CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026324	Helicobacter pylori strain 26695-dRdM2 chromosome, complete genome	0 crisprs	cas2,cas14j,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1018513 : 1070430

Helicobacter_phage(50.0%)

tRNA,transposase,integrase

attL 1029019:1029038|attR 1080353:1080372

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV79611.1\|1018513_1019425_-\|tRNA	glycine--tRNA ligase subunit alpha	NA	NA	NA	NA
AUV79612.1\|1020507_1020969_-	acyl carrier protein	M4QDG5	Prochlorococcus_phage	1.3e-05	47.1
AUV79613.1\|1020961_1022305_-	ATPase	NA	NA	NA	NA
AUV80223.1\|1022301_1023393_-	hypothetical protein	NA	NA	NA	NA
AUV79614.1\|1023302_1024634_-	ATP/GTP-binding protein	NA	NA	NA	NA
AUV79615.1\|1024630_1026280_-	GTPase	NA	NA	NA	NA
AUV79616.1\|1026500_1026788_-	endoribonuclease VapD	NA	NA	NA	NA
AUV79617.1\|1026857_1027139_-	DUF3240 domain-containing protein	NA	NA	NA	NA
AUV79618.1\|1027154_1030217_-	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	2.8e-83	25.7
1029019:1029038	attL	NA	NA	NA	NA
AUV79619.1\|1030213_1031293_-	sodium:proton antiporter	NA	NA	NA	NA
AUV80224.1\|1031289_1032531_-	hypothetical protein	NA	NA	NA	NA
AUV79620.1\|1032580_1034686_-\|tRNA	glycine--tRNA ligase subunit beta	NA	NA	NA	NA
AUV79621.1\|1034797_1035859_+	hypothetical protein	A0A2D1GN01	Pseudoalteromonas_phage	2.0e-09	30.1
AUV79622.1\|1035871_1037347_+	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA
AUV79623.1\|1037361_1037643_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit C	NA	NA	NA	NA
AUV79624.1\|1037762_1039073_-	adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA	NA	NA	NA	NA
AUV79625.1\|1039201_1040665_+	peptidylprolyl isomerase	NA	NA	NA	NA
AUV79626.1\|1040680_1042159_+	cell division protein FtsA	NA	NA	NA	NA
AUV79627.1\|1042289_1043447_+	cell division protein FtsZ	NA	NA	NA	NA
AUV79628.1\|1044336_1044528_-	hypothetical protein	NA	NA	NA	NA
AUV79629.1\|1044910_1045183_+	exonuclease VII large subunit	NA	NA	NA	NA
AUV79630.1\|1045554_1046250_+	hypothetical protein	NA	NA	NA	NA
AUV79631.1\|1046250_1046541_+	hypothetical protein	NA	NA	NA	NA
AUV79632.1\|1047099_1047924_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
AUV79633.1\|1048133_1048457_-	hypothetical protein	NA	NA	NA	NA
AUV79634.1\|1048576_1048720_-	type II restriction endonuclease	NA	NA	NA	NA
AUV79635.1\|1048759_1049473_-	DUF1887 domain-containing protein	NA	NA	NA	NA
AUV79636.1\|1050856_1051090_+	hypothetical protein	NA	NA	NA	NA
AUV79637.1\|1051096_1051525_-\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	8.6e-76	97.9
AUV79638.1\|1051594_1052878_+\|transposase	transposase	A0A1S5REX3	Helicobacter_phage	2.6e-200	85.0
AUV80225.1\|1053026_1054829_+	relaxase	NA	NA	NA	NA
AUV79639.1\|1055978_1057046_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.7e-08	26.7
AUV79640.1\|1057362_1058166_-	hypothetical protein	NA	NA	NA	NA
AUV79641.1\|1058137_1058389_-	hypothetical protein	NA	NA	NA	NA
AUV80226.1\|1058974_1059604_+	hypothetical protein	NA	NA	NA	NA
AUV80227.1\|1059608_1060322_-	hypothetical protein	NA	NA	NA	NA
AUV79642.1\|1060370_1061654_-\|transposase	transposase	A0A1S5REX3	Helicobacter_phage	1.2e-200	85.2
AUV79643.1\|1061723_1062152_+\|transposase	IS200/IS605 family transposase	A0A1S5RG71	Helicobacter_phage	8.6e-76	97.9
AUV79644.1\|1062733_1063390_+	ParA family protein	A2I303	Vibrio_virus	7.1e-05	23.4
AUV79645.1\|1063474_1063759_+	hypothetical protein	NA	NA	NA	NA
AUV79646.1\|1063802_1064987_+	hypothetical protein	NA	NA	NA	NA
AUV79647.1\|1067202_1067517_+	hypothetical protein	NA	NA	NA	NA
AUV79648.1\|1068067_1068601_-	conjugal transfer protein TraG	NA	NA	NA	NA
AUV79649.1\|1070013_1070430_+\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	4.6e-74	96.4
1080353:1080372	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage