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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP018049 Pseudomonas orientalis strain F9, complete genome 7 crisprs DEDDh,DinG,csa3,cas3 1 0 5 0

Results visualization

1. CP018049
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_1 50091-50186 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_3 2298817-2298912 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_4 2304169-2304263 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_5 3032845-3032951 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_6 3151509-3151610 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_7 3309486-3309579 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP018049_8 3671880-3671987 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP018049_3 3.1|2298841|48|CP018049|CRISPRCasFinder 2298841-2298888 48 CP018049.1 2207454-2207501 0 1.0
CP018049_3 3.1|2298841|48|CP018049|CRISPRCasFinder 2298841-2298888 48 CP018049.1 2304321-2304368 1 0.979
CP018049_3 3.1|2298841|48|CP018049|CRISPRCasFinder 2298841-2298888 48 CP018049.1 2588378-2588425 1 0.979

1. spacer 3.1|2298841|48|CP018049|CRISPRCasFinder matches to position: 2207454-2207501, mismatch: 0, identity: 1.0

caaccgacgggtatccatctgacacacctcggtccaaatgtgggaggg	CRISPR spacer
caaccgacgggtatccatctgacacacctcggtccaaatgtgggaggg	Protospacer
************************************************

2. spacer 3.1|2298841|48|CP018049|CRISPRCasFinder matches to position: 2304321-2304368, mismatch: 1, identity: 0.979

caaccgacgggtatccatctgacacacctcggtccaaatgtgggaggg	CRISPR spacer
caaccgacgggtatccatctgacgcacctcggtccaaatgtgggaggg	Protospacer
***********************.************************

3. spacer 3.1|2298841|48|CP018049|CRISPRCasFinder matches to position: 2588378-2588425, mismatch: 1, identity: 0.979

caaccgacgggtatccatctgacacacctcggtccaaatgtgggaggg	CRISPR spacer
catccgacgggtatccatctgacacacctcggtccaaatgtgggaggg	Protospacer
** *********************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1297692 : 1382340 90 uncultured_Caudovirales_phage(25.81%) tail,tRNA,plate,holin,lysis NA
DBSCAN-SWA_2 1448342 : 1453270 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_3 3084593 : 3143857 78 Pseudomonas_phage(55.17%) terminase,tail,integrase,head,lysis attL 3084318:3084362|attR 3142254:3142298
DBSCAN-SWA_4 3506663 : 3574081 75 uncultured_Caudovirales_phage(67.39%) terminase,tail,integrase,tRNA,head,protease,plate,capsid,portal,holin,transposase,lysis attL 3500910:3500927|attR 3559355:3559372
DBSCAN-SWA_5 3691382 : 3732521 33 Mollivirus(14.29%) protease,coat,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage