CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027027	Shigella dysenteriae strain E670/74 chromosome, complete genome	7 crisprs	NA	0	4	0	0
CP027028	Shigella dysenteriae strain E670/74 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. CP027027

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CRISPR-Cas detection and classification

Crispr_ID: CP027027_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_1

1505206-1505352

Orphan

Consensus_repeat	Method
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_1

>merge|CP027027|1|1505206-1505352|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTGTTGTGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>CP027027|1|1|1505206-1505352|CRISPRCasFinder
GTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTGTTGT
GTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

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Crispr_ID: CP027027_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_2

1660069-1660184

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_2

>merge|CP027027|2|1660069-1660184|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>CP027027|2|2|1660069-1660184|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

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Crispr_ID: CP027027_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_3

3251573-3251696

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_3

>merge|CP027027|3|3251573-3251696|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP027027|3|3|3251573-3251696|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

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Crispr_ID: CP027027_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_4

3884625-3884758

Orphan

Consensus_repeat	Method
TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_4

>merge|CP027027|4|3884625-3884758|CRISPRCasFinder
TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACA

>CP027027|4|4|3884625-3884758|CRISPRCasFinder
TGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACA	AGACCCGAGCACAGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTCAG
TGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACA

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Crispr_ID: CP027027_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_5

4204527-4204653

Orphan

Consensus_repeat	Method
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_5

>merge|CP027027|5|4204527-4204653|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

>CP027027|5|5|4204527-4204653|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	TCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGA
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

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Crispr_ID: CP027027_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_6

4913135-4913223

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027027_6

>merge|CP027027|6|4913135-4913223|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGTATGACGCAATAAATGCAACTCCGACAACCGTGTTCCCCGCGCCAGCGGGGATAAACC

>CP027027|6|6|4913135-4913223|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGTATGACGCAATAAATGCAACTCCGACAACC
GTGTTCCCCGCGCCAGCGGGGATAAACC

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Crispr_ID: CP027027_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027027_7

4940085-4940357

Orphan

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP027027_7

>merge|CP027027|7|4940085-4940357|PILER-CR,CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCGCATCCGGCGTGAATCGAACGTTACGTGTCGTCGTGTTCCCCACGCCAGCGGGGATAAACCGTTATTAACGGAAAAATACTGGCTTGTCGTTATGTGTTCCCCGCGTCAGCGGGGATAAACCGGTCCAACGACATGAGGCGGTGGAACGATACGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCAACAATTATTTTCGTCGCATCGTCATAGTGTTCCCCGCATCAGCGGGGATAAACCG

>CP027027|7|1|4940085-4940296|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCGGCGTGAATCGAACGTTACGTGTCGTC
GTGTTCCCCACGCCAGCGGGGATAAACCG	TTATTAACGGAAAAATACTGGCTTGTCGTTAT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTCCAACGACATGAGGCGGTGGAACGATACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>CP027027|7|7|4940085-4940357|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATCCGGCGTGAATCGAACGTTACGTGTCGTC
GTGTTCCCCACGCCAGCGGGGATAAACCG	TTATTAACGGAAAAATACTGGCTTGTCGTTAT
GTGTTCCCCGCGTCAGCGGGGATAAACCG	GTCCAACGACATGAGGCGGTGGAACGATACGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCAACAATTATTTTCGTCGCATCGTCATA
GTGTTCCCCGCATCAGCGGGGATAAACCG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027027_2	2.1\|1660100\|54\|CP027027\|CRISPRCasFinder	1660100-1660153	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
CP027027_3	3.1\|3251616\|38\|CP027027\|CRISPRCasFinder	3251616-3251653	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP027027_4	4.1\|3884663\|58\|CP027027\|CRISPRCasFinder	3884663-3884720	58	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	104-161	5	0.914
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229131	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229232	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229285-229333	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239625	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239726	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239779-239827	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230537	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230638	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230691-230739	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211507	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211608	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211661-211709	9	0.816
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229434	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239928	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230840	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211810	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7490	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84314	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386556	10	0.796
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14244	10	0.796
CP027027_4	4.1\|3884663\|58\|CP027027\|CRISPRCasFinder	3884663-3884720	58	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7432-7489	11	0.81
CP027027_4	4.1\|3884663\|58\|CP027027\|CRISPRCasFinder	3884663-3884720	58	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84256-84313	11	0.81
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194051	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194096-194144	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194282-194330	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204545	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204590-204638	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204776-204824	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195379	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195424-195472	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195610-195658	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176334	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176379-176427	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176565-176613	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27282-27330	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27381-27429	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51882	11	0.776
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19437	11	0.776
CP027027_2	2.1\|1660100\|54\|CP027027\|CRISPRCasFinder	1660100-1660153	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211778	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211978	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194189-194237	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222272	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222472	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204683-204731	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213106	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213306	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195517-195565	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194061	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194261	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176472-176520	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11559	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397136	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404181	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28042	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31347	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33059-33107	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141016-141064	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MF374379	Escherichia phage DN1, complete genome	31158-31206	12	0.755
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14153	13	0.735
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6907	13	0.735
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NC_049343	Escherichia phage 500465-2, complete genome	31797-31845	13	0.735
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-142	13	0.735
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82890	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313640	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63937	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110186-110234	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	198909-198957	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40353	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	91418-91466	14	0.714
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102592	15	0.694
CP027027_5	5.1\|4204566\|49\|CP027027\|CRISPRCasFinder	4204566-4204614	49	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56079	15	0.694

1. spacer 2.1|1660100|54|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 3.1|3251616|38|CP027027|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 4.1|3884663|58|CP027027|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 5, identity: 0.914

agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattcag	CRISPR spacer
agacccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatcgt	Protospacer
*********************** ****************************. **.

4. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

5. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

6. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

7. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

8. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

9. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

10. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

11. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

12. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

13. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

14. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

15. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

16. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

17. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

18. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

19. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

20. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

21. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

22. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga--	CRISPR spacer
cacaagtgccggatgcggcgtaaacgccttatccggcctacg--ccagact	Protospacer
. *..***********.****.********************  .*.**

23. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gctggttgccggatgcggcgtgaacgccttatccggcctacattcggca	Protospacer
 *.** **********.************************. .. * *

24. spacer 4.1|3884663|58|CP027027|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.81

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

25. spacer 4.1|3884663|58|CP027027|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.81

---agacccgagcacagaaccgtaggccggataaggcgttcacgccgcatccggcattca	CRISPR spacer
acaaaact---gcactcaaccgtaggccggataaggcgttcacgccgcatccggcaattg	Protospacer
   *.**.   ****  *************************************** *..

26. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

27. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

28. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

29. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

30. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

31. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

32. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

33. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

34. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

35. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

36. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

37. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

38. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagc	Protospacer
. *.. .*********.************************** * .*

39. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagt	Protospacer
. *.. .*********.************************** * .*

40. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agctggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgc	Protospacer
  * ************.****.*******************.. *  *

41. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggtgtgaacgccttatccggcctacggatggcc	Protospacer
* .  .**********.*.************************ * *

42. spacer 2.1|1660100|54|CP027027|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

43. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

44. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

45. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

46. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

47. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

48. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

49. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

50. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

51. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

52. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

53. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

54. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

55. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
aatttttgccggatgcggcgtgaacgccttatccggcctacaacgggca	Protospacer
  .   **********.************************..*  * *

56. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga---	CRISPR spacer
cacaattgccggatgcggcgtaaacgccttatccggcctaca---tggataa	Protospacer
. *.. **********.****.*******************.   .***

57. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttttcttgccggatgcggcgtaaacgccttatccggcctacaggacgtg	Protospacer
*..   **********.****.*******************.*  ** .

58. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ctcaaatgccggatgcggcgtgaacgccttatccggcctacgcacacta	Protospacer
..*...**********.*************************  .   *

59. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agcaaatgccggatgcggcgtaaacgccttatccggcctacatttggca	Protospacer
  *...**********.****.*******************. .* * *

60. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

61. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

62. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
* .  .**********.************************.. .** .

63. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gttgattgccggatgcggcgtaaacgccttatccggcctacattcggca	Protospacer
 ..*. **********.****.*******************. .. * *

64. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttgttttgccggatgcggcgtgaacgccttatccggcctacaaaaccat	Protospacer
*.    **********.************************..  * .

65. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtgtttgccggatgcggcgtgaacgccttatccgacctacgtgtgacg	Protospacer
  .*  **********.******************.******  * . .

66. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttatgttgccggatgcggcgtaaacgccttatccggcctacaaaagcaa	Protospacer
*.  * **********.****.*******************..    .*

67. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gtaaaatgccggatgcggcgtgaacgccttatccggcctacaaaccaag	Protospacer
 . ...**********.************************.. .*...

68. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acaaaatgccggatgcggcgtaaacgccttatccggcctacaaaatcgt	Protospacer
 * ...**********.****.*******************..  . *

69. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

70. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

71. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

72. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtaaacgccttatccggcctacaaaaagcg	Protospacer
* .  .**********.****.*******************..   * .

73. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

74. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtcaatgccggatgcggcgtgaacgccttatccggcctacaaaagcat	Protospacer
  . ..**********.************************..    .

75. spacer 5.1|4204566|49|CP027027|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtaaacgccttatccggcctacaaaaaacg	Protospacer
. * . **********.****.*******************..   . .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage