLPTQF
>CP026106.1|AUT71134.1|957478_959425_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTQRSVTPSVTGRADALAQAHARSRDFGLRASEAPDFHPLRPLALRDLVDCNRSLYAHALPVMETLHAQIVDTDSMVLLTDSNGVILHSLGDSDFVEKAERVALCPGVSWSEAHRGTNAVGTALAEGQPTVVHGGEHFLQANRILTCSCAPIADPYGRTIGALDVSGDPRGFHKHTLALVRMSAQIIENQLFANQFGDAVRVRFHARSEFIGTLFEGLAAFGADGALLAANRSALFQFGRPLDTLFGQPFEMLFGTAFPAALQQALRAPGECLTLMLPSGVRVLARAEYAARPAFSADSGGPRTATASPVAPTSGKPRAAAITFATLDTGDARMAAVLDRVEKVRGRDIALLVLGKTGTGKEWLARAMHEESPRRAAPFVAVNCASLPDTLIEAELFGYEDGAFTGARKRGNVGKIVQADGGTLFLDEIGDMPLAQQVRLMRVLQERCVVPLGGTRAVPVDVRVVCATHRNLRAMIEEGTFREDLYYRINGLVVTLPALAERTDLPVLVERILARLRSDEPDSERMPTRVSQDALEYFTRCRWPGNLRQLANVLRTAGIMAEGAAEIDVEHLPDDFLHDCEPASDEPLRALPAVESSAPSRPARMEELQATLIEQTLARNNGNISAAARELGLARNTVYRYMRIRTTH
>CP026106.1|AUT71133.1|956239_957376_-|rubrerythrin-family-protein
MATRHELKRFRTNLADELDSAALYETLSRVEKDPQRRTLFTQLASAERVHANLWANKLHANGARVPPHRYSVKTHLMRGLIHTLGPKFVLPSLAAAEYADRDKYANQPDAAQLSKDEQHHAAVMQQMVADIKAQKTLPSKGAQIAAAESWHRNVTSGNDLRAAVLGANDGLVSNFCLIMGVAGAGTGNKAILLTGLAGLIAGACSMALGEWLSVTNARELARTQIAKEADEIEHTPEAEQHELALIFQSKGIDADEAKRVAAQIMRDKQKALDTLTREELGLDPAELGGNPWTAAGVSFCLFSLGAIFPAMPFLWTHGTAAIAQCVALSAFGLAAVGVFTSLFNGRGAAFSAFRQIVIGLIAAAFTFGVGRLLGVSIS
>CP026106.1|AUT71132.1|955859_956234_-|ferredoxin
MSSEEPSRSAPPHESNEERTFTVRVEPLGRTFDAPESLTVLEAAGFANLHLPRMCRNGTCRTCLCKLESGSVRYTVEWPGVSAEEKAQGYILPCVAVAQSDLVLDAPDAADIPSAPTTPPIRRF
>CP026106.1|AUT71131.1|955651_955849_+|DUF1653-domain-containing-protein
MTVRYRHYKGGIYEFICEATLESDPSVTMIVYRADNGTIWTRPASVFFEMIEHEGQTVPRFAPIN
>CP026106.1|AUT71130.1|954943_955588_+|hypothetical-protein
MRKKNTSPVKDLLLTRYAPIADGIAALFFPYAEVVIHDLHDQTVLYLANNLSKREIGDDSALEETEHSARERVIGPYEKLNWDGRRMRCVSNVLFDDNGQPAGMLCINFNIAVFDDVRSTLDLFIKGAGVVAQPEELFRDDWQERINTFLHGWLRERQVGLNGLTREHRRELVEALYAEGAFRGKSSANYVANVLGMGRATVYKHLKQMKEGAS
>CP026106.1|AUT73030.1|953887_954853_+|ornithine-cyclodeaminase
MMTALPLAVDELAVRAALPALDVRRALTAMFRALASAEAVQPPQTLTLFPNGAGDFITYLGVLADAKVFGAKLSPYIVTGSKPVITAWTALMSMETGQPLMWCDAGLLTTERTAGTTALAVDQLARADAKRLAIIGAGAVGLAHLRHVAPLRAWESIRVYSPDLAASDAKRAAVQSADARAEASASIEACVKDADVVMLCTSSGTPVLPRDALTKPALITSISTNAVNAHEIDPAWLPEMDVYCDYRATTPASAGEMKLAAQHGWSPQKVKGDLPSLLAGTCEKPAYARHAFFRSIGLGLEDVAIASELYRHLTDRGDQAQ
>CP026106.1|AUT71129.1|952772_953552_-|ABC-transporter-substrate-binding-protein
MNLKLSFAAAVLAMTAGAACAQSSDTLRFGIEAAYPPFESKTASGQLEGFDVEVGNAVCAKMKVKCVWVENAFDGLIPALQARKFDVINSAMNITAKRKESIAFTPPIYVVPIVMIAKRGSNLLPDVKSLQGKHVGVLQGSSQEDFLKKHWANAGVQIVSYQDQDQVYADLTAGRLDAAVQEAQTAQDGFLSKPAGAGFAMVGEPLKDPSTLGEGTGFGLRKGDKALQAKVDAALAELKKDGTLTALSQKYFKRDIIAK
>CP026106.1|AUT71128.1|951408_952653_-|FAD-binding-oxidoreductase
MDFDVIVLGAGIVGVSSALHLQDRGRRVALVDRRAPGEETSFGNAGLIERSSLVPYGFPRKIGTLLRYARNQSTDLYWDYKALPAYAAWLARFWWESSPQRLATAARDLTPLIGACVDEHDKLIARAGVGQLVHDGGWIEAFRTRAAFDSEARASEDAIREHGLHVSVLDAAALHAQEPSVGEGICGAIHWKDPKSVLNPGALVKGYARLFEANGGTFVNGDAATLRSSGDAWTVETQHGTVSAKEVVLALGPWSDTVFEPLGYRIPLRAKRGYHMHYRPARQMLSVPIVDTERGYVIAPMEGNRLRLTTGVEIAERGAPPTGIQLERVEPLARVTFGLGERVDDKPWLGMRPCTPDMRPVIGPAPRHRGLWFAFGHNHHGLTLGPVTGRLLAEMMTGETPFADPRPFRVERFG
>CP026106.1|AUT71137.1|961514_963731_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MNTMIGHPLDRTDGLLKVTGEARYAAEFPEARLAHGVLVTSTIAKGAIASIDASRASALPGVLLVMTYQNAPRLPNGGRPALSPPAGRHLSLLQDNQIHYSNEPIAVVVADTLEHATDAARQLRITYAAQPAALDFTQAKSSAHAPDKPQGRQTDTSRGDYDAGLAAGVVRVDAVYTTPMEHHNPMEPHATMAVWDGPQLTLYDSTQGVTGTRTSVAKTLGMSPDDVRVISPFVGGGFGCKGSAWSHVVLCAMAAKQTGRPVRLALERPQMFGSVGGRPFTEQRMVIAAKRDGTLTAMRHDSFSNTSMIEDWTETCCMVSRMMYAVPNQVTTHRLVQLNVGTPTFMRAPGETTGSWALETAMDELSYQLKMDPIALRLKNYAENDPQENKPWSSKALRQCYSVGAERFGWSRRKPQPRSMRDGNTLIGLGMGTATYPANRSEAAALARILPDGTAMVVSGTQDLGTGTYTVMTQVASDALGIAPENIRFGLGDSSLPKAPVSGGSQSVASVSPAVRDACDQARGKLVAMALADRGSPVFGVSPDDVVVQNGWVTSRADPSKRDPIAAVLARAGGQPIEATTSTKPGDEKQRYSFHSWGAVFAEVHVDADLGSIRVARLTGVYNVGRMLNVKTARSQLMGGLVWGIGAALEEATMLDKQYGRFINANLAEYHVPVNADVGALDVLVLDEPDPFINSLGSRGIGEIGITGVVAAIGNAVYHATGVRVRDLPITLDKVVMV
>CP026106.1|AUT71138.1|963727_964720_-|xanthine-dehydrogenase-family-protein-subunit-M
MDAISYERAADITSAVRAAQQPGTMFIGGGTNLLDLMKGGVTRPVRLVDITRIQGLDIVSTLPDGGLRIGALVRNSDAANHALVRARYPLLSQALLAGASAQLRNMATVGGNLMQRTRCPYFYDTAFTACNKREPGSGCAAINGHNRTHAILGASTQCIAVNPSDMSVALAALDANVRVSGPQGERVIAFGEFHRLPGERADLDTTLRPGELITSVDLPPPIFSEHAYYLKVRDRASYAFALVSVAAALQMDGNTVRSARIALGGVAHKPWRATAAEQMIAGKPLDNATLKNAAAAALNDARPLHDNAFKVRLAQNAIVRAVNQAAGGVA
>CP026106.1|AUT73031.1|964733_965516_-|(2Fe-2S)-binding-protein
MSHHNDCQGSCPQHDAHTSRQDEDDVSPSSTSRRRFLQSAAAAAAVTTAPYTHAQTQTPPAAQPVARTTVPPRAVKLNINGRDYTLQLEPRVTLLDALREYAGLTGTKKGCDRGQCGACTVLANGRRINSCLTLAVMHEGETITTVEGLASNGTLNPVQRAFIEQDAFQCGYCTPGQICSATALLTEFDAGTASTVTADVRRRPPQLTDEEIRERMSGNICRCGAYVNIVAAVQSAHRGTVGSGTDYTYSTFVIKTSDVA
>CP026106.1|AUT71139.1|965928_967221_-|aspartate-carbamoyltransferase
MSVPQQAFLRDAMRRLNLTRDGFATRIGVSKRALDTWLLPDDSQESRAMPEIVERFVSEIVVNGAPAEKHTQSVDSQSLASQMLFEGKPQLLSVDQFSRDAVEALFRVADIMQPIARRRKISRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTTGFTFSSMAKGESIYDTSRVMSGYVDALVIRHPDQGSVAEFARATNIPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIAMVGDLKYGRTVHSLVKLLALYRGIKFTLISPPTLEMPAYIVDQISRNGHVVEQTHDLTNGLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDTVCGQDTLIMHPLPRDSRPGANDLSTDLNHDSRLAIFRQTDNGIPVRMAIFAVLLGVEKLVQHSMRDAAWRPPAYLGPDDAVFHGID
>CP026106.1|AUT71140.1|967625_968489_+|4-hydroxy-tetrahydrodipicolinate-synthase
MFNFSGIWIPLVTPFSANGAVDHGALRRLIRLYADAGVAGVVALGTTGEPSSLEPGEQEAVLATTLDAAGGALPVIVGVSGNNARAVRERVLRLNALPLAGVLISAPYYVRPSQAGIAAHFTMLADASEHPVVMYDIPARTGVRIELETLLSLAAHPRIQAIKDCAGSLDTTHALILDGRLQVLAGDDIRIFDTLCMGGSGAIAASAHVWPERFVALDRALKAGRLDEGRALFHSLVPLIGALTAESNPAPVKAALAVQGLMEGDLRAPMTQASEMLRERLQELLGV
>CP026106.1|AUT71141.1|968814_969945_+|M23-family-peptidase
MSLIWGTGRSLTNGSVRFVTRHTALTIAALVACGSSVLTLTAGIVIGRDHPKRDAATQASDNRVARDYTIAELGKLNAAIEQMEPRLTQLASQVATLHDFETRLKTIKTLPRPVFAPPVLSASDVLGDDAGDDVTDGAAQKSEKARPSAKGAARAAPKRDADDHDGPSTGKPAEQPLDKASETAAENGEGGPSLPPRRCDELTGHPAHDALAIHEQIACLVTTLSALEQEATLHVANWESFPGRMPVDGARFGSPFGNRVDPFTHHLSFHPGVDLVALPGTPILAAAGGRVIHAGPQGGYGNAVEIDHGNGLITRYGHASRIVVQEGDLVLPRQHIADVGSTGRSTGPHLHFEVLVNGAPVDPTDYLALFMGPSHG
>CP026106.1|AUT71142.1|969937_970333_+|hypothetical-protein
MADLLRPGRRRVRVRGHVRGHVVTQRTYALQPVRSLAVRISVWALVCIACMAAGAAAMRGYARPDASAGPSCVAPAAHDELQDALARAQLTLMQESASRASVQKSADALTVEVRRLQAQVLFLQGQSRSRR
>CP026106.1|AUT71143.1|970370_970817_+|polymer-forming-cytoskeletal-protein
MFSKKKSPGVSQNKLATLIAHDVTITGDIEFSDGLRMDGHVKGNVAGKAGCETLLVLSNRGSITGNVYGYDVIVNGRITGDVIADHFVELQENAYITGNIYYQQLRMDVGASVDGKLTRRDVAPTPASPHIEPATFALQKADVSTIDQ
>CP026106.1|AUT71144.1|970839_972909_-|bifunctional-diguanylate-cyclase/phosphodiesterase
MQSTYYLGLVVVSLAVATLASYTALDLAGRISTMASARLRHLWLAGGAAAMGTGIWSMHFIGMLAFSLPIPLGYDFAITSYSLIIAMIVSYFALVQVARPTLSARRLVTGGLLMGFGIAGMHYTGMAAMQMQPGIHYRPGLFAASVAIAIAASMAALWIAHTLRDSRQHRVLIKRIGAACVMGIAITGMHYTGMAAADFLPGSVCGAARGVNAQWLATTIILFTFVILIVTLILSRFDAHTTFLAGSVSSLNNQIVRLATYDTLTDLPNRRTLNEHIERAIHASKQTRRGFAILFMDLDGFKTINDSLGHAFGDEVLKSFAQHLRQCVRNVDTVARLGGDEFVVLAENIGAPRDAERMAEAVLERMREGISTQSQMLQIMPSIGIALYPQDGSSVDELLKHADAAMYEAKRGGRSTYRFFEAHMNEAAMRTLKIQSALHEALGKGYFSLHFQPKFRGDSGAVAGAEALIRLNHPEIGVLPPMDFIPIAERSGQVVEIGYWVVRETCRQIRRWESAGLPSMKIAINLSPRQMAQPDLVAKILEIVHAEGVDCNQIMFEITETVAMQDAAKTTEMIREFQNSGFEISIDDFGTGYSSLAYLQRFRVKQLKIDRFFTSGLDADGHEGSAIVQAIIALAHSLEMDVVAEGVETASQLDKLKDLQCDEMQGFLLGKPLTADAFSELLQERMPTT
>CP026106.1|AUT71145.1|973099_973534_-|rhodanese-like-domain-containing-protein
MAPSTVSAVPAADSASALAHFESSLRFETDCWDVSDTLASGNADFVLLDVRSPELFARGHIPGALNLPHRKIIESKLREYPADTLFVTYCAGPHCNGATRGAIRLAKLGRPVKIMIGGVTGWLDEGFALETQAASACTEMEQEP

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Crispr_ID: CP026106_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_4

983975-984060

Orphan

Consensus_repeat	Method
CGCGGATGCCAGCGCAAACACAAGCAAA	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of CP026106_4

>merge|CP026106|4|983975-984060|CRISPRCasFinder
CGCGGATGCCAGCGCAAACACAAGCAAAACCAAAACCGCACGCGCCACGAAGCCAAACCGCGGATGCCAGCGCAAACACAGGCAAA

>CP026106|4|3|983975-984060|CRISPRCasFinder
CGCGGATGCCAGCGCAAACACAAGCAAA	ACCAAAACCGCACGCGCCACGAAGCCAAAC
CGCGGATGCCAGCGCAAACACAGGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT73032.1\|974637_975210_+\|hydrogenase	unknown	unknown	gnl\|CDD\|377416
CP026106.1\|AUT71146.1\|973632_974598_+\|transcriptional-regulator-FtrA	unknown	unknown	gnl\|CDD\|181818
CP026106.1\|AUT71155.1\|986613_988041_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP026106.1\|AUT73033.1\|977093_978233_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|226434
CP026106.1\|AUT71147.1\|975712_976783_+\|histidine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270359
CP026106.1\|AUT71161.1\|992088_992418_-\|transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
CP026106.1\|AUT71159.1\|990341_990878_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026106.1\|AUT71162.1\|992872_993151_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71160.1\|990950_992012_-\|alkene-reductase	unknown	unknown	gnl\|CDD\|239243
CP026106.1\|AUT71150.1\|979752_980661_-\|amino-acid-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|236763
CP026106.1\|AUT71157.1\|988433_989588_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
CP026106.1\|AUT71149.1\|979392_979614_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71153.1\|982371_983229_+\|NmrA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|187542
CP026106.1\|AUT71158.1\|989618_990230_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP026106.1\|AUT71156.1\|988070_988379_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|214629
CP026106.1\|AUT71154.1\|984095_986420_-\|CbbBc-protein	unknown	unknown	gnl\|CDD\|239168
CP026106.1\|AUT71163.1\|993382_993745_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71152.1\|981307_982240_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP026106.1\|AUT71151.1\|980869_981298_+\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT71148.1\|978374_979298_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT73032.1\|974637_975210_+\|hydrogenase	gnl\|CDD\|377416	pfam04891, NifQ, NifQ. NifQ is involved in early stages of the biosynthesis of the iron-molybdenum cofactor (FeMo-co), which is an integral part of the active site of dinitrogenase. The conserved C-terminal cysteine residues may be involved in metal binding.	4.30948e-43
CP026106.1\|AUT71146.1\|973632_974598_+\|transcriptional-regulator-FtrA	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	0
CP026106.1\|AUT71155.1\|986613_988041_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.62028e-132
CP026106.1\|AUT73033.1\|977093_978233_+\|histidine-kinase	gnl\|CDD\|226434	COG3920, COG3920, Signal transduction histidine kinase [Signal transduction mechanisms].	1.06549e-41
CP026106.1\|AUT71147.1\|975712_976783_+\|histidine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270359	cd13641, PBP2_HisX_like, Substrate-binding domain of ABC-type histidine transporter involves in betaine and proline uptake; the type 2 periplasmic-binding protein fold. This subfamily is part of a high affinity multicomponent binding-protein-dependent transport system specific to certain quaternary ammonium compounds for osmoregulation. The periplasmic substrate-binding domain, which is often fused to the permease component of the ATP-binding cassette transporter complex, is involved in uptake of osmoprotectants (also termed compatible solutes) such as glycine betaine, proline betaine, choline, and carnitine. Many microorganisms accumulate these compatible solutes in response to high osmolarity to offset the loss of cell water. This domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.80441e-110
CP026106.1\|AUT71161.1\|992088_992418_-\|transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.06226e-15
CP026106.1\|AUT71159.1\|990341_990878_+\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.45651e-10
CP026106.1\|AUT71150.1\|979752_980661_-\|amino-acid-ABC-transporter-substrate-binding-protein	gnl\|CDD\|236763	PRK10797, PRK10797, glutamate and aspartate transporter subunit; Provisional.	3.099e-141
CP026106.1\|AUT71157.1\|988433_989588_-\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	4.05647e-13
CP026106.1\|AUT71158.1\|989618_990230_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	2.95432e-30
CP026106.1\|AUT71153.1\|982371_983229_+\|NmrA-family-transcriptional-regulator	gnl\|CDD\|187542	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs. Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.33491e-78
CP026106.1\|AUT71160.1\|990950_992012_-\|alkene-reductase	gnl\|CDD\|239243	cd02933, OYE_like_FMN, Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.	0
CP026106.1\|AUT71148.1\|978374_979298_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	5.667e-160
CP026106.1\|AUT71154.1\|984095_986420_-\|CbbBc-protein	gnl\|CDD\|239168	cd02767, MopB_ydeP, The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
CP026106.1\|AUT71152.1\|981307_982240_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.24867e-78
CP026106.1\|AUT71156.1\|988070_988379_+\|transcriptional-regulator	gnl\|CDD\|214629	smart00346, HTH_ICLR, helix_turn_helix isocitrate lyase regulation.	0.000104225

>CP026106.1|AUT71153.1|982371_983229_+|NmrA-family-transcriptional-regulator
MYAITGITGQVGGVVARTLLAQGKQVRAVVRSEEKGAAWAARGCEVALAEMHDRDALLRAFEGAEGVFVLLPPVFDPSPDFSESRRNIAALRAALSEAKPGRVVVLSTIGAQATQPNLLNQLGIMEQELGTLPLPVVFLRAAWFFENFVWDVEPARANGVIPSFLQPLDKPVPMVATDDIGRVAAELFQDAWTGARVVELEGPRRVTPDEIAAAFASALDRSVRMQIVPRDEWESLFLSQGMNNPLPRMQMIDGFNEGWIEFEAPPASVKGDVTVEMVVRQLVKS
>CP026106.1|AUT71152.1|981307_982240_-|LysR-family-transcriptional-regulator
MSFDERILNGMGVLTAIVESGSFAGASERLDMSQSGVSRSVARLEARLGIRLFDRTTRTVKLTDEGLRLYEQIVPLMDGLEEAAASAAGGATAVRGRLRVNVDPFFSKIVLSPRIGEFVARYPELNLDLITRDQLGDMVADGFDLAVRFGEPRPSTLIARRLLDTRIVTAASPGYLKKHGRPLKPTDLEREPHNCIQYRDPETGRPFVWEFHRPRKKLIIDARGRLMVNDVSTMHGACLAGHGIAQIMALGTQPLFDSGRLVDLFPDWPDERFPLCALYPSRRHPSAKVRAFLDFIVKITGSPLNDKPWY
>CP026106.1|AUT71151.1|980869_981298_+|hypothetical-protein
MHAVRQWIAGIALAATLAALVPLPAAAQTNPGTMPPPTPAGDSTFLLTIFLKHDQSKPLPKINQQLADQGFYKAFPPPGIEVVSWYVMMGIGQVVTLRVPANRLREVNRAIEETAWGGYSTDFYPTYDYKAIAEQARAKNSK
>CP026106.1|AUT71150.1|979752_980661_-|amino-acid-ABC-transporter-substrate-binding-protein
MNRLTSLALALCVSAPCLMTMTNAAAQDAQPTLAKVEAANLIAIGHRETSVPFSYVDTNNQVIGFSQDLCNRIIDAVKAKTHKPNLQVRFIPVTSQNRISLVQNGTVDLECGVTTNLTSRQNQVAFGDTFFVATTRLLTRKDSGVKDFPDLAGKTVVTNQGTTSERILRKMNEEKKMNMQIISAKDYGEGRMTLETGRAVAYMMDDVLLAGTRTLTAKPADWVIVGTPQSSEAYGFMLRKGDPAFLKIVDDTLAQVMKSGEIDAMYDRWFMKPVPPKNMNFDFPMSENLRALYKNPNDKAFE
>CP026106.1|AUT71149.1|979392_979614_-|hypothetical-protein
MNPPSPKEQKTHWKPSPTLLNVMTALIGIGTLCAGIGWLVYSWYVDLEVPYFAIPLVMCVPVIVAVAFRNMFD
>CP026106.1|AUT71148.1|978374_979298_+|recombination-associated-protein-RdgC
MWFKNLQLHRLPAPWKVSAEQIEKWLEPHAFQPANSVETTRQGWASPRNDGTLVYSTNKQLLLTFRAEKKLLPASVVTQVTKARALELEEQQGFKPGRKQMRDLKEQVTDELLPRAFSIQRDTRVWIDTVNGWLAIDSASQALGDDVLGLLVKSVDRLPIMSVRVAQAPVSAMTNWLLAGDGPVNFTLDQDTELRSPAEGNATVRYVGHALEADDMRRHIEAGKQCMRLAMTWNDRVSFVLTPSLTIKRVTPLDVIKDAADPTAQNDDEQFESDFTLMTGELAKMLDGLVDALGGELADGIVPAKAA
>CP026106.1|AUT73033.1|977093_978233_+|histidine-kinase
MPKFVDHLGEKLALQDIGAQMLDHPEQLLPRLVERAMQMTGAESAGISAFEPMEGSAGIFRWRDLRGRLAPFEGATTPRNYSPCGVCLDRFEPTLTRHPERHYGWIADAGVVCPEVLLVPLYMAHGQPLGTLWIVAEKEGQFDSGHARIMRELASFAGIALAMLQNQSRLQEALAQQELLTREMNHRVNNVFFVVDAMIQIGKRSATSTAAFADTLSGRLHALAAAHALVRHSFGPGPQVQRPSIATLHALTGAIFKPYEGTSQARFSVEGNDLCLGDRAVTSLALVFHELATNAAKYGALAEDAGCVSIDWEQQGDSLAVRWEENGGPPITAPPQATGYGTRLLNNTVTRLFGGTLVSDWREQGLVVELTIPLARLMD
>CP026106.1|AUT71147.1|975712_976783_+|histidine-ABC-transporter-substrate-binding-protein
MMQSIKLRTALFAAVATAATILTAGSAHAADSNAAKSGSWCSAGKTVHFAGITWESGAFATEVLRQILEKGYGCKTDVVPGSTAATETALAHNDVQIWAEQWTGRSEITAKAVETGSVKLVGDTLPGGTKEGWFVPDYVVKGDPSRGIKASAPGLASVADLPKYKNVFTDDEEPNKGRFLNCPSGWDCERVNSRLLKVLKLDDAYTNFRPGTGAALDAAIASAYTRGAPILFYYWGPAALMAKYKLTELKMPAFNDACWQTLRNESSTQQCASSYMVSHVTVGASTPFYNAEPQLMTMFTKVKFPMDFLNATILDMSVKKLDAQTMAAQFLRTHPEMWKTWVPADVAAKVQAGIAG
>CP026106.1|AUT73032.1|974637_975210_+|hydrogenase
MTTESNHARDAEVARLLDHAPQRDAADTIMFARLIGAKFASGELLHLGLTRAALDAVCSRHFRDAAPLHAVPEHIAASAHQPFVDALRAFLLHHESSLAATDADAQCLATIIATACLRPDHLWRDLGLDGRDDVTAILTRHYPELVARNTDNTRWKKFLARELALAEGRVPAPAPGCPGCEDYAFCYPSR
>CP026106.1|AUT71146.1|973632_974598_+|transcriptional-regulator-FtrA
MQDHLVAALVYDRLCTFEFGCVTELFALERPELGVTWYRFAVCAVEPGPIRAAGGIGIAAPYSLKMLDRASTIVVPGWRDPDERPPEPLLKKIRAAVERGARVCSICSGVFVLAAAGVLDGKTVTTHWRYAEKLQQRYPQLRVKPDALYVDEGQVITSAGSAAGLDMLLHLVRRDYGSAIANRVAQRLVVPPHREGGQAQFVPRPMPQDDSSRLARLMDYVRANPAHAHTLASLADQAAMSPRTLQRQFRDATGMAPYEWLIRERVAIARELLESPADLPMSRVAELAGFGSEESLRRHFRRIALTSPGAYRKKFGASAVA
>CP026106.1|AUT71154.1|984095_986420_-|CbbBc-protein
MDKTSTKPGRIEPYIGPAAGWGALKYVAINLVKEKVAGGKYKTLFKQNQADGFDCPGCAWPDRQHASTFEFCENGVKAVAAEATSKRVTPAFFAQHTIDELMKQDDYTLEQHGRLTDPMVFDPLTDKYQPISWDAAYQLIAKHLKGLDSPHRAAFYTSGRASNEAAFLYQLFVRMYGTNNFPDCSNMCHEATSRGLPTTVGIGKGTVLLEDFEHADTLLIFGQNPATNHPRMLNELRDAAKRGATIVSINPLRERGLERFASPQHVTDMLSSGVQIASTFIQPKIGGDFALIKGVAKRVLELDDLAVEQNAERVLDVAFIEEHTANFEAFAGDLRGQSWEALVEESGVPREDIENLARIYVNGKRVISTWGMGITQHKHSVPTVHMLSNLMMMRGNIGRLGAGLCPVRGHSNVQGNRTIGIEEKPTDAFLDRLGKVFDFEPPRGHGYDVVETIEAMLEGHVKVFIGLGGNFSIATPDTPRTWEALRACDLTVHITTKLNRSHLVHGKAALILPTLGRTEIDLQNGVAQGVTVEDSMSMVHVSYGMNTPASGNLVSETRIVAQIAEATLGSAKVDWLAYANDYAKIRDAIEWSIDGFYEYNKRIEQPGGFHLRVASRERDWKTETGKANFVVHQIQRDTPIQRARRLHGERAMTLMTTRSHDQYNTTIYAMDDRYRGVYNQRRVVFVNAADIAMLGFKAGDWVDMETIWDDGIERRAERFLLVEYDIPRGCLGAYYPETNPLVPLNSVADVCNTPTSKSIPVLLRASSAPVARAA
>CP026106.1|AUT71155.1|986613_988041_+|PLP-dependent-aminotransferase-family-protein
MKLYEELAKEIEGQIRRGVFRPGERVPSVRQTSQHRQISITTVLRAYLMLESKGVIQSRPQSGYFVRLGANDAPPPVQELDVSKPIAVSAQVDVSRLVLSTLRSIGSDEAVPLGSPYPDPSLYPFQKINRYAHVIGRRKTQWGVTDELPPGNPDLIRQIARRYLENGIAIDPNEIVVTVGATEAINLCLQAVAKPGDTVAVESPTFYAMLHAIERMGMRAIEVATHPREGIDLGALAHILDKRKIAACMVMPNFQNPLGFQMPDDKKRELVKLLTRHDVPVIENDVYHELYFGDVHPGALKNYDKKGLVLHCASFSKTLTSAYRIGWAMPGRYREQVEKLKFLNTLTTPSIPQLAIAEYLKQDGYEHHLRKLRKGLAQRAKLMTTMVTRFFPEGTRVSHPMGGYVLWVELPRSVDSMQLYKLALEHGITVGPGYMFSTTNGYSHCIRLNYSYAWSPEIESALMTVGKLAAASMRE
>CP026106.1|AUT71156.1|988070_988379_+|transcriptional-regulator
MNPNDAAHDKHCEDDDDDNELDPTVEQLLMLLWEASRESPGKPWSLAKISKRADLPMSTLRRYFTQLQSAGVIAVQMDEEGRGSASLTGEGLELCEALFGEP
>CP026106.1|AUT71157.1|988433_989588_-|FUSC-family-protein
MRARMFTQIGRDALSALGRELAAWKPTPERALFGVEAVISVVLSVALAHLLHLPYTWWAAISGFAVMQTRFSASAQRALHRVLGTILGGLLGTLLGPIIGDRPWLFVPVLGVIGAICVYRGNGSSASYAWVLGGITWVLVTFEAHKLIAFGPTASFAMMRVAEVCVGTFACLLVSGAFHICISWYERRRPASKVVAAAAATANAPPPTFETLRHARMVLGVQAGIAVAILAALTVTLDLPGFAQALVTTIAVMILPPTSVVVRSQKPVADKMVQRMVGCLIAGAVGIALLPLMQGQIVPSLLALAAGIWAGCHVQTGKQGASYIGRQFTIAFIMVFVQDHAWSADPHAAMLRLAGILTGIAILTCVMLLASRLSFLPASEEATP
>CP026106.1|AUT71158.1|989618_990230_-|LysE-family-translocator
MALSGLLVFALALIVAAGSPGPSIAALVARVLTNGFRDVLPFLAAMWIGEALWLTCAVAGLAVVAHSFALVFIALKFAGVAYLLFLAWKMWFAPTDVHESTLPSGQSPWRMFVAGLMVTLGNPKIMVFYLALLPTIVDLSRVGTLAWLELTLTMLAVLMSVDFIWALAAVKARALLTSRRAVKIANRTSATMMAGAAAAIATR
>CP026106.1|AUT71159.1|990341_990878_+|N-acetyltransferase
MQPPVVHYRPAVPEDVPSIRVVECEAAQRFVSVGLTGIATARPMDAPFVLKKVGASEVIVAQCDGECVGFVMFAMLRARIYVEALDVVPQHAGRRIGAALLDQVDVRARETGATYVELSTFRHVPWNAPYYQRLGFSVLDDDELDAALLRIRNLRIARGVDETKRVFMRRAVKPAGHE
>CP026106.1|AUT71160.1|990950_992012_-|alkene-reductase
MPTLFDPLQIGDLTLKNRIVMAPLTRQRAGDVRVPNALMAKYYAERASAGLIISEATSVTPQGLGYADTPGIWSDEQVAGWKLVTDAVHKEGGKIFLQLWHVGRVSDPVFLNGELPVAPSALAPEGHVSLVRPQRPYVTPRALDISEIPGIVAAYRKGAENAKKAGFDGVQVHGANGYLLDQFLQDSTNKRTDAYGGSIENRARLLLEVTDACIDVWGADRVGMHLAPRGDSHTMGDTDPATTFGYVARELGKRKIAFIAAREALGDDRVGPLLKKEFGGVYIANEKFTKESAQKLLDSGEADAVAWGKLYIANPDLVRRFELDAPLNEPVPATFYAQGEAGYTDYPALETVN
>CP026106.1|AUT71161.1|992088_992418_-|transcriptional-regulator
MSTKPNPKTTDIDIDAIHKALANPARRVILAKLREPGKYFPEQELSYEHGVCAGQFDDCCGLSQSTVSAHLAALQRAGLITSKRVGQWVFFKRNEAVIEAFLARMNTDL
>CP026106.1|AUT71162.1|992872_993151_-|hypothetical-protein
MKRTFIAIVLVVTASTAFAQSTRGVASIAQPANNSLQLPSSHSAGLPAGRWVPPYSGPTPARTPAQVYQQTVHAEVDGQLAHLNSMAAAARH
>CP026106.1|AUT71163.1|993382_993745_-|hypothetical-protein
MTAETTPAPVASVAVPEPAQPSTATPQPSQSVSSQSSVSNSGRDSDKNHRLMALALARAHSGLDKNDLRMARSGIFWALSLQHDNSEALMLKQELLSRERERNTSSTATRGSVNGASPAD

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Crispr_ID: CP026106_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_5

1814689-1814768

Orphan

Consensus_repeat	Method
CACGAAGGCATAACGCGGATGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026106_5

>merge|CP026106|5|1814689-1814768|CRISPRCasFinder
CACGAAGGCATAACGCGGATGCCCGCGAAAACCCCAAAAAAACCAAACCGACCGAGCCACGAAGGCATAACGCTGGATGC

>CP026106|5|4|1814689-1814768|CRISPRCasFinder
CACGAAGGCATAACGCGGATGCC	CGCGAAAACCCCAAAAAAACCAAACCGACCGAGC
CACGAAGGCATAACGCTGGATGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT71800.1\|1821047_1821806_+\|precorrin-2-C(20)-methyltransferase	unknown	unknown	gnl\|CDD\|180341
CP026106.1\|AUT71802.1\|1823691_1824645_+\|flagellar-brake-protein	unknown	unknown	gnl\|CDD\|378995
CP026106.1\|AUT71793.1\|1812470_1813949_+\|sodium:solute-symporter	unknown	unknown	gnl\|CDD\|223664
CP026106.1\|AUT71787.1\|1806202_1806841_+\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP026106.1\|AUT71797.1\|1817373_1818582_-\|bifunctional-cobalt-precorrin-7-(C(5))-methyltransferase/cobalt-precorrin-6B-(C(15))-methyltransferase	unknown	unknown	gnl\|CDD\|225151
CP026106.1\|AUT73095.1\|1802869_1804165_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
CP026106.1\|AUT71791.1\|1811276_1811948_-\|MarC-family-protein	unknown	unknown	gnl\|CDD\|236814
CP026106.1\|AUT71798.1\|1819076_1820429_+\|precorrin-3B-synthase	unknown	unknown	gnl\|CDD\|274131
CP026106.1\|AUT73096.1\|1824750_1825692_-\|flagellar-motor-protein-MotB	unknown	unknown	gnl\|CDD\|236764
CP026106.1\|AUT71799.1\|1820421_1821048_+\|precorrin-8X-methylmutase	unknown	unknown	gnl\|CDD\|181352
CP026106.1\|AUT71786.1\|1805315_1806074_+\|glutathione-S-transferase	unknown	unknown	gnl\|CDD\|379936
CP026106.1\|AUT71801.1\|1821793_1823530_+\|precorrin-3B-C(17)-methyltransferase	unknown	unknown	gnl\|CDD\|381173
CP026106.1\|AUT71792.1\|1812261_1812474_+\|DUF3311-domain-containing-protein	unknown	unknown	gnl\|CDD\|371707
CP026106.1\|AUT71794.1\|1814820_1815543_-\|precorrin-4-C(11)-methyltransferase	unknown	unknown	gnl\|CDD\|225430
CP026106.1\|AUT71790.1\|1810348_1811182_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|238889
CP026106.1\|AUT71796.1\|1816273_1817374_-\|cobalt-precorrin-5B-(C(1))-methyltransferase	unknown	unknown	gnl\|CDD\|234615
CP026106.1\|AUT71788.1\|1806865_1807867_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|273582
CP026106.1\|AUT71785.1\|1800404_1802846_-\|glycoside-hydrolase-family-31-protein	unknown	unknown	gnl\|CDD\|224418
CP026106.1\|AUT71789.1\|1807938_1810257_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236645
CP026106.1\|AUT71795.1\|1815539_1816277_-\|cobalt-precorrin-6A-reductase	unknown	unknown	gnl\|CDD\|236144

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT71800.1\|1821047_1821806_+\|precorrin-2-C(20)-methyltransferase	gnl\|CDD\|180341	PRK05990, PRK05990, precorrin-2 C(20)-methyltransferase; Reviewed.	2.87509e-169
CP026106.1\|AUT71802.1\|1823691_1824645_+\|flagellar-brake-protein	gnl\|CDD\|378995	pfam12945, YcgR_2, Flagellar protein YcgR. This domain is found N terminal to pfam07238. Proteins which contain YcgR domains are known to interact with the flagellar switch-complex proteins FliG and FliM. This interaction results in a reduction of torque generation and induces CCW motor bias. This family contains members not captured by pfam07317.	6.57968e-16
CP026106.1\|AUT71793.1\|1812470_1813949_+\|sodium:solute-symporter	gnl\|CDD\|223664	COG0591, PutP, Na+/proline symporter [Amino acid transport and metabolism / General function prediction only].	1.83097e-69
CP026106.1\|AUT71787.1\|1806202_1806841_+\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.60081e-25
CP026106.1\|AUT71797.1\|1817373_1818582_-\|bifunctional-cobalt-precorrin-7-(C(5))-methyltransferase/cobalt-precorrin-6B-(C(15))-methyltransferase	gnl\|CDD\|225151	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].	1.44497e-74
CP026106.1\|AUT73095.1\|1802869_1804165_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	2.10992e-85
CP026106.1\|AUT71791.1\|1811276_1811948_-\|MarC-family-protein	gnl\|CDD\|236814	PRK10995, PRK10995, MarC family NAAT transporter.	5.11596e-36
CP026106.1\|AUT71798.1\|1819076_1820429_+\|precorrin-3B-synthase	gnl\|CDD\|274131	TIGR02435, Precorrin-3B_synthase, precorrin-3B synthase. An iron-sulfur protein. An oxygen atom from dioxygen is incorporated into the macrocycle at C-20. In the aerobic cobalamin biosythesis pathway, four enzymes are involved in the conversion of precorrin-3A to precorrin-6A. The first of the four steps is carried out by EC 1.14.13.83, precorrin-3B synthase (CobG), yielding precorrin-3B as the product. This is followed by three methylation reactions, which introduce a methyl group at C-17 (CobJ; EC 2.1.1.131), C-11 (CobM; EC 2.1.1.133) and C-1 (CobF; EC 2.1.1.152) of the macrocycle, giving rise to precorrin-4, precorrin-5 and precorrin-6A, respectively. [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin].	4.99265e-98
CP026106.1\|AUT73096.1\|1824750_1825692_-\|flagellar-motor-protein-MotB	gnl\|CDD\|236764	PRK10808, PRK10808, outer membrane protein A; Reviewed.	6.6733e-35
CP026106.1\|AUT71799.1\|1820421_1821048_+\|precorrin-8X-methylmutase	gnl\|CDD\|181352	PRK08285, cobH, precorrin-8X methylmutase; Reviewed.	1.12619e-137
CP026106.1\|AUT71786.1\|1805315_1806074_+\|glutathione-S-transferase	gnl\|CDD\|379936	pfam17172, GST_N_4, Glutathione S-transferase N-terminal domain. This domain is homologous to pfam02798.	3.34266e-31
CP026106.1\|AUT71801.1\|1821793_1823530_+\|precorrin-3B-C(17)-methyltransferase	gnl\|CDD\|381173	cd11646, Precorrin_3B_C17_MT, Precorrin-3B C(17)-methyltransferase (also named CobJ or CbiH). Precorrin-3B C(17)-methyltransferase participates in the pathway toward the biosynthesis of cobalamin (vitamin B12). There are two distinct cobalamin biosynthetic pathways. The aerobic pathway requires oxygen, and cobalt is inserted late in the pathway; the anaerobic pathway does not require oxygen, and cobalt insertion is the first committed step towards cobalamin synthesis. This model includes CobJ of the aerobic pathway and CbiH of the anaerobic pathway, both as stand-alone enzymes and when CobJ or CbiH form part of bifunctional enzymes, such as in Mycobacterium tuberculosis CobIJ where CobJ fuses with a precorrin-2 C(20)-methyltransferase domain, or Bacillus megaterium CbiH60, where CbiH is fused to a nitrite and sulfite reductase-like domain. In the aerobic pathway, once CobG has generated precorrin-3b, CobJ catalyzes the methylation of precorrin-3b at C-17 to form precorrin-4 (the extruded methylated C-20 fragment is left attached as an acyl group at C-1). In the corresponding anaerobic pathway, CbiH carries out this ring contraction, using cobalt-precorrin-3b as a substrate to generate a tetramethylated delta-lactone.	1.62963e-122
CP026106.1\|AUT71792.1\|1812261_1812474_+\|DUF3311-domain-containing-protein	gnl\|CDD\|371707	pfam11755, DUF3311, Protein of unknown function (DUF3311). This is a family of short bacterial proteins of unknown function.	2.62873e-14
CP026106.1\|AUT71794.1\|1814820_1815543_-\|precorrin-4-C(11)-methyltransferase	gnl\|CDD\|225430	COG2875, CobM, Precorrin-4 methylase [Coenzyme metabolism].	7.10852e-127
CP026106.1\|AUT71790.1\|1810348_1811182_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|238889	cd01908, YafJ, Glutamine amidotransferases class-II (Gn-AT)_YafJ-type. YafJ is a glutamine amidotransferase-like protein of unknown function found in prokaryotes, eukaryotes and archaea. YafJ has a conserved structural fold similar to those of other class II glutamine amidotransferases including glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The YafJ fold is also somewhat similar to the Ntn (N-terminal nucleophile) hydrolase fold of the proteasomal alpha and beta subunits.	9.54116e-85
CP026106.1\|AUT71796.1\|1816273_1817374_-\|cobalt-precorrin-5B-(C(1))-methyltransferase	gnl\|CDD\|234615	PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.	1.6509e-164
CP026106.1\|AUT71788.1\|1806865_1807867_-\|glycoside-hydrolase	gnl\|CDD\|273582	TIGR01370, Uncharacterized_protein_DR_0705, extracellular protein. Original assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by but challenged by and by subsequent discovery of the actual mechanism for synthesizing Cys-tRNA in species where a direct Cys--tRNA ligase was not found. Lingering legacy annotations of members of this family probably should be removed. Evidence against the role includes a signal peptide. This family as been renamed "extracellular protein" to facilitate correction. Members of this family occur in Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal). A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases. The function remains unknown. [Unknown function, General].	3.7406e-13
CP026106.1\|AUT71785.1\|1800404_1802846_-\|glycoside-hydrolase-family-31-protein	gnl\|CDD\|224418	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism].	0
CP026106.1\|AUT71789.1\|1807938_1810257_-\|PAS-domain-S-box-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	2.43603e-121
CP026106.1\|AUT71795.1\|1815539_1816277_-\|cobalt-precorrin-6A-reductase	gnl\|CDD\|236144	PRK08057, PRK08057, cobalt-precorrin-6x reductase; Reviewed.	2.69056e-119

>CP026106.1|AUT71793.1|1812470_1813949_+|sodium:solute-symporter
MSSALAIIVAVTLFALYLGVRARHGHDMSLEQWTVGGRSFGTAFVFLLMAGEIYTTFTFLGGSGFAYGKGAPVYYILAYGTLAYVLSYWMLPPVWRFAKTHRVVSQPHFFTRKYDSASLGVLVAVVDVAALIPYLVLQLKGLGIIVSTASYGAISSSAAIWIGAGVVTVYVIVSGVRGSAWNSVVKDMLILGIVLFLGIYLPMHYYGGLGQMFHAIDVARPGFLTFPEKGSSVTWFQSTVLLTALGFFMWPHTFGSVFTAKDERIFRRNAIVLPLYQLILLFVFFVGFAAALKVPGLKGGDIDLSLFKLSLQTFDPWFVGVIGAAGVLTALVPGSMILTTASTLLANDIYRGLVQRNASDETVAKLARVCVPVVAVVAVLFTLHGGETIVALLLMGYSFVTQLFPAVICSLAPRNRATKQGAFCGILVGVAVVAVTTIFKLSVGQLMPFLPDALKDVNIGFVALAVNLVVFVVVSAVTQPQAETDQSRVQTR
>CP026106.1|AUT71792.1|1812261_1812474_+|DUF3311-domain-containing-protein
MSFRLLAVLPFIGILLGVPFVNRVEPLVLGMPFVLAWIVMWVVLSSVIMAIIYRLDPVNRQASSGEEVRS
>CP026106.1|AUT71791.1|1811276_1811948_-|MarC-family-protein
MISSLISEILFGFTGLISIINPIAIAFVFLDRTDSLTDAERAALAKRVSLNAFFVLLVVFFVGTPILHFFGISMEALRIGGGLAVAVSAWNMLNAPERQPNEAAVKPVDPDNAMSKAFFPLTVPLTTGPGTMATAIALNANRSHKLSEFVMSSIASVTISILVMLAVWFTYNHAATLGRYLGKEGTKVALRVSAFLLLCIGVQIILTGLAEFLTPIASGRAGG
>CP026106.1|AUT71790.1|1810348_1811182_-|class-II-glutamine-amidotransferase
MCRWLAYTGNPIQLEAVLFRAKHSLIDQSLHSRLGQTTTNGDGFGVGWYGHPTDIPFRYRCAHPAWSDRNLRDAARAVRASLFVAHIRAATDTPSQETNCHPFRHGRWLFMHNGLVRDYPKVRRDLMLGIDPDLFASIEGSTDSEVMFFLALTFGLEIDPVLALERMAGFVEETGRRHGIEAPLNMTVCATDGEQIVSARYSSERQSRSLYHSTSIRHLMELYPDDPRLAAVGADAFLVLSEPLVDLEGWWQEIPESTAIVAKRGGIEARPFDPHVK
>CP026106.1|AUT71789.1|1807938_1810257_-|PAS-domain-S-box-protein
MSRPVTADIATDKPSESTRHRSDLAAEVLASEQSVLRLLTRSTPLPELLAEVCRRAETLLGEGSRCSILVLDTDGVTVRVGASPSLPAHYSAAIDGMSIGPCAGSCGTAMHDRRLVIVEDIESDPLWADYRHLALPLGLRACWSVPFEDDAGQVLGAFGVYYDRRRRPDEDEHALLHEIGHSVGLAVHQELMRKRLAESEEHHRLVVDHLNEGIVVQTREGIVLACNPSARRMLRATGEVIGQDIYKVIRAAYWEDGSPVESGEQPTQRVLRTGKPVVGMTLRLELTCGESIWITENVVPIVRPGETEPNAVLVSFNDISAVRSARAQLQHLATRDSLTGLYNRAFLADRMSALLAPHAGVEGHEADASQPAVTRLAVLFVDLDGFKKVNDIAGHEAGDALLCSVAARLATCVRSEDTLARVGGDEFVIATGDYGDESFLTSLAQRVLDTIAMPFAVGGNEYYLGASIGISLFPNDGRDAQTLMRNADSAMYNAKQRGRNNFQFFTAELSERLQRRFAIEQSLRRALVADELSLAYQPIVEGATGRIVGAEALLRWHNGELGHVSPAEFIPVAEDTGLIIDIGRWVLENACLQAVEWRRTITPHLMMAVNLSPRQINGELIEHVALSLERAGLAASALELEITEGVLMSDSDTVMPLLTTLARMGVRISVDDFGTGYSSLSYLKRFPLHSLKVDRSFVAGLPEHRDAVAITHAVVAMAHSLGMNVTAEGVETSEQAAFLRSIGCERQQGYLFGRPVVPGEFAREAQRLQAGN
>CP026106.1|AUT71788.1|1806865_1807867_-|glycoside-hydrolase
MDGELKCAFDGAQRFCAGLVAALTLALSLAGASVAAPPSQSADQPIDLVQTRAFDASPWMSYYGDAAALGSMTRAASTFRVIDVDLDPDADNFTPAEVAALKNDGGNIVLSYLNLGSCETYRSYWRDVPEGFVSCKANKAAHAGTYRGYRQETWMNLSNADYQRLIVDYVAPRLVAQGADGFYLDNLEIVEHGTATRNGPCDAACAQGGLDLVRKLREKYPALVFVMQNATGRTTREGMTGGIAFASLLDGVAHEEVYAPKYDAAAEAELGAWKALALRPNGHAFWIATLDYVGGCDAAAKARRVFARSRAKGFVPYASDSSAKQGVVCYWEK
>CP026106.1|AUT71787.1|1806202_1806841_+|LysE-family-translocator
MTSLPILSANVLFAYSAYFVGTASPGPSNLAIMSIASTDGRKAAFAFAAGVVCGSCFWAMLAALGLSAALLAFSGAMVGLKIFGGCYLLWLAFKSGRAALQPRAARTQAAGTHLPLRRIYARGLLLHLTNPKAILVWISVVALASPANGGAPHMLTIVAGCLAIGMLVFGSYAALFSTPLARRVYLSIRRWLDGGLAIVFGLAGLKLLTSRA
>CP026106.1|AUT71786.1|1805315_1806074_+|glutathione-S-transferase
MIVYKFGDGSGAMPPDLSPFVVKLETWLRLSGIPYEGRIGNLNAMPKKKLPVAEIDGVTICDSSAIIAYLQRRYPNALNDARLDPQQRAQSAAIKALFETHLYFVTVYFRWAVERNMGIYKPILTEYARLTAPPSVRSLVGALAPLLMPVIRRKVLRQAWEQGTGRHSYDEVAQMGIEGWQAVADLLGDQRFLLGDEPTTIDATGFAWVHTTVAHPFESPVRDFVSRHPALMAYHERIAERCWPDLTRAARR
>CP026106.1|AUT73095.1|1802869_1804165_-|MFS-transporter
MRTIIGLRWWIIALVCLGTIVNYLSRNALGVMAPELKTLLHMNTQQYSYVVGAFQIGYTIMQPVCGLIIDLIGLRLGFALFACLWSATGMLHGLASGWLSLAAMRGLMGLSEAVAIPAGMKVVAEWFPNREKSVAVGYFNAGTSLGSLFAPPLVVFLSLRYGWQSAFAVTGALGFVWAALWYVFYRAPADHRRISEKERTAIVEGQTPPAAQGQDKRRIREVLGTRRFWAIAQARFFAEPAWQTFSFWIPLYLATERHMDLKQIAMFAWLPFLAADLGGLFGGYLSPFLMKRLRVPLIWSRIAGVVLGAFMMIGPACIGLVASPYEAIALFCVGGFAHQMISALVNTLAADVFEPGEVGTAAGFAGMAAWIGGLGFSLMVGALADKIGYTPLFGALGAFDLIGATLLVILMRGVSRDARLQRVENGAGSAA
>CP026106.1|AUT71785.1|1800404_1802846_-|glycoside-hydrolase-family-31-protein
MATLKNRPRFSVSEPLSEPTAGQPGNPIVLSDASGARIELFVLSDDIIRVLVLPTGELRGPRTWSIAPGLEDVPLDGRDRRDTSGFGETVFSATSDAGRLVVETAQVRLTVALDGGFCSWAIARDGAWHDVMNDRKTQAYNFGWWDERVYHYVERQRGEMYVGLGERAGTLDRANQSYEMRNIDAMGYSARSTDPLYKHIPFYVTWQPQTSMGFGLFYDTLADCRFDMGRELDNYHGHYRHFVAEHGDLDYYFIASADTPLHAVRRFTWLTGRPALMPKWGLGYSGSTMSYTDAPDAQHRMGEFIERCREHDVLCDSFHLSSGYTSIGAKRYVFNWNHEKFPDIEGFVHGYLREGVKLCANIKPCLLQDHPAFDEAAKAGLLIESRDGEPAWVQFWDEVGAYLDFTNPATIDWWKARVKDSLLRYGIASTWNDNNEFEIWTPDAIAQGFGEPFPAHQAKVLQTQLMMRASRDAQREHAPRTRPFLVSRSGGVGMHRYVQTWSGDNYTSWETLRYNLKMGLGLAMSGVSNSGHDIGGFSGPAPEPELLLRWVAFGIFLPRFSIHSWNDDGTVNEPWMYPEATAQIAGLIKLRYRLIPYLYELLWQSHRSYEPVLRPLFAEFPNDPRCLADGDNMMLGSSLLVAPVVEQGQSEREVYLPDGARWASYWSGEVFEGGQSVTLPAPFEQPVMLLREGSVVPLNVAEQHFAQPADERAFIALPFEGAGTAQGGCVEDDGETEAWRDGVQGRWNVAIASDATTLRIAIDREGQMPFEQHDVQLSVPSSETRAAICTNGEVTSDEVVNGWRRLTLRLAHP
>CP026106.1|AUT71794.1|1814820_1815543_-|precorrin-4-C(11)-methyltransferase
MTVFFIGAGPGDPELITVKGQRLVRTCPVILYAGSLVPEAVLSGNVAEKVVNTAELDLDGIVGLLADAHAKGQDVARVHSGDPSLYGAIGEQIRRLRALGIPYEIVPGVTATAACAAALGVELTLPDVSQTLILTRYARKTSMPEGEQLADLARHRASMAIHLGVRHIASIVDELTPHYGGDCPVAVVYRASWPDEEKVVGTLADIVERLQGMDIQRTALILVGRVLDAEHFADSTLYSK
>CP026106.1|AUT71795.1|1815539_1816277_-|cobalt-precorrin-6A-reductase
MKRVLLLGGTGDALQIARQVGPRHIYSLAGLGRVPEGLACEVRVGGFGGSDGLARFIESEGIALVIDATHPYAAQMSANAAAACREAKVPCWALRRAGWTPQAGDDWRMVDGWDQLVDAIRPFRRVLFTSGREPLAHLDEIPVHQYWIVRCLDAHPGNGRAHIIDARGPFDIDGERALFALNHIDVLVTKNSGGAATQPKLEVARELKVPVVMMRRPSLPEVDREFDSPAQLLRALNEEDWSAVK
>CP026106.1|AUT71796.1|1816273_1817374_-|cobalt-precorrin-5B-(C(1))-methyltransferase
MRDETPEQPAPLRSGYTTGSCATATSLAAARLLLSGIASDVAEIVLPKGQHVPMQLVFCRLIDGGKDGAEAGTVKDAGDDPDVTHGAVVFARVRLADEPGVRFHAGPGVGTVTRAGLTLPVGEPAINPVPRQMMTAHLAELAAEHGYAGGFEVTIGVENGEALAQKTMNPRLGIVGGLSILGTTGIVRPFSCSAYIASIHQGIDVARANGYRHIAACTGNASEDAMRAYYRLPDIALIEMGDFAGAVLKHLKRAPVDKLSMCGGFGKLSKLAAGHLDLHSRNSSIDLPQLAAWSAGHAASDAALQAAIVGANTSQEALAMAREKGVPLGDIVCALARDVARDIVPASVEVEMFAIDRQGNIIGVAR
>CP026106.1|AUT71797.1|1817373_1818582_-|bifunctional-cobalt-precorrin-7-(C(5))-methyltransferase/cobalt-precorrin-6B-(C(15))-methyltransferase
MSAWLTVVGMGDDGFAGLGKTARRALIDASVIYGGERHLAMLPVCLSAAREPWPHPFDIAPVLARRDTPVCVLASGDPMFYGVGATLARYVAADQLRVLPAPSSVSLAAARLGWALQDVATVSLVGRPLAALQMHLHDGARVFVLSADGATPAAVAAWLVERGFGATRMIVMEHLGSASERLIDARAHDWSIAETASLNVIALDCRRDASSDAPRLALTPGLPDDAYRHDGQLTKRDVRALTLGRLAPAPGELLWDVGAGCGSIGIEWMRAHASCRAIAIEANGERQRFIEHNRDALGVPGLQLIAGKAPDALQGLPAPDAIFIGGGVTAHGVLDACWRALKQGGRLIANAVTLEGEAALVAWRAQHGGTLTRIALAEAQALGGFETWRSALPITLLDTRKP
>CP026106.1|AUT71798.1|1819076_1820429_+|precorrin-3B-synthase
MRPSACPGLLRIVPALDGGICRVKLAGGELSATQALAIAGAIDEHASGIVDITNRANLQLRGVKRGHEDALVAALLDAGLGPQNIEHAFADDVRNVMISPATGRDANALFDTTTLAGDLLTLLQSDTRFAALSPKFSLMLDGGERLMMLDHPHDIWFSAMPHPARSVVLFAFGLAGCPPVAAEHESALATVTASDLATFTRALVHTFLDLAAPDDTRMRDLLTAHSIESIIKHAERKSGVQALRDASIERWRREPADASRRLGAHRQNDGQRWHVGAQPALGRINSATLRGLAELARGNERATLRMTPWQSVILTDIDTANLDATLQTLEALGLATTADNPLTRVIACTGSTGCAKSHADTKADALKLAAHVPEHTQVHLSGCPRSCAAAHRAPYTLLAVADGRYDLYQTHDPRDANGFGRCIARGLTIDEAAEVLQASALPPTDEPFDA
>CP026106.1|AUT71799.1|1820421_1821048_+|precorrin-8X-methylmutase
MLDYIRDGQEIYRQSFATIRAEADLTRIPADLEKLAVRVIHACGMVDIVGDLRFSEGAGRAGRQALANGAPILCDARMVAEGITRARLPAHNEVICTLADPSVPALAREMNNTRSAAALELWRPHLPGSVVVIGNAPTSLFHLLDMLDSGAPRPALILGFPVGFIGAAESKAMLAANSRGVPFVAVQGRRGGSAMAAAAVNALASEDE
>CP026106.1|AUT71800.1|1821047_1821806_+|precorrin-2-C(20)-methyltransferase
MADQANSTRGRLYGLGVGPGDPELITVKALRLLKSAHVVAYFVAKGKKGNAFSIIESHLSSEQEQLPLVYPVTTEALEPPLSYEAIIADFYDTAAEVVAKHLDAGRDVAVICEGDPFFYGSYMYLHDRLANRLAPRFEGEVVPGVCSMLGGVAVLGQPLVYRNQTLSVLSGVLPEDELKRRLAAADAAVVMKLGRNFDKVRRVLDELGLAERALYVERATMANQRIVPLAEVDPMASPYFSLLVVPGEKWQG
>CP026106.1|AUT71801.1|1821793_1823530_+|precorrin-3B-C(17)-methyltransferase
MARLTTPPAIVILGVGAQDTARRVQSLYDGAQVHGLQGRVADADVAYTELNAHLRALYASGTPIIALCAAGIVIRCIAPLLADKGVEPPVLAVAEDGSAVVPLLGGLSGVNVMAREIAAALDVPPAITTSGELRFGACVLNPPDGYTLASIDQGKRFVSDLLAGEATRIEGDAPWLDSVQLPRADDARRAIRVTPLAWNGATDELVIHPRNVVVAVHATGPDAGSLPQRILEAAQTHGLAAQSLAVLLAPASLTGDPALQQAADALQVALRFAVGSGEDNDTAEMLRQTLRVPHKALDANADAPIAFAVTHAPLDPATVGRARGKLSVVGLGPGDASLMVPAARTALTQATDILGYETYVKMAGPFRADQRVHGTDNREEMQRARHAFELASTGRHVAMVSSGDPGVFAMAAAVLEALDEVGEDGRYAAWAGVELEIVPGVSAALATAAQAGAPLGHDFCMLSLSDNLKPWSIIEKRLRHAAEADLVMAFYNPISRARPWQLDKALDIVRECRAPSTTVVLGRDIGRPGATLKTTTLAELKSADVDMRTMVIIGSSTTRVFRPARRGREWVYTPRWYE
>CP026106.1|AUT71802.1|1823691_1824645_+|flagellar-brake-protein
MQTSEDTVDIDASAPVTAARQLSPDAVPVGTPLEFPIIDSDGALLFDRGAIVIGADEHRFLFQHFKPQRGDLDTAYDDGTPAAQAAAKPGDAEALALKDMHLTIGALIGVRSQVGMGAPMHPSRIIGFAPNESLFVTPPLVDGKPMALSVGENVEIVAIASQAVFRFVCTVDSVCQVPFHYLVLSKPGVVRRLRERKSVRVRASLPLRFSVEAQGTGYESLGLVQSVSALGMSFSAAWTVGEIGKRIRVAFTLRSKDMETPIETTAIIRNVQPGSKPGDPATHGIEFDQLNQVEQMALKVYVFDRIDDVIFWTSGPK
>CP026106.1|AUT73096.1|1824750_1825692_-|flagellar-motor-protein-MotB
MLVSRVHNNAAQRALGNARYLIDQSVPWEPLYTAKNWPTRDKWVQAIRAIEATNARVSASTCKGESAGRLLALTDEVWKEQDETHGTRWVHGWEAIERAQQLSVQVNQELDHCAPPPPPPPPPVVEAATPISLSADALFDFDSAKLKADGTTAIDALATDLKRAQSIDVVTVIGYTDRFGSVAHNRDLSRRRAQAVADALKERGLNPARFDVRGAGSTAPIATCPGRKSAAVIACLAPNRRVEIRVSGQSVSAVPTAPAAPAAPAAPQSPRPQQMKQEQAQPQAQQLQLQQLQQPPQRQQWQMPQSLQKPPAQ

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Crispr_ID: CP026106_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_6

3071287-3071368

Orphan

Consensus_repeat	Method
GTCGATGGGAGTTAGCGCTTCAGCGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026106_6

>merge|CP026106|6|3071287-3071368|CRISPRCasFinder
GTCGATGGGAGTTAGCGCTTCAGCGCTTACTCCCATCCCATGCACGTCAAGTGCGGTCGATGGGAGTTAGCGCTTTAGCGCT

>CP026106|6|5|3071287-3071368|CRISPRCasFinder
GTCGATGGGAGTTAGCGCTTCAGCGCT	TACTCCCATCCCATGCACGTCAAGTGCG
GTCGATGGGAGTTAGCGCTTTAGCGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT72780.1\|3063215_3063959_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187626
CP026106.1\|AUT72781.1\|3064047_3064878_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|226145
CP026106.1\|AUT72782.1\|3067324_3067642_-\|hydrolase	unknown	unknown	gnl\|CDD\|212158
CP026106.1\|AUT73229.1\|3070214_3071222_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380478
CP026106.1\|AUT72785.1\|3071652_3072453_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP026106.1\|AUT73231.1\|3083604_3084336_-\|molecular-chaperone-EcpD	unknown	unknown	gnl\|CDD\|236634
CP026106.1\|AUT73227.1\|3064894_3065935_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381387
CP026106.1\|AUT72784.1\|3068667_3070194_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
CP026106.1\|AUT73228.1\|3065988_3067269_-\|hydrolase	unknown	unknown	gnl\|CDD\|377287
CP026106.1\|AUT72788.1\|3077726_3079328_-\|peptide-chain-release-factor-3	unknown	unknown	gnl\|CDD\|179105
CP026106.1\|AUT72791.1\|3084429_3084999_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP026106.1\|AUT72792.1\|3085449_3086505_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069
CP026106.1\|AUT72783.1\|3067643_3068678_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321
CP026106.1\|AUT72779.1\|3062292_3063141_-\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP026106.1\|AUT72786.1\|3073448_3073991_+\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT73230.1\|3073999_3076426_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|131764
CP026106.1\|AUT72790.1\|3080762_3083372_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|225729
CP026106.1\|AUT73226.1\|3060949_3061405_+\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
CP026106.1\|AUT72787.1\|3076766_3077636_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
CP026106.1\|AUT72789.1\|3079530_3080592_-\|type-1-fimbrial-protein	unknown	unknown	gnl\|CDD\|226069

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT72780.1\|3063215_3063959_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187626	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs. Human DHRS6, and similar proteins. These proteins are classical SDRs, with a canonical active site tetrad and a close match to the typical Gly-rich NAD-binding motif. Human DHRS6 is a cytosolic type 2 (R)-hydroxybutyrate dehydrogenase, which catalyses the conversion of (R)-hydroxybutyrate to acetoacetate. Also included in this subgroup is Escherichia coli UcpA (upstream cys P). Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction. Note: removed : needed to make this chiodl smaller when drew final trees: rmeoved text form description: Other proteins in this subgroup include Thermoplasma acidophilum aldohexose dehydrogenase, which has high dehydrogenase activity against D-mannose, Bacillus subtilis BacC involved in the biosynthesis of the dipeptide bacilysin and its antibiotic moiety anticapsin, Sphingomonas paucimobilis strain B90 LinC, involved in the degradation of hexachlorocyclohexane isomers...... P).	3.97094e-119
CP026106.1\|AUT72781.1\|3064047_3064878_-\|amidohydrolase	gnl\|CDD\|226145	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only].	1.08943e-65
CP026106.1\|AUT72782.1\|3067324_3067642_-\|hydrolase	gnl\|CDD\|212158	cd11613, SAF_AH_GD, Domains similar to fish antifreeze type III protein. Altronate dehydratase (EC 4.2.1.7) converts D-altronate into 2-dehydro-3-deoxy-D-gluconate and is part of a bacterial pathway for the degradation of D-galacturonate. D-galactarate dehydratase (EC 4.2.1.42) eliminates water from D-galactarate to yield 5-dehydro-4-deoxy-D-glucarate, initializing the degradation of D-galactarate. The function of the SAF domain in these enzymes is not clear. It may participate in dimerization.	1.03309e-27
CP026106.1\|AUT73229.1\|3070214_3071222_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380478	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2) receptors such as LsrB and LuxP which are highly homologous to periplasmic pentose/hexose sugar-binding proteins.	2.14917e-53
CP026106.1\|AUT72785.1\|3071652_3072453_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	9.64803e-46
CP026106.1\|AUT73231.1\|3083604_3084336_-\|molecular-chaperone-EcpD	gnl\|CDD\|236634	PRK09926, PRK09926, fimbrial chaperone.	4.38142e-93
CP026106.1\|AUT73227.1\|3064894_3065935_-\|aldo/keto-reductase	gnl\|CDD\|381387	cd19161, AKR_AKR15A1, Microbacterium luteolum pyridoxal 4-dehydrogenase (PLD) and similar proteins. Microbacterium luteolum PLD (EC1.1.1.107) is a founding member of aldo-keto reductase family 15 member A1 (AKR15A1). It catalyzes irreversible oxidation of pyridoxal.	5.13019e-165
CP026106.1\|AUT72784.1\|3068667_3070194_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.67349e-168
CP026106.1\|AUT73228.1\|3065988_3067269_-\|hydrolase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.22242e-151
CP026106.1\|AUT72788.1\|3077726_3079328_-\|peptide-chain-release-factor-3	gnl\|CDD\|179105	PRK00741, prfC, peptide chain release factor 3; Provisional.	0
CP026106.1\|AUT72791.1\|3084429_3084999_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.03937e-16
CP026106.1\|AUT72792.1\|3085449_3086505_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	5.13319e-10
CP026106.1\|AUT72783.1\|3067643_3068678_-\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	3.26711e-66
CP026106.1\|AUT72779.1\|3062292_3063141_-\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	9.4191e-102
CP026106.1\|AUT73230.1\|3073999_3076426_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|131764	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.	1.86036e-93
CP026106.1\|AUT72790.1\|3080762_3083372_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|225729	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion].	0
CP026106.1\|AUT73226.1\|3060949_3061405_+\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	2.87242e-27
CP026106.1\|AUT72787.1\|3076766_3077636_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.24397e-68
CP026106.1\|AUT72789.1\|3079530_3080592_-\|type-1-fimbrial-protein	gnl\|CDD\|226069	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion].	1.39878e-10

>CP026106.1|AUT73229.1|3070214_3071222_-|sugar-ABC-transporter-substrate-binding-protein
MTAAVAATCIAGIAGITFSTAAQAADTGKVGLGLPLLTSPFWQSYNNYLPKYAKEMGIDILAPVNSNNDPAQQITDMNNMVNLGAKGIVVGPIDSAAISRALDSASAKNVAVVAVDVAPTQGKVAMVVRADNRAYGTNACKYIGEHVKSGKVVQIMGDLASVNGRDRSEAFRACLKNYPALSLLEIPAGWKGDVAASSLDSLLTANSDVKAIYMQAGGVYLSPTLQTLRRKQMLFPAGDAKHVVIVSNDGIPQEFDAIRKGEIDATISQPADLYAKYGLYYMKAALAGQTFKPGPTDHGSNIVQLQPGVLEDQLPAPLVTKANVDDKNLWGNTLK
>CP026106.1|AUT72784.1|3068667_3070194_-|sugar-ABC-transporter-ATP-binding-protein
MTHDANASTRAVVEALGVGKRFGSHAALRDVSMRVLPGESHALVGRNGAGKSTLVSILTGLRKSDTGEVRFGGELAPPIADRDAWRERVACVYQHSTIIRELSVAENLFINRQQTRNGVIDWRAMRRDARALLDHWKIDVREDARAGDLTVEARQLVEIARALSYGARFIILDEPTAQLDGDEIKRLFRRIEELQREGVTFLFISHHLQEVYEICQAVTVLRDARHIVSAPVSALPREQLIEAMTGERGGLNVTDAASRQPLPAATAVALQVEALTGADYEDVTFAVKRGEVVGLTGATSSGRTSVAEAIAGLRKPQRGGIRVDGEALPLGDVPAALKRGIGCVPKDRHHEGLVLTQSVAENASMTIARMLGKFGIAPPAKKNAFGKKMIDALGIATQGPEQAVSGLSGGNQQKVVMARALATDPDVLVLIDPTAGVDVKSKEALLAVVDRVREEGKSVIVASGELDDLRVCDRVLVMFRGRIAAEFPAGWEDNDLIASVEGVSLHEE
>CP026106.1|AUT72783.1|3067643_3068678_-|ABC-transporter-permease
MKNSVPAFASAQSAQGMGSGAARPRIEIARLRDLALVPALALLIVIGAFVSPSFLTKANLISVLGASAALALVVLAESLIVLTGKFDLSLESTVGIAPAVGAMLVMPAASAGFGFEWPAAAGLLAILVVGAVIGFINGFLVVRLRLNAFIVTLAMLIVLRGMLVGATKGGTLFDMPPSFFELATTIVLGLPLSVWLAAVAFGIAAFMLRYHRLGRALYAIGGNPEAARAAGIRVERITWGVFVLGSVLASIGGLVVTGYVGAINANQGNGMIFTVFAAAVIGGISLDGGKGTMLGALSGVLLLGVVQNLLTLAQVPSFWIQAIYGAIILGSLMVARLASGEGQN
>CP026106.1|AUT72782.1|3067324_3067642_-|hydrolase
MTHMTDHRLILLSPEDNCLIAGARLEAGTQIEIEGEHVTLAKTIELGHKVARRALRSEEKVLRYGAVIGHVTTDVARGEHLHTHNLESDYLPTYTHDAGHAFVHH
>CP026106.1|AUT73228.1|3065988_3067269_-|hydrolase
MLPMLQGYPRSDGRKGIRNVVAVAYLVECAHHVAREIVAQFRPSFDAFDDLSAELEAPVHLIGFPGCYPNSYAEKMMEQLTTHPNVGAVLFVSLGCESMNKHYLVDVVRASGRPVHVLTIQEKGGTRSTIQYGVDWVREARSELAKQKKVPMALSELVIGTICGGSDGTSGITANPAVGRAFDHFIEHDATCIFEETGELVGCEFHMKSRAARDDLGDEIVACVAKAARYYSILGHGSFAVGNADGGLTTQEEKSLGAYAKSGASPIVGIVKPGDVPPTGGLYLLDVVPDGEPRFGFPNISDNAEIAELIACGAHVILFTTGRGSVVGSAISPVIKVCANPNTYRNLSGDMDVDAGRILEGRATLDEVGREVFDVTLAVAQGAASKSESLGHQEFILTYKTFEPVGPACLPSNAALPHRVVSVAAQ
>CP026106.1|AUT73227.1|3064894_3065935_-|aldo/keto-reductase
MTDAAGSNVRKRRRIGGRALEVTGLGLGTAPLGGLYRDLSDEEAFGAVQAAWDAGVRFFDTAPHYGHTKAEHRLGDALRRYPRNEFVLSTKVGRHFVPRKHPYDGSEGWQNPLPFEAIYDYTHDGILRSFEDSQQRMGIVDIDILLIHDIGVVTHGERNAHYWQQLTQGGGFRALDDLRSQGAVKAVGLGVNEGAAILDVMREFDIDCALLAGRYTLLEQATLNDLLPECEKRNVSILLGGAFNSGILARGVEGDLKFNYGEAPKEVIERVARLEAVCKVHGVPLAAAALQFPYAHPAIATVLTGARNAGELRENVASFDKPIPAELWQALRGKGLLDPRAPVPKD
>CP026106.1|AUT72781.1|3064047_3064878_-|amidohydrolase
MQIDAHQHYWNPERGDYGWLTPDLALLYRTFGPDDLAPLRERAGVSRTVVVQAAQTVDETRYLLDLARNEASIAGVVGWVPMLDANAPALIAELARDPKFKGVRPMLQDLPDDNWIANPALKPAVDALIGHDLAFDALIFTRHVDALETFIKRFPQLRVVIDHGAKPPIRDGSAGWHAWAEGITRLAQLPHVHCKLSGLATEAARGWTEATLRPYVDHLLAAFGPNRLMWGSDWPVLNLNGDYLLWHSIATELLASLSDAERDAVFGGNAAAFYRL
>CP026106.1|AUT72780.1|3063215_3063959_-|SDR-family-NAD(P)-dependent-oxidoreductase
MVQRLAGKTALITAAGQGIGLATAELFAREGARVIATDIRIDALKDKPVEARQLDVLDGAAIKALAQELGPIDVLFNCAGYVHAGSILEASEEDWDFAFDLNAKAMYRMIRAFLPAMLEKGGGSIINMSSAASSIKGVPNRFVYGASKAAVIGLTKAIAADFVTRGVRCNAICPGTVHSPSLEQRIAEQAKAQGATVEAVHAAFVARQPMGRVGKPEEIAALALYLASDESGFTTGQAHVIDGGWSN
>CP026106.1|AUT72779.1|3062292_3063141_-|FAA-hydrolase-family-protein
MKLLRYGPKGQEKPGLLDAQGKIRDLSKVVGDIDGSTLTDAALGELRAIDPATLPVVEGNPRIGPCVGKIGKFVCIGLNYADHAAESNLPVPSEPVVFNKWTSAIVGPNDGIEIPRGSKKTDWEVELGVVIGKEAKYVDEANALDYVAGYCVINDVSEREWQIERAGQWDKGKGFDTFGPIGPWVVTRDEVADPQNLKLWLEVDGHRYQNGSTKTMVFGVAKLVSYLSQCMSLQPGDVISTGTPPGVGMGVKPEAVYLKPGQTVKLGIEGLGEQQQKTYAAE
>CP026106.1|AUT73226.1|3060949_3061405_+|PaaI-family-thioesterase
MTDLLDRARGALHAQPFSVLLGTELMYVGANELTLCLPIRDELRQQHGFVHGGVISYLADNALTFAGALALGPRVVTGEYKINYLRPAMTGVLMARAEVVYVGRQQATCQCSVFVTDGDKDRLVAVAQGTINRIGDGTEAGGPYEERRLHE
>CP026106.1|AUT72785.1|3071652_3072453_+|IclR-family-transcriptional-regulator
MDVEDKDDADRYRAPALDKGLDILELLAEQKSGLTRAEITKLLGRNASEMYRMLERLVARQYVVRSAGGDRYSLSLKLYALAHRHPPMNRLISEALPLMQRFAADAEQSCHLAVYDRGNLLVIAQVDGPGTWGISVRLGSRVGLIDTSSGRTMLAFQTPEQREHMLAEHTKVKGEVTIDHGALEGACETIRAAGFSQKDSQQIFGVTDLTFPVLTASGQAIAAMTCPFLKRIDEYVAPSLDQVTQMLREIVQGLSMFAEPEVRSGS
>CP026106.1|AUT72786.1|3073448_3073991_+|hypothetical-protein
MAKLLSDLEFQRFSELQQKQTSFIITSEEADELREIVSRAQQKRDDRSAAMKQIETFITQFDISPDELFSADQIGDAARNFGLIPAAKKERMLPPTVTFNGKPYQWTRALPDEVRVPLFEAFTAGQSVKLFIATPKDAVRCAATIARLERETGATYAPEWLEELSVSREQVDAAAMKLAA
>CP026106.1|AUT73230.1|3073999_3076426_-|GNAT-family-N-acetyltransferase
MTVRNLDALFRPKSIAVIGASKREGSTGAMVWKRLIEGGFDGPVWAVNPKYDMLDGHACVGNAGDLPDAPTVAIVCTPPSTWPAIVHALGGRGTRAAIIVGEARCDDDRADVRHTLAAARPHLLRIVGPGSLGVITPALKAHLGAPSVTVRSGGVAWVSQSNALTNAVLGWAHARGLGFSHAVALGDEADVDAGDVLDYLASDPGTRAILLEVDSVKSARKFMSAARAASRNKPVLALRSGRSDPNDALYTAAFRRAGVVRVDALDDLLDEIETLGVGRVAAGATATLITSDRGVATLATDAFKAAGDTLAPCPPGAVDALAQALPRAVPGNPLLLGSDARAEHFGTALKVLADQRSTGTAFVVHASTHGAPVEEVAQALIANQRYAYRGLLACFFGGLKRETRDALHEHGIPVHTTPQRLARAFERLVEYRLVRELLMQTPEGQAARVPEAIDAAQAQACAALSSGVTLLEGDDAARLLAHFGVRTVPEEARDGAVVDITVELRDDANFGPVFRFTAPPEHDEARPMCVFGLPPLNPVLSDDILSNSAYSREVAPEPVLTTLTSISQAVSEIREIVSLKLALRVMRNGAAVVAPRLWLSANRTRFAIMPYPRRYEETLDWRGQRITVRPIRPEDEAAHRDFVESMTPDDLRLRFFGAVGSFDHSQLARMTQIDYDREMALIATTQNEDGSTHTLGVVRAVADPDNETAEFAMAVRSDQKGKGLGRLLMERIIAYSRSRGTHWIIGEALRENSAMIGLATAVGFTTTRTEDPGVVGFRMALDQPDERGAVGFGASPACSASASTNTRS
>CP026106.1|AUT72787.1|3076766_3077636_+|LysR-family-transcriptional-regulator
MRRLPSLIALRFFEETARHLSFNRAAVALCVTQGAVSRQIKILEESLGAKLFERDHKGIRLTKAGQQLLPCVSEAFDTLERGTRQVTTAKGRRRLVLSVPPTFATQWFSPRLGSLAVELPDVELSVRTEPTDDCHCNIRFGRAALADAHSELLMIERHTLVGAPRLGGEPLDKLLETLPALHVLHNDARLNLWPDWLDKAGLPARHAENGIEFSTLEQAIHAARKGVGLAIVDRNMIIEELGEGSLAPMSDIEVSGPYGYWLDIAERHATLEHVQAFASWMREQVLAMS
>CP026106.1|AUT72788.1|3077726_3079328_-|peptide-chain-release-factor-3
MSVSELKRRRTFAVISHPDAGKTTLTEKLLLFSGAIQIAGTVKGRKSNRYATSDWMEIEKQRGISVASSVMQFEYGNCVINLLDTPGHEDFSEDTYRVLTAVDAAVMVIDGANGVEAQTLKLLEVCRSRKTPIVTFINKLDREVREPLDLLDEIEQHLGVSAVPFTWPIGMGKDFQGVYDIQNDQVRVFRAGQDTLGGEVETIHSLGDEEGERRFGHAWVRAKEEIDLITGATPSFDRDEFLAGQQSPVLFGSAINNFGVKEILDALVDLAPPPSARQTVQRPVLPEEPKFTGVVFKVQANMDLAHRDRVAFIRVCSGRFERGMALKVTRNNKTFRANNVVTFLSQRRETVSEAYAGDIIGIPNHGTLSLGDTLTEGELLQFVGLPFFAPEIFQTVEVVDPMRSKQLGEALKQLGEEGAIQVFKPVMGGLTILGAVGQLQFEVVSHRLSTEYKVDVRMAPARYRMSRWVTCDDAAELRRFCDSYAQRIAYDAADAPTYLASHVSEIEVAQKAWPKIVFNELREHSGAPFRKAM
>CP026106.1|AUT72789.1|3079530_3080592_-|type-1-fimbrial-protein
MKPNTILVVLKLRLHSVLMLGAFIVLFAAGSQAYAGTISCNVTGQTSNPPAVGAASFGRDAPIGSTTPAYSNTLSFHCPGDPCCDRDIYLYFNAAPTALVAGYSDVYPTNLSGIGVRFTVSNGPSTTCNSLPLTVPNGYRQVVCHQIWASATPGYDFNVTISAQFVKTGAVAPGTLTTIPALSITNAINNQSGTFPWGNAFTGTASGNFSSIACSVTQSAVQVTMPQANTRDLASVGATTGSTPFSLSLNCDPGVRVAVTLSDLTTPSNRSNTLSLTADSTAKGIAYQLSYAGTPILYGPDSSAAGTTNQISVSSSPTTGGVYSVPLKASYIRTGTMNPGTANAKATFTMSYQ
>CP026106.1|AUT72790.1|3080762_3083372_-|fimbrial-biogenesis-outer-membrane-usher-protein
MKPSRQRQSQRPASATAGSFMLNPVTAVVLSVFTMAGFMSAGAACAAEAVEFDTTFLQIDSQRVDVARLGRGNIVAPGAYTVDISINDNHVARESVRFTAAHEGENARACLTRKMLEAYGVDFTKLTNAADQGADACVDVSASVPDATVEFDFNEQKLNITIPQKYMRNLARGYVAPELWDNGVNAGFLSYNANAYRTASGGTQASQEYLGLNAGVNIGAWHFRHQSSVTAGTGQSIQLDNIATYVQHDVTKLRSQVTLGDAQTTGDVFDSIGFRGAQIATDDRMLPESLRGYAPVVRGTADSNARVTVRQNGQVIYETNVSPGPFEIGDLYATGYGGNLDITVTEADGRTKHFSVPYAAVAQSLRPGTTRFAFTAGQLRDESLQTKPGFTQFTVQRGLTNLVTLYGGAVASNGYVAANLGAAFNTKYGALASDLTTARTQLPGVGAQQGQSLHIGYSKFIDATNTNIALGAYRYSDSGYLGLADAARLRDAALHGSDVNAADRERGRLQLTVNQTLKDRGAVFANVSSQHYWNRPGRDMFYQLGYSNGFKYGTYSVTAGRTRSADGTLSNEVMLSTSIPLGHTQHSPMLSTNLNAGKDASSMQTSLGGAAGERNQYSYNVYDTVEQAASGGVNASAGASGTWRAPVAQVTASASGGAHSAQVSAGVSGSVVAHPGGVTFSQTVGDTFGIVEAKGAEGATVSSASGVKVDSHGYAVVPFLAAYGMNTVDIDPKGSSSDVEFVSTSERAVPRLGSVVMLKYKTVTGRAALIRAPQMGGAPLPFGADVLDANGSHVGVVAQDSRIFARGIEDKGTLVVKLGENEGDICRIQYALPVKGDKADAYTSVEGHCVTGSSIAPVAVVPAAGASAG
>CP026106.1|AUT73231.1|3083604_3084336_-|molecular-chaperone-EcpD
MGRLLAGVGVACALFAGVAQASVTIGGTRVVYPLDQREVTVKLNNDSRAPSLVQVWMDDGNVDTKPGDSKAPFVITPPIFRMDAGKSQTLRVMYSGDALPQDRESVYWLNVLDVPPKADAKADANTLQFAYRTRIKVFVRPPKLQGTPDEAPRQLDWKVVPAPEGKGQALAVSNPTAYHVSFSEIRVSSNGATYKNDRGGMVAPRGKEIIAVPQMNGVKSGKVHYVAINDFGGAIEGDADIAP
>CP026106.1|AUT72791.1|3084429_3084999_-|type-1-fimbrial-protein
MQKRIIPAVVIVAMGIVSLQSMKAHAADGTITINGAVSDTTCSINGVAAGSPADVSVTLPTVPAGALSSAGATAGTSNLGDIQLSLSGCSGTATKAVARFENGPNVDQSSGYLLNKASASPAQNVEVRLMNAKMQPINILTNANNDAATNGAVISGGAAMLNYFAQYYATGKAQPGSVTTSVQYTMQYQ
>CP026106.1|AUT72792.1|3085449_3086505_-|type-1-fimbrial-protein
MNMTAMSRGNGRWFGRLLQLAMLVSVMLAAPAANAQIVNCYALTNGGYAPAVGTNPFPRDAPTGSTSSSFSTTVGFQCDGYPRADRDIFITFTINPSGLVPGFRDVYPTNIGGVGVRYTVSNGAGTSCRGMPATISGSLKVTCHQPPSPKSRRINYHLDVAAQFVKTGPFNSGALATIPSVTANLTRNNQSGTVALGTYFTGASGSFINTACSVRQPAIQVPMPVATRRQLGSVGATSGATPFAIALDCDPGVRVAMTMTDATTPSNRSCTLSLAPDSTARGVGYQIIFGGQTICFGPDSPTAGTTNQFVASDTPTSGGPLSVPFQVRYVRTGDLNAGSANALATFTMSYQ

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Crispr_ID: CP026106_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026106_7

3127468-3127577

Orphan

Consensus_repeat	Method
TTCGTGCTTCAAGCGTCGCCCCTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026106_7

>merge|CP026106|7|3127468-3127577|CRISPRCasFinder
TTCGTGCTTCAAGCGTCGCCCCTGTTTTTTTGTCTGCGACGCTATGTGGCTTGCTTTGGCTTTGCGCTGGCATCCGCGCGTTGCCTTCGTGCTTCAAGGGTCGCCCCTGT

>CP026106|7|6|3127468-3127577|CRISPRCasFinder
TTCGTGCTTCAAGCGTCGCCCCTGT	TTTTTTGTCTGCGACGCTATGTGGCTTGCTTTGGCTTTGCGCTGGCATCCGCGCGTTGCC
TTCGTGCTTCAAGGGTCGCCCCTGT

Protein	Signature genes	Signature genes Name	Protein_function
CP026106.1\|AUT72816.1\|3119273_3120488_+\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225755
CP026106.1\|AUT72826.1\|3135035_3135761_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
CP026106.1\|AUT72824.1\|3132112_3133399_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP026106.1\|AUT72825.1\|3133671_3134892_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|178031
CP026106.1\|AUT73235.1\|3118794_3119097_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378701
CP026106.1\|AUT72830.1\|3139469_3140396_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176113
CP026106.1\|AUT72817.1\|3120503_3121103_-\|LysE-family-translocator	unknown	unknown	gnl\|CDD\|224199
CP026106.1\|AUT72823.1\|3131345_3132095_-\|2-keto-4-pentenoate-hydratase	unknown	unknown	gnl\|CDD\|226480
CP026106.1\|AUT73236.1\|3125061_3126045_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP026106.1\|AUT72819.1\|3121641_3123825_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271332
CP026106.1\|AUT72821.1\|3126273_3127398_+\|aminotransferase	unknown	unknown	gnl\|CDD\|235989
CP026106.1\|AUT72829.1\|3138165_3139359_-\|CoA-transferase	unknown	unknown	gnl\|CDD\|224717
CP026106.1\|AUT72814.1\|3115855_3116845_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223659
CP026106.1\|AUT72815.1\|3116900_3118607_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223566
CP026106.1\|AUT72828.1\|3137221_3138169_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
CP026106.1\|AUT72831.1\|3140618_3141734_+\|porin	unknown	unknown	gnl\|CDD\|238208
CP026106.1\|AUT72822.1\|3128291_3131306_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP026106.1\|AUT72818.1\|3121232_3121490_-\|hypothetical-protein	unknown	unknown	unknown
CP026106.1\|AUT72827.1\|3135815_3137159_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP026106.1\|AUT72820.1\|3124056_3124956_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|183067

Protein	Function_ID	Function_description	E-value
CP026106.1\|AUT72828.1\|3137221_3138169_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	1.69277e-159
CP026106.1\|AUT72817.1\|3120503_3121103_-\|LysE-family-translocator	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	3.71046e-16
CP026106.1\|AUT72824.1\|3132112_3133399_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.28951e-95
CP026106.1\|AUT72825.1\|3133671_3134892_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|178031	PLN02409, PLN02409, serine--glyoxylate aminotransaminase.	1.36511e-154
CP026106.1\|AUT73235.1\|3118794_3119097_+\|hypothetical-protein	gnl\|CDD\|378701	pfam11737, DUF3300, Protein of unknown function (DUF3300). This hypothetical bacterial gene product has a long hydrophobic segment and is thus likely to be a membrane protein.	4.19158e-06
CP026106.1\|AUT72830.1\|3139469_3140396_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176113	cd08421, PBP2_LTTR_like_1, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.23994e-80
CP026106.1\|AUT72816.1\|3119273_3120488_+\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|225755	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown].	3.17838e-130
CP026106.1\|AUT72823.1\|3131345_3132095_-\|2-keto-4-pentenoate-hydratase	gnl\|CDD\|226480	COG3971, COG3971, 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism].	3.70342e-13
CP026106.1\|AUT73236.1\|3125061_3126045_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.75045e-30
CP026106.1\|AUT72819.1\|3121641_3123825_-\|hypothetical-protein	gnl\|CDD\|271332	cd14962, NHL_like_6, Uncharacterized NHL-repeat domain in bacterial proteins. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	3.00644e-09
CP026106.1\|AUT72821.1\|3126273_3127398_+\|aminotransferase	gnl\|CDD\|235989	PRK07324, PRK07324, transaminase; Validated.	0
CP026106.1\|AUT72826.1\|3135035_3135761_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	3.12197e-48
CP026106.1\|AUT72829.1\|3138165_3139359_-\|CoA-transferase	gnl\|CDD\|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	1.15288e-149
CP026106.1\|AUT72814.1\|3115855_3116845_+\|hypothetical-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	6.4782e-32
CP026106.1\|AUT72815.1\|3116900_3118607_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223566	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones].	8.66591e-65
CP026106.1\|AUT72831.1\|3140618_3141734_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	5.96006e-68
CP026106.1\|AUT72822.1\|3128291_3131306_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.8072e-75
CP026106.1\|AUT72827.1\|3135815_3137159_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.12713e-87
CP026106.1\|AUT72820.1\|3124056_3124956_-\|EamA-family-transporter	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	9.57592e-22

>CP026106.1|AUT72821.1|3126273_3127398_+|aminotransferase
MQIREFGVERWMDLYENQCELNLAETCVESLTVGELLKIAGKEDALLGEILPMKLTYGAIDGTERLRSNVASLYEKQGVPNVLITHGAISANALVYETLVEPGDHVISVLPTYQQHYSIPESYGAKVDILRLREENGFLPDLDELRRMVTPTTRVIAINNPNNPTGSLMDREFLVEIAGIARSCGAYVLNDEVYRGTDQEGTGFTASIADVYEKGISTGSMSKTWSLAGLRVGWIVAPVELLQRVRTHRDYNTISVGMLNDLLASIALENRKAILERNHGILRTNLAVLDAWIAKEPLLSYVKPKSGTTALVKVNVDMTSREFCVSLLEKTGVMFTPGSALDVEGYVRIGYTNSREVLVAGLAKVSEFLRVRAG
>CP026106.1|AUT73236.1|3125061_3126045_+|AraC-family-transcriptional-regulator
MLAVYWLQALSLCVSFSFRRIHVNTPLIPTTDPAAPPFGLHSVCKTLSDSNATLERFAWLGDQLAVAIWTRETKEAETIYAQPGHHTLSCYLDGGYRTERQKLPGRYGAPSRLCALPGDHESRWWVRGHMHFMHLYFLPEHFTQRAIRELDREPRELTLADRTYFEDEHIATLCQSLANDAWDDADGRLRANETSHEILSLLLRSQGVNRADAVLKGGLAVATRRRLREYIDQNLTQPLTLGELAAVANLSEFHLARMFRASFGLPPHAWIAQQRLERARTLLRTTALPLVDIATQCGYANASHFSHRFRQGVGVSPAAWRQALRAG
>CP026106.1|AUT72820.1|3124056_3124956_-|EamA-family-transporter
MNLFLYVVTVLIWGTTWIAIKWQLGVVPMSVSIACRFLLAAIVLFALLKIMRRPMWPPRAAWRFLVAQGLALFCVNFLCFYYAESVVPSGLVAVVFSTAPLLNSLNGRLFMGRPLQPTAIVGAVLGLAGIVCLSLQQMAGHLGDHAAWLGLAVAFAGTMCFSAGNLLSSRMQSMGLHPIVTNSWAMLIGASVLTVGSLAAGLPFALETDARYLGALVYLAVPGSVIGFTAYLMLVGRIGPERAAYCTVLFPFVALAVSTVFEGYRWSALAVVGLVLVVAGNLVAFGVTQRLFVRRARAA
>CP026106.1|AUT72819.1|3121641_3123825_-|hypothetical-protein
MKVSTRLAATLFVLGSLIPLGAAAQSQLTYTTSWIGNSFGFGDGKWMQQDIQAINVAPDGTVFTNSPWDESGSEIAAYKNGDKIAVAGATHGWGAAGGDAIASNQAYVYAAMSIGNQNNGLVGADYPPSGQTWFGITRRSLANIAVGVPFDSGIGNSANATKNSFLRVNAVATGTDAGIRGLAATDTELYASDTYGNQIVVFDANTMRRLRSWNVAAPGRIAIDTDSTIWLMSGFGTGSVSVLHYSSTGAPLAGTLALPAGTVPTDIAISPAGQILVADNGPKQQVLVYDRAASGATRLTGALGTLYGIFHEPKGTPGNWRFNGITGIGFDQAGNFYVAQNGEGPRPLASATVGQGAVLESYRYATRGFNWRLQGLTFVDSAAFDPATPNIVYTGSKRFMMDYAQPPGREGKYAGFTLNRFDFPDDPTFHQPRGVRGEPMVRRINGKPYLYTLDPGAHYLNVYRFDAAHDEVAIPSGLFAQNPLPGDWPVGQPTYGEWMWRDTNGDGHVDASEITGNPSTGSTVGNGFWWVDTPGNVWLATPASGIRETPLQGFDSADNPIYTYASSKTFPMPAPFNRIARIVYIAETDTMYVSGYTSSLPWDATHWKEAGRILVRYDNWSSSSPTPVYTIALPWNASSNPQITPVGVAVAGNYIFVSELYTPKVDVYDARSGQMVGYMTPGAAVGNTTGWVDVYLGISAVRRGNGEYVVLLEDDARAKILMYRWIP
>CP026106.1|AUT72818.1|3121232_3121490_-|hypothetical-protein
MTPEDPDKQQTGVQPDLEHLDAAVSHVNEMVSSGNIAASAARGILYSLIETLGTLVGDPDLPEHARSGYEGLLETARELRVKLDH
>CP026106.1|AUT72817.1|3120503_3121103_-|LysE-family-translocator
MLSPTDTALLALGIIVVLITPGPTNTLLAAAGLRQGARRSLPLIGAELAGYLVSISAWGRFLAHAAHTLPWLPSVLRIASGLYIAYLAVDMWRAAVALPDSAQPANGPRALFVATLLNPKALLFAGTIFPSIAFEHLATYGFAMSLFACLLAPIALAWISFGAALGSGKLTWLDPVKMQRAASIVLGMFSLSLAWAALH
>CP026106.1|AUT72816.1|3119273_3120488_+|winged-helix-turn-helix-domain-containing-protein
MITLPLPAARTLHLAAQGLLFPPRRKATKADVLDAIRHMAQLQIDTIHVVARSPYLVLFSRLGAYQPQWLDEHLAEGKLFEYWAHEACFLPIEDYGLMRHRMLDPGDMGWKYAADWHAQYRAEIDDLLAHIRATGPVRSADFAREAGKSNGWWDWKPQKRHLEVLFAIGELMVAERRNFQRVYDVTERVLPHWNDKRHLQPVDAVAKELLRRSCRALGVVRSDWVADYYRMPRRPYADDLHQLADEGELTPVRVEGWKQPTFVHRDFAPMIDDAANGKIASTVTTLLSPFDPVVWDRKRAAALFDFDYVIECYVPAPKRKYGYYVLPILNRGKLIGRVDAKAHRASGVFELKALHLEPGVRVSGRLTSDLRRALQRCADWHGTPQLQITSAPDELRAALAAGDE
>CP026106.1|AUT73235.1|3118794_3119097_+|hypothetical-protein
MIKRAMVLVAIGLAAACVSTAASAHVGVGVYLGGPVYAAPPVVYAPPVVYAPPPVVYAPPPPVYYGGYGGYGPRYWGGGPRWHDHGRHRGWEGRHHHGRW
>CP026106.1|AUT72815.1|3116900_3118607_+|FAD-dependent-oxidoreductase
MGVTREGEDAQRAAVNEAPFSTLSTRRHQMFPILTPEEIKRLCRFGERQDFEAGELLCRTGSTGPGMFVLLKGSVKVFQRDGLGREMLVNEHHQGSFLAEVGQLSGKPALVDGLALEHVEALLISPERLRALIVAEAELGERIMRALILRRVGLIERGAGGPIIVGQSNDRRLVSLQGFLSRNGHPHTVLDERDEDGLRVIEQFAAGPEDMPLVICPDGSVLRHPSDPELATCLGLIPDLDSEHVYDVAIVGAGPAGLATAVYAASEGLSVIVLDSRAPGGQAGASSRIENYLGFPTGISGQALAGRAFVQAQKFGAHVAIPVKVKHLHCEERPYRLELQCQGSIRAQTIVIASGAVYRRPEIDGLDRFDGRGIYYWASPVEAKLCKREEIVLVGGGNSAGQGIVYLASHAKHIHVLIRRSGFEATMSRYLIDRIASLPNVTVYPGSEIGWLEGSEGGLEQVGLKNPCADGRDCFDSRHLFLFTGADPNTDWLRSCGVELDKKGFVITGANSACDLNTSVEGVYAIGDARAGSTKRVAAAVGEGAQVVAQIHQMLAQLAGETTVALGA
>CP026106.1|AUT72814.1|3115855_3116845_+|hypothetical-protein
MLHDLVEQYGPAIVFVNVLAASIGLPVPAMPSLVLFGAMAAMHPGSVGAQVLPVLVLAVFATLIGDSAWFAAGRIYGGNTLKTLCKLSLSRDTCVKKTERFFGRWGVRVLAVAKFVPGLSIVSIPMAGAMGTPYRMFLAYDSIGATLWSGLGLGLGVVFAQQIDMLFAGASRLGKMTAVVVVVLLATYCAYRWYRRRQLIKKLATARMDVDELYDLMLDKRTPVLFDIRSEEKRALDPFVIPGSVFADERQLGEIVAKYPHDQKLVIYCSCPNEVSAAWMAKQLADAGFKDVIPLRGGLDAWRDAGRQLEPLAEEAEPTLDIGITPKTV
>CP026106.1|AUT72822.1|3128291_3131306_-|FAD-binding-oxidoreductase
MSNADSLLVKPIHLVPSSARLSTPLANRLRKELRGDVLFDAASRGRYSTDASIYQIMPIGVVVPRDQDDLLVALDVARSERVPLLARGAGSSQCGQTVGEALVIDTSKWLNQVIAFDKEKRTVTVEPGIVLDHLNAWLKPHGLWFPVDVSTAAQCTIGGMAGNNSCGSRSIEYGNMVHNVDAIDAILADGTQAHFASLRDAPQGARLQQIVEDVKAIALRERDEIVAQVPKVLRRVAGYNIDLFDCQNPRAYTDDGFANLAHLLVGSEGTLAFSRQLTLKLVPLPAHKALGVVNFPTFWQAMDLTQHIVKLKPVAVELVDRTMIDLAMSNPAFRPVIEKALVGRPEAILLVEFAGENRDEQFASLKQLTELMADLGLPDSVVQMPDAGEQKALWEVRKAGLNIMMSMKGDGKPVSFIEDCAVPLEHLAEYTSRLTEVFHRNGTEGTWYAHASVGTLHVRPILDMRRDGATKMRAIAEEAAALVREYKGAYSGEHGDGLCRGEWVAWQYGPRINRAFSEIKALFDPNNRMNPDKIVRPPKMDDASNFRFAPGYKAQSLTPALDWSTWNVERDPMTGVETARGTGNDLAGGLAKAVEMCNNNGHCRKFDAGTMCPSYRVTKDEQHVTRGRANTLRLALSGQLGDEGLASQDVKDTLDLCVSCKGCKRDCPTGIDMAKFKIEARAAWTRKNGLRLREKMIAFMPRYVAMAARMPGVFSFAADMPWFKRALGFAPQRSLPRFVKPFLSSGYVKAASLSAQSAQKEVLLFVDTFNNSIEPENARAAQQVLEAAGYTVHFNTVEGERPLCCGRTFLAAGLVDEAKHEARRMLDAFRPFVERGVPVVGLEPSCLLSLRDEFLQYGFGEEAERLSKLAMLFEEFLVREHKAGRLKLDLKPLDDASQALVHGHCHQKAFDVFSPVQTVLKWIPELKVSTVESSCCGMAGSFGYEVEHYEASMAMGELSLLPAARAIDARTLMVADGTSCRHQIFDGAGVRAMHVARVLVRALR
>CP026106.1|AUT72823.1|3131345_3132095_-|2-keto-4-pentenoate-hydratase
MTMLTQQLADARADHTTLASLSPELIPADMGAAYAIQHELLAMRGARIGGWKIGAKSAEGAIQGAPLPSTDLHADGARLPRAHYTPLGLELEIAFRFGRHFEPSANAYHEVEVLDAIDSMAATIEIVASRFAQWPNVDKLAQLADLQNHGALIVGEFTKYRRDFPFVAPALGFTFEGQDVVKATPSNPCGDPRRLLTWLVNHCTQHHRIAVTPDMIVTTGSYTGMFFPQHAGTARGQIDGLAPVSVTLE
>CP026106.1|AUT72824.1|3132112_3133399_-|MFS-transporter
MKRFRVTSATSIVLLMLCIMYFITYLDRVNVSTAAAGFGKEFHLSHTEIGLVFSAFAYPYLVFQIIGGWVSDRFGAKRTLIACGAIWALATLLTGFAGGLVSLLFARVLLGFGEGATFPAATAAMSRWVAKEKRGFAQGITHAAARIGNAVAPGVIVLVMTTWGWRESFYICGAFSLLWVVVWAMTFTEYPKEHRRITQEELDFLPPPKAKMANVPWKALFKRMAPVTIVYFCYGWTLWLFLSWIPQYFLHSYQLDLKKSAIFASAVFFAGVIGDTLGGIVTDKVFERTGNLRRARSWMVSICMLLTLASLVPLMLTHNLYVSMVCLSAGFFFAEMTIGPMWAIPMDIAPEYSGTASGMMNTGSALAAIISPVLSGYLIDTFGSWELPFAGSMLLMAIGVVLAFRMQPESRFETGAEPSAQPATRFNA
>CP026106.1|AUT72825.1|3133671_3134892_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MLKLDFHPAGRHFLQIPGPSPVPDRILRAMSYPTIDHRGPEFGALGLKVLDGIKKIFKTQQPVVIYPASGTGAWEAALSNTLSPGDHVLMFETGHFATLWKKMAENLGLKPEFLGLPGIEGWRRGVQPQMIEARLREDTQHAIKAVCVVHNETSTGVTSDIAAVRRAIDAAGHPALLLVDTISGLACADYRHDEWGVDVTVSGSQKGLMLPPGISFNAVSPKAIEAGKQAKLPRAFWDWTEIIEMNKSGYWPYTPNTNLLYGLYEALDMILGEGLDNVFARHDRLAEACRRAVRAWGLEIQCADPSVYSPVLTGVMMPDGVDADAVRKVIYERFDMSLGTGLGKMKGRMFRIGHLGDCNDLTLMATLSGVEMGLQIAGVPVAASGLPAAMEFLMSQPNATKLKAAA
>CP026106.1|AUT72826.1|3135035_3135761_+|GntR-family-transcriptional-regulator
MQNSDIDAGLTPPPLMPKVERQRLHDTVVEHIRRFIVEGTLEPGKKLNERELCETLGISRTPLREALKVLAAEGLIDIEPNRGASVSKMSEAELRETFELMSGLEAFSGELAAERMTAVELTEIKALHYAMLACRAQNDLAGYYSRNQAIHDKINEAARNSALRQTYIAVNRRLQALRFRSNFQIPKWDSAIHDHDEMLKALEARDGKRLSAILRQHLLDKRDAVLQVQSREDAAAAKLKA
>CP026106.1|AUT72827.1|3135815_3137159_-|MFS-transporter
MSTPGAVAAGSRDDKLAAAADIIKKVTWRLMPLIMICYLFAFFDRINISFAKFQLQSDLGFSDTAYGLGASLFVIGYVLFEVPSNMLLYKVGARRWIARIMISWGLATAAMVFVQNEWQFYGLRFVIGAMEAGFAPGVLYYLTLWFPASYRGRVTSLLFLASAFSGLVGAPLSGLVLGQMDGVFGIRGWHWLFLLGGLPCIVLGILVLKVLKDRIEDAGWLSPAEKTYLSSQIAQQAQPTTHGNSLLGAIRTPGFLTLGLIYFLIQIASYGLNFWAPHLIRVAGTQNPTIIGLLTAVPYICGAICMVIVGRLSDASGERRKFVSGLLVMAAVGFFAAGFFDKQTVMLVVALAVLGAGVIASIPAFWALPPKLVTGAGAAGGIALINTLGQLGGIVSPVMVGRVRDVTGSTTPALYVIGGLSLVCALIILYGLPQSLRQKDHTGSAGA
>CP026106.1|AUT72828.1|3137221_3138169_-|hydroxymethylglutaryl-CoA-lyase
MNFECETFDKLIVQEVAPRDGLQIEPTWVETADKIALIDQLSTAGFTRIEAGSFVSPKAIPALRDGEAVFTQIQRRAGVVFVALVPNVKGAERALNAHADELNLVMSASQTHNRANMRMSCEASLVAFGDIVRLAKHFPVSLNATVATAFGCPFEGKIDEDRVVSIVDTYREMGIDGITLADTTGMANPRQVARLVKRVLQRVPAEALTLHFHNTRGLGLANVLAAYEAGARRFDAALGGLGGCPFAPGASGNICTEDLVNLCDEIGIPTGIDLPKLIALSRTLPALLGHDVPGQLMKAGRNCDVHPVPDYVRAI
>CP026106.1|AUT72829.1|3138165_3139359_-|CoA-transferase
MSGPLQGIRVVEIGTLIAAPFAARLLAEFGAEVIKIEAPETGDPLRKWRKLHEGTSLWWYLQSRNKKSICVNLKSQEGADVVKRLAADADVVIENLRPGALEKLGLGWDVLHAINPKLTMVRISGYGQTGPYRDRPGFGAIGEAMGGIRYTTGDVDGAPARVGVSLGDSLASLHGVIGALMSLLRVKTGQGDGQVVDVSLVESVFNLMESLVPEYDLLGHVRERSGGALPGIAPSNTYRTEDGGFVVIAGNSDPIFKRLMHVIGRADLADDPALARNDGRVAQSAMLDAAITAWTSHQSIDDVLAALERAEVPSGRIYSVADIVADPHYQAREMLLKADLPGGASVRMPGIVPKLSETPGEVHWQGPTLGEHTSSVLADLGYEQSEIERLRREGAVQ
>CP026106.1|AUT72830.1|3139469_3140396_-|LysR-family-transcriptional-regulator
MVLKNLLRRLDLTTLQLFIAVYEEGTLTRAAEREAIAVSAASKRLLELEQAVGATLFQRNARGMTLTPAGETLLHHARRVMRGIENIGIELAGHASGVRGYVRMMANLSAIVEFLPEDLRAFLAVNDRVKIDLEERPSGGVVEAVADSLADLGICSGEADARGLEVTHYRHDTLCVVMRDDHPLAGRASVAFEETLDSDHVGLHSASSINARTHMAARQAGKALKLRIHVPGFDAVCRMVQAGMGVGVLPVNVYRIMGRPLGLVSVALEDEWSERSLIIVTRDSARLSPVARLLFDHLSSVEALSGKA
>CP026106.1|AUT72831.1|3140618_3141734_+|porin
MCSSRRSMMGAMLFLAASGAAAETGVTLYGVVDVFGQYLNNGGKGSWSERSGGNSGSYFGLKGTEDLGGGLKAVFNVENGYNVNNGAFFGDSTAMFYRQAWVSLAHEKYGSITFGRQYQPTFWALYPSDPFRANEVLSPLAAAATTVDRNTLAVQSAGGRSSNAVIYKSPNVGGAQFWGMYALAASVTQPLPLSTGNMLDLAATYSGYGLYVGLAYQNQHPGSKTVPGLPAMLPSLSTEHFTSALSYRVGIVNLQFNYGYHRPKNAAAGSLAARLNAAHSFSISELGATIQATPADALEIAGFQRVVRGVHDNTWGVQIGADHSLSKRTALYARGGYMRNNGTATMSWPGVAVSSPGTSQTLAVAGMTHRF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026106_6	6.1\|3071314\|28\|CP026106\|CRISPRCasFinder	3071314-3071341	28	MN334766	Serratia phage PCH45, complete genome	113870-113897	6	0.786
CP026106_4	4.1\|984003\|30\|CP026106\|CRISPRCasFinder	984003-984032	30	DQ386162	Streptococcus phage M102AD, complete genome	3597-3626	7	0.767
CP026106_4	4.1\|984003\|30\|CP026106\|CRISPRCasFinder	984003-984032	30	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	354191-354220	7	0.767
CP026106_4	4.1\|984003\|30\|CP026106\|CRISPRCasFinder	984003-984032	30	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	693031-693060	7	0.767
CP026106_4	4.1\|984003\|30\|CP026106\|CRISPRCasFinder	984003-984032	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2242610-2242639	7	0.767
CP026106_2	2.1\|844761\|35\|CP026106\|CRISPRCasFinder	844761-844795	35	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	2239841-2239875	8	0.771
CP026106_3	3.1\|961323\|43\|CP026106\|CRT	961323-961365	43	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	200409-200451	8	0.814
CP026106_3	3.1\|961323\|43\|CP026106\|CRT	961323-961365	43	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	198188-198230	8	0.814
CP026106_4	4.1\|984003\|30\|CP026106\|CRISPRCasFinder	984003-984032	30	NZ_CP029179	Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed3, complete sequence	1332-1361	8	0.733
CP026106_5	5.1\|1814712\|34\|CP026106\|CRISPRCasFinder	1814712-1814745	34	NZ_CP015808	Borrelia mayonii strain MN14-1539 plasmid lp36	41486-41519	9	0.735
CP026106_5	5.1\|1814712\|34\|CP026106\|CRISPRCasFinder	1814712-1814745	34	NZ_CP015793	Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence	41486-41519	9	0.735
CP026106_3	3.3\|961444\|35\|CP026106\|CRT	961444-961478	35	NC_010494	Arthrobacter sp. AK-1 plasmid pSI-1, complete sequence	41762-41796	10	0.714
CP026106_3	3.3\|961444\|35\|CP026106\|CRT	961444-961478	35	NZ_CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	214699-214733	10	0.714
CP026106_3	3.1\|961323\|43\|CP026106\|CRT	961323-961365	43	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	271188-271230	11	0.744

1. spacer 6.1|3071314|28|CP026106|CRISPRCasFinder matches to MN334766 (Serratia phage PCH45, complete genome) position: , mismatch: 6, identity: 0.786

tactcccatcccatgcacgtcaagtgcg	CRISPR spacer
caaatccatccgatgcacgtcaagttcg	Protospacer
.*  .****** ************* **

2. spacer 4.1|984003|30|CP026106|CRISPRCasFinder matches to DQ386162 (Streptococcus phage M102AD, complete genome) position: , mismatch: 7, identity: 0.767

accaaaaccgcacgcgccacgaagccaaac	CRISPR spacer
gccaaaaccgcacgcgccaagaaaatcaag	Protospacer
.****************** ***. . **

3. spacer 4.1|984003|30|CP026106|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.767

accaaaaccgcacgcgccacgaagccaaac	CRISPR spacer
ggcgagtccgcacgcaccacgatgccaaac	Protospacer
. *.*. ********.****** *******

4. spacer 4.1|984003|30|CP026106|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.767

accaaaaccgcacgcgccacgaagccaaac	CRISPR spacer
ggcgagtccgcacgcaccacgatgccaaac	Protospacer
. *.*. ********.****** *******

5. spacer 4.1|984003|30|CP026106|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

accaaaaccgcacgcgccacgaagccaaac	CRISPR spacer
aaacaaaccgcccgcgccgcgaagccacaa	Protospacer
*   ******* ******.******** *

6. spacer 2.1|844761|35|CP026106|CRISPRCasFinder matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.771

cgcacaggtgcgacacatgaagcacggaggcaaag	CRISPR spacer
cgcacaggggcgacgcatgaagcacgctaacaatt	Protospacer
******** *****.***********  ..***

7. spacer 3.1|961323|43|CP026106|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.814

ggcaaacccacaggggcgacgcatgaagcacgaaaaggcaaag	CRISPR spacer
ggcaaacgcacaggggcgacgcctgaagcacgctaacaaaacg	Protospacer
******* ************** *********  ** . ** *

8. spacer 3.1|961323|43|CP026106|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.814

ggcaaacccacaggggcgacgcatgaagcacgaaaaggcaaag	CRISPR spacer
ggcaaacgcacaggggcgacgcctgaagcacgctaacgaatcg	Protospacer
******* ************** *********  ** * *  *

9. spacer 4.1|984003|30|CP026106|CRISPRCasFinder matches to NZ_CP029179 (Acidibrevibacterium fodinaquatile strain G45-3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.733

accaaaaccgcacgcgccacgaagccaaac	CRISPR spacer
ccagtcgcctcacgcgccacgaagccatac	Protospacer
 * .  .** ***************** **

10. spacer 5.1|1814712|34|CP026106|CRISPRCasFinder matches to NZ_CP015808 (Borrelia mayonii strain MN14-1539 plasmid lp36) position: , mismatch: 9, identity: 0.735

cgcgaaaaccccaaaaaaaccaaaccgaccgagc	CRISPR spacer
ttctaaaaccccaaaaaaagcaaagcgaagcaac	Protospacer
. * *************** **** ***   *.*

11. spacer 5.1|1814712|34|CP026106|CRISPRCasFinder matches to NZ_CP015793 (Borrelia mayonii strain MN14-1420 plasmid lp36, complete sequence) position: , mismatch: 9, identity: 0.735

cgcgaaaaccccaaaaaaaccaaaccgaccgagc	CRISPR spacer
ttctaaaaccccaaaaaaagcaaagcgaagcaac	Protospacer
. * *************** **** ***   *.*

12. spacer 3.3|961444|35|CP026106|CRT matches to NC_010494 (Arthrobacter sp. AK-1 plasmid pSI-1, complete sequence) position: , mismatch: 10, identity: 0.714

aacaaaccaaaaccggccacgccacgaaggcaaag	CRISPR spacer
cggtgagtgaaaccggccacgcaacgaaggcaaaa	Protospacer
 .  .* ..************* ***********.

13. spacer 3.3|961444|35|CP026106|CRT matches to NZ_CP024313 (Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence) position: , mismatch: 10, identity: 0.714

aacaaaccaaaaccggccacgccacgaaggcaaag	CRISPR spacer
catcgccaaataccggccacgcctcgaaggcaaga	Protospacer
 *. . * ** ************ *********..

14. spacer 3.1|961323|43|CP026106|CRT matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.744

ggcaaacccacaggggcgacgcatgaagcacgaaaaggcaaag	CRISPR spacer
agcaaacgcacaggggcgacgcctgaagcacgctaacaattcg	Protospacer
.****** ************** *********  ** .    *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP026108

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026108_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026108_1

206743-206833

Orphan

Consensus_repeat	Method
CGGCGGACGGCGACACGTGTCGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026108_1

>merge|CP026108|1|206743-206833|CRISPRCasFinder
CGGCGGACGGCGACACGTGTCGCACACAAAACGAGCTTTACCGCCAACTACATGCCGCTTGACGCGCGGCTGACGGCGACACGTGTCGCAC

>CP026108|1|1|206743-206833|CRISPRCasFinder
CGGCGGACGGCGACACGTGTCGCAC	ACAAAACGAGCTTTACCGCCAACTACATGCCGCTTGACGCG
CGGCTGACGGCGACACGTGTCGCAC

Protein	Signature genes	Signature genes Name	Protein_function
CP026108.1\|AUT75608.1\|215316_220770_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225943
CP026108.1\|AUT75598.1\|197694_200043_+\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|237425
CP026108.1\|AUT75612.1\|225641_226115_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75599.1\|200366_200582_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75603.1\|202071_202446_+\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75596.1\|194353_194545_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75609.1\|220785_222756_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370517
CP026108.1\|AUT75604.1\|205298_206015_-\|DDE-domain-containing-protein	unknown	unknown	gnl\|CDD\|225853
CP026108.1\|AUT75597.1\|195600_196395_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP026108.1\|AUT75602.1\|201750_202017_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|283241
CP026108.1\|AUT75614.1\|228130_228898_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|366760
CP026108.1\|AUT75607.1\|212177_215342_+\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75610.1\|223064_224066_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75605.1\|207268_207541_+\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75613.1\|226767_227634_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75601.1\|201347_201656_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378572
CP026108.1\|AUT75606.1\|208049_210746_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|366832
CP026108.1\|AUT75611.1\|224620_225274_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75595.1\|193328_193799_-\|hypothetical-protein	unknown	unknown	unknown
CP026108.1\|AUT75600.1\|200666_201080_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026108.1\|AUT75608.1\|215316_220770_+\|hypothetical-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	1.6596e-13
CP026108.1\|AUT75598.1\|197694_200043_+\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.84727e-144
CP026108.1\|AUT75609.1\|220785_222756_+\|hypothetical-protein	gnl\|CDD\|370517	pfam09471, Peptidase_M64, IgA Peptidase M64. This is a family of highly selective metallo-endopeptidases. The primary structure of the Clostridium ramosum IgA proteinase shows no significant overall similarity to any other known metallo-endopeptidase.	3.57915e-32
CP026108.1\|AUT75601.1\|201347_201656_-\|hypothetical-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	4.91081e-09
CP026108.1\|AUT75606.1\|208049_210746_+\|hypothetical-protein	gnl\|CDD\|366832	pfam01833, TIG, IPT/TIG domain. This family consists of a domain that has an immunoglobulin like fold. These domains are found in cell surface receptors such as Met and Ron as well as in intracellular transcription factors where it is involved in DNA binding. CAUTION: This family does not currently recognize a significant number of members.	2.80801e-08
CP026108.1\|AUT75604.1\|205298_206015_-\|DDE-domain-containing-protein	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.62077e-72
CP026108.1\|AUT75597.1\|195600_196395_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.25048e-69
CP026108.1\|AUT75602.1\|201750_202017_+\|CsbD-family-protein	gnl\|CDD\|283241	pfam05532, CsbD, CsbD-like. CsbD is a bacterial general stress response protein. It's expression is mediated by sigma-B, an alternative sigma factor. The role of CsbD in stress response is unclear.	6.68438e-11
CP026108.1\|AUT75614.1\|228130_228898_-\|AAA-family-ATPase	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	2.87093e-59

>CP026108.1|AUT75604.1|205298_206015_-|DDE-domain-containing-protein
MKKATARQALPAGVAKVLKRLHYPLDVILLCVRWYVAYSLSLRNLEEMMAERGFQVDHSSVHRWVIKLVPLFEKAFRKHKRPVGRSWRMDETYVKVGGQWKYLYRAVDKAGNTVDFLLRAHRDKAAARRYFEKAIDRNGTPKTVTMDKSGANLAALQAINAERETPIKVRQVKYLNNIVEQDHRAIKRRTRPMMGFKDFRCARIILSGIETMHMIRKGQMKNSGVTRTVADQFYSLVA
>CP026108.1|AUT75603.1|202071_202446_+|hypothetical-protein
MSIQSKVNQWGSVSRFCIDRMADYGELISIKLAQARAQLAREVIALVALAVAGMFALSFFCIAIIATALTTPYFLHVSWAIAAVWLLLCVIAYIVVRSQKPANSFRVLHEEIHHDLEAVKEALK
>CP026108.1|AUT75602.1|201750_202017_+|CsbD-family-protein
METTKTEGTLREVAGNMNEAVGSVTGDTVTQLEGKADELRGKAQQICADATELAREAMVSRPLAVLAGATALGFVIGALWSRNRDTDA
>CP026108.1|AUT75601.1|201347_201656_-|hypothetical-protein
MGCGSAAPVQRLRMCPCGLSAICAVNQETKMDTGSEGTRLERIRDLAYRLWEQDGSPDDHTDQYWYEAERQIRTEGGEENGEASSEPADGQAETLRDDPMRQ
>CP026108.1|AUT75600.1|200666_201080_-|hypothetical-protein
MKSAAWLFSGQSTGICRHGSLPTPLSSAGALTGEARWRKDDAEVAVTAFRLQLGMLLRDLPVGTVAELGDLCVAWWGGKDLVFAHLRDDGTRPVEREFDLDDCEWRARREAFLAWLKEPRYGSRAEVRDWVSRQRQL
>CP026108.1|AUT75599.1|200366_200582_-|hypothetical-protein
MADTFRPGEIVTVSGIYSVVLEGGDSEGWTFDATCVEGDYFPPTRTGVGAHYELKYAAPYSYRHPELNPRK
>CP026108.1|AUT75598.1|197694_200043_+|hybrid-sensor-histidine-kinase/response-regulator
MPDKGQPGGTIQNWTDRWVAAVCDYSIFAISVEGRILTWNPGGIAIHGYQPEEIIGQCLDILYTEDDRQKMAPAAGLETARRSGRHETEGWRVRKGGSTFWASDVITALHSEDGELAGYVNIVRDITEKKAAHEAVLESERRFRMLVNGVTDYAIFMLSPDGIVTNWNSGARRIKGYAAEEIIGSHFSRFYMPEDAAAGLPQRGLTAAARDGRFEAEGWRVRKDGSRFWAHVVIDAIRDEEGTLAGFAKITRDITERMEANRVIEETRTALFQSQKMEAIGKLTGGVAHDFNNVLQVLRGNLELLENRHASDGWTRERLDRAIDAVERGAKLASQLLAFGRRQPLRPVVINLAPAIRGMDDLLRRALGETIEVETVVSGGLWNTIVDIHQLENVILNLAINARDAMPEGGKLTMELANAMLDDQYVAGLPDVAAGQYVMLAVSDTGTGMRPDVLERAFDPFFTTKPEGVGTGLGLSMAFGFVKQSGGHTRIYSEIGHGTTVRIYLPRSTEQAVEPPAKPNVRLLGGTETILVVEDDLKVQSTVVDMLCGLGYSVLKANSAEQALTVIRSGIHIDLLFTDVVMPGTLRSPDMAAQAVQLLPRLKVLFTSGYTQNAIIHGGRLDQGVELLSKPYSREQLAYKIRQILGAASATDRSQDATLPAANAGTTGLRVLLVDDDLALLEATGELVKMLGHTPATTGSPEEALRWLKDDAFDVVVADLEIPGTSGVEFVERAVQLQPALRVVFASGNEMPDPPALPFRWKALRKPYTLEELGDVLGRLAV
>CP026108.1|AUT75597.1|195600_196395_+|DNA-binding-response-regulator
MNIKYRVLIAEDHDLLRNGLCSMLAAQGEYAVVGEARDGKEACQLAMTLAPDLILMDLSMRGMNGIDASAAIKRRSPLVRIVALTVHQNEEYVREALRAGVDGYVLKDVSFDELLVAMRAVMQGKKHLSADVYGYMVGSFITGREAAGPKKAWDILTARERSVFKLIAEGRTNRQVGQYLNLSPKTIEKYRASVMHKLAIENLTELVLVAISMGLLTSLASKCAEPEEDDRVARLPSTRPEPSPSETGEPPEAPVSRLSDTAVG
>CP026108.1|AUT75596.1|194353_194545_-|hypothetical-protein
MKNQYEKAPAGAFQQMKSTIEEIEEDIRVLEEGGHLESAEMRRKLEKLRVQFAALSGERLDDK
>CP026108.1|AUT75595.1|193328_193799_-|hypothetical-protein
MKMIGLLGLLASAAVQAQVTLPLPAAYPTLLGASCGGVHVASYVTGFDKNGYIRGEVYARTRCGGSARGGGYRSQTYQAWHTIVWHLRQNYKLLPYDNVVPDPAFTATDAYGNSILDTCSDTTDGQPACVASAYIYYVPPTMTPISDSGPVNPDIR
>CP026108.1|AUT75605.1|207268_207541_+|hypothetical-protein
MLRAVLEPYAGKLARTVPRGPSFREGTRLPSNEFLSFRQQMMQQAIFMKASWRLAFILLSAPFHGSITFDDCASASNGTAEALESLPENM
>CP026108.1|AUT75606.1|208049_210746_+|hypothetical-protein
MAGHNLSSEALRDEIIKIGGELSKLYEWLKTYVPLLTGPDITSFTPYAGYGGSLIEINGYGFAEKREDNAVTIGGKPARVISATDSQLRVIAPLDVVTGPIGLTVGLKTVSGPYLFTLLPYPKAGDETDGPPIEFEGHGQGQAGDQPSTGKLRVAVALVNPADKVPADPVGARTAVVNAWNNVHTFYDQQSYTRLNVAVDVTPKWKTITGNTSDYLNSAGDNIDGMQVARLAAECAQACVDAGLKLDDYGMLACVIFLDGHFIRAWGNLSTQLFSYNDGSTHIDISTANEINYIEIQESANWGRFAHETGHNISAAPSFTQSDDETATLGEDVYSSDLVDPLAASAQDFEIMGNHDQHPGFCAYHHDKLGWCDGTNILDLQWDRNPFQQNYQLVAHGLTQNAAGGRYHMLRIRVSSGLFYYVEVRQRPPAASGQVFDPNIPLGGSPRDGGVVVYKILTDVNNTNQQWRYVTLLHDDQVLATGGIASDPARALTITVLDDNVASSPRVCSVRVEWAQAISDDPSGAFDLRVDPWDSNYQTPDIWVDRMPFGSFDQPNDSQGRPQGNGDKPRPHEINHLFGRVHCDGSAGATNVRVTYYAVDPPGVGDNGNWTPLKTTVIPNISAGAFVDTFVNWVPAIGQHTCLKLYAEQQLGEITGGNNFAQENVLDFEAPASSVPDAVLLPVAVRNPKKDRRQIHISLAGVPRGYRVQFPHQWVWLDGLEEKTFNLAVIPTVDYMMYVGKERQVPRRADVRIRGGVAYNYQIPLSGGVPPTRISPIGGITARVSPKRRVEVMMEEDREQSTGDTIGFIGHIAPSVPDQRIRVDLTDPAHRLRVALAKTDASGIFRVSFDLTQPPDGSAARKVGAKEKPFPGQYLCVASVLNSPDAAEATSNTVVVMR
>CP026108.1|AUT75607.1|212177_215342_+|hypothetical-protein
MGHRVRIVRPDDLLNLEIECVNLRLDLANVANPALVPETVGDPAFLIYTFPPQAIAEQAYFESSTVPPPTGEPPLARTPHPPEVDDVKPVPGVAVHARIGGPSRLVFRVPSDASTRIPYAIESLLDWSGFELSISPLAAVPAKPTAEEAIAAPAITQPEPTHTVIELPYHLQLSPGVGAAWRHARTPVSHGGWSELWHARLVTRAIENGEPVEPSIDAPAPLRALWAEGFDPAETLTANDLFAGEPGIGRAAMAAVDRKQIVALTSAFHDYISVDERSSEQSTFEPTPIQCERLMLSPLGGWLKSHGEWDPPCRRLGRAADPPFDWQTVFRREPVEAEHAMRIDPQALKDHPFVPGLGGEPGPPLNLSQWVHVASQGRDHYVRVVYDGCLCGTDHPASLVKVTERRFCDVNGTAVAYLVQYMYVVVRQPEVDYSTRPIAHDGRSLPFTRIRLTTTVTPPIDDPAGASAVGGGSSSFWVMVTDPATGKLVDFVFHGVATDLAGHRWNFTGPLMFVPSGEQHLDLALAAYFNDGGGRRRAFSVSGQMVTYAAPDPTSAADNTTFATEAILLAASPSAQTSCGFVPALDTADVRIPAVEQLLGVNTVTSIALNQSFLDTGFVGGTGVFADIRSGLGIKFDASQAGGIATPNLNLSCLSRDHGPLAGDIGKAAAGAFDPGEFFPKGTAQLFGVVDLLDLLPAGTIADNAPKLVTVRENGGKKIVTTIDWQPAMGNPDPPAGPLTFHREPDSTLIITGRIEQIVGTSPTPPATRMHGELTNFSIEFAEVVHIGFAAFDFTSENGRKPSIDVRLKPDDPIAFLGALAFIDELRKHIPPGLFGDGPSLDINATRIRAGFGIALPPLSVAVFALRNVSLNTALELPFSSGQPALDFGFSERHHPFQLAVALLGGGGFFHLQVDTAGIRQLEAALEFGAVAALDLFVASGSVHIMAGIYFAMNRNAHGDLAAMLSGYLRCGGELSVLGIISISVEFNLSFTYDDGTKKASGRATLSVEVEIAFFSKSIELTVERSFGRDGGDPTFEQLVETPAVWGEYAGAFA
>CP026108.1|AUT75608.1|215316_220770_+|hypothetical-protein
MNTPAHSHRGLVTIMASQRILLTTMPRGASVDPDVLPLSVLVSPRLTDADRLDSFGDWLSWTEHIANDGLSLTLGCGGRTANLSADTAVLRPDLWAALFNADTLVRPHVFDDYTGRTVFSYPVRLALSSLKNIYQRASLDLALPEREGSQQEHRQSHQGTLRSLLDGLQVGWNERSAPARRQAQRDLLKRGQTAGAARAPVVAPEDLGRDGLVLSARMPEPGSTGARAFNRMVVGPFSIFSHPPSGPALERLPPPDWQTHLDFHQALSALNNYPQLQRALGLVFDFDVPLDLVPVGPGNAFVTIAVTQVSPGWKWSLEPDVPRLETAVVHSEVDGGHRVFFAAPLWMVSGGKPAMPAIGLLPLEPAHYGLAQIDVDGALHKNIMLSETLSGYSGPPPLVPPHPDVFDPSATLPALRSGGLSLFADERAAALLTRFAESKAYNEALDKVQPRPFSAEDLVRGHRIDVWDSKTTGWHSLHRRNARYEIADAKAFDVTDEEGFVKLGATQASPDPDRVEPADDFYLHEAIARWSGWSLSAPMPGKHLSRFADPERALPKPGEEDQFVENEAPTPFKMRSEFHVVPGTLPRMRFGVRYRMRARVVDLAGNSLALDALLAERLSRFFALPRDADGVAYLRFEPVVAPQLVVRDASAITRPGSELERLVIRTFNSDASLDSAPANLVGSDRHVVPPRTSVEIGERLGMFDDANGKLIATADMHALISQREKGEFQQTPEVVSVAGQDKTFPLEPAPRLDAVPYLPDPLASGAALRDLPGSPDGTSAQVAPGVGPVVPAPYRLLDDPNPRAGSVLVVDFGGGGDWQKMRPFRIAPADGAMPPSWDPMDRVLTVFLPKGTTSVVPLSSWIAVNDLKLMGVWEWLREYVEVRASVPAEPEPLEHRLDTSQIGQVLQRALEGGHWMLTPPRLLTFVHAVQQPVGSPRFTGIALQHPASREGDANALPALQTQPETAPTADAELAALTAWRRPGALDAYLIGGLRIHGASTEKVDIVAEWEDPVDDPALGPPGTRQHRAPVDELPIDSIREHILFARSNEVRAVGYYVPSVDLVAFATGGDALGHLVPGVRLFQDTAPRHHIGDVQHHIVRYTAVATSRYRDYFAPELDFTRRSEPVEVSVPASARPLAPGIVYALPLFGWQRHTSSSVKHSVRFGGGIRVYLERGWYSSGQGELLGVVLWNYGNGVLDRESWKPFITQWGIDPIWETTRSIGFAPSIDNFSDAVAAESALTLEANVPGSPGGARGVVNVAGYPVAFDGERNQWYCDITLNTFSTTYMPFLRLALARYQPHALPDAKLSSVVLADFVQLTPDRTAVVTANPAHARELRVTVSGPAPGGPAPAFSDEPVPDPLIRKPTDIEVTLEQRDPAIDTDLGWTSVPTEVGHVVVERSGPAPDRGDITLWQGSVQFGDVPARNRFRVRIEEYEYPPANYTVVIDEHPGEPGPPPVRRQPRRLVYAETILVDSAVTEAAVEPTTGEGMPAPPDVWPPPSDPPYGPYVGPTFGQPGSTDSLPELSRAADPHEVDGHVKLLQAMLNAAGALPTSLQPLRVDGNFGGETESAVQNFQGSHLLPVSGTADGLTWYALTFAAPCPLLEPGVGVPGMQGALVAALQRALNLAGAFPRLGDNGEFDSATDAALARFQQQRGLVPSGGTDLATWLALTDVRDESGATGSMILTFDYDVTLADPIRFSGRTDADAPAPETEPIELSAIGRAGYVVELHDANDQPIYRRTLWDPFGLRMEGLAQTDDPTSGQLVSVPAETEPGTVEVTLPRLPGAAQVVFIGSPLDANRMDEPASVLARFDIADLA
>CP026108.1|AUT75609.1|220785_222756_+|hypothetical-protein
MAATTPLPIHGEPVLLFGSWASVDRHFNIVLLGDGYIDVEGHRELVDFALHAADLATKIVTTAPFDRMRSAINIFRIDVTSTSSWSAEEIQTWQTDHIDALDAEPDKDKRSQIMHDMMCNMPATNTALRARFCHQNMERLLIGNEDLAFRVASSSSRVTPDAILVIVNTNKSYGGGRIGKVAYAARQSFVPVALHELGHVGFGLADEYHFRFKVEENVSFKGGRLDEPNVSTSAHPKVSPWVDLLTPNVELPTTVEHDPEECPMLTEEQLKNGTFDLKKEGDKDSIGAFEGAKYRLCGVYRPALNCRMRENTQEFCAVCQQVIAEKLGARLFGNPSTQGKLPVDAATSLITFVPLAVPSDTMLMTYDLLTGAYAIYPCAQFVQRSLPQKPVRGRIAPFWNSLTSVYYKAAPHVLAIQYGTGAFALYRFAEDGTSLSFVRGKETPDFGLSRPFALLQVVPFSFAGDLHYLEYDIFTGQAAVKRISVASPNPETIRTLPLGQGRLGLAPFMLANGDPGTHFYSYDFASGALALRRFDGDDVADVWSTPTFGRGWTDLVPFHLVDVKSPLLAKPKVIDEPFDDSPFLLAHSRISGMLRMFRIRNDGVGLDIAYTDKNAGPGLSSFTAFRLLQDKRTYYLRYRWALLPGQQPTIEAFHCD
>CP026108.1|AUT75610.1|223064_224066_-|hypothetical-protein
MNQNQNQAGKMPEPAKVLLHQITSDDLLEVLRKHSLQVANAAGRPFDAIAEELFDDLDFYRLERAALLAGDQPSAQSTAIREDIADQLVEHGVLNLPQKTLEQARAALISEWKWASDNSRDLWQSAAKTILDRILKNTPTGALILLKADLEKAGTLGVGIYYERAVKSVQVLVDMPRELPQTVENWRSTLAVGEQVFWTDPDDGICSGYRTIAEIVSDSGSIESDETIVRLTDNGSMTEALAGDISRLKAGEAIKPTVGVTASNDSPVHTDVVAEFIKRCRDNLWGECEQFPKEDWRYAVANDDTILGYWEWVYNEAAAHDVDVSSLTGKVTT
>CP026108.1|AUT75611.1|224620_225274_-|hypothetical-protein
MNQNQNQAGKVPKIVVKAVKVEAGDANCEYLTVRGENAAIAGYRASTLCNKIDVTLVFQDDRYARITLYPSDQPDIEAKFLSTQKSVRARLSAGFGGTDFEKRWEEGCKVLESDLITFFEKYSLDEPAADGDLFGSGENPDPRVITEDGVIKSASPFSSEKEAAIAAKEFLGPKSKQGICFVIRETAPGAFDWLNMGSRAARATAISQRKLSTGVEA
>CP026108.1|AUT75612.1|225641_226115_-|hypothetical-protein
MSANPSVARSLVQSNAATTAELEELTIMNQNTNEAGKMPQTMSQATKDVSNKNPFDVPAINNEKLALMRHLNLNGDDDADYDKVKELGGFKLDSNGVSSTRAVSVFEYNNERYHVAHATAGLEADVLQAFNSNLWSIRRVEGAESVGQHASSRSLGM
>CP026108.1|AUT75613.1|226767_227634_-|hypothetical-protein
MNKQNDLSTHRFDRANAEFNKFDFPGEVGERFDWVPSDEGNVWSRWVQIERFTGIFPDGENPIRNFTFVVRFGDAADVVEVALAEPLVADQKSNEAGKLQEVHGFLAGNPNFSYYAFSADGYLIAAFDRSDDATTYVERDPRLRVLTRAEVAQQFPRQYQEALYERESAEGKVPEATARQENRESGKSARAISREIHKRLFARYLGSLTLGDAKQILEAIERCWREQMNGNMGSQLKADDKKVQAVNVAVEHMLAHELNYIDDILAEAGFRSDSLAIAANSSARTLDM
>CP026108.1|AUT75614.1|228130_228898_-|AAA-family-ATPase
MMMQQTLTQLRTLKLDGFADGLEEQLTQPGATSLSFEERLSLLVDREASWRDDRRRTRLLKQARLKYPQAAIEDLDTRAGRGVDPRSLTSLALGDWVEAGYSLLISGPTGAGKSWLACALAQYACRRGHSALYLRVPRLGEELRVLHGNGGFTKWLLQVARVDVLLLDDWGMAPLDAMVRNDLLEMIDDRSAGKATIITSQLPIEHWHGWIGDETIADAMLDRLMQRHHRITLTGESLRKSSPKPSVLEPELDQN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026108_1	1.1\|206768\|41\|CP026108\|CRISPRCasFinder	206768-206808	41	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	210110-210150	5	0.878
CP026108_1	1.1\|206768\|41\|CP026108\|CRISPRCasFinder	206768-206808	41	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	212851-212891	5	0.878
CP026108_1	1.1\|206768\|41\|CP026108\|CRISPRCasFinder	206768-206808	41	NZ_CP024940	Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence	201310-201350	5	0.878

1. spacer 1.1|206768|41|CP026108|CRISPRCasFinder matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 5, identity: 0.878

acaaaacgagctttaccgccaactacatgccgcttgacgcg	CRISPR spacer
cacaagcgagctttaccgacaactacatgccgcttgacgcg	Protospacer
   **.************ **********************

2. spacer 1.1|206768|41|CP026108|CRISPRCasFinder matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 5, identity: 0.878

acaaaacgagctttaccgccaactacatgccgcttgacgcg	CRISPR spacer
cacaagcgagctttaccgacaactacatgccgcttgacgcg	Protospacer
   **.************ **********************

3. spacer 1.1|206768|41|CP026108|CRISPRCasFinder matches to NZ_CP024940 (Paraburkholderia hospita strain mHSR1 plasmid pmHSR1_P, complete sequence) position: , mismatch: 5, identity: 0.878

acaaaacgagctttaccgccaactacatgccgcttgacgcg	CRISPR spacer
ccaggacgagctttaccgccaactacctgccgcttaacgcg	Protospacer
 **..********************* ********.*****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

95588 : 166760

Acidithiobacillus_phage(16.67%)

integrase,transposase

attL 92713:92728|attR 148827:148842

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
92713:92728	attL	NA	NA	NA	NA
AUT75518.1\|95588_96506_-\|integrase	integrase	NA	NA	NA	NA
AUT75519.1\|96793_97480_+	hypothetical protein	C7BGE4	Burkholderia_phage	1.3e-52	48.3
AUT75520.1\|97461_97854_-	hypothetical protein	NA	NA	NA	NA
AUT75521.1\|98123_98339_-	hypothetical protein	NA	NA	NA	NA
AUT75522.1\|98417_99236_-	hypothetical protein	NA	NA	NA	NA
AUT76110.1\|99237_100134_-	Ku protein	NA	NA	NA	NA
AUT75523.1\|99885_102177_+	DNA ligase D	A0A291AUV6	Sinorhizobium_phage	6.5e-53	39.9
AUT75524.1\|102651_102861_-	hypothetical protein	NA	NA	NA	NA
AUT75525.1\|103033_104542_-	carnitine dehydratase	NA	NA	NA	NA
AUT75526.1\|104632_105586_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
AUT75527.1\|105607_106522_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
AUT75528.1\|107250_107721_+	N-acetyltransferase	NA	NA	NA	NA
AUT75529.1\|108971_109892_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUT76111.1\|110968_111307_-	hypothetical protein	B6DZU5	Stx2-converting_phage	1.4e-09	45.8
AUT75530.1\|111659_114182_-	hypothetical protein	NA	NA	NA	NA
AUT75531.1\|114722_115904_-	hypothetical protein	NA	NA	NA	NA
AUT75532.1\|118207_119251_+	hypothetical protein	NA	NA	NA	NA
AUT75533.1\|119678_119921_+	hypothetical protein	NA	NA	NA	NA
AUT75534.1\|120030_121290_+	hypothetical protein	NA	NA	NA	NA
AUT75535.1\|121279_121900_+	hypothetical protein	NA	NA	NA	NA
AUT75536.1\|121960_122548_+	hypothetical protein	NA	NA	NA	NA
AUT75537.1\|122576_123149_+	hypothetical protein	NA	NA	NA	NA
AUT75538.1\|123221_130088_+	hypothetical protein	NA	NA	NA	NA
AUT75539.1\|130422_131010_+	hypothetical protein	NA	NA	NA	NA
AUT75540.1\|131131_132341_+\|transposase	IS3 family transposase	A0A1B0Z042	Pseudomonas_phage	6.1e-103	65.1
AUT75541.1\|133288_134314_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.5e-37	33.2
AUT75542.1\|134976_135324_-	NIPSNAP family protein	NA	NA	NA	NA
AUT75543.1\|136013_136232_-	hypothetical protein	NA	NA	NA	NA
AUT75544.1\|136231_137017_-	ATP-binding protein	A0A059NT77	Lactococcus_phage	9.4e-36	38.9
AUT76112.1\|136997_138506_-\|integrase	integrase	U5N3F9	Enterobacteria_phage	1.7e-30	29.0
AUT75545.1\|138738_138954_+	hypothetical protein	NA	NA	NA	NA
AUT75546.1\|140540_141389_-	2-deoxy-D-gluconate 3-dehydrogenase	NA	NA	NA	NA
AUT75547.1\|141512_142445_+	AraC family transcriptional regulator	NA	NA	NA	NA
AUT75548.1\|142471_145261_-	oxidoreductase	NA	NA	NA	NA
AUT75549.1\|145977_146340_-	hypothetical protein	NA	NA	NA	NA
AUT75550.1\|146860_147559_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.5e-37	43.3
AUT75551.1\|147825_149283_+	hypothetical protein	NA	NA	NA	NA
148827:148842	attR	NA	NA	NA	NA
AUT75552.1\|149158_149791_+	hypothetical protein	NA	NA	NA	NA
AUT75553.1\|150014_150344_-	hypothetical protein	NA	NA	NA	NA
AUT75554.1\|151120_151300_-	hypothetical protein	NA	NA	NA	NA
AUT76113.1\|151613_151895_+	hypothetical protein	NA	NA	NA	NA
AUT75555.1\|152207_152969_-	phospholipid phosphatase	NA	NA	NA	NA
AUT75556.1\|152965_154174_-	MFS transporter	NA	NA	NA	NA
AUT75557.1\|157394_159626_-	copper-transporting ATPase	A0A218MNH6	uncultured_virus	3.6e-56	30.3
AUT75558.1\|159646_160303_-	isoprenylcysteine carboxyl methyltransferase	NA	NA	NA	NA
AUT75559.1\|160286_160541_-	hypothetical protein	NA	NA	NA	NA
AUT76114.1\|160566_160983_-	hypothetical protein	NA	NA	NA	NA
AUT75560.1\|161363_162020_+	hypothetical protein	A0A0C5K8T5	Enterococcus_phage	7.6e-07	25.1
AUT75561.1\|162016_162865_+	hypothetical protein	NA	NA	NA	NA
AUT75562.1\|162867_163365_+	hypothetical protein	NA	NA	NA	NA
AUT75563.1\|164092_164380_-	hypothetical protein	NA	NA	NA	NA
AUT75564.1\|164435_165194_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	2.7e-64	51.7
AUT75565.1\|165212_166760_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.1e-128	46.9

DBSCAN-SWA_2

182267 : 233457

Bacillus_phage(28.57%)

integrase,transposase

attL 220251:220265|attR 234000:234014

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT75584.1\|182267_183167_-\|transposase	IS3 family transposase	NA	NA	NA	NA
AUT75585.1\|183163_183550_-\|transposase	IS3 family transposase	NA	NA	NA	NA
AUT76118.1\|183708_183990_-	hypothetical protein	NA	NA	NA	NA
AUT75586.1\|184453_184828_+	cupin	NA	NA	NA	NA
AUT75587.1\|185642_186383_+	beta-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	3.3e-06	38.7
AUT75588.1\|187338_187866_+	hypothetical protein	NA	NA	NA	NA
AUT75589.1\|188255_188684_+	glyoxalase	NA	NA	NA	NA
AUT75590.1\|188856_189198_-	histone family protein nucleoid-structuring protein H-NS	NA	NA	NA	NA
AUT75591.1\|189370_190357_+	histidine biosynthesis protein HisIE	NA	NA	NA	NA
AUT75592.1\|190426_190651_-	hypothetical protein	NA	NA	NA	NA
AUT75593.1\|190719_191025_-	hypothetical protein	NA	NA	NA	NA
AUT75594.1\|191176_191479_+	hypothetical protein	NA	NA	NA	NA
AUT75595.1\|193328_193799_-	hypothetical protein	NA	NA	NA	NA
AUT75596.1\|194353_194545_-	hypothetical protein	NA	NA	NA	NA
AUT75597.1\|195600_196395_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	3.9e-05	32.0
AUT75598.1\|197694_200043_+	hybrid sensor histidine kinase/response regulator	B5LWN8	Feldmannia_species_virus	2.2e-08	27.7
AUT75599.1\|200366_200582_-	hypothetical protein	NA	NA	NA	NA
AUT75600.1\|200666_201080_-	hypothetical protein	NA	NA	NA	NA
AUT75601.1\|201347_201656_-	hypothetical protein	NA	NA	NA	NA
AUT75602.1\|201750_202017_+	CsbD family protein	NA	NA	NA	NA
AUT75603.1\|202071_202446_+	hypothetical protein	NA	NA	NA	NA
AUT75604.1\|205298_206015_-	DDE domain-containing protein	A0A077SL39	Escherichia_phage	1.5e-40	43.8
AUT75605.1\|207268_207541_+	hypothetical protein	NA	NA	NA	NA
AUT75606.1\|208049_210746_+	hypothetical protein	NA	NA	NA	NA
AUT75607.1\|212177_215342_+	hypothetical protein	NA	NA	NA	NA
AUT75608.1\|215316_220770_+	hypothetical protein	NA	NA	NA	NA
220251:220265	attL	NA	NA	NA	NA
AUT75609.1\|220785_222756_+	hypothetical protein	NA	NA	NA	NA
AUT75610.1\|223064_224066_-	hypothetical protein	NA	NA	NA	NA
AUT75611.1\|224620_225274_-	hypothetical protein	NA	NA	NA	NA
AUT75612.1\|225641_226115_-	hypothetical protein	NA	NA	NA	NA
AUT75613.1\|226767_227634_-	hypothetical protein	NA	NA	NA	NA
AUT75614.1\|228130_228898_-	AAA family ATPase	K4HZD4	Acidithiobacillus_phage	8.7e-71	54.2
AUT75615.1\|229552_230557_-\|integrase	integrase	A0A2P1A0S4	Gordonia_phage	3.1e-15	27.7
AUT75616.1\|230553_231495_-\|integrase	integrase	NA	NA	NA	NA
AUT75617.1\|231491_232742_-\|integrase	integrase	A0A1B1P7C7	Bacillus_phage	1.8e-09	30.1
AUT75618.1\|233247_233457_+\|transposase	transposase	NA	NA	NA	NA
234000:234014	attR	NA	NA	NA	NA

DBSCAN-SWA_3

310416 : 362852

uncultured_Caudovirales_phage(16.67%)

integrase,transposase

attL 313335:313349|attR 370061:370075

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT76125.1\|310416_311139_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.0e-41	44.7
AUT75670.1\|312317_313232_-	AraC family transcriptional regulator	A0A291LAM3	Bordetella_phage	2.5e-08	28.1
313335:313349	attL	NA	NA	NA	NA
AUT76126.1\|313566_315324_-	transcriptional regulator	NA	NA	NA	NA
AUT75671.1\|315689_316370_+	DNA-binding response regulator	NA	NA	NA	NA
AUT75672.1\|316397_321389_+	protein kinase	A0A2H4UW49	Bodo_saltans_virus	1.3e-08	27.4
AUT75673.1\|321401_324377_+	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	1.9e-44	35.0
AUT75674.1\|324379_325543_+	hybrid sensor histidine kinase/response regulator	W8CYM9	Bacillus_phage	4.2e-16	41.2
AUT75675.1\|325577_325916_-	hypothetical protein	NA	NA	NA	NA
AUT75676.1\|326517_326961_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA
AUT76127.1\|326980_327814_-	shikimate dehydrogenase	NA	NA	NA	NA
AUT75677.1\|327813_329034_-	formyl-CoA transferase	NA	NA	NA	NA
AUT75678.1\|329033_329492_-	acyl dehydratase	NA	NA	NA	NA
AUT75679.1\|329493_329886_-	glyoxalase	NA	NA	NA	NA
AUT76128.1\|329882_330833_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AUT75680.1\|330928_331834_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUT76129.1\|332132_333563_+\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AUT75681.1\|334213_335347_-	two-component sensor histidine kinase	A0A1B0VMK3	Pseudomonas_phage	9.9e-71	42.3
AUT75682.1\|335656_337486_-	hybrid sensor histidine kinase/response regulator	Q8QKV7	Ectocarpus_siliculosus_virus	3.6e-06	31.3
AUT75683.1\|337757_338210_+	hypothetical protein	NA	NA	NA	NA
AUT75684.1\|338512_338716_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	4.1e-20	70.1
AUT75685.1\|338903_339134_+	hypothetical protein	NA	NA	NA	NA
AUT75686.1\|339210_339786_+	hypothetical protein	NA	NA	NA	NA
AUT75687.1\|341097_342414_-	hypothetical protein	NA	NA	NA	NA
AUT75688.1\|343227_345312_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AUT75689.1\|345301_346198_+	hypothetical protein	A0A2I7SAF7	Vibrio_phage	1.5e-05	32.4
AUT75690.1\|346627_347401_-	hypothetical protein	NA	NA	NA	NA
AUT75691.1\|347508_348132_-	hypothetical protein	NA	NA	NA	NA
AUT75692.1\|348846_349812_-	hypothetical protein	NA	NA	NA	NA
AUT75693.1\|350037_350400_-	hypothetical protein	NA	NA	NA	NA
AUT75694.1\|350415_350859_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
AUT75695.1\|351153_351432_+	DNA-binding protein	B5TA87	Burkholderia_phage	3.3e-12	44.4
AUT75696.1\|351676_352021_-	hypothetical protein	NA	NA	NA	NA
AUT75697.1\|352031_352298_-	DUF1488 domain-containing protein	NA	NA	NA	NA
AUT75698.1\|352513_352843_-	plasmid stabilization protein	NA	NA	NA	NA
AUT76130.1\|352839_353076_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
AUT75699.1\|353286_354591_-\|integrase	integrase	NA	NA	NA	NA
AUT75700.1\|354800_355925_+	ATPase	NA	NA	NA	NA
AUT75701.1\|357281_357644_-	hypothetical protein	NA	NA	NA	NA
AUT75702.1\|357640_359530_-\|integrase	integrase	NA	NA	NA	NA
AUT75703.1\|359526_361407_-\|integrase	integrase	A0A2H4J9J6	uncultured_Caudovirales_phage	1.3e-22	28.5
AUT76131.1\|361403_362852_-\|integrase	site-specific integrase	A0A2H4J165	uncultured_Caudovirales_phage	1.8e-37	29.2
370061:370075	attR	NA	NA	NA	NA

DBSCAN-SWA_4

458648 : 521876

Bacillus_phage(30.0%)

integrase,transposase

attL 476731:476745|attR 524890:524904

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT75762.1\|458648_459986_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	5.6e-65	33.1
AUT75763.1\|461944_462307_+	hypothetical protein	NA	NA	NA	NA
AUT75764.1\|462316_463243_+	hypothetical protein	NA	NA	NA	NA
AUT76137.1\|463392_463581_-	hypothetical protein	NA	NA	NA	NA
AUT75765.1\|463934_464828_+	hypothetical protein	NA	NA	NA	NA
AUT76138.1\|464837_465836_-	hypothetical protein	NA	NA	NA	NA
AUT75766.1\|466175_467438_-	glucosyltransferase	NA	NA	NA	NA
AUT75767.1\|467481_468903_-	hopanoid biosynthesis associated radical SAM protein HpnJ	NA	NA	NA	NA
AUT76139.1\|472557_473073_+	DUF2127 domain-containing protein	NA	NA	NA	NA
AUT75768.1\|473135_473699_-	cytochrome B	NA	NA	NA	NA
AUT75769.1\|473734_474109_-	cytochrome B562	NA	NA	NA	NA
AUT75770.1\|474276_474939_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	9.3e-29	35.0
AUT75771.1\|474938_476285_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	5.6e-12	25.0
AUT75772.1\|476494_476743_-	hypothetical protein	NA	NA	NA	NA
476731:476745	attL	NA	NA	NA	NA
AUT75773.1\|477131_478190_-\|transposase	IS630 family transposase	NA	NA	NA	NA
AUT75774.1\|478268_479177_+	alpha/beta hydrolase	NA	NA	NA	NA
AUT76140.1\|479413_480991_+	alpha-galactosidase	A0A2P0VP48	Tetraselmis_virus	8.4e-36	30.6
AUT75775.1\|481805_482858_-	hypothetical protein	NA	NA	NA	NA
AUT75776.1\|483730_484792_+	hypothetical protein	NA	NA	NA	NA
AUT75777.1\|484839_485565_-	hypothetical protein	NA	NA	NA	NA
AUT76141.1\|485803_485911_-	hypothetical protein	NA	NA	NA	NA
AUT75778.1\|486293_487769_+\|integrase	integrase	NA	NA	NA	NA
AUT75779.1\|488087_490427_-	hypothetical protein	A0A127AWB9	Bacillus_phage	9.6e-20	36.8
AUT75780.1\|490761_490998_-	hypothetical protein	NA	NA	NA	NA
AUT75781.1\|492466_492676_+	hypothetical protein	NA	NA	NA	NA
AUT75782.1\|493137_493914_-	Asp/Glu racemase	NA	NA	NA	NA
AUT75783.1\|493910_495155_-	amino acid dehydrogenase	NA	NA	NA	NA
AUT75784.1\|495414_496608_+	branched chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUT75785.1\|496633_497533_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
AUT75786.1\|497536_499351_+	ABC transporter	A0A2H4PQG7	Staphylococcus_phage	2.4e-10	22.7
AUT75787.1\|499338_500076_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-17	27.9
AUT75788.1\|500140_500347_+	hypothetical protein	NA	NA	NA	NA
AUT75789.1\|501052_501466_+	hypothetical protein	NA	NA	NA	NA
AUT75790.1\|501504_501996_-	hypothetical protein	NA	NA	NA	NA
AUT75791.1\|502115_503300_-	hypothetical protein	NA	NA	NA	NA
AUT75792.1\|503666_504101_+	DUF29 domain-containing protein	A0JC30	Ralstonia_phage	5.2e-36	51.7
AUT75793.1\|504413_504638_+	hypothetical protein	NA	NA	NA	NA
AUT75794.1\|505426_506539_+	poly-gamma-glutamate biosynthesis protein	S4VS02	Pandoravirus	2.1e-110	56.2
AUT75795.1\|506535_507165_-	hydrolase	NA	NA	NA	NA
AUT75796.1\|507273_507597_-	four-helix bundle copper-binding protein	NA	NA	NA	NA
AUT76142.1\|508732_509194_+	CHRD domain-containing protein	NA	NA	NA	NA
AUT75797.1\|509238_509931_-	hydrogenase	NA	NA	NA	NA
AUT75798.1\|510268_510607_+	hypothetical protein	NA	NA	NA	NA
AUT75799.1\|510871_512659_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
AUT75800.1\|512834_513089_+	antitoxin of toxin-antitoxin stability system	NA	NA	NA	NA
AUT75801.1\|513076_513499_+	PIN domain-containing protein	NA	NA	NA	NA
AUT75802.1\|513813_514086_-	hypothetical protein	NA	NA	NA	NA
AUT75803.1\|514235_514565_+	hypothetical protein	NA	NA	NA	NA
AUT75804.1\|516222_516546_-	hypothetical protein	NA	NA	NA	NA
AUT75805.1\|516545_516998_-	hypothetical protein	NA	NA	NA	NA
AUT75806.1\|517122_518046_-\|integrase	integrase	NA	NA	NA	NA
AUT75807.1\|518564_519224_+\|integrase	integrase	NA	NA	NA	NA
AUT75808.1\|519331_519580_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AUT75809.1\|519573_519894_+	growth inhibitor PemK	NA	NA	NA	NA
AUT75810.1\|520145_520514_+	hypothetical protein	NA	NA	NA	NA
AUT75811.1\|520549_520777_+	hypothetical protein	NA	NA	NA	NA
AUT75812.1\|520850_521876_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.5e-36	32.9
524890:524904	attR	NA	NA	NA	NA

DBSCAN-SWA_5

529275 : 571891

Gordonia_phage(25.0%)

integrase,transposase

attL 525410:525424|attR 533992:534006

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
525410:525424	attL	NA	NA	NA	NA
AUT75816.1\|529275_530526_+\|integrase	integrase	A0A1B1P7C7	Bacillus_phage	9.1e-09	29.5
AUT75817.1\|530522_531464_+\|integrase	integrase	NA	NA	NA	NA
AUT75818.1\|531460_532465_+\|integrase	integrase	A0A2P1A0S4	Gordonia_phage	3.1e-15	27.7
AUT75819.1\|532915_533125_+\|transposase	transposase	NA	NA	NA	NA
AUT75820.1\|533313_533766_+	hypothetical protein	NA	NA	NA	NA
AUT75821.1\|533816_534047_+	hypothetical protein	NA	NA	NA	NA
533992:534006	attR	NA	NA	NA	NA
AUT75822.1\|534828_536166_-\|transposase	IS4 family transposase	Q9JMP3	Wolbachia_phage	5.6e-65	33.1
AUT76144.1\|538969_539989_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AUT75823.1\|540280_540772_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AUT75824.1\|540711_541125_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
AUT75825.1\|541215_542856_+\|transposase	IS66 family transposase	S5VTD3	Leptospira_phage	4.9e-63	31.6
AUT75826.1\|542978_543299_+	hypothetical protein	NA	NA	NA	NA
AUT75827.1\|544501_544942_+	ester cyclase	NA	NA	NA	NA
AUT75828.1\|545192_546230_+	isocitrate dehydrogenase	NA	NA	NA	NA
AUT75829.1\|546703_548167_-\|transposase	transposase	NA	NA	NA	NA
AUT76145.1\|548383_548626_+	post-segregation antitoxin CcdA	NA	NA	NA	NA
AUT75830.1\|548625_548943_+	cobalamin biosynthesis protein CbiX	NA	NA	NA	NA
AUT75831.1\|549360_550368_-	hypothetical protein	NA	NA	NA	NA
AUT75832.1\|550386_553065_-	ATP-dependent helicase	A0A1B3B0M9	Gordonia_phage	3.2e-35	29.0
AUT75833.1\|553309_554329_-	YecA family protein	NA	NA	NA	NA
AUT76146.1\|555187_555940_-	hypothetical protein	C7BGE4	Burkholderia_phage	7.5e-51	47.9
AUT75834.1\|556973_557225_+	hypothetical protein	NA	NA	NA	NA
AUT75835.1\|557477_557948_+	isoprenylcysteine carboxylmethyltransferase family protein	NA	NA	NA	NA
AUT75836.1\|559510_560071_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUT75837.1\|560333_560531_-	hypothetical protein	NA	NA	NA	NA
AUT75838.1\|561029_561320_+	hypothetical protein	NA	NA	NA	NA
AUT76147.1\|561844_563374_-	inorganic triphosphatase	NA	NA	NA	NA
AUT75839.1\|563887_564361_+	photosystem reaction center subunit H	NA	NA	NA	NA
AUT75840.1\|564733_564958_+	hypothetical protein	NA	NA	NA	NA
AUT76148.1\|564939_565533_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUT75841.1\|566744_566963_-	hypothetical protein	NA	NA	NA	NA
AUT75842.1\|567207_567429_-	hypothetical protein	NA	NA	NA	NA
AUT76149.1\|567843_568233_-	photosystem reaction center subunit H	NA	NA	NA	NA
AUT75843.1\|568517_568706_+	CsbD family protein	NA	NA	NA	NA
AUT75844.1\|568771_569836_+	glycosyl transferase	A0A1D8KU90	Synechococcus_phage	3.7e-11	28.0
AUT75845.1\|569905_570283_-	hypothetical protein	NA	NA	NA	NA
AUT75846.1\|570370_570754_-	hypothetical protein	NA	NA	NA	NA
AUT76150.1\|571225_571891_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-43	46.2

DBSCAN-SWA_6

616897 : 679935

Leptospira_phage(21.43%)

integrase,transposase

attL 618047:618063|attR 679711:679727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT76157.1\|616897_618250_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	3.7e-40	32.6
618047:618063	attL	NA	NA	NA	NA
AUT75868.1\|619319_620855_+	hypothetical protein	NA	NA	NA	NA
AUT75869.1\|620955_621288_+	hypothetical protein	NA	NA	NA	NA
AUT75870.1\|622067_622340_+	hypothetical protein	NA	NA	NA	NA
AUT75871.1\|622459_624703_-	hypothetical protein	NA	NA	NA	NA
AUT75872.1\|624734_626012_-	PA-phosphatase	NA	NA	NA	NA
AUT75873.1\|626059_627844_-	hypothetical protein	NA	NA	NA	NA
AUT76158.1\|628175_629222_-	cyclic nucleotide-binding protein	NA	NA	NA	NA
AUT75874.1\|630752_632312_-	signaling protein	A0A1B1IT49	uncultured_Mediterranean_phage	5.4e-11	24.5
AUT75875.1\|633557_634991_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	6.1e-17	26.7
AUT76159.1\|635692_635974_-	hypothetical protein	NA	NA	NA	NA
AUT76160.1\|637076_637406_+	hypothetical protein	NA	NA	NA	NA
AUT75876.1\|637515_637893_-	hypothetical protein	NA	NA	NA	NA
AUT76161.1\|638467_639427_+	poly(3-hydroxybutyrate) depolymerase	NA	NA	NA	NA
AUT75877.1\|640899_642606_-	tannase/feruloyl esterase family alpha/beta hydrolase	NA	NA	NA	NA
AUT75878.1\|642616_643759_-	porin	NA	NA	NA	NA
AUT75879.1\|643802_645011_-	3-(3-hydroxy-phenyl)propionate transporter MhpT	NA	NA	NA	NA
AUT75880.1\|645049_645451_-	hypothetical protein	NA	NA	NA	NA
AUT75881.1\|645483_646320_+	p-hydroxycinnamoyl CoA hydratase/lyase	NA	NA	NA	NA
AUT75882.1\|646383_647835_+	salicylaldehyde dehydrogenase	NA	NA	NA	NA
AUT75883.1\|648007_649900_+	feruloyl-CoA synthase	NA	NA	NA	NA
AUT76162.1\|649975_650491_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUT75884.1\|651193_652399_-\|transposase	IS91 family transposase	NA	NA	NA	NA
AUT75885.1\|652407_653286_-\|integrase	integrase	A0A1P8DJJ6	Virus_Rctr41k	4.6e-23	26.8
AUT75886.1\|653592_654561_+\|integrase	integrase	A0A1L4BKH1	Thermus_phage	2.7e-08	30.4
AUT75887.1\|654557_655499_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-07	25.7
AUT75888.1\|655495_656500_+\|integrase	integrase	S5W9T9	Leptospira_phage	9.5e-09	27.6
AUT75889.1\|656607_656823_-	hypothetical protein	NA	NA	NA	NA
AUT76163.1\|656935_657964_-\|integrase	integrase	A0A2D2W4Z2	Ralstonia_phage	1.7e-08	24.6
AUT75890.1\|657963_658938_-\|integrase	integrase	NA	NA	NA	NA
AUT75891.1\|658934_660158_-\|integrase	integrase	S5W9T9	Leptospira_phage	1.2e-10	29.4
AUT75892.1\|663771_664083_+	hypothetical protein	NA	NA	NA	NA
AUT75893.1\|664209_664794_-	hypothetical protein	NA	NA	NA	NA
AUT75894.1\|664981_665182_+	hypothetical protein	NA	NA	NA	NA
AUT75895.1\|665264_665615_-	hypothetical protein	NA	NA	NA	NA
AUT75896.1\|666343_666643_-	hypothetical protein	NA	NA	NA	NA
AUT75897.1\|666655_667738_-\|transposase	IS630 family transposase	NA	NA	NA	NA
AUT75898.1\|667996_669952_+	hypothetical protein	Q8QNA2	Ectocarpus_siliculosus_virus	9.2e-08	26.5
AUT75899.1\|670096_672043_+	hypothetical protein	Q8QNA2	Ectocarpus_siliculosus_virus	8.3e-09	27.9
AUT75900.1\|672081_672786_-	hypothetical protein	NA	NA	NA	NA
AUT75901.1\|672801_673377_-	hypothetical protein	NA	NA	NA	NA
AUT75902.1\|675247_676495_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	1.6e-45	32.5
AUT75903.1\|676491_677358_+	AAA family ATPase	U5N3V8	Enterobacteria_phage	3.0e-51	45.9
AUT75904.1\|677493_678054_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUT75905.1\|678306_678504_-	hypothetical protein	NA	NA	NA	NA
AUT75906.1\|678909_679935_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.5e-37	33.2
679711:679727	attR	NA	NA	NA	NA

DBSCAN-SWA_7

895645 : 954434

uncultured_Caudovirales_phage(50.0%)

integrase,tRNA,transposase

attL 950884:950901|attR 955893:955910

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT76049.1\|895645_896656_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
AUT76184.1\|896786_897212_-	universal stress protein	NA	NA	NA	NA
AUT76050.1\|898273_898651_+	hypothetical protein	G3ENA3	Psychrobacter_phage	7.7e-12	61.1
AUT76051.1\|898993_899398_+	hypothetical protein	NA	NA	NA	NA
AUT76052.1\|899489_899732_+	hypothetical protein	NA	NA	NA	NA
AUT76053.1\|900418_901231_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA
AUT76054.1\|901473_901914_-	hypothetical protein	NA	NA	NA	NA
AUT76055.1\|901923_903354_-	hypothetical protein	NA	NA	NA	NA
AUT76056.1\|903678_904146_-	hypothetical protein	NA	NA	NA	NA
AUT76057.1\|905054_905318_+	hypothetical protein	NA	NA	NA	NA
AUT76058.1\|905375_905588_+	hypothetical protein	NA	NA	NA	NA
AUT76059.1\|905974_907804_+	ATP-dependent helicase	NA	NA	NA	NA
AUT76060.1\|908170_909103_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
AUT76061.1\|909665_910661_-	hypothetical protein	NA	NA	NA	NA
AUT76185.1\|911486_912614_-	chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	3.6e-12	36.0
AUT76062.1\|913365_913764_-	hypothetical protein	NA	NA	NA	NA
AUT76063.1\|913797_914574_-	1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase	W8CYX9	Bacillus_phage	2.2e-05	38.8
AUT76064.1\|915632_916121_-	benzoate 1,2-dioxygenase small subunit	NA	NA	NA	NA
AUT76065.1\|916117_917461_-	benzoate 1,2-dioxygenase large subunit	NA	NA	NA	NA
AUT76066.1\|917588_918524_-	catechol 1,2-dioxygenase	NA	NA	NA	NA
AUT76067.1\|918698_919628_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	7.7e-13	25.3
AUT76068.1\|919612_919891_+	muconolactone delta-isomerase	NA	NA	NA	NA
AUT76069.1\|919908_921111_+	benzoate transporter	NA	NA	NA	NA
AUT76070.1\|921539_922076_+	alkyl hydroperoxide reductase	NA	NA	NA	NA
AUT76071.1\|922334_922685_-	RND transporter MFP subunit	NA	NA	NA	NA
AUT76072.1\|924554_924980_-	hypothetical protein	NA	NA	NA	NA
AUT76073.1\|924957_925233_-	hypothetical protein	NA	NA	NA	NA
AUT76074.1\|925275_925539_-	hypothetical protein	NA	NA	NA	NA
AUT76075.1\|926255_926711_+	DNA-binding protein	NA	NA	NA	NA
AUT76186.1\|927048_927333_-	hypothetical protein	NA	NA	NA	NA
AUT76187.1\|927567_928509_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA
AUT76188.1\|929166_929811_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUT76076.1\|930689_931241_-	hypothetical protein	NA	NA	NA	NA
AUT76077.1\|932432_932744_+	hypothetical protein	NA	NA	NA	NA
AUT76078.1\|932797_933034_+	hypothetical protein	NA	NA	NA	NA
AUT76079.1\|933104_934091_-	histidine biosynthesis protein HisIE	NA	NA	NA	NA
AUT76080.1\|934965_935832_-	hypothetical protein	NA	NA	NA	NA
AUT76081.1\|935985_938493_+	DNA ligase D	A0A068CDF3	Rhizobium_phage	6.6e-51	37.6
AUT76082.1\|938741_938933_+	hypothetical protein	NA	NA	NA	NA
AUT76083.1\|939085_939286_+	hypothetical protein	NA	NA	NA	NA
AUT76084.1\|939415_939739_-	histone family protein nucleoid-structuring protein H-NS	NA	NA	NA	NA
AUT76085.1\|941628_942702_+	hypothetical protein	NA	NA	NA	NA
AUT76086.1\|942637_943000_-	hypothetical protein	NA	NA	NA	NA
AUT76087.1\|942996_944880_-\|integrase	integrase	A0A2H4J185	uncultured_Caudovirales_phage	1.2e-36	26.6
AUT76088.1\|944876_946757_-\|integrase	integrase	A0A2H4J9J6	uncultured_Caudovirales_phage	3.5e-20	25.9
AUT76190.1\|946753_948202_-\|integrase	site-specific integrase	A0A2H4J165	uncultured_Caudovirales_phage	8.3e-38	29.5
AUT76189.1\|948448_949435_+\|integrase	integrase catalytic subunit	NA	NA	NA	NA
AUT76089.1\|949459_950437_+	hypothetical protein	NA	NA	NA	NA
AUT76090.1\|950528_951044_+	hypothetical protein	NA	NA	NA	NA
950884:950901	attL	NA	NA	NA	NA
AUT76091.1\|951801_952437_+	hypothetical protein	NA	NA	NA	NA
AUT76092.1\|952433_954434_+\|integrase	integrase	NA	NA	NA	NA
955893:955910	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP026107

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026107_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026107_1

1670525-1670611

Orphan

Consensus_repeat	Method
TAACGCGGATGCCAGCGCAGAGGCAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026107_1

>merge|CP026107|1|1670525-1670611|CRISPRCasFinder
TAACGCGGATGCCAGCGCAGAGGCAAAAGCACAGGGGCGACGCTTGAACAGCAAACACCGTAACGCGGATGCCAGCGCCGAGGCAAA

>CP026107|1|1|1670525-1670611|CRISPRCasFinder
TAACGCGGATGCCAGCGCAGAGGCAAA	AGCACAGGGGCGACGCTTGAACAGCAAACACCG
TAACGCGGATGCCAGCGCCGAGGCAAA

Protein	Signature genes	Signature genes Name	Protein_function
CP026107.1\|AUT74581.1\|1674034_1674649_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
CP026107.1\|AUT74571.1\|1659590_1660904_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
CP026107.1\|AUT74577.1\|1668823_1669708_+\|DNA-binding-transcriptional-regulator-KdgR	unknown	unknown	gnl\|CDD\|185046
CP026107.1\|AUT74572.1\|1662414_1663395_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP026107.1\|AUT74574.1\|1665756_1666776_-\|2-keto-3-deoxygluconate-transporter	unknown	unknown	gnl\|CDD\|235384
CP026107.1\|AUT74576.1\|1667928_1668726_+\|2-deoxy-D-gluconate-3-dehydrogenase	unknown	unknown	gnl\|CDD\|188170
CP026107.1\|AUT74578.1\|1670697_1671594_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176168
CP026107.1\|AUT74587.1\|1680344_1680581_-\|DUF1427-domain-containing-protein	unknown	unknown	gnl\|CDD\|369277
CP026107.1\|AUT74570.1\|1658843_1659575_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP026107.1\|AUT74583.1\|1676376_1677066_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370676
CP026107.1\|AUT75346.1\|1660978_1661737_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP026107.1\|AUT74573.1\|1664419_1665634_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340882
CP026107.1\|AUT74582.1\|1674773_1676102_+\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
CP026107.1\|AUT75347.1\|1661740_1662268_-\|cupin	unknown	unknown	gnl\|CDD\|380436
CP026107.1\|AUT74586.1\|1679613_1680363_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
CP026107.1\|AUT74585.1\|1678619_1679555_-\|glyoxalase	unknown	unknown	unknown
CP026107.1\|AUT74580.1\|1672619_1674038_+\|3-isopropylmalate-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|183543
CP026107.1\|AUT74575.1\|1667057_1667894_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|179169
CP026107.1\|AUT74584.1\|1677150_1678623_-\|alginate-export-family-protein	unknown	unknown	gnl\|CDD\|372583
CP026107.1\|AUT74579.1\|1671713_1672592_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
CP026107.1\|AUT74581.1\|1674034_1674649_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.199e-90
CP026107.1\|AUT74571.1\|1659590_1660904_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.84116e-97
CP026107.1\|AUT74577.1\|1668823_1669708_+\|DNA-binding-transcriptional-regulator-KdgR	gnl\|CDD\|185046	PRK15090, PRK15090, DNA-binding transcriptional regulator KdgR; Provisional.	5.60831e-170
CP026107.1\|AUT74572.1\|1662414_1663395_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.25459e-69
CP026107.1\|AUT74574.1\|1665756_1666776_-\|2-keto-3-deoxygluconate-transporter	gnl\|CDD\|235384	PRK05274, PRK05274, 2-keto-3-deoxygluconate permease; Provisional.	1.8421e-149
CP026107.1\|AUT74576.1\|1667928_1668726_+\|2-deoxy-D-gluconate-3-dehydrogenase	gnl\|CDD\|188170	TIGR01832, 2-dehydro-3-deoxy-D-gluconate_5-dehydrogenase, 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	2.2892e-142
CP026107.1\|AUT74578.1\|1670697_1671594_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176168	cd08479, PBP2_CrgA_like_9, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 9. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.66344e-103
CP026107.1\|AUT74587.1\|1680344_1680581_-\|DUF1427-domain-containing-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	2.44044e-18
CP026107.1\|AUT74570.1\|1658843_1659575_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.66262e-70
CP026107.1\|AUT74583.1\|1676376_1677066_+\|hypothetical-protein	gnl\|CDD\|370676	pfam09770, PAT1, Topoisomerase II-associated protein PAT1. Members of this family are necessary for accurate chromosome transmission during cell division.	0.00120303
CP026107.1\|AUT75346.1\|1660978_1661737_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.49714e-74
CP026107.1\|AUT74573.1\|1664419_1665634_+\|MFS-transporter	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.8654e-58
CP026107.1\|AUT74582.1\|1674773_1676102_+\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
CP026107.1\|AUT75347.1\|1661740_1662268_-\|cupin	gnl\|CDD\|380436	cd20302, cupin_DAD, 2,4'-Dihydroxyacetophenone dioxygenase (DAD), cupin domain. 2,4'-Dihydroxyacetophenone dioxygenase (DAD) catalyzes the oxidation of 2,4'-dihydroxyacetophenone to 4-hydroxybenzoate and formate as part of the 4-hydroxyacetophenone catabolic pathway. This enzyme is a homo-tetramer containing one iron per molecule of enzyme. This enzyme is an unusual dioxygenase in that it cleaves a C-C bond in a substituent of the aromatic ring rather than within the ring itself. As a bacterial dioxygenase, DAD plays an important environmental role in the aerobic catabolism of aromatic compounds; expression of this enzyme in appropriately engineered microorganisms has the potential to use these aromatic pollutants as a carbon source and thus remove them from the environment. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	5.59067e-57
CP026107.1\|AUT74586.1\|1679613_1680363_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	1.1991e-25
CP026107.1\|AUT74580.1\|1672619_1674038_+\|3-isopropylmalate-dehydratase-large-subunit	gnl\|CDD\|183543	PRK12466, PRK12466, 3-isopropylmalate dehydratase large subunit.	0
CP026107.1\|AUT74575.1\|1667057_1667894_+\|5-dehydro-4-deoxy-D-glucuronate-isomerase	gnl\|CDD\|179169	PRK00924, PRK00924, 5-keto-4-deoxyuronate isomerase; Provisional.	0
CP026107.1\|AUT74584.1\|1677150_1678623_-\|alginate-export-family-protein	gnl\|CDD\|372583	pfam13372, Alginate_exp, Alginate export. This domain forms an 18-stranded beta-barrel pore which is likely to act as an alginate export channel.	2.67699e-171
CP026107.1\|AUT74579.1\|1671713_1672592_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	5.69306e-27

>CP026107.1|AUT74577.1|1668823_1669708_+|DNA-binding-transcriptional-regulator-KdgR
MAAIDKLKTTATAPRKRAAAPLTSDVDAADKGESLSSIARVFAILGAIGDSGQIGISELSQRLSLSKTTVHRVLQTLKALGYVTQEVETERYHLTIRLFELGAKALESVDLVREADIEMRRIAGATREAVHLGTFDEDAIIYIHKIDADYGLRMQSRIGRRNPLHSTAIGKVLLAWMEPAEAREVLSHIEFRKSTAKTLASADAVMSILPQVRAQGYGEDIEEQEEGLRCLAVPVFDRFGRVIAGLSVSFPTMRCGADTKLHYVALLKAAGAAVSARLGYREPTQEAAEITHPG
>CP026107.1|AUT74576.1|1667928_1668726_+|2-deoxy-D-gluconate-3-dehydrogenase
MTSHPSHPSHPSHPPHPFDLGGKVALVTGSNTGLGAGMARALAAAGCDIVGVSRSDDSDTAQQVKALGRRYVGVSADLSNIAPIDDIVRAALEACGRIDVLVNNAGIIRRADALTFSEDDWDAVMNVNLKSAFFLAQAVARHFVEQDKRGKIINVASMLSFQGGIRVASYTSSKSGMLGLTRLLANEWAARGINVNAIAPGYMATSNTAALRDDEQRNSEIVARIPAGRWGTPDDLAGPVVFLASVASDYVHGHTLAVDGGWLAR
>CP026107.1|AUT74575.1|1667057_1667894_+|5-dehydro-4-deoxy-D-glucuronate-isomerase
MEVRQSINSEYAKTLDTTGLRKEFLVEKVFEPDALALTYSHIDRIIVGGAFPQTRAVEVPSSLGKSIGVSYLLERRELGAINIGGDGWVEADGKRFAVRNEEAIFVGKGTQSLTFGSDDPAHPAKFYLNCAPAQATFPTRTITLAEASPQTLGDPATSNRRTIYKFIVPEVLPTCQLSMGMTKLEPGSLWNTMPCHTHERRMEVYFYFNVADDAAVFHMLGEPQETRHILVHNEQAVISPSWSIHSGVGTRAYTFIWGMVGENQVFSDMDHLAVRDLR
>CP026107.1|AUT74574.1|1665756_1666776_-|2-keto-3-deoxygluconate-transporter
MKLKKAIDRVPGGLMLIPLLLGACVHSFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGATIDLRATGTVLRKSGTLLVTKMLVAWLATIIASSLLPIDGIKTGLFAGLSVLAITTSMDMTNGGLYAAVMQQYGTKEEAGAFVLMSIESGPLVSMIILGATGVAFFEPRLFVGAVLPFVIGFTLGNLDSALRELFGRCVVPLIPFFGFALGNGIDLNVIVKSGIPGVLLGLGVIVITGIPLILADRYIAGGNGAAGLAASSTAGAAVANPSIIGEMIPHFKPVVPAATAMVATACLVTAILVPILTATWSKRARLKAGESARMEEDDAGPLPQPLGAHE
>CP026107.1|AUT74573.1|1664419_1665634_+|MFS-transporter
MSSSSSTLARSDTATGLTRGLIALFAFSCGAIVANLYYAQPITELIAPSIHMSSGMASLIVSLTQIGYALGLFFLVPLGDLLENRKLMIATALVSIASLAAASFTHAPGAFLAVSLLIGFSSVAVQILIPLAAHLAPDETRGRVVGTIMGGLLLGILLSRPISSIVAGHFGWRVVFGSAAVLMAIVTTVLALTIPKRQPSHQATYPQLIASLGHLIRTMPVLRHRALYQALMFGSFSLFWTAVPVELTRHYGLSQTAIAVFALVGAIGATSAPIAGRLADAGHTVRATLIALVVGALAYTPGLLHPAWGVGGLVVTGVVLDFAVQMNMVLGQREIYALHAASRNRLNALYMTSIFVGGAIGSALASPLYDHGGWTLVASVATAFPVIALAHYLVIGRPHAAGHA
>CP026107.1|AUT74572.1|1662414_1663395_-|LysR-family-transcriptional-regulator
MQTSVAWSAIVFVGIIARMDKLLALNTLLEVADAGGFAKAAQRLGVATSSVTRLMDALETSLGTALLTRTPRKVSLTDAGTAYVEQISKVLDDLAEADESILDSGAAPVGALRITVPSAYNRVQLAPHLAAFLAEYPRVALDVVVADHYADLALDRIDVAVRIGMLTRDPNLVVKKLADNPRYLVASHDYLQRAGTPPTPAALAEHECLRIAYGGSYRARQVWTFSRGAEHERIDVRGRLISNSLEMLLEAVLAGQGLALLPDWLVNHEINAGRLMRLFADCNVTPQNDEAVVYAAYLPNRRHSSKVKALLRFLETRVGGATESAA
>CP026107.1|AUT75347.1|1661740_1662268_-|cupin
MTAPTNGVDAMTPYQLPNPPEALREIVVKSAIPQDERVWVPQGENVSFRPLCLNVSSGYWMNLLRVRKSGVLSRHRHPQAVHGMVLKGRWRYLEHDWIATEGSYVFEPPGETHTLYVPEDVEEMITYFQVNGVMYYCDPYGNYTGYEDVFTKLDMCRAHYERVGLGANYVDQFVR
>CP026107.1|AUT75346.1|1660978_1661737_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNAPFELRRASYDFTGAVAVVTGGARGIGAEIVRRLVDCGASVAVWDRDTDASFADSPRIACFAVDIVDITSVERAAQATLERFGGVNVLVNNAGYAGPTMPLDEYDPAEWSRIVDVNLKGTFNVCRQLVPTLRRARDARVVNIASLAGKEGTPNASAYSAAKAGVLALTKSLGKELAQGNVLVNAIAPAAVRTSLLEQMSPAHVQTMIDKSPMRRLGEPDEVAELTLWLCSSSCTFSTGAVFDLSGGRATY
>CP026107.1|AUT74571.1|1659590_1660904_-|MFS-transporter
MQAKSPRLRRIQWIALTFLTLAGIVNYLDRSTLSIANHSVSGELGLSASQMGLLLSAFSFAYAFSQLPVGAMLDRFGARVMLGLGMFVWSCAQLCGGLVHTLPQFLAARIALGIGEAPQFPAGAKVVSEWYALRERGRPTGIFTTSSTIGPALAPPILTVLLLSFGWRWMFVVMGVLGIAVSIGWYLIYRNRADITLEPNEVKHLTEEEPLARAERKMTFAEWRGLFGNATTWGMIFGFMGVIYMVWLYLTWLPAYLEHERHLTIAKTGWVVSIPYIFGTLGMLSSGFVADGLMARGMAPIRSRKWPICCGLIGAAVFTVPAAFTPTLTLAIVYLSLAMYFVNLASGAAWALVSVAAPRHLVASLGSIQNFGGYFGGSFAPFITGVVVDKTHSFVNAFLISAGVAFAAALVYMFVVRVPVAERADEGATAETRMTHS
>CP026107.1|AUT74570.1|1658843_1659575_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTFQHDLFAGKTAVVTGGTQGIGAGIARQLAALGARVIAAGLAPTDEQRSALASDGIEAMLLDVASKESVDALFASLTSLDMLVNCAGVIRRGDELDPEVFAQVIDVNLTGTMRACAAARPLLRAQGGAIVNTASMLSFFGGGLVPAYSASKGGVAQLTKSLAIAYAPDRIRVNAVAPGWIATPLTQSLQQNDERSKAILDRTPLGRWGSPDDIGPAVAFLCSPGASFITGTVLPVDGGYLVA
>CP026107.1|AUT74578.1|1670697_1671594_-|LysR-family-transcriptional-regulator
MDGFSDLNLFALVARHRNLAAAARELGVTPPAVSKRLAQLERRLGVRLMNRTTRRLSLTPEGELYLANGSRILDELQELEQLVTRSRAEPAGLLRVNASFGFGRARIAPAISDFVARFPSMKIQLHLTDRPMSLQEEGFDLGIRFGEVPDARVNARLLMKNRRIVCASPDYVKRHGMPLLPHDLTRHACIVLRENESAYGTWHFSRGKRVETVKVDGPLASNDGSAVLHWALEGRGVVVRSQWEIGEYLERGALVPLLVDWALPSADIHAIYLERNQLSVKLRTFVDFLGEYLRASPR
>CP026107.1|AUT74579.1|1671713_1672592_+|alpha/beta-hydrolase
MFEGFTDASAHIDGINIHAIKGGTGPALLLLHGHPQTHAIWHKVAPTLAAHFTVIAADLRGYGDSGKPQGAADHANYSKRRMALDQVELMRAHGFASFAVIGHDRGGRVAARMALDHPDAVERLVTLDVAPTLAMYEKTSFDFARAYWHWFMLVRPAPFPETLIRADPDLYLKQTIGARSAGLAPFTTEAYADYLRCLSDPATAHGICEDYRASVTIDLEHDRATLAAREQITCDFLALWGAQGVIEQCFEPLAEWRPYAPQVQGEALPCGHYIPEEAPQLFLDRVLPFLGT
>CP026107.1|AUT74580.1|1672619_1674038_+|3-isopropylmalate-dehydratase-large-subunit
MSKRTLYQKLVESHLVSRIDEQNVLLYVDLHLMNEYTSPQAFSALEARGRAVRRPRQQLAVVSHIIPTHAETPRVIRDAASLVLAQNLGRNCERAGIRLLAANDPMQGIEHIVAPEMGLVRPGMVVLCGDSHTTTYGALGALGFGIGTSEVEHVLATQTLVYRLAQTMRIVIDGALPYGTSSKDVVIWLLSRIGAQGARGYAVEFAGSTIASLSAEARMTLCNMTVEAGARAALIAPDATTFDYVHAHANTLDETAWQTALDDWHTLRSDDDAHFDAEHRFDARDIAPFVTWGTSPDQAIAIDARIPGEAEQPSREAAASLRRALDYMGLQAQQPLAGTRIDRVFIGSCTNGRIEDLRSVAQIVRGKHVAQGVRAMVVPGSGSVRRAAEQEGIAQTLIDAGFEWREPGCSMCLAMNDDMLDEGERCASTTNRNFEGRQGRGGRTHLMSPVMAAAAALTGCITDVRTLEIHAR
>CP026107.1|AUT74581.1|1674034_1674649_+|3-isopropylmalate-dehydratase-small-subunit
MNRLTIIEGTAAPLPIDNLDTDQIMPKQFLRIVDKAGLADGLLYDLRFDAQGVPRANCVFNQRAWDGARILIGGANFGCGSSREHAVWGLQQYGFQAVIAPSFAEIFYSNAMNNRLLLVQLEREAIDALVQASTQTPESKLRIDLERQTVTAAHGQTYTYPLGARHKQMVIEGMDTIDLTLASLHDIEAFERAHFARRAWAQVL
>CP026107.1|AUT74582.1|1674773_1676102_+|dicarboxylate/amino-acid:cation-symporter
MKRKPFYKVLYVQVLFAIAAGVLLGHFAPHEAVALKPLGDMFVKLVRMVIGPVIFCTVVTGIAGMQDMKKVGRVGGKALLYFEAASTLALAIGLVAAHVLKPGSGFNVDPATLDASAVSSYAAQAAHGDGIVAFVMHAIPDTFAGAMTQGDILPVLVIAMLFGSALAVLGDKAAPVTNLVETLSKAFFRIVHMITSLAPIGAFGAMAFTIGRYGIVSLLPMLKLIGSFYLTAALFVAIVLGVVARMCGFSLWRFLVYIRDELLIVLGTSTSEAALPQLMEKLERLGCPRGVVGLVVPTGYSFNLDGTNIYMTLAVLFLAQATNTHLTVTQEITLLLVTMLTSKGSTGVTGAGFITLAASFSVVPTVPVAAMVLILGIDRFMSECRALTNIVGNGVATIVVSAWEGGLDRDALAAALGRRADAHVDPHFGTSIAAQSTDIEKA
>CP026107.1|AUT74583.1|1676376_1677066_+|hypothetical-protein
MRISTLLGSAALTVAFGPTLLSAAAWADGPRSAYDNGGANEASLDPGEEQMTADEENKARLKDLSDAYHSGYNARAKEDADTYASLREQLKRTSKANVQQPPPLPSDMPADDGAQVRRVNQPRVAQRQLQAQAAYDDDDAAPLQYAPAPPPRPRYRPAPVVYTQPPMYEGPSPEEMQTVVFQPYQPPPVQYVPVYHQPVYVSQPVMPMQYAAQVPAYRPGYYGYRGYGW
>CP026107.1|AUT74584.1|1677150_1678623_-|alginate-export-family-protein
MTVRRSIKSAKRAAACAALAVCSLADGANALAADTAETGTAETSAADASQCAAKRPSPLSFNRWQEDWSVLALPCVPRKPFDALKYIPLGGDPSTYLSLGATLRERFELNNTPLFGLGSARPDSYVIQRAQVHADAHIGEHVQAFFQLEDARPFGKDSVTPVDKNPLDIEQAFVAFVYGVGGGTFKARVGRQEMAFDLQRFVSVRDGPNVRQAYDALWADYEIDKWRFIGYLTQPVQYRDVTAFDDVSNRHLTFSGVRVERANTGPGDLSAYWSRYNRDNARFIDATGTEHRDVFDVRYAGKVAPFDWDAETMLQTGHVGNDTIGAWAFGVLSGYTFATVAGSPRLGLQVDGASGDRHPGDGRVGTFNPLFPNGYYFTLAGYTGYSNLIHVKPSITFKVTPKVTLLTALGFQWRATTADAIYGQGSAVVPGTAGKGTRWTGMYAQVRADWLVSSNVALALEAVHFEVGDSIRALGARNADYVGVEAKFGW
>CP026107.1|AUT74585.1|1678619_1679555_-|glyoxalase
MSTVKMYRLLRAAVVSIAALGVTLAGSPAFAEADHQNAGKSAPVVSVGPQYDTTHVYVSNQDIDAFVDSFVATFGGKASPRAVFTVTPTPSKTASQYVQTPVGMLSVFAFQTPVPYPFGSERTGYLVTDMDKAVRAARAAGADVIVDTFDDPIGKDAVIQWPGGLYMQLYWHTKAPSYGPLETVPDNRVYVSAQAADNFVKRFVRFSHGKVVSDNRRADGGEIGRPGDTIRRVRIASGFGNMLVFVTDGKLPYPYGRETTGYQVADLDATLTKAQGVGVKVLSPASGTVEGRSAMVEFPGGYVAEIHEAKK
>CP026107.1|AUT74586.1|1679613_1680363_-|DUF1275-domain-containing-protein
MQQGPVSTGAEAQLAAQLDHVPGEDTWLATIAGYVDTLGFVALFGLFTAHVTGNFILIGSGLAGAGTGLLIKWLAFPAFVAGIVLARVLDNQLLAHGHGVRACALYVLQAALLTGFMAAGVLAAPITDSDAPLTIACGLLGAAAMGVQNAHGRLTARSVVANTVMTGNVTQAVIDVFDLLFSPADAKARQAARSRLWRTLPPVAGFAIGAGAGAAGYLLASFWALLLPLAALCVLAALSRSTGAAPAQT
>CP026107.1|AUT74587.1|1680344_1680581_-|DUF1427-domain-containing-protein
MSYLISLGAGLVVGLLYYLVRVQSPAPPLIALAGLLGIVIGEHAIPFVQAQIRTPDAQTQSVPSVASNKPTPSCSKDQ

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Crispr_ID: CP026107_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026107_2

2252952-2253033

Orphan

Consensus_repeat	Method
CACGAAGGCAACACGCGGATGCCAGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026107_2

>merge|CP026107|2|2252952-2253033|CRISPRCasFinder
CACGAAGGCAACACGCGGATGCCAGCAAAAACACAAGCAAACCAAACCGTCCGCGCCACGAAGGCAATACGCGGATGCCAGC

>CP026107|2|2|2252952-2253033|CRISPRCasFinder
CACGAAGGCAACACGCGGATGCCAGC	AAAAACACAAGCAAACCAAACCGTCCGCGC
CACGAAGGCAATACGCGGATGCCAGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026107.1\|AUT75050.1\|2259402_2260845_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
CP026107.1\|AUT75038.1\|2243520_2244762_-\|protein-serine/threonine-phosphatase	unknown	unknown	gnl\|CDD\|341373
CP026107.1\|AUT75036.1\|2242540_2242936_-\|DUF1987-domain-containing-protein	unknown	unknown	gnl\|CDD\|378154
CP026107.1\|AUT75048.1\|2258218_2258878_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|224103
CP026107.1\|AUT75051.1\|2261165_2261681_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|274649
CP026107.1\|AUT75041.1\|2249236_2249695_-\|3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|238262
CP026107.1\|AUT75047.1\|2257737_2258196_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
CP026107.1\|AUT75037.1\|2242954_2243518_-\|hypothetical-protein	unknown	unknown	unknown
CP026107.1\|AUT75042.1\|2251298_2252081_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP026107.1\|AUT75404.1\|2249711_2251079_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
CP026107.1\|AUT75034.1\|2240665_2241793_+\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|225125
CP026107.1\|AUT75043.1\|2253934_2254774_-\|2-pyrone-4,6-dicarboxylate-hydrolase	unknown	unknown	gnl\|CDD\|238636
CP026107.1\|AUT75046.1\|2256283_2257039_-\|NmrA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223774
CP026107.1\|AUT75040.1\|2248173_2249226_+\|porin	unknown	unknown	gnl\|CDD\|238208
CP026107.1\|AUT75049.1\|2258874_2259312_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026107.1\|AUT75035.1\|2241813_2242539_-\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
CP026107.1\|AUT75039.1\|2245660_2248081_+\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
CP026107.1\|AUT75405.1\|2253074_2253905_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381366
CP026107.1\|AUT75044.1\|2254927_2255824_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176107
CP026107.1\|AUT75045.1\|2255833_2256250_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380362

Protein	Function_ID	Function_description	E-value
CP026107.1\|AUT75050.1\|2259402_2260845_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	5.80956e-118
CP026107.1\|AUT75038.1\|2243520_2244762_-\|protein-serine/threonine-phosphatase	gnl\|CDD\|341373	cd04598, CBS_pair_GGDEF_EAL, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	1.00431e-50
CP026107.1\|AUT75036.1\|2242540_2242936_-\|DUF1987-domain-containing-protein	gnl\|CDD\|378154	pfam09345, DUF1987, Domain of unknown function (DUF1987). This family of proteins are functionally uncharacterized.	1.27878e-53
CP026107.1\|AUT75048.1\|2258218_2258878_-\|flavodoxin-family-protein	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	2.01725e-35
CP026107.1\|AUT75051.1\|2261165_2261681_+\|peroxiredoxin	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	4.14236e-50
CP026107.1\|AUT75041.1\|2249236_2249695_-\|3-dehydroquinate-dehydratase	gnl\|CDD\|238262	cd00466, DHQase_II, Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.	2.12552e-74
CP026107.1\|AUT75047.1\|2257737_2258196_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	3.95323e-32
CP026107.1\|AUT75404.1\|2249711_2251079_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.54601e-142
CP026107.1\|AUT75042.1\|2251298_2252081_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	1.5491e-52
CP026107.1\|AUT75039.1\|2245660_2248081_+\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
CP026107.1\|AUT75034.1\|2240665_2241793_+\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.57174e-29
CP026107.1\|AUT75043.1\|2253934_2254774_-\|2-pyrone-4,6-dicarboxylate-hydrolase	gnl\|CDD\|238636	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.	2.18622e-44
CP026107.1\|AUT75046.1\|2256283_2257039_-\|NmrA-family-transcriptional-regulator	gnl\|CDD\|223774	COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	8.06163e-29
CP026107.1\|AUT75040.1\|2248173_2249226_+\|porin	gnl\|CDD\|238208	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane. Individual 16-strand anti-parallel beta-barrels form a central pore, and trimerizes thru mainly hydrophobic interactions at the interface. Trimers are stabilized by hytrophillic clamping of Loop L2. Loop 3 bends into the pore, creating an elliptical constriction of about 7 x 11A, large enough to allow passage of a glucose molecule without steric hindrance. Removal of the C-terminal residue (usuallly F) destabilizes the trimer and removal of the 16th beta-sheet abolishes trimerization. Unlike typical membrane proteins, porins lack long hydrophobic stretches. Short turns are found at the smooth, periplasmic end, longer irregular loops are found at the rough, extracellular end. C-terminal residue forms salt bridge with N-terminus.	5.62996e-56
CP026107.1\|AUT75049.1\|2258874_2259312_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.16088e-10
CP026107.1\|AUT75035.1\|2241813_2242539_-\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	5.757e-50
CP026107.1\|AUT75405.1\|2253074_2253905_-\|aldo/keto-reductase	gnl\|CDD\|381366	cd19140, AKR_AKR3F3, Sinorhizobium meliloti isatin reductase and similar proteins. Sinorhizobium meliloti isatin reductase is a founding member of aldo-keto reductase family 3 member F3 (AKR3F3). It is a aldo/keto reductase family oxidoreductase.	6.13962e-135
CP026107.1\|AUT75044.1\|2254927_2255824_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176107	cd08415, PBP2_LysR_opines_like, The C-terminal substrate-domain of LysR-type transcriptional regulators involved in the catabolism of opines and that of related regulators, contains the type 2 periplasmic binding fold. This CD includes the C-terminal substrate-domain of LysR-type transcriptional regulators, OccR and NocR, involved in the catabolism of opines and that of LysR for lysine biosynthesis which clustered together in phylogenetic trees. Opines, such as octopine and nopaline, are low molecular weight compounds found in plant crown gall tumors that are produced by the parasitic bacterium Agrobacterium. There are at least 30 different opines identified so far. Opines are utilized by tumor-colonizing bacteria as a source of carbon, nitrogen, and energy. NocR and OccR belong to the family of LysR-type transcriptional regulators that positively regulates the catabolism of nopaline and octopine, respectively. Both nopaline and octopalin are arginine derivatives. In Agrobacterium tumefaciens, NocR regulates expression of the divergently transcribed nocB and nocR genes of the nopaline catabolism (noc) region. OccR protein activates the occQ operon of the Ti plasmid in response to octopine. This operon encodes proteins required for the uptake and catabolism of octopine. The occ operon also encodes the TraR protein, which is a quorum-sensing transcriptional regulator of the Ti plasmid tra regulon. LysR is the transcriptional activator of lysA gene encoding diaminopimelate decarboxylase, an enzyme that catalyses the decarboxylation of diaminopimelate to produce lysine. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.14929e-44
CP026107.1\|AUT75045.1\|2255833_2256250_-\|cupin-domain-containing-protein	gnl\|CDD\|380362	cd02234, cupin_BLR7677-like, Bradyrhizobium japonicum BLR7677 and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to BLR7677, a Bradyrhizobium japonicum protein of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.16992e-49

>CP026107.1|AUT75042.1|2251298_2252081_+|IclR-family-transcriptional-regulator
MPGVTERTMAVLEFLATQMEGTPLALISDQLEIPRSACHRLLVDLKQCGYVRQLREHGDYVLTTKMVGLGLSYLATSGIVDIAQTMLDRLAEGSGELVRLAIVDGDRLTWVAKSQGALKGLRYDPDMGMDTILSCSATGHAWMMTMTDERALELVTRQGFGSPKQYGPKAPTTIGALLKFVHAARDRGYATINEVFAPGMTAMAAPVQRRGYPAIGVISIAGPLVRLTEKRMETLGPTLVAAASELAAASLASPLFARVR
>CP026107.1|AUT75404.1|2249711_2251079_-|MFS-transporter
MNNPSHLPAQQAMRTRAVTAAAVGTALEWFDFTLYGALAATVLPKLFFPAMDSTSALLASLATFGVGLAARPLGAIICGHLGDKLGRRNLMLATVSVMGMSSMLMGLLPTYASIGVWAPLLLVLLRILQGFALGGESTGAQLMAIEHASSDRRGKYSGLLGLCSPLSQIMANGVLLGLSTAMSTDAFDSYGWRIPFVMSFILVIVGVYIRLRVSETPAFEALRKTEVVEVGSPLRDALRLHWRTVLRWMLFFCGPAAIFYLIVVFSLSYVTKTLGVPKQTGFLLLMGANVCAIAGALAGGMLSDRIGRRKALALGSCMTLAMLFFYFQILDTKSFLPMLLAMGFFLGFTQFQSGIQPVAFAEAFPTNVRYSGSALAYTGANLVAGGPMPVLAVWLFAVCNGSPWGVVAVCVAFNVISLIAILTAPETLGIDMNRADSKAEVLGASTHGSMQSHSH
>CP026107.1|AUT75041.1|2249236_2249695_-|3-dehydroquinate-dehydratase
MKPTVYVLNGSNLNMLGKREPHLYGTTTLAQIKERTEALAEELGVRCEFRQTNHEGVMVDWLQEAFEADAAVVINPAGFSFASIPVLDAVKLIRQPVIEVHITNIHQRDEQYRHSLISLAARGVICGLGPEGYLLAMRAVASGLSQQAATAR
>CP026107.1|AUT75040.1|2248173_2249226_+|porin
MKRSLLASPAVRRTSIAFAVFAVFAAHVASAHAQASVTLYGALDTSIEITNPGAGYVARMDSGAYRGSRVGLRGAEDIGNGVQILFDLENGFSSGNGSLAVANTIFNRQAWIGAATPYGTVRIGRQYSPIYIPFKGQLDAFGAGTIASGLNNLSKITPYASNAITYLSPEFHGFSTTFMAMVRDPADGDGNGLAGHIETFAWRNGPLRVSYAHQQTHGDGALRANLGGMSYAYGALTGFVSFFNGDGGTPRYHNDGVSVSARYAVNARFRASLGYAYLRDRSGGDNNADQFSAACEYDLSKRVLLYASAGWLRNRGQGEFTLKGVNVTGLAPSWPGATVRGVQLGMIDRF
>CP026107.1|AUT75039.1|2245660_2248081_+|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MSKQPQTKPLSTTARVGLTLAGALGLLLGLYFAIGGALLVARGGTWYYLLMGLAVCATGIQLARRKSSACVIFALVIVATVLWAIWESGFDFWPLQARIFMFTMIGMLLAPVYPALRRFQGKQPAKGAAWTAGLALLACNALFVYGMFVPHGTFGTEANSINAKGDAGTADWSAYGHSAGGDRFAGSTQIDRNNVKNLQVAWTYHTGDVPVSPGGGGAEDQETPLQIGDTLFLCSPHNTVIALDAANGREKWRHEFPTKTTVWVRCRGLAYFDATKPVQQPSVAGSTPVTPVAMPDDHAACRRRIYMNTIDAQLVALDSDTGKLCEDFGNHGVIDLKAGLGHAASPLYELTSPPTVAGTTIVVGGRVADNVSLDMPGGVVRGFDVITGTMKWAFDPGNPQDKQAPAPGKTFVRSTPNVWAPMSYDATSNTVYMPVGSAAIDLWGVKRTKLDESYGASILALDATTGAEKWHFQTVHHDLWDYDVPMQPTLVDFPVDGKTVPALIVGTKMGQLFVLDRLTGKPLTKVIEQPVKSATIPGEPYAKTQPLSVGMPQIGADVLKGADMWGMTPVDQMMCRIIFHGMRYDGLFTAPDTDTSLSFPGSLGGMNWGGLSYDPNAGMIYVNDMRLGLWVHLVKQERKGGTSNGNEAVNAGMGAVPLGGTPYSVTKDRFFSPLGIPCQKPPFGSLTAIDLKTRSIAWQVPLGTVRDTRLWGVQMHMPTPIGMPTIGGSLSTGGGLVFFAATQDYYLRAFDSSTGKEVWKARLPVGSQGTPMSYVLNGKQYIVISAGGARQSPDRGDYVIAYALPQ
>CP026107.1|AUT75038.1|2243520_2244762_-|protein-serine/threonine-phosphatase
MHPAFSRFRRPSAQGEPHSAGDLCQQVPSVDAEDPNSVVMEIFSSRHDMKSLAVIEGNRPIGLINRDIFLSQMSKPFHRELYDKKSCIAFMDKEPLVVDADMSIEALTFKTVEVGEKALVDGFIVTRDGYFAGLGSGLQLLGAVAEMQAERNRQIMQSIEYASVIQRAMLRASRDTLAARLPDAALVWEPRDVVGGDFYHFAAFPHGWFGATADCTGHGVPGAFMTLLASASLSQALEQIGPRDPAALLAAVNRNVKSLLGQVHSAAEVSQSDDGLDAAFFWFDARESELHFAGARIALHILTPEADQFETIAGDRMGVGYVDSLADYEWKLRKISVPSGSLLFICTDGLIDQIGGPKNIAFGRRRALDLILSNRTEAPSAICEKLRQALADWQGAQPRRDDLTLFCARITDQ
>CP026107.1|AUT75037.1|2242954_2243518_-|hypothetical-protein
MSQLLDQDSAFFDLAQRRNVLFYHKGYFSHNIVAAMGEVVKLQLEIAGVSGPTRRKLFSSFVELSQNIVHYSSDSLQPGNESGGSIREGAVCITTDGESHLMMCVNPIAAEDVEGLRNKLEPLRSMSVEEIKQAYKVTLRADTPEESKGAGLGFLTMARDASAPLEFAFHPRADEPGTTLFCLKAII
>CP026107.1|AUT75036.1|2242540_2242936_-|DUF1987-domain-containing-protein
MDNLYIAATATSPEVDFRFDQHSLLLRGESYPENAAAFYAPIIEQLRQYLAESVGAVITVDVVLTYFNSSSTKMLFSVFDALDEAAQSGSRVLMNWYRDEEDETIAEFGEELKADFHAIEFTDRPVAHQGQ
>CP026107.1|AUT75035.1|2241813_2242539_-|GGDEF-domain-containing-protein
MPRISSLDTLASDAPDLFQNENEALEKARGIHATAAADAGDYRQSLGELIGHFERLMRETRRLIGRSDRAEREMQALAQQLAHRATHDALTGVFNRSAVIERASKALRHGSAVMIILDIDEFKQVNDDFGHPAGDAVIMGIVACLRRIVGERGFIGRVGGEEFTVLLPGYEVDDALRQAENMREAIGKHVFASPVDRHITASFGVSANPAGTSFDTAYGLADAALYRAKRGGRNRVEFANP
>CP026107.1|AUT75034.1|2240665_2241793_+|high-frequency-lysogenization-protein-HflD
MLTLERRLLHILIAVCVTVAGFILAAPSHAASPAVDVFGQPIQSASSPAESASPSSAPSASETHHTFVLPEFARTALATSIIWQGRLNARIADAAQQLHRASTPWTWLALIGLAFAYGVLHALGPGHGKLVAGTWLGSRDTRIAQAVALASWSSAVQAMSAIVLVFGALWFAKAGVSSVLSNAASLDIVSYVLLCVAGGWTIYSTLARRDCCVDPRALKLVPVERNAASSQTSEHEPAYLGTKLQLHMRQSGSTTRFGRSKISVTSQILATGFASGVRPCVGSIFVLIASVAAHAPWIGIAATFAIGAGVAVTVTLFGLGAVGANRFVMARSFRLRSRIEATKRVVAVTGALVIVLFGAVQTALILTGYLQPALT
>CP026107.1|AUT75405.1|2253074_2253905_-|aldo/keto-reductase
MEHIVNRHGLDMPKLGLGTWPMVGEDCTRAVVQALELGYRHIDTAAGYQNEDAVGAALAASPVPREQIHVTSKVWWDQLEPQALRVSCERSLRDLRSEYVDLFLIHWPTGDMDLRRSIDALVALKERGLARAIGVANFPLPLLREAVETIGAPLAAIQVEYHVTLGQSKLLDFARQHEMALTAYSPLARNRVSEIPAIVDIARKHGVLPTQIALGWLLEQANVAAVPKAGGAVNQASNLASLDVRLDDEDRAVIAALPKGERLVSPAFAPQWDEVV
>CP026107.1|AUT75043.1|2253934_2254774_-|2-pyrone-4,6-dicarboxylate-hydrolase
MSVFDEDKIDCHCHIFDPVRFPYRDDTAYRPAQQEIGTAAQFVHVMDAYGVRHALLVGPTSGYRTDNRCLLDALETYEERFRGIAVVDNDIGRGELVALRRAGVVGVAFNPAMEGVELVRDAGALFALLADLGMFAQIQVCGDQLVALAPWLAQQEAQLLIDHGGRPDIEAGVAQPGFQALLRLADSARASVKLSGWQKYSRDAYPYEDAWPYAHALLGAFGPQRCVWGSDWPFLRAPERLDYGPLLTLFEQIVPDAETRHQIQWETPRRLFGFDAQRS
>CP026107.1|AUT75044.1|2254927_2255824_+|LysR-family-transcriptional-regulator
MRFKLRQMEVFRAVMLTGSINAAAKMLYVSQPAVSKLVAHTETTLGLRLFERAKGRLIPTAEAQALYREVEQVYQSALRVDEFARALALGPASLLRVACSPSLAPGVVAPAIVELKRQLPGLSVDWHTTLMADLPLEVLSKTVDVAITSLPIEHEHLEAVPFMRGRMVCALPPGHPLAARERIALADLEHEPMILFRRDIPFGTIIVRACQQANVELTSVVDVTRADQALALVRGGLGLAIVDEFAAGDVDCIVRPLVEDLEMVSTFVYSKFSPPSRSATVLMQAVCRRADELGRLTR
>CP026107.1|AUT75045.1|2255833_2256250_-|cupin-domain-containing-protein
MKRILCSLLIASLPFGSVLAQTPKEKSAKVTLVYQHELPNVPGKSIKGVLVEYGPGGYSAGHTHAKSAFIYATVLEGAIRSQVNDGPVTVYKAGQNFSELPGDRHGVSANASKTKPAKLLAVFVVDTNETELTTPFGN
>CP026107.1|AUT75046.1|2256283_2257039_-|NmrA-family-transcriptional-regulator
MKIVIIGGTGLIGSKTAAILRQADHDVVAASPRSGVNTITGEGLKACLTGAQVVIDLSNSPSFEDKAVLEFFETSARNLRTAEAEAGVRHHVALSIVGTDRTPENGYFRAKVAQEKLVESSGVPYTIVRSTQFFEFLGGIADSGMQDNAVRLSPGMFQPIAADDVAAIVADVALAAPRNGIIDIAGPERAPFDEIIARYLKAVGDPREVVRDPEARYFGGLVGDLSLVPLGEARLGKIGFDEWFRRSQSKA
>CP026107.1|AUT75047.1|2257737_2258196_-|carboxymuconolactone-decarboxylase-family-protein
MNAPRLAWTTLSPVQFKSLYAVSQSLAESSLGSKLIELVQTRVSQINGCAYCLDMHARELRKGGESWQRLNVLSAWRETHFFTAKEQSALAWAESLTCLPDGHADREVEYQALREHFNDGEIVELTWAVAVINAWNRMAIGMHQPVDANPID
>CP026107.1|AUT75048.1|2258218_2258878_-|flavodoxin-family-protein
MNSLKVLLLDCSPRRDNSTSRHFTRHLLPAMAERLGRDIQITRRDLGTQPLPPITESHAESLVLPGDVAKERFGEALAVSDELIRELDQADMLWISTPVHNFTVPAVLKNWIDHVVRIDVTFAAGPNGKVGLLRDRPTFVAVTAGGAMFREPAYQPDFFRPYLSAVLGVIGLKDVTFMHAAGLVSTDEPLALVEAKAGQWLRDNPQRHASSESNASSIA
>CP026107.1|AUT75049.1|2258874_2259312_-|N-acetyltransferase
MTDTLTLRHAETDADVMACFDVMHQLRPQLNSPEDFLARVALQRAQGYRLLGVWENGKAVALAGYRRIDNLIHGRFIYVDDLITDEAGRGHGHGERLLAELGTLGRADDCQRLVLDTALANALAQRFYFRCGLLARGLHFSMELA
>CP026107.1|AUT75050.1|2259402_2260845_+|PLP-dependent-aminotransferase-family-protein
MTQPTARAKPGAPPIHEQIYARFRAMIEQGQLSPGQKVSSLRALATELGVARGTVQVAYDRLLGEGYLVARGPAGTFVSEHTAPAQPARAKQAAVVAPPLPAEGAPDNIIEVDGGSPAPFQMGLPALDEFPRKLWAGLMARQVRKAGSLTKPAPAGYMPLREALAAYLHRSRGIDADAGQVFIVPAYTASLALTVDALGLARESAWVEHPGYPPTAQTLKRLGLPVCDVSVDQHGINVAFGRAHFPNARLAVVTPSHQSPTGVALPLQRRVELLDWAGERDAWIVEDDYDGEYRYRGHPLPALKSMDSGGRVIYCGTLSKVLFPGLRLSYVVVAQSLVPQFELACRRTAHGGCPELLQAAVAEFISEGHFSRHIKRMRTLYARRRALLAEALAPYAAEGFVVHLQDGGMHLLVDVRDDLDDVVLASRARNAGFAVHALTTWRNGAPGRRGLLMGFTNVRDRDEAERLVAELIRSFELQAG
>CP026107.1|AUT75051.1|2261165_2261681_+|peroxiredoxin
MTTLRPPPLTLLDKYSGHEPQILYSTTVTVTGGGASHGRASGIARSDDGQLAVELRMPKALGGPGGGTNPEQLFAAGYAACFHGALSLLAARSAVRIHDASVDVTVDFGRDPIDGLFVLSAHTRVHLPGVDRAVAEELVRKTERFCPYTKMARQGIVNVVALVVAGETSES

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026107_1	1.1\|1670552\|33\|CP026107\|CRISPRCasFinder	1670552-1670584	33	CP026105.1	1611094-1611126	2	0.939
CP026107_2	2.1\|2252978\|30\|CP026107\|CRISPRCasFinder	2252978-2253007	30	CP026105.1	2700601-2700630	1	0.967
CP026107_2	2.1\|2252978\|30\|CP026107\|CRISPRCasFinder	2252978-2253007	30	CP026106.1	261249-261278	2	0.933

1. spacer 1.1|1670552|33|CP026107|CRISPRCasFinder matches to position: 1611094-1611126, mismatch: 2, identity: 0.939

agcacaggggcgacgcttgaacagcaaacaccg	CRISPR spacer
agcacaggggcgacgcatgaacggcaaacaccg	Protospacer
**************** *****.**********

2. spacer 2.1|2252978|30|CP026107|CRISPRCasFinder matches to position: 2700601-2700630, mismatch: 1, identity: 0.967

aaaaacacaagcaaaccaaaccgtccgcgc	CRISPR spacer
aaaaccacaagcaaaccaaaccgtccgcgc	Protospacer
**** *************************

3. spacer 2.1|2252978|30|CP026107|CRISPRCasFinder matches to position: 261249-261278, mismatch: 2, identity: 0.933

aaaaacacaagcaaaccaaaccgtccgcgc	CRISPR spacer
aaaaacactagcaaaccaaaccggccgcgc	Protospacer
******** ************** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026107_2	2.1\|2252978\|30\|CP026107\|CRISPRCasFinder	2252978-2253007	30	MN582058	Caudovirales sp. ctOwN3, complete genome	26064-26093	7	0.767

1. spacer 2.1|2252978|30|CP026107|CRISPRCasFinder matches to MN582058 (Caudovirales sp. ctOwN3, complete genome) position: , mismatch: 7, identity: 0.767

aaaaacacaagcaaaccaaaccgtccgcgc	CRISPR spacer
aacaacacaagcaaaccaaaacgctaacgg	Protospacer
** ***************** **.. .**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1282943 : 1352587

Lake_Baikal_phage(25.0%)

transposase,protease,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUT74264.1\|1282943_1283456_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AUT74265.1\|1283460_1285338_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUT74266.1\|1285322_1286402_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUT74267.1\|1286406_1289106_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.6e-82	31.6
AUT74268.1\|1289149_1289539_+	DUF4280 domain-containing protein	NA	NA	NA	NA
AUT74269.1\|1289540_1291529_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.5e-37	28.0
AUT74270.1\|1291565_1293344_+	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AUT74271.1\|1293388_1294723_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AUT74272.1\|1294746_1296033_+	type VI secretion system protein TssL	NA	NA	NA	NA
AUT74273.1\|1296076_1299604_+	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AUT74274.1\|1299600_1300326_+	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AUT74275.1\|1300383_1300974_+	OmpA family protein	NA	NA	NA	NA
AUT75313.1\|1300998_1301916_+	hypothetical protein	NA	NA	NA	NA
AUT74276.1\|1301957_1302764_-	IclR family transcriptional regulator	NA	NA	NA	NA
AUT75314.1\|1302921_1303692_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
AUT75315.1\|1303773_1304430_+	amino acid ABC transporter permease	NA	NA	NA	NA
AUT74277.1\|1304426_1305185_+	amino acid ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	4.2e-17	32.7
AUT74278.1\|1305187_1306483_+	FAD-binding oxidoreductase	NA	NA	NA	NA
AUT74279.1\|1307484_1308183_+	two pore domain potassium channel family protein	NA	NA	NA	NA
AUT74280.1\|1310813_1311905_+	SAM-dependent methyltransferase	NA	NA	NA	NA
AUT74281.1\|1312157_1313015_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
AUT74282.1\|1313185_1313404_+	hypothetical protein	NA	NA	NA	NA
AUT74283.1\|1313617_1314577_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	5.3e-09	25.6
AUT74284.1\|1315040_1315367_-	histone family protein nucleoid-structuring protein H-NS	NA	NA	NA	NA
AUT74285.1\|1316697_1316901_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	6.3e-21	73.1
AUT74286.1\|1317299_1317929_-	TerB family tellurite resistance protein	NA	NA	NA	NA
AUT75316.1\|1318491_1319061_-	hypothetical protein	NA	NA	NA	NA
AUT74287.1\|1319423_1320086_-	hypothetical protein	NA	NA	NA	NA
AUT74288.1\|1320240_1320522_-	hypothetical protein	NA	NA	NA	NA
AUT74289.1\|1320961_1321945_-\|protease	serine protease	NA	NA	NA	NA
AUT74290.1\|1321985_1322858_-	hypothetical protein	NA	NA	NA	NA
AUT74291.1\|1322857_1324411_-	hypothetical protein	NA	NA	NA	NA
AUT74292.1\|1324492_1326175_-	cell envelope biogenesis protein OmpA	NA	NA	NA	NA
AUT74293.1\|1327396_1327600_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	2.4e-20	71.6
AUT75317.1\|1327742_1328462_-	DUF1223 domain-containing protein	NA	NA	NA	NA
AUT74294.1\|1328516_1329362_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
AUT74295.1\|1330331_1330631_+	hypothetical protein	NA	NA	NA	NA
AUT74296.1\|1330879_1331164_+	hypothetical protein	NA	NA	NA	NA
AUT74297.1\|1331783_1332191_-	hypothetical protein	NA	NA	NA	NA
AUT74298.1\|1332840_1334217_+	hypothetical protein	Q9JMP3	Wolbachia_phage	2.7e-86	38.8
AUT74299.1\|1334802_1337559_-	UPF0182 family protein	NA	NA	NA	NA
AUT74300.1\|1337854_1338439_-	carbonic anhydrase	NA	NA	NA	NA
AUT74301.1\|1338540_1339368_-	hypothetical protein	NA	NA	NA	NA
AUT74302.1\|1339364_1339970_-	DUF1326 domain-containing protein	NA	NA	NA	NA
AUT74303.1\|1340142_1341123_+	GlxA family transcriptional regulator	NA	NA	NA	NA
AUT74304.1\|1341647_1341950_-	hypothetical protein	NA	NA	NA	NA
AUT74305.1\|1342135_1342387_+	plasmid stabilization protein	NA	NA	NA	NA
AUT74306.1\|1342623_1343724_+	hypothetical protein	NA	NA	NA	NA
AUT75318.1\|1344498_1344969_+	universal stress protein	NA	NA	NA	NA
AUT74307.1\|1345239_1346052_+	hypothetical protein	NA	NA	NA	NA
AUT74308.1\|1346509_1346821_-	DUF4148 domain-containing protein	NA	NA	NA	NA
AUT74309.1\|1347168_1347360_-	hypothetical protein	NA	NA	NA	NA
AUT75319.1\|1347603_1348032_-	hypothetical protein	NA	NA	NA	NA
AUT74310.1\|1348567_1349038_-	hypothetical protein	NA	NA	NA	NA
AUT74311.1\|1349403_1349667_+	hypothetical protein	NA	NA	NA	NA
AUT74312.1\|1349721_1349946_+	hypothetical protein	NA	NA	NA	NA
AUT74313.1\|1350258_1350477_+	hypothetical protein	NA	NA	NA	NA
AUT74314.1\|1351048_1352587_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-47	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. CP026109

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

467530 : 531196

Mycobacterium_phage(12.5%)

transposase,protease,integrase

attL 463355:463370|attR 515157:515172

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
463355:463370	attL	NA	NA	NA	NA
AUT76774.1\|467530_468301_+\|protease	serine protease	NA	NA	NA	NA
AUT76775.1\|469359_469656_+\|integrase	integrase	NA	NA	NA	NA
AUT76776.1\|469859_470495_+	2OG-Fe(II) oxygenase	NA	NA	NA	NA
AUT76536.1\|470511_470700_+	hypothetical protein	NA	NA	NA	NA
AUT76537.1\|472477_472861_+	conjugal transfer protein TraR	NA	NA	NA	NA
AUT76538.1\|473092_473776_+	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	1.3e-14	31.6
AUT76539.1\|473747_475178_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
AUT76540.1\|476047_476839_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
AUT76541.1\|477461_477863_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
AUT76542.1\|478270_478798_+	hypothetical protein	NA	NA	NA	NA
AUT76543.1\|479044_479326_+	RNA chaperone Hfq	NA	NA	NA	NA
AUT76544.1\|479349_479613_-	hypothetical protein	NA	NA	NA	NA
AUT76545.1\|479889_480123_-	hypothetical protein	NA	NA	NA	NA
AUT76546.1\|480158_480734_+	phasin	NA	NA	NA	NA
AUT76547.1\|481002_481206_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	5.4e-20	70.1
AUT76777.1\|481295_483548_-	catalase/peroxidase HPI	NA	NA	NA	NA
AUT76548.1\|484028_484295_-	hypothetical protein	NA	NA	NA	NA
AUT76549.1\|484797_485313_-	hypothetical protein	NA	NA	NA	NA
AUT76550.1\|485819_486023_-	HU family DNA-binding protein	Q6QIE5	Burkholderia_phage	1.7e-10	54.0
AUT76551.1\|486781_487123_+	hypothetical protein	NA	NA	NA	NA
AUT76552.1\|487339_487867_+	hypothetical protein	NA	NA	NA	NA
AUT76553.1\|487966_488110_-	DUF2905 domain-containing protein	NA	NA	NA	NA
AUT76554.1\|488137_488686_+	hypothetical protein	NA	NA	NA	NA
AUT76778.1\|489209_489446_+	hypothetical protein	NA	NA	NA	NA
AUT76555.1\|489742_490135_-	hypothetical protein	NA	NA	NA	NA
AUT76556.1\|490124_490844_-	YecA family protein	NA	NA	NA	NA
AUT76557.1\|491339_491984_+	MarR family transcriptional regulator	NA	NA	NA	NA
AUT76558.1\|492498_493176_-	hypothetical protein	NA	NA	NA	NA
AUT76559.1\|493664_493904_-	hypothetical protein	NA	NA	NA	NA
AUT76779.1\|494307_495132_-	peptidylprolyl isomerase	NA	NA	NA	NA
AUT76780.1\|495407_496808_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	5.8e-20	37.1
AUT76560.1\|496829_497015_+	hypothetical protein	NA	NA	NA	NA
AUT76561.1\|497124_498687_+	diguanylate phosphodiesterase	NA	NA	NA	NA
AUT76562.1\|499139_499883_-	beta-ketoacyl-ACP reductase	A0A0K0KVL6	Prochlorococcus_phage	2.1e-08	29.6
AUT76563.1\|500051_500624_-	Phasin (PHA-granule associated protein)	NA	NA	NA	NA
AUT76564.1\|500866_501064_-	hypothetical protein	NA	NA	NA	NA
AUT76565.1\|502226_502643_-	hypothetical protein	NA	NA	NA	NA
AUT76566.1\|502959_503268_-	acylphosphatase	NA	NA	NA	NA
AUT76567.1\|505342_505765_-	hypothetical protein	NA	NA	NA	NA
AUT76568.1\|505763_507011_+\|transposase	ISL3 family transposase	A4PE56	Ralstonia_virus	3.5e-45	32.1
AUT76781.1\|507300_507585_+	DUF2442 domain-containing protein	NA	NA	NA	NA
AUT76569.1\|507781_508207_-	response regulator	NA	NA	NA	NA
AUT76570.1\|509635_510256_+	hypothetical protein	NA	NA	NA	NA
AUT76571.1\|511382_512513_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AUT76572.1\|512509_513649_+	hypothetical protein	NA	NA	NA	NA
AUT76573.1\|513665_515129_+	DUF4331 domain-containing protein	NA	NA	NA	NA
AUT76574.1\|517690_517963_+	hypothetical protein	NA	NA	NA	NA
515157:515172	attR	NA	NA	NA	NA
AUT76575.1\|519134_520982_+	hypothetical protein	NA	NA	NA	NA
AUT76576.1\|522621_523795_+\|transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	1.7e-73	47.2
AUT76577.1\|523758_524229_-	hypothetical protein	NA	NA	NA	NA
AUT76578.1\|524406_525567_-	sialidase	NA	NA	NA	NA
AUT76579.1\|525603_525873_-	thiamine biosynthesis protein ThiS	NA	NA	NA	NA
AUT76580.1\|526440_526668_-	hypothetical protein	NA	NA	NA	NA
AUT76581.1\|526666_527920_+	oxidase	NA	NA	NA	NA
AUT76782.1\|527934_528222_+	sulfide dehydrogenase	NA	NA	NA	NA
AUT76783.1\|530218_531196_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.4e-17	31.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage