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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025992 Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2A, complete sequence 0 crisprs NA 0 0 0 0
CP025991 Lactobacillus plantarum subsp. plantarum strain LB1-2 chromosome, complete genome 1 crisprs cas3,DEDDh,DinG,csa3,WYL 0 0 11 0
CP025994 Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2C, complete sequence 0 crisprs NA 0 0 0 0
CP025993 Lactobacillus plantarum subsp. plantarum strain LB1-2 plasmid pLB1-2B, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP025991
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025991_1 2815886-2815971 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 932 : 25815 27 Lactobacillus_phage(45.83%) tail,portal,terminase,capsid,lysis NA
DBSCAN-SWA_2 690965 : 706395 18 Lactobacillus_phage(50.0%) tail,plate,holin NA
DBSCAN-SWA_3 718384 : 730304 18 Lactobacillus_phage(90.0%) integrase attL 717399:717410|attR 730409:730420
DBSCAN-SWA_4 945456 : 954465 9 Lactobacillus_phage(100.0%) NA NA
DBSCAN-SWA_5 1158303 : 1246527 91 Lactobacillus_phage(62.26%) tail,head,integrase,portal,terminase,holin,capsid,tRNA attL 1213638:1213653|attR 1229550:1229565
DBSCAN-SWA_6 1285259 : 1356163 87 Lactobacillus_phage(63.89%) tail,head,portal,transposase,integrase,terminase,capsid attL 1287511:1287526|attR 1360406:1360421
DBSCAN-SWA_7 1711941 : 1719861 11 Lactobacillus_phage(100.0%) holin NA
DBSCAN-SWA_8 1729451 : 1750288 37 Lactobacillus_phage(72.73%) capsid,terminase NA
DBSCAN-SWA_9 1873971 : 1942601 67 uncultured_Mediterranean_phage(20.0%) protease,bacteriocin,tRNA NA
DBSCAN-SWA_10 3158519 : 3167033 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_11 3344347 : 3358462 24 Lactobacillus_phage(73.33%) integrase attL 3342406:3342420|attR 3352630:3352644
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage