CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP025398	Staphylococcus haemolyticus strain 83131B plasmid p83131B, complete sequence	0 crisprs	NA	0
CP025396	Staphylococcus haemolyticus strain 83131B chromosome, complete genome	0 crisprs	WYL,csa3,DEDDh,cas3,DinG	8
CP025397	Staphylococcus haemolyticus strain 83131B plasmid p83131A-B, complete sequence	0 crisprs	csa3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1100978 : 1142863

Staphylococcus_phage(90.0%)

transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV69540.1\|1100978_1102295_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-43	33.3
AUV69541.1\|1104173_1105568_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	7.9e-171	61.6
AUV69542.1\|1105569_1106577_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.4e-98	52.6
AUV69543.1\|1106573_1106810_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.4e-32	74.7
AUV69544.1\|1106876_1107350_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	5.4e-47	57.1
AUV69545.1\|1107330_1108101_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	6.7e-95	67.5
AUV69546.1\|1108164_1109757_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	5.2e-275	86.6
AUV69547.1\|1110147_1111344_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.5e-197	87.2
AUV69548.1\|1111437_1112346_+	hypothetical protein	A0A2H4PQQ8	Staphylococcus_phage	1.3e-108	80.2
AUV69549.1\|1112624_1113461_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.3e-123	74.7
AUV69550.1\|1113525_1113879_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	2.2e-05	30.8
AUV69551.1\|1113875_1114241_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.9e-34	59.3
AUV69552.1\|1114333_1114639_-	hypothetical protein	NA	NA	NA	NA
AUV69553.1\|1114902_1115616_+	transaldolase	M1PR54	Cyanophage	5.0e-20	35.0
AUV69554.1\|1115836_1116307_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	1.7e-16	41.2
AUV69555.1\|1116290_1116737_-	competence protein ComK	NA	NA	NA	NA
AUV69556.1\|1116738_1117215_-	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.6e-30	47.4
AUV69557.1\|1117471_1117693_+	hypothetical protein	NA	NA	NA	NA
AUV69558.1\|1117900_1118752_+	autolysin	A0A1J0MFB0	Staphylococcus_phage	1.7e-35	36.9
AUV69559.1\|1118958_1120275_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.2e-43	32.0
AUV69560.1\|1120585_1122076_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	9.8e-18	80.7
AUV69561.1\|1122510_1123554_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.2e-128	62.4
AUV69562.1\|1123560_1124193_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.5e-79	68.1
AUV69563.1\|1124208_1125390_+	riboflavin biosynthesis protein RibBA	A0A2H4PQS2	Staphylococcus_phage	4.7e-172	73.5
AUV69564.1\|1125401_1125860_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	7.8e-59	85.3
AUV69565.1\|1125911_1126913_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	2.5e-134	71.2
AUV69566.1\|1127137_1127965_+	alpha/beta hydrolase	NA	NA	NA	NA
AUV69567.1\|1128406_1129579_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AUV69568.1\|1129765_1130167_+	transcriptional regulator	NA	NA	NA	NA
AUV69569.1\|1130306_1130867_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	3.3e-75	72.4
AUV69570.1\|1130863_1131823_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.0e-68	85.4
AUV69571.1\|1131933_1133121_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	3.9e-179	79.2
AUV69572.1\|1133419_1135834_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	86.2
AUV69573.1\|1135854_1136166_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	2.8e-36	72.8
AUV69574.1\|1136392_1142863_+	YSIRK signal domain/LPXTG anchor domain surface protein	A0A2H4PQU6	Staphylococcus_phage	2.0e-11	29.6

DBSCAN-SWA_2

1411380 : 1423417

uncultured_Mediterranean_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV69817.1\|1411380_1412289_-	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	3.4e-05	31.7
AUV69818.1\|1412370_1412913_+	NUDIX hydrolase	NA	NA	NA	NA
AUV69819.1\|1413017_1413464_+	transcriptional repressor	NA	NA	NA	NA
AUV69820.1\|1413563_1414451_+	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	3.6e-36	30.7
AUV69821.1\|1414553_1415075_-	DUF309 domain-containing protein	NA	NA	NA	NA
AUV69822.1\|1415168_1415900_+	segregation and condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.2e-08	24.4
AUV69823.1\|1415892_1416432_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.2e-10	31.2
AUV69824.1\|1417316_1418042_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	4.1e-46	41.3
AUV69825.1\|1418022_1419780_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.7e-24	32.3
AUV69826.1\|1420119_1420662_+	ECF transporter S component	NA	NA	NA	NA
AUV69827.1\|1420733_1420982_-	ferredoxin	A0A127AYY7	Bacillus_phage	5.8e-16	49.3
AUV69828.1\|1421091_1422045_+	hypothetical protein	NA	NA	NA	NA
AUV69829.1\|1422037_1423417_+	ATP-dependent DNA helicase RecQ	A0A0G2Y8K9	Acanthamoeba_polyphaga_mimivirus	3.8e-56	33.3

DBSCAN-SWA_3

1606695 : 1677009

Staphylococcus_phage(67.92%)

holin,head,tail,tRNA,portal,terminase,transposase,capsid,protease,integrase

attL 1644411:1644470|attR 1678978:1680304

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV70905.1\|1606695_1607055_-	hypothetical protein	A0A1J0MFV1	Staphylococcus_phage	9.2e-23	44.8
AUV69984.1\|1607149_1607902_-	hypothetical protein	Q4ZE35	Staphylococcus_virus	4.1e-73	61.6
AUV69985.1\|1608071_1608251_-	hypothetical protein	NA	NA	NA	NA
AUV69986.1\|1608517_1608730_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	6.4e-16	62.3
AUV69987.1\|1609113_1609845_-	hypothetical protein	A7YGY5	Staphylococcus_virus	6.7e-36	36.4
AUV69988.1\|1609851_1610625_-	hypothetical protein	Q4ZAU0	Staphylococcus_virus	5.6e-49	41.0
AUV69989.1\|1610806_1611724_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JNM6	Staphylococcus_phage	1.5e-64	61.5
AUV70906.1\|1611770_1612154_-\|holin	holin	H9A0W5	Staphylococcus_phage	3.1e-16	38.6
AUV69990.1\|1612215_1613493_-	DUF2479 domain-containing protein	A0A1J0MFQ3	Staphylococcus_phage	2.6e-136	57.2
AUV69991.1\|1613510_1614539_-	SGNH/GDSL hydrolase family protein	Q8LTH0	Staphylococcus_virus	2.3e-98	56.1
AUV69992.1\|1614549_1615131_-	hypothetical protein	A0A1J0MFH9	Staphylococcus_phage	5.9e-27	50.0
AUV69993.1\|1615111_1615330_-	hypothetical protein	A0A1J0MF94	Staphylococcus_phage	1.8e-05	69.4
AUV69994.1\|1615326_1616487_-	peptidase	A0A0K1LL06	Staphylococcus_phage	2.4e-112	42.1
AUV69995.1\|1616497_1617325_-\|tail	phage tail family protein	A0A2I6PDE7	Staphylococcus_phage	2.0e-97	60.1
AUV69996.1\|1617324_1623273_-\|tail	phage tail tape measure protein	A0A2I6PDS2	Staphylococcus_phage	0.0e+00	59.7
AUV69997.1\|1623514_1623856_-	hypothetical protein	A0A2I6PEQ2	Staphylococcus_phage	9.6e-38	71.2
AUV69998.1\|1623899_1624130_-\|tail	phage tail protein	W5RA14	Staphylococcus_phage	1.6e-07	39.2
AUV69999.1\|1624145_1624901_-\|tail	phage tail protein	A0A2K9VBP7	Staphylococcus_phage	1.2e-85	70.6
AUV70000.1\|1624940_1625336_-	hypothetical protein	A0A0K1LKC0	Staphylococcus_phage	2.7e-39	58.0
AUV70001.1\|1625332_1625740_-	hypothetical protein	A0A2I6PF54	Staphylococcus_phage	5.0e-33	57.1
AUV70002.1\|1625736_1626069_-	hypothetical protein	A0A2I6PDD6	Staphylococcus_phage	1.8e-28	55.0
AUV70003.1\|1626078_1626357_-\|head,tail	phage gp6-like head-tail connector protein	A0A2I6PEQ1	Staphylococcus_phage	2.1e-27	64.1
AUV70004.1\|1626427_1627582_-\|capsid	phage major capsid protein	A0A2I6PDD7	Staphylococcus_phage	1.9e-149	70.0
AUV70005.1\|1627594_1628314_-\|protease	Clp protease ClpP	M1TAZ4	Staphylococcus_phage	4.3e-88	67.3
AUV70006.1\|1628270_1629536_-\|portal	phage portal protein	A0A2I6PF26	Staphylococcus_phage	5.1e-193	79.7
AUV70007.1\|1629540_1631232_-\|terminase	terminase large subunit	M9QX14	Staphylococcus_phage	1.5e-288	84.2
AUV70008.1\|1631221_1631530_-\|terminase	phage terminase small subunit P27 family	U5U414	Staphylococcus_phage	5.4e-40	82.4
AUV70009.1\|1631669_1631984_-	HNH endonuclease	A0A2I6PDC4	Staphylococcus_phage	3.0e-38	74.0
AUV70010.1\|1632135_1632570_-	transcriptional regulator	A7TWI7	Staphylococcus_phage	4.1e-57	77.6
AUV70011.1\|1632590_1633244_-	hypothetical protein	NA	NA	NA	NA
AUV70012.1\|1633290_1633755_-	hypothetical protein	NA	NA	NA	NA
AUV70013.1\|1633838_1634324_+	hypothetical protein	NA	NA	NA	NA
AUV70014.1\|1634330_1634642_-	hypothetical protein	A0A2H4JF73	uncultured_Caudovirales_phage	2.5e-40	78.6
AUV70015.1\|1634642_1635089_-	hypothetical protein	NA	NA	NA	NA
AUV70016.1\|1635085_1635769_-	hypothetical protein	A0A2H4JEF6	uncultured_Caudovirales_phage	4.0e-99	75.2
AUV70907.1\|1635771_1636095_-	DUF3310 domain-containing protein	A0A1W6JQJ4	Staphylococcus_phage	7.5e-40	71.4
AUV70017.1\|1636223_1636448_-	hypothetical protein	A0A1W6JQG7	Staphylococcus_phage	3.4e-07	43.8
AUV70018.1\|1636431_1636617_-	hypothetical protein	A0A2H4JG42	uncultured_Caudovirales_phage	6.8e-14	69.4
AUV70019.1\|1636617_1637022_-	RusA family crossover junction endodeoxyribonuclease	A0A2H4J5E6	uncultured_Caudovirales_phage	7.1e-56	79.1
AUV70020.1\|1637034_1637277_-	hypothetical protein	A0A2H4J5E3	uncultured_Caudovirales_phage	4.3e-32	79.7
AUV70021.1\|1637427_1638234_-	DNA replication protein DnaC	A0A2I6PDV5	Staphylococcus_phage	6.3e-96	69.3
AUV70022.1\|1639062_1639851_+	hypothetical protein	NA	NA	NA	NA
AUV70023.1\|1639840_1640521_-	hypothetical protein	A0A2H4J6I4	uncultured_Caudovirales_phage	9.1e-104	82.0
AUV70024.1\|1640521_1641070_-	HNH endonuclease	A0A1W6JNF8	Staphylococcus_phage	4.9e-84	82.4
AUV70025.1\|1641082_1641517_-	single-stranded DNA-binding protein	I1W659	Staphylococcus_phage	5.3e-49	63.7
AUV70026.1\|1641513_1642188_-	single-stranded DNA-binding protein	Q4ZCA1	Staphylococcus_virus	4.1e-80	70.5
AUV70027.1\|1642188_1642674_-	hypothetical protein	H9A0R4	Staphylococcus_phage	1.4e-66	82.6
AUV70028.1\|1642657_1642921_-	hypothetical protein	A0A1W6JP63	Staphylococcus_phage	4.0e-15	48.2
AUV70029.1\|1642989_1643169_-	hypothetical protein	A0A2H4JAZ6	uncultured_Caudovirales_phage	5.4e-08	59.3
AUV70030.1\|1643181_1643460_-	hypothetical protein	NA	NA	NA	NA
AUV70031.1\|1643518_1643710_-	XRE family transcriptional regulator	A0A2I6PEL6	Staphylococcus_phage	8.6e-20	69.8
AUV70032.1\|1643872_1644214_+	XRE family transcriptional regulator	A0A2I6PEN2	Staphylococcus_phage	4.5e-27	59.6
1644411:1644470	attL	NA	NA	NA	NA
AUV70033.1\|1644460_1645633_-\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AUV70034.1\|1645754_1646054_+	hypothetical protein	NA	NA	NA	NA
AUV70035.1\|1646081_1646771_+	VanZ family protein	NA	NA	NA	NA
AUV70036.1\|1646837_1647962_+\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	2.7e-36	29.7
AUV70037.1\|1648105_1649446_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
AUV70038.1\|1649466_1649832_-	MerR family transcriptional regulator	NA	NA	NA	NA
AUV70039.1\|1650034_1651273_-	hypothetical protein	NA	NA	NA	NA
AUV70040.1\|1651292_1652531_-	GTPase HflX	NA	NA	NA	NA
AUV70041.1\|1652640_1653117_+	glutathione peroxidase	Q70H87	Fowlpox_virus	1.1e-26	42.0
AUV70042.1\|1653309_1653552_-	RNA chaperone Hfq	NA	NA	NA	NA
AUV70043.1\|1653505_1654504_-\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
AUV70044.1\|1654519_1655443_-	lysophospholipase	NA	NA	NA	NA
AUV70045.1\|1655735_1657409_-	aerobic glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
AUV70046.1\|1657561_1659061_-	glycerol kinase	NA	NA	NA	NA
AUV70047.1\|1659191_1660010_-	aquaporin	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	1.6e-30	35.7
AUV70048.1\|1660236_1660770_-	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
AUV70049.1\|1660785_1662813_-	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.5e-53	38.6
AUV70050.1\|1662825_1665477_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	5.6e-40	25.8
AUV70051.1\|1665743_1666235_-	energy coupling factor transporter S component ThiW	NA	NA	NA	NA
AUV70052.1\|1666256_1666622_-	hypothetical protein	NA	NA	NA	NA
AUV70053.1\|1666622_1668167_-\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
AUV70054.1\|1668465_1668762_-	hypothetical protein	NA	NA	NA	NA
AUV70055.1\|1668822_1669434_-	hypothetical protein	A0A0D3MVF0	Staphylococcus_phage	3.0e-42	43.3
AUV70056.1\|1669660_1670527_-	2-oxoacid ferredoxin oxidoreductase	NA	NA	NA	NA
AUV70057.1\|1670527_1672288_-	2-oxoacid:acceptor oxidoreductase subunit alpha	NA	NA	NA	NA
AUV70058.1\|1672422_1673217_-	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
AUV70059.1\|1673375_1673591_+	hypothetical protein	NA	NA	NA	NA
AUV70060.1\|1673862_1675422_-	ribonuclease Y	NA	NA	NA	NA
AUV70061.1\|1675836_1677009_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
1678978:1680304	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1887142 : 1895612

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV70249.1\|1887142_1887709_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	4.7e-29	40.3
AUV70250.1\|1887708_1888740_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.7e-69	45.5
AUV70251.1\|1888732_1890217_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.7e-47	33.6
AUV70252.1\|1890195_1892385_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	8.2e-138	39.5
AUV70253.1\|1892377_1893049_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
AUV70254.1\|1893050_1893311_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
AUV70255.1\|1893310_1894015_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.8e-47	42.5
AUV70256.1\|1894018_1895143_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
AUV70257.1\|1895129_1895612_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	8.0e-22	46.0

DBSCAN-SWA_5

2122041 : 2135974

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV70466.1\|2122041_2122824_-	iron ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	1.4e-15	29.6
AUV70467.1\|2122820_2123780_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	5.7e-11	72.0
AUV70468.1\|2123769_2124738_-	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.7e-151	88.5
AUV70469.1\|2124987_2125956_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.4e-177	94.7
AUV70470.1\|2126083_2128189_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	94.0
AUV70471.1\|2128151_2128550_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.9e-53	75.8
AUV70472.1\|2129323_2130223_+	EamA/RhaT family transporter	NA	NA	NA	NA
AUV70473.1\|2130228_2130729_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.7e-51	70.8
AUV70474.1\|2131029_2132535_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.9e-61	32.7
AUV70918.1\|2133211_2134138_+	lipid kinase	NA	NA	NA	NA
AUV70475.1\|2134210_2134744_-	5'(3')-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	8.0e-31	39.0
AUV70476.1\|2134918_2135974_-	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	2.8e-19	26.7

DBSCAN-SWA_6

2150270 : 2158418

Pandoravirus(12.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV70488.1\|2150270_2151416_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	5.4e-24	34.9
AUV70489.1\|2151399_2151993_-	type 1 glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	7.1e-36	40.1
AUV70490.1\|2152355_2153027_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	4.1e-64	55.4
AUV70491.1\|2153028_2153448_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	2.2e-07	26.9
AUV70492.1\|2153447_2154164_+	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	1.6e-50	41.9
AUV70493.1\|2154268_2154880_+	hypothetical protein	NA	NA	NA	NA
AUV70494.1\|2154930_2155920_-	glycosyltransferase	A8CG95	Salmonella_phage	5.3e-60	41.2
AUV70495.1\|2156208_2157525_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.4e-44	32.0
AUV70496.1\|2157578_2158418_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	3.6e-62	44.4

DBSCAN-SWA_7

2221021 : 2272302

Staphylococcus_phage(42.86%)

transposase,integrase,tRNA

attL 2220917:2220976|attR 2264111:2265438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2220917:2220976	attL	NA	NA	NA	NA
AUV70555.1\|2221021_2222194_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AUV70556.1\|2222301_2223594_+	DUF1958 domain-containing protein	NA	NA	NA	NA
AUV70557.1\|2223848_2224247_-	glycerol-3-phosphate cytidylyltransferase	A0A222YWT0	Streptomyces_phage	6.0e-15	38.5
AUV70558.1\|2224345_2225410_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	5.6e-07	37.6
AUV70559.1\|2225406_2226495_-	CDP-glycerol glycerophosphotransferase family protein	NA	NA	NA	NA
AUV70560.1\|2226604_2227417_-	ABC transporter permease	NA	NA	NA	NA
AUV70561.1\|2227743_2228538_+	teichoic acids export ABC transporter ATP-binding subunit TagH	A0A2H4PQG7	Staphylococcus_phage	9.9e-09	27.3
AUV70562.1\|2228634_2229399_-	glycosyltransferase	NA	NA	NA	NA
AUV70563.1\|2229619_2230363_+	hypothetical protein	NA	NA	NA	NA
AUV70564.1\|2230443_2231760_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.6e-43	33.3
AUV70565.1\|2231930_2232578_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
AUV70566.1\|2232750_2234793_-	sodium:proton antiporter	NA	NA	NA	NA
AUV70567.1\|2235172_2236414_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AUV70568.1\|2236512_2236752_+	DUF3923 domain-containing protein	NA	NA	NA	NA
AUV70569.1\|2237157_2237547_+	hypothetical protein	NA	NA	NA	NA
AUV70570.1\|2237611_2238127_-	cation:proton antiporter	NA	NA	NA	NA
AUV70571.1\|2238101_2238404_-	cation:proton antiporter	NA	NA	NA	NA
AUV70572.1\|2238400_2238883_-	Na+/H+ antiporter subunit E	NA	NA	NA	NA
AUV70573.1\|2238879_2240379_-	Na+/H+ antiporter subunit D	NA	NA	NA	NA
AUV70574.1\|2240368_2240719_-	antiporter	NA	NA	NA	NA
AUV70575.1\|2240715_2241141_-	Na(+)/H(+) antiporter subunit B	NA	NA	NA	NA
AUV70576.1\|2241127_2243530_-	cation:proton antiporter	NA	NA	NA	NA
AUV70577.1\|2243558_2244116_-\|integrase	integrase	A0A141E172	Streptococcus_phage	2.4e-25	37.0
AUV70578.1\|2244258_2244465_+	hypothetical protein	NA	NA	NA	NA
AUV70579.1\|2244499_2244721_+	DUF2922 domain-containing protein	NA	NA	NA	NA
AUV70580.1\|2245022_2245949_+	hypothetical protein	NA	NA	NA	NA
AUV70581.1\|2246098_2247025_+	HlyD family secretion protein	NA	NA	NA	NA
AUV70582.1\|2247348_2247723_+	transcriptional regulator	NA	NA	NA	NA
AUV70583.1\|2247944_2249261_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	5.4e-44	32.0
AUV70584.1\|2249462_2250272_-	alpha/beta hydrolase	A0A2K9KZN8	Tupanvirus	5.5e-07	34.0
AUV70585.1\|2250548_2251265_-	hypothetical protein	NA	NA	NA	NA
AUV70586.1\|2251448_2251955_-	hypothetical protein	NA	NA	NA	NA
AUV70587.1\|2252108_2252903_-	alpha/beta hydrolase	NA	NA	NA	NA
AUV70588.1\|2252904_2253609_-	HAD family hydrolase	NA	NA	NA	NA
AUV70589.1\|2253708_2254662_-	iron ABC transporter permease	NA	NA	NA	NA
AUV70590.1\|2254963_2255875_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUV70591.1\|2256057_2256555_-	DUF805 domain-containing protein	NA	NA	NA	NA
AUV70592.1\|2256620_2257385_-	MerR family transcriptional regulator	NA	NA	NA	NA
AUV70593.1\|2257483_2258122_-	endonuclease III	NA	NA	NA	NA
AUV70594.1\|2258206_2259868_-\|tRNA	arginine--tRNA ligase	NA	NA	NA	NA
AUV70595.1\|2259864_2260293_-	DUF1934 domain-containing protein	NA	NA	NA	NA
AUV70596.1\|2262537_2262756_+	hypothetical protein	NA	NA	NA	NA
AUV70597.1\|2263423_2263672_+	hypothetical protein	NA	NA	NA	NA
AUV70598.1\|2264020_2264116_+	hypothetical protein	NA	NA	NA	NA
AUV70599.1\|2264215_2265388_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AUV70919.1\|2265444_2265837_+	N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
2264111:2265438	attR	NA	NA	NA	NA
AUV70600.1\|2265837_2267277_+	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A1X9I6C2	Streptococcus_phage	3.8e-285	100.0
AUV70601.1\|2267406_2268579_-\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
AUV70602.1\|2268832_2269603_-	hypothetical protein	NA	NA	NA	NA
AUV70603.1\|2269604_2270300_-	lantibiotic ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.8e-38	39.0
AUV70604.1\|2270835_2272302_+	ABC-F type ribosomal protection protein Msr(A)	A0A2I4R674	Erysipelothrix_phage	3.9e-67	37.9

DBSCAN-SWA_8

2496953 : 2542039

Staphylococcus_phage(26.32%)

transposase,integrase,terminase

attL 2501022:2501081|attR 2545258:2546047

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUV70784.1\|2496953_2497223_-	hypothetical protein	A0A2H4JBE4	uncultured_Caudovirales_phage	1.0e-42	94.4
AUV70785.1\|2497228_2497801_-\|terminase	terminase small subunit	A0A2H4JBF3	uncultured_Caudovirales_phage	2.1e-98	95.3
AUV70786.1\|2497802_2498141_-	helix-turn-helix transcriptional regulator	A0A2H4JEH8	uncultured_Caudovirales_phage	8.9e-44	82.1
AUV70787.1\|2498137_2498587_-	pathogenicity island protein	A0A2H4JBD6	uncultured_Caudovirales_phage	3.9e-63	86.4
AUV70788.1\|2498809_2499484_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.4e-127	98.7
AUV70789.1\|2499504_2500239_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA
AUV70790.1\|2500750_2500840_-	erm Leader peptide	NA	NA	NA	NA
2501022:2501081	attL	NA	NA	NA	NA
AUV70791.1\|2501078_2501753_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.4e-127	98.7
AUV70792.1\|2501793_2501982_-	hypothetical protein	A0A1B0RXM3	Streptococcus_phage	4.3e-24	98.2
AUV70793.1\|2502005_2502221_-	WYL domain-containing protein	E4ZFP5	Streptococcus_phage	3.4e-33	98.6
AUV70794.1\|2502853_2503648_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
AUV70795.1\|2503740_2504283_-	streptothricin N-acetyltransferase Sat4	A0A1B0RXL7	Streptococcus_phage	2.6e-93	99.4
AUV70796.1\|2505042_2505321_-	hypothetical protein	NA	NA	NA	NA
AUV70797.1\|2505323_2505755_-	ParA family protein	NA	NA	NA	NA
AUV70798.1\|2505786_2506461_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.4e-127	98.7
AUV70799.1\|2506570_2507227_+	replication protein RepB	NA	NA	NA	NA
AUV70800.1\|2507908_2508232_-	QacCGHJ group quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
AUV70801.1\|2508336_2509011_-\|transposase	IS6-like element IS257 family transposase	A0A0N9RU54	Staphylococcus_phage	1.5e-127	99.1
AUV70802.1\|2509477_2510323_-	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	A0A1B0VBP7	Salmonella_phage	1.5e-31	34.0
AUV70803.1\|2510429_2512187_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA
AUV70804.1\|2512176_2512557_+	penicillinase repressor BlaI	NA	NA	NA	NA
AUV70805.1\|2512820_2513399_+	HTH domain-containing protein	A0A0A7NPV4	Enterobacteria_phage	6.4e-42	51.7
AUV70806.1\|2513987_2515481_-	aldehyde dehydrogenase	NA	NA	NA	NA
AUV70807.1\|2515830_2516961_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
AUV70808.1\|2517162_2517585_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUV70809.1\|2518228_2518831_-	hypothetical protein	NA	NA	NA	NA
AUV70810.1\|2519042_2519735_-	nucleotidyltransferase	NA	NA	NA	NA
AUV70811.1\|2520931_2521315_-	transcriptional regulator	NA	NA	NA	NA
AUV70812.1\|2521554_2522085_-	N-acetyltransferase	A0A1P8CWJ6	Bacillus_phage	5.7e-53	59.3
AUV70813.1\|2522688_2522814_-	Rep protein	NA	NA	NA	NA
AUV70814.1\|2524063_2524297_-	hypothetical protein	NA	NA	NA	NA
AUV70815.1\|2524743_2525373_+	LysE family translocator	NA	NA	NA	NA
AUV70816.1\|2525396_2525975_+	histidine phosphatase family protein	NA	NA	NA	NA
AUV70817.1\|2526074_2526701_-	NDxxF motif lipoprotein	NA	NA	NA	NA
AUV70818.1\|2527041_2528565_-	alkyl hydroperoxide reductase subunit F	A0A249XZT7	Enterococcus_phage	7.1e-40	33.4
AUV70819.1\|2528579_2529149_-	peroxiredoxin	NA	NA	NA	NA
AUV70820.1\|2529569_2530349_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
AUV70821.1\|2530506_2531262_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
AUV70822.1\|2531345_2532734_-	L-cystine transporter	NA	NA	NA	NA
AUV70923.1\|2533021_2533672_-	DNA-binding protein	NA	NA	NA	NA
AUV70823.1\|2533790_2534459_-	hypothetical protein	NA	NA	NA	NA
AUV70824.1\|2534606_2535014_-	hypothetical protein	NA	NA	NA	NA
AUV70825.1\|2535592_2536174_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA
AUV70826.1\|2536170_2537439_+	purine permease	NA	NA	NA	NA
AUV70827.1\|2537477_2538944_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.7e-92	39.0
AUV70828.1\|2539117_2540659_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	7.2e-24	32.6
AUV70829.1\|2540824_2542039_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	1.4e-91	46.1
2545258:2546047	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage