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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026204 Escherichia coli strain ECONIH5 plasmid pKPC-bca9, complete sequence 0 crisprs NA 0 0 1 0
CP026202 Escherichia coli strain ECONIH5 chromosome, complete genome 0 crisprs c2c9_V-U4,cas3,RT,DinG,WYL,DEDDh,csa3,cas8e,cse2gr11,cas7,cas5,cas1,cas2 0 0 20 0
CP026207 Escherichia coli strain ECONIH5 plasmid pECO-dc1b, complete sequence 0 crisprs DEDDh 0 0 2 0
CP026209 Escherichia coli strain ECONIH5 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0
CP026203 Escherichia coli strain ECONIH5 plasmid pECO-a7e8, complete sequence 0 crisprs NA 0 0 2 0
CP026205 Escherichia coli strain ECONIH5 plasmid pKPC-e3ee, complete sequence 0 crisprs NA 0 0 0 0
CP026206 Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence 0 crisprs TnsE_C,RT,csa3 0 0 2 0
CP026208 Escherichia coli strain ECONIH5 plasmid pECO-109b, complete sequence 0 crisprs PD-DExK 0 0 1 0

Results visualization

1. CP026204
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 14153 : 53984 43 Escherichia_phage(20.0%) coat,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP026202
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2817 : 46008 46 Enterobacteria_phage(42.11%) head,terminase,lysis,transposase,portal,tail,capsid NA
DBSCAN-SWA_2 90406 : 121073 20 Acinetobacter_phage(33.33%) integrase,transposase attL 93784:93843|attR 124085:124852
DBSCAN-SWA_3 287792 : 304377 24 Escherichia_phage(75.0%) holin,tRNA NA
DBSCAN-SWA_4 414036 : 490571 85 Vibrio_phage(48.94%) head,transposase,plate,tail,tRNA NA
DBSCAN-SWA_5 535774 : 577577 60 Shigella_phage(46.0%) head,terminase,protease,capsid,lysis,plate,transposase,portal,tail,holin,integrase attL 533929:533943|attR 575901:575915
DBSCAN-SWA_6 675633 : 790948 143 Salmonella_phage(23.33%) head,lysis,transposase,plate,tail,holin,integrase attL 746906:746965|attR 791035:792232
DBSCAN-SWA_7 823514 : 1055646 234 Salmonella_phage(31.5%) head,terminase,integrase,protease,capsid,lysis,transposase,plate,portal,tail,holin,tRNA attL 835453:835473|attR 1056610:1056642
DBSCAN-SWA_8 1545583 : 1589084 36 Escherichia_phage(18.18%) protease,holin,transposase NA
DBSCAN-SWA_9 1598476 : 1641831 48 Escherichia_phage(33.33%) transposase NA
DBSCAN-SWA_10 1650733 : 1708302 53 Erysipelothrix_phage(16.67%) holin,tRNA,transposase NA
DBSCAN-SWA_11 2005070 : 2059921 46 Escherichia_phage(13.33%) protease,integrase,transposase,tRNA attL 2017790:2017808|attR 2026262:2026280
DBSCAN-SWA_12 2436522 : 2496580 68 Salmonella_phage(80.56%) terminase,integrase,tRNA,plate,portal,tail,holin,capsid attL 2434996:2435040|attR 2467414:2467458
DBSCAN-SWA_13 2763036 : 2777509 15 Morganella_phage(25.0%) transposase NA
DBSCAN-SWA_14 3371473 : 3422798 45 Escherichia_phage(25.0%) integrase,tRNA,transposase attL 3389593:3389607|attR 3417646:3417660
DBSCAN-SWA_15 3523810 : 3573918 51 Escherichia_phage(37.5%) protease,integrase,transposase,tRNA attL 3518469:3518492|attR 3566441:3566464
DBSCAN-SWA_16 3789178 : 3802361 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_17 3839261 : 3896265 54 Human_immunodeficiency_virus(13.33%) integrase,tRNA,transposase attL 3884506:3884565|attR 3898458:3899506
DBSCAN-SWA_18 4009880 : 4097830 96 Escherichia_phage(20.69%) head,terminase,protease,capsid,portal,tail,tRNA NA
DBSCAN-SWA_19 4478672 : 4488113 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_20 4746275 : 4807143 56 Salmonella_phage(23.53%) tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP026207
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 27781 : 60440 44 Acidithiobacillus_phage(28.57%) transposase NA
DBSCAN-SWA_2 134355 : 161449 28 Pandoravirus(25.0%) integrase,transposase attL 139075:139134|attR 160612:161473
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. CP026203
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 668 : 11960 11 Salmonella_phage(25.0%) transposase NA
DBSCAN-SWA_2 26494 : 34604 8 Escherichia_phage(50.0%) transposase,integrase attL 18482:18494|attR 27716:27728
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. CP026206
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 4348 : 113647 111 Escherichia_phage(22.58%) transposase,protease NA
DBSCAN-SWA_2 119168 : 176614 63 Escherichia_phage(39.29%) transposase,tail,integrase attL 154672:154731|attR 184477:184589
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
6. CP026208
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 218169 : 249581 23 Escherichia_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage