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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026231 Citrobacter freundii complex sp. CFNIH4 chromosome, complete genome 0 crisprs DEDDh,RT,WYL,DinG,cas3,csa3,PD-DExK 0 0 15 0
CP026234 Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence 0 crisprs DinG,csa3 0 0 13 0
CP026232 Citrobacter freundii complex sp. CFNIH4 plasmid pKPC-c9fd, complete sequence 0 crisprs NA 0 0 0 0
CP026233 Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-0b27, complete sequence 0 crisprs DEDDh,RT 0 0 2 0

Results visualization

1. CP026231
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 341027 : 429221 107 Salmonella_phage(38.03%) protease,integrase,tail,holin,head,plate,transposase,lysis attL 337867:337926|attR 429304:430072
DBSCAN-SWA_2 1299035 : 1374761 91 Enterobacteria_phage(28.57%) portal,integrase,tail,holin,head,transposase,terminase,tRNA,capsid attL 1294922:1294937|attR 1318617:1318632
DBSCAN-SWA_3 1456939 : 1466977 10 Brazilian_cedratvirus(28.57%) tRNA NA
DBSCAN-SWA_4 1695391 : 1721283 20 Stx2-converting_phage(33.33%) integrase,transposase attL 1698681:1698696|attR 1716839:1716854
DBSCAN-SWA_5 1727208 : 1747982 20 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_6 2126757 : 2203513 96 Enterobacteria_phage(28.3%) protease,integrase,tail,holin,coat,head,transposase,terminase attL 2155569:2155598|attR 2201282:2201311
DBSCAN-SWA_7 2230183 : 2265234 45 Salmonella_phage(28.57%) portal,coat,lysis,tail NA
DBSCAN-SWA_8 2419685 : 2427310 7 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_9 2478498 : 2488076 8 Bacillus_phage(28.57%) protease NA
DBSCAN-SWA_10 2540179 : 2548598 9 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_11 2636705 : 2639957 6 Enterobacteria_phage(33.33%) NA NA
DBSCAN-SWA_12 2643181 : 2681296 54 Enterobacteria_phage(27.27%) portal,tail,holin,transposase,terminase NA
DBSCAN-SWA_13 3409161 : 3466983 56 Bacillus_phage(21.05%) integrase,transposase attL 3409106:3409165|attR 3465871:3466930
DBSCAN-SWA_14 3862835 : 3944505 82 uncultured_Caudovirales_phage(47.37%) protease,portal,integrase,tail,head,transposase,terminase,tRNA,capsid attL 3899852:3899869|attR 3920838:3920855
DBSCAN-SWA_15 4523575 : 4608387 97 Salmonella_phage(73.81%) protease,portal,integrase,tail,holin,plate,terminase,tRNA,capsid attL 4541481:4541501|attR 4591730:4591750
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP026234
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 15500 25 Salmonella_phage(75.0%) NA NA
DBSCAN-SWA_2 18555 : 53087 36 Stx2-converting_phage(30.0%) transposase,integrase attL 17483:17496|attR 50356:50369
DBSCAN-SWA_3 58310 : 65986 7 Salmonella_phage(80.0%) transposase NA
DBSCAN-SWA_4 72230 : 74070 3 Salmonella_phage(50.0%) NA NA
DBSCAN-SWA_5 79098 : 88538 11 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_6 92417 : 93260 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_7 102456 : 103074 1 Escherichia_phage(100.0%) NA NA
DBSCAN-SWA_8 108536 : 117176 15 Escherichia_phage(25.0%) NA NA
DBSCAN-SWA_9 133196 : 226736 85 Escherichia_phage(20.0%) transposase NA
DBSCAN-SWA_10 243173 : 248608 6 Salmonella_phage(50.0%) transposase NA
DBSCAN-SWA_11 252967 : 257634 7 Salmonella_phage(66.67%) NA NA
DBSCAN-SWA_12 260645 : 261122 1 Salmonella_phage(100.0%) NA NA
DBSCAN-SWA_13 264667 : 276015 12 Morganella_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. CP026233
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 34013 : 64534 45 Acidithiobacillus_phage(16.67%) head,transposase,tail NA
DBSCAN-SWA_2 105435 : 155786 56 Escherichia_phage(24.0%) integrase,transposase attL 134419:134478|attR 150866:151067
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage