CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP026383	Serratia sp. SSNIH1 chromosome, complete genome	0 crisprs	DEDDh,DinG,csa3,cas3,WYL,casR,PD-DExK	4
CP026384	Serratia sp. SSNIH1 plasmid pSER-840e, complete sequence	0 crisprs	NA	5
CP026385	Serratia sp. SSNIH1 plasmid pKPC-56ce, complete sequence	0 crisprs	DEDDh	5

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2151968 : 2159326

Enterobacteria_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY14226.1\|2151968_2153393_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.9e-53	30.5
AUY14227.1\|2153407_2154775_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	4.0e-34	28.8
AUY14228.1\|2155144_2156158_+	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	3.8e-82	47.9
AUY14229.1\|2156395_2157503_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-47	42.5
AUY14230.1\|2157910_2158444_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.4e-53	54.2
AUY14231.1\|2158444_2159326_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	6.4e-41	35.8

DBSCAN-SWA_2

2673463 : 2696532

Moraxella_phage(50.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY14691.1\|2673463_2674396_-\|coat	spore coat protein	NA	NA	NA	NA
AUY17036.1\|2674415_2676758_-	hypothetical protein	NA	NA	NA	NA
AUY14692.1\|2676909_2677677_-	molecular chaperone	NA	NA	NA	NA
AUY14693.1\|2677698_2678241_-\|coat	spore coat protein U	NA	NA	NA	NA
AUY14694.1\|2678234_2678738_-\|coat	spore coat protein U	NA	NA	NA	NA
AUY14695.1\|2678740_2679277_-\|coat	spore coat protein	NA	NA	NA	NA
AUY14696.1\|2679550_2680087_-\|coat	spore coat protein	NA	NA	NA	NA
AUY14697.1\|2680359_2681796_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
AUY17038.1\|2681898_2684529_-	MCE family protein	NA	NA	NA	NA
AUY17037.1\|2684497_2685745_-	paraquat-inducible protein A	NA	NA	NA	NA
AUY14698.1\|2686000_2686498_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
AUY14699.1\|2686594_2687305_+	RNA chaperone ProQ	NA	NA	NA	NA
AUY14700.1\|2687324_2689373_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	2.6e-85	33.9
AUY14701.1\|2689440_2690286_-	EamA/RhaT family transporter	NA	NA	NA	NA
AUY14702.1\|2690282_2691590_-	DUF2338 domain-containing protein	NA	NA	NA	NA
AUY14703.1\|2691582_2692380_-	nicotianamine synthase	NA	NA	NA	NA
AUY14704.1\|2692367_2693153_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.2e-09	27.9
AUY14705.1\|2693149_2694190_-	iron ABC transporter permease	NA	NA	NA	NA
AUY14706.1\|2694192_2695284_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AUY14707.1\|2695653_2696532_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_3

4062715 : 4083137

Enterobacteria_phage(27.78%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY15878.1\|4062715_4062958_+	DinI family protein	K7PKR6	Enterobacteria_phage	5.8e-29	82.3
AUY15879.1\|4064608_4065415_-	hypothetical protein	I7H419	Xanthomonas_virus	1.2e-09	35.0
AUY15880.1\|4065796_4069348_-	host specificity protein	F1C571	Cronobacter_phage	0.0e+00	65.0
AUY15881.1\|4069402_4070029_-\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.7e-48	50.5
AUY15882.1\|4070071_4070422_-	hypothetical protein	NA	NA	NA	NA
AUY15883.1\|4070459_4071164_-	peptidase P60	K7PGR2	Enterobacteria_phage	3.8e-105	74.0
AUY17109.1\|4071173_4071923_-\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	3.8e-95	64.5
AUY15884.1\|4071936_4072275_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.1e-33	60.0
AUY15885.1\|4072274_4074566_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	2.2e-16	43.1
AUY15886.1\|4074558_4074780_-	hypothetical protein	Q6UAW9	Klebsiella_phage	7.7e-12	49.3
AUY15887.1\|4074797_4075163_-\|tail	phage tail protein	Q7Y401	Yersinia_phage	5.0e-24	45.0
AUY15888.1\|4075286_4075742_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	1.2e-56	74.8
AUY15889.1\|4075783_4076176_-	hypothetical protein	Q7Y404	Yersinia_phage	7.2e-21	47.6
AUY15890.1\|4076172_4076562_-	hypothetical protein	Q7Y405	Yersinia_phage	2.2e-25	42.9
AUY15891.1\|4076619_4077060_-	lysozyme	A0A0M5M782	Salmonella_phage	8.9e-44	62.3
AUY15892.1\|4077046_4077367_-\|holin	holin	F1C5D1	Cronobacter_phage	2.5e-40	81.0
AUY17110.1\|4078160_4078523_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	1.6e-38	64.6
AUY15893.1\|4078732_4079410_+	S26 family signal peptidase	K7PK07	Enterobacteria_phage	6.0e-07	45.7
AUY15894.1\|4079836_4080166_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AUY15895.1\|4080293_4080761_-	DUF1348 domain-containing protein	NA	NA	NA	NA
AUY15896.1\|4080868_4081447_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
AUY15897.1\|4081440_4081857_-	glyoxalase	NA	NA	NA	NA
AUY15898.1\|4082006_4083137_-	porin OmpC	Q1MVN1	Enterobacteria_phage	5.7e-103	53.3

DBSCAN-SWA_4

5202865 : 5226963

Burkholderia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY16868.1\|5202865_5204071_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.4e-102	51.1
AUY16869.1\|5204215_5204557_-	hypothetical protein	NA	NA	NA	NA
AUY16870.1\|5204804_5205710_+	lipid A hydroxylase LpxO	S4VR59	Pandoravirus	8.8e-38	38.4
AUY16871.1\|5206007_5206928_+	lipid A biosynthesis palmitoleoyl acyltransferase	A0A1W6JP29	Morganella_phage	6.4e-76	52.3
AUY17175.1\|5207047_5207743_+	hypothetical protein	A0A0R6PHX8	Moraxella_phage	5.8e-21	27.1
AUY16872.1\|5207753_5208959_-\|transposase	ISL3 family transposase	A9YX10	Burkholderia_phage	1.2e-101	50.9
AUY16873.1\|5209110_5226963_-	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	2.4e-163	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 3097

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17179.1\|512_1193_-	hypothetical protein	NA	NA	NA	NA
AUY17180.1\|2545_3097_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	6.7e-73	78.5

DBSCAN-SWA_2

8101 : 8659

Shigella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17183.1\|8101_8659_-	recombinase family protein	A0A0C4UR34	Shigella_phage	3.3e-59	63.2

DBSCAN-SWA_3

16676 : 17268

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17192.1\|16676_16958_-	XRE family transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
AUY17193.1\|16938_17268_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2

DBSCAN-SWA_4

31722 : 32028

Klebsiella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17210.1\|31722_32028_+	dpoa decarboxylase	A0A248SL90	Klebsiella_phage	5.4e-08	39.4

DBSCAN-SWA_5

35344 : 35818

Moraxella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17214.1\|35344_35818_+	nuclease	A0A0R6PHV6	Moraxella_phage	1.1e-18	38.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP026385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11829

Klebsiella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17219.1\|532_853_-	chromosome segregation protein ParM	NA	NA	NA	NA
AUY17303.1\|997_1237_-	hypothetical protein	NA	NA	NA	NA
AUY17220.1\|1703_1913_-	hypothetical protein	NA	NA	NA	NA
AUY17221.1\|1915_2134_-	hypothetical protein	NA	NA	NA	NA
AUY17222.1\|2178_2862_-	hypothetical protein	NA	NA	NA	NA
AUY17223.1\|2878_4153_-	RelB antitoxin	NA	NA	NA	NA
AUY17224.1\|4679_5036_+	hypothetical protein	NA	NA	NA	NA
AUY17225.1\|5013_5592_+	hypothetical protein	NA	NA	NA	NA
AUY17226.1\|5593_6001_+	hypothetical protein	NA	NA	NA	NA
AUY17227.1\|6153_6699_-	hypothetical protein	NA	NA	NA	NA
AUY17228.1\|6834_7296_+	hypothetical protein	NA	NA	NA	NA
AUY17229.1\|7292_7541_+	XRE family transcriptional regulator	A0A248SLB9	Klebsiella_phage	1.2e-10	56.9
AUY17230.1\|7533_8121_+	restriction endonuclease	NA	NA	NA	NA
AUY17231.1\|8117_8603_+	hypothetical protein	NA	NA	NA	NA
AUY17232.1\|8599_8848_+	hypothetical protein	NA	NA	NA	NA
AUY17233.1\|8866_9607_+	resolvase	I3WFA4	Macacine_betaherpesvirus	9.5e-22	51.6
AUY17234.1\|9847_10822_+	recombinase	A0A0A7NPX4	Enterobacteria_phage	6.1e-85	52.0
AUY17235.1\|10824_11268_+	plasmid stability family protein	NA	NA	NA	NA
AUY17236.1\|11277_11829_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.7e-20	32.0

DBSCAN-SWA_2

15074 : 18078

Salmonella_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17243.1\|15074_16358_+	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.5e-62	41.2
AUY17244.1\|16965_17145_+	cobalamin biosynthesis protein CbiX	NA	NA	NA	NA
AUY17245.1\|17217_18078_+	DUF4942 domain-containing protein	I6RTT5	Marinomonas_phage	5.6e-18	30.4

DBSCAN-SWA_3

21747 : 22182

Pseudomonas_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17253.1\|21747_22182_+	single-stranded DNA-binding protein	A0A0U4K5C0	Pseudomonas_phage	7.5e-27	48.8

DBSCAN-SWA_4

52558 : 73922

Escherichia_phage(36.36%)

transposase,integrase

attL 72645:72704|attR 73954:74095

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17278.1\|52558_55456_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	4.2e-182	37.8
AUY17279.1\|55550_56156_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
AUY17280.1\|56469_57789_+\|transposase	IS1182 family transposase ISKpn6	Q9MBP7	Staphylococcus_prophage	1.9e-12	24.2
AUY17281.1\|58038_58920_-	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
AUY17282.1\|59444_60149_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUY17283.1\|60139_60322_+	hypothetical protein	NA	NA	NA	NA
AUY17284.1\|60285_61146_+	class A extended-spectrum beta-lactamase SHV-12	A0A077SL40	Escherichia_phage	2.2e-155	99.3
AUY17285.1\|61166_61928_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AUY17286.1\|63713_64976_+\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
AUY17287.1\|65139_65457_+	hypothetical protein	NA	NA	NA	NA
AUY17288.1\|65465_66110_-	quinolone resistance pentapeptide repeat protein QnrB19	NA	NA	NA	NA
AUY17289.1\|66787_67492_+\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
AUY17290.1\|67849_68407_+	recombinase	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
AUY17308.1\|68640_69195_+	aminoglycoside N-acetyltransferase AAC(6')-Ib'	NA	NA	NA	NA
AUY17291.1\|69264_70053_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
AUY17309.1\|70112_70937_+	oxacillin-hydrolyzing class D beta-lactamase OXA-9	NA	NA	NA	NA
AUY17292.1\|71636_72497_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
72645:72704	attL	NA	NA	NA	NA
AUY17310.1\|72892_73426_-	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
AUY17293.1\|73574_73922_+\|integrase	class 1 integron integrase IntI1	NA	NA	NA	NA
73954:74095	attR	NA	NA	NA	NA

DBSCAN-SWA_5

80831 : 82519

Morganella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUY17300.1\|80831_81266_+	peptidase	A0A1W6JNS2	Morganella_phage	2.1e-29	55.3
AUY17301.1\|81214_82519_+	translesion error-prone DNA polymerase V subunit UmuC	A0A1W6JNT0	Morganella_phage	1.3e-111	50.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026383

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026384

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP026385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection