CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026322	Vibrio campbellii strain BoB-53 chromosome 2, complete sequence	0 crisprs	WYL,csa3,cas3	0	0	1	0
CP026321	Vibrio campbellii strain BoB-53 chromosome 1, complete sequence	0 crisprs	DEDDh,WYL,DinG,cas3,csx1,csa3,RT	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1177101 : 1209158

Tupanvirus(20.0%)

protease,holin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV88798.1\|1177101_1178469_+\|protease	serine protease	NA	NA	NA	NA
AUV88799.1\|1178478_1179270_+	hypothetical protein	A0A2K9L3L2	Tupanvirus	2.8e-24	29.9
AUV88800.1\|1179488_1180145_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
AUV88801.1\|1180307_1181492_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-26	35.2
AUV88802.1\|1181493_1182336_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
AUV88803.1\|1182398_1183337_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
AUV88804.1\|1183366_1185067_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	3.7e-53	29.8
AUV88805.1\|1185086_1186547_-	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
AUV88806.1\|1186563_1187163_-	transcriptional regulator BetI	NA	NA	NA	NA
AUV88807.1\|1187586_1188639_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	6.3e-19	37.3
AUV88808.1\|1188844_1189165_+	hypothetical protein	NA	NA	NA	NA
AUV88809.1\|1190078_1191341_-	amidohydrolase family protein	NA	NA	NA	NA
AUV89527.1\|1191564_1193010_-	hypothetical protein	NA	NA	NA	NA
AUV88810.1\|1193075_1193726_-	OmpA family protein	NA	NA	NA	NA
AUV88811.1\|1193734_1195282_-	pilus assembly protein TadG	NA	NA	NA	NA
AUV88812.1\|1195286_1195847_-	membrane associated secretion system protein	NA	NA	NA	NA
AUV88813.1\|1195833_1196316_-	pilus assembly protein	NA	NA	NA	NA
AUV88814.1\|1196318_1197041_-	anaphase-promoting protein	NA	NA	NA	NA
AUV88815.1\|1197052_1197895_-	type II secretion system F family protein	NA	NA	NA	NA
AUV88816.1\|1197891_1198794_-	type II secretion system protein F	NA	NA	NA	NA
AUV88817.1\|1198795_1200067_-	pilus assembly protein CpaF	NA	NA	NA	NA
AUV88818.1\|1200063_1201305_-	chromosome partitioning protein ParA	NA	NA	NA	NA
AUV88819.1\|1201307_1201784_-	hypothetical protein	NA	NA	NA	NA
AUV88820.1\|1201780_1203151_-	pilus assembly protein CpaC	NA	NA	NA	NA
AUV88821.1\|1203150_1203975_-	pilus assembly protein CpaB	NA	NA	NA	NA
AUV88822.1\|1203996_1204434_-	peptidase	NA	NA	NA	NA
AUV88823.1\|1204576_1204783_-	Flp family type IVb pilin	NA	NA	NA	NA
AUV88824.1\|1205249_1206140_+	LysR family transcriptional regulator	NA	NA	NA	NA
AUV88825.1\|1206298_1207348_-	alpha/beta hydrolase	NA	NA	NA	NA
AUV88826.1\|1208306_1209158_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.5e-55	44.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

557364 : 574577

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV85167.1\|557364_559005_+	CTP synthetase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.6e-154	52.1
AUV85168.1\|559083_560385_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.5e-136	60.3
AUV85169.1\|560735_561017_+	cell division protein FtsB	NA	NA	NA	NA
AUV85170.1\|561018_561729_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	2.4e-06	22.4
AUV85171.1\|561742_562219_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AUV85172.1\|562264_563308_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AUV85173.1\|563307_564084_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	5.4e-68	54.1
AUV85174.1\|564083_564710_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.8e-37	53.9
AUV85175.1\|564724_565648_+	hypothetical protein	D7RWE0	Brochothrix_phage	2.4e-06	36.4
AUV85176.1\|565728_566715_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	6.9e-36	35.2
AUV85177.1\|566804_569366_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.7e-33	22.7
AUV85178.1\|569451_569934_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.8e-26	48.1
AUV85179.1\|570134_571178_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.1e-111	60.7
AUV85180.1\|571384_571852_+	recombination regulator RecX	NA	NA	NA	NA
AUV85181.1\|571994_574577_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.9e-77	37.5

DBSCAN-SWA_2

1743258 : 1752671

Vibrio_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV86191.1\|1743258_1744332_-	hypothetical protein	O80263	Vibrio_phage	4.3e-124	60.7
AUV86192.1\|1744331_1744691_-	hypothetical protein	R9TIT8	Vibrio_phage	2.9e-24	46.6
AUV86193.1\|1744690_1746169_-	hypothetical protein	NA	NA	NA	NA
AUV86194.1\|1746318_1746558_-	hypothetical protein	NA	NA	NA	NA
AUV86195.1\|1746655_1746916_-	hypothetical protein	NA	NA	NA	NA
AUV86196.1\|1747184_1747493_-	chemotaxis protein	Q2PZB5	Vibrio_virus	5.7e-21	50.0
AUV86197.1\|1747576_1749604_-	replication endonuclease	A0A0F6YPA7	Vibrio_phage	1.5e-194	52.6
AUV86198.1\|1749607_1750225_-	DNA polymerase III subunit epsilon	W6ASW5	Vibrio_phage	3.5e-38	48.7
AUV86199.1\|1750403_1750772_+	hypothetical protein	A0A1W6UGD7	Vibrio_phage	8.8e-45	78.8
AUV86200.1\|1750940_1752671_-	hybrid sensor histidine kinase/response regulator	A0A1V0SGX0	Hokovirus	5.6e-41	31.5

DBSCAN-SWA_3

2730930 : 2737621

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV87022.1\|2730930_2731401_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	49.3
AUV87023.1\|2731570_2732680_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.0e-64	39.8
AUV87024.1\|2732839_2733493_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.3e-34	38.0
AUV87025.1\|2733504_2734629_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.7e-44	35.1
AUV87026.1\|2734636_2735086_-	transcriptional regulator NrdR	NA	NA	NA	NA
AUV87027.1\|2735213_2736464_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.3e-99	47.7
AUV87028.1\|2736481_2737621_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.9e-62	41.4

DBSCAN-SWA_4

2822998 : 2830070

Megavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV87097.1\|2822998_2823424_-	nucleoside-diphosphate kinase	L7Y4C4	Megavirus	2.1e-21	40.6
AUV87098.1\|2823524_2824823_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	9.1e-36	34.7
AUV87099.1\|2824995_2825190_-	Fe-S assembly protein IscX	NA	NA	NA	NA
AUV87100.1\|2825239_2825578_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AUV87101.1\|2825591_2827445_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	9.4e-111	40.4
AUV87102.1\|2827466_2827982_-	co-chaperone protein HscB	NA	NA	NA	NA
AUV87103.1\|2828037_2828361_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.0e-25	51.4
AUV87104.1\|2828434_2828818_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
AUV87105.1\|2828855_2830070_-	IscS subfamily cysteine desulfurase	A0A1X7C038	Faustovirus	7.4e-32	30.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026322

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026321

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection