CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026326	Helicobacter pylori strain 26695-dR chromosome, complete genome	0 crisprs	cas2,cas14j,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1018512 : 1062159

Helicobacter_phage(50.0%)

integrase,tRNA,transposase,protease

attL 1027166:1027181|attR 1057717:1057732

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV78101.1\|1018512_1019424_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
AUV78102.1\|1019437_1020376_-	glycerol-3-phosphate dehydrogenase (NAD(P)(+))	NA	NA	NA	NA
AUV78103.1\|1020507_1020969_-	acyl carrier protein	M4QDG5	Prochlorococcus_phage	1.3e-05	47.1
AUV78104.1\|1020961_1022305_-	ATPase	NA	NA	NA	NA
AUV78105.1\|1022301_1023393_-	hypothetical protein	NA	NA	NA	NA
AUV78106.1\|1023302_1024634_-	ATP/GTP-binding protein	NA	NA	NA	NA
AUV78107.1\|1024630_1026280_-	GTPase	NA	NA	NA	NA
AUV78108.1\|1026500_1026788_-	endoribonuclease VapD	NA	NA	NA	NA
AUV78109.1\|1026857_1027139_-	DUF3240 domain-containing protein	NA	NA	NA	NA
AUV78110.1\|1027154_1030217_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	2.8e-83	25.7
1027166:1027181	attL	NA	NA	NA	NA
AUV78111.1\|1030213_1031293_-	sodium:proton antiporter	NA	NA	NA	NA
AUV78717.1\|1031289_1032531_-	hypothetical protein	NA	NA	NA	NA
AUV78112.1\|1032580_1034686_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
AUV78113.1\|1034797_1035859_+	hypothetical protein	A0A2D1GN01	Pseudoalteromonas_phage	2.0e-09	30.1
AUV78114.1\|1035871_1037347_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
AUV78115.1\|1037361_1037643_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	NA	NA	NA	NA
AUV78116.1\|1037762_1039073_-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA	NA	NA	NA	NA
AUV78117.1\|1039201_1040665_+	peptidylprolyl isomerase	NA	NA	NA	NA
AUV78118.1\|1040680_1042159_+	cell division protein FtsA	NA	NA	NA	NA
AUV78119.1\|1042289_1043447_+	cell division protein FtsZ	NA	NA	NA	NA
AUV78120.1\|1044336_1044528_-	hypothetical protein	NA	NA	NA	NA
AUV78121.1\|1044604_1044907_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
AUV78718.1\|1044917_1045190_+	exonuclease VII large subunit	NA	NA	NA	NA
AUV78122.1\|1045561_1046257_+	hypothetical protein	NA	NA	NA	NA
AUV78123.1\|1046257_1046548_+	hypothetical protein	NA	NA	NA	NA
AUV78124.1\|1047106_1047931_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AUV78125.1\|1048140_1048464_-	hypothetical protein	NA	NA	NA	NA
AUV78126.1\|1048583_1048727_-	type II restriction endonuclease	NA	NA	NA	NA
AUV78127.1\|1048766_1049480_-	DUF1887 domain-containing protein	NA	NA	NA	NA
AUV78128.1\|1050863_1051097_+	hypothetical protein	NA	NA	NA	NA
AUV78129.1\|1051103_1051532_-\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	8.6e-76	97.9
AUV78130.1\|1051601_1052885_+\|transposase	transposase	A0A1S5REX3	Helicobacter_phage	2.6e-200	85.0
AUV78719.1\|1053033_1054836_+	relaxase	NA	NA	NA	NA
AUV78131.1\|1055985_1057053_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.7e-08	26.7
AUV78132.1\|1057369_1058173_-	hypothetical protein	NA	NA	NA	NA
1057717:1057732	attR	NA	NA	NA	NA
AUV78133.1\|1058144_1058396_-	hypothetical protein	NA	NA	NA	NA
AUV78720.1\|1058981_1059611_+	hypothetical protein	NA	NA	NA	NA
AUV78721.1\|1059615_1060329_-	hypothetical protein	NA	NA	NA	NA
AUV78134.1\|1060377_1061661_-\|transposase	transposase	A0A1S5REX3	Helicobacter_phage	1.2e-200	85.2
AUV78135.1\|1061730_1062159_+\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	8.6e-76	97.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage