CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP024311	Rhizobium sp. NXC24 chromosome, complete genome	0 crisprs	WYL,csa3,cas3	7
CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	0 crisprs	csa3,RT	3
CP024313	Rhizobium sp. NXC24 plasmid pRspNXC24b, complete sequence	0 crisprs	DEDDh	3
CP024312	Rhizobium sp. NXC24 plasmid pRspNXC24a, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1514287 : 1557089

Pseudomonas_phage(20.0%)

head,tail,tRNA,terminase,portal,integrase

attL 1539006:1539055|attR 1557105:1557154

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA21159.1\|1514287_1514575_+\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C	NA	NA	NA	NA
AVA21160.1\|1514631_1516113_+\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A	NA	NA	NA	NA
AVA21161.1\|1516187_1516445_-	hypothetical protein	NA	NA	NA	NA
AVA21162.1\|1516744_1517254_+	GCN5-related N-acetyltransferase protein	NA	NA	NA	NA
AVA21163.1\|1517331_1518837_+\|tRNA	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B	NA	NA	NA	NA
AVA21164.1\|1518843_1519344_+	GCN5-related N-acetyltransferase protein	NA	NA	NA	NA
AVA21165.1\|1520049_1520517_+	GCN5-related N-acetyltransferase protein	NA	NA	NA	NA
AVA21166.1\|1520622_1521021_+	NADH dehydrogenase (ubiquinone) protein	NA	NA	NA	NA
AVA21167.1\|1521125_1521566_+	hypothetical protein	NA	NA	NA	NA
AVA21168.1\|1521647_1522316_-	hypothetical protein	NA	NA	NA	NA
AVA21169.1\|1522320_1522488_+	hypothetical protein	NA	NA	NA	NA
AVA21170.1\|1522651_1523608_-	hypothetical protein	NA	NA	NA	NA
AVA21171.1\|1523678_1524302_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AVA21172.1\|1524305_1525652_-	acetyl-CoA carboxylase biotin carboxylase subunit AccC 1	NA	NA	NA	NA
AVA21173.1\|1525663_1526134_-	acetyl-CoA carboxylase biotin carboxyl carrier subunit AccB 1	NA	NA	NA	NA
AVA21174.1\|1526157_1526595_-	3-dehydroquinate dehydratase 1	NA	NA	NA	NA
AVA21175.1\|1526821_1527589_-	DSBA-like thioredoxin protein	NA	NA	NA	NA
AVA21176.1\|1527800_1528958_+	aspartate aminotransferase protein	NA	NA	NA	NA
AVA21177.1\|1529170_1532047_-	ribonuclease E/G protein	NA	NA	NA	NA
AVA21178.1\|1532026_1532242_+	hypothetical protein	NA	NA	NA	NA
AVA21179.1\|1532788_1533967_+	N-acetylmuramoyl-l-alanine amidase protein	NA	NA	NA	NA
AVA21180.1\|1534227_1536693_+	penicillin-binding protein 1A	NA	NA	NA	NA
AVA21181.1\|1536922_1537951_+	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	1.7e-05	40.0
AVA21182.1\|1538039_1538813_-	NAD(+) kinase	NA	NA	NA	NA
1539006:1539055	attL	NA	NA	NA	NA
AVA21183.1\|1539969_1540416_+	hypothetical protein	NA	NA	NA	NA
AVA21184.1\|1540933_1542838_+	acyltransferase 3 family protein	B5WZU0	Pseudomonas_phage	1.5e-50	37.0
AVA21185.1\|1542823_1545007_-	hypothetical protein	A0A076G7H5	Sinorhizobium_phage	6.8e-60	62.1
AVA21186.1\|1545294_1546917_-\|terminase	phage terminase large subunit protein	Q6DMU3	Streptococcus_phage	2.6e-80	34.9
AVA21187.1\|1546885_1547287_-\|terminase	phage terminase small subunit protein	NA	NA	NA	NA
AVA21188.1\|1547286_1547580_-\|head,tail	phage head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	1.7e-06	33.3
AVA21189.1\|1547902_1548262_-	hypothetical protein	Q38456	Bacillus_phage	2.1e-14	48.9
AVA21190.1\|1548413_1548794_-	hypothetical protein	NA	NA	NA	NA
AVA21191.1\|1548862_1550410_-\|head	HK97 family prohead peptidase protein	A0A0K1LLG2	Bacillus_phage	9.5e-32	31.4
AVA21192.1\|1550406_1551621_-\|portal	phage portal protein	M1PLL1	Streptococcus_phage	1.1e-40	31.7
AVA21193.1\|1551601_1552213_-	hypothetical protein	NA	NA	NA	NA
AVA21194.1\|1552289_1553168_-	hypothetical protein	NA	NA	NA	NA
AVA21195.1\|1553335_1554985_-	AAA ATPase domain-containing protein	A0A1B2LRQ1	Wolbachia_phage	1.6e-37	41.5
AVA21196.1\|1554965_1555235_-	hypothetical protein	NA	NA	NA	NA
AVA21197.1\|1555255_1555465_-	hypothetical protein	NA	NA	NA	NA
AVA21198.1\|1555461_1555677_-	hypothetical protein	NA	NA	NA	NA
AVA21199.1\|1555850_1557089_+\|integrase	integrase family protein	Q9ZWV7	Corynephage	1.1e-11	22.6
1557105:1557154	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1614158 : 1685562

uncultured_Mediterranean_phage(22.22%)

holin,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA21267.1\|1614158_1615562_+\|protease	serine protease Do 2	A0A1B1IRH0	uncultured_Mediterranean_phage	6.8e-13	33.3
AVA21268.1\|1615558_1616875_+	recombination factor protein RarA	G3MBE0	Bacillus_virus	1.2e-75	38.2
AVA21269.1\|1616883_1617216_-	hypothetical protein	NA	NA	NA	NA
AVA21270.1\|1617326_1617629_-	hypothetical protein	NA	NA	NA	NA
AVA21271.1\|1617625_1617880_-	hypothetical protein	NA	NA	NA	NA
AVA21272.1\|1617964_1618906_-	dihydrodipicolinate synthase 2	NA	NA	NA	NA
AVA21273.1\|1618918_1619293_-	hypothetical protein	NA	NA	NA	NA
AVA21274.1\|1619319_1620336_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AVA21275.1\|1620649_1622098_+	hypothetical protein	NA	NA	NA	NA
AVA21276.1\|1622075_1622894_+	hypothetical protein	NA	NA	NA	NA
AVA21277.1\|1622893_1623919_+	hypothetical protein	NA	NA	NA	NA
AVA21278.1\|1623918_1624926_+	OmpA/MotB family outer membrane protein	NA	NA	NA	NA
AVA21279.1\|1624950_1626573_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	6.2e-58	29.9
AVA21280.1\|1626804_1627932_+	hypothetical protein	NA	NA	NA	NA
AVA21281.1\|1628199_1629999_-	TniQ family protein	NA	NA	NA	NA
AVA21282.1\|1630007_1631075_-	AAA ATPase domain-containing protein	NA	NA	NA	NA
AVA21283.1\|1631090_1633322_-	hypothetical protein	NA	NA	NA	NA
AVA21284.1\|1633333_1634176_-	hypothetical protein	NA	NA	NA	NA
AVA21285.1\|1634305_1634563_-	hypothetical protein	NA	NA	NA	NA
AVA21286.1\|1635326_1637633_-	methyltransferase domain-containing protein	NA	NA	NA	NA
AVA21287.1\|1637738_1638785_-	hypothetical protein	NA	NA	NA	NA
AVA21288.1\|1639467_1639896_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA21289.1\|1639892_1640243_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZDM8	Stx2-converting_phage	1.8e-31	56.7
AVA21290.1\|1640290_1641934_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZEB3	Stx2-converting_phage	1.5e-99	41.9
AVA21291.1\|1641902_1642148_-	hypothetical protein	NA	NA	NA	NA
AVA21292.1\|1642189_1642354_-	hypothetical protein	NA	NA	NA	NA
AVA21293.1\|1643342_1643975_+	cell wall glycoside hydrolase family 25 protein	NA	NA	NA	NA
AVA21294.1\|1644194_1645706_+	hypothetical protein	NA	NA	NA	NA
AVA21295.1\|1645756_1646200_-	hypothetical protein	NA	NA	NA	NA
AVA21296.1\|1646320_1647460_-	hypothetical protein	NA	NA	NA	NA
AVA21297.1\|1647460_1647919_-	hypothetical protein	NA	NA	NA	NA
AVA21298.1\|1648058_1648493_-	HAD-like domain-containing protein	A0A2I6PFA6	Proteus_phage	1.8e-17	34.0
AVA21299.1\|1648498_1648690_-	hypothetical protein	NA	NA	NA	NA
AVA21300.1\|1648777_1650145_+	AAA domain-containing protein	NA	NA	NA	NA
AVA21301.1\|1650147_1650624_+	very short patch repair endonuclease Vsr protein	E5E3X5	Burkholderia_phage	4.2e-31	49.2
AVA21302.1\|1650734_1651790_-	hypothetical protein	NA	NA	NA	NA
AVA21303.1\|1652514_1653567_-	hypothetical protein	NA	NA	NA	NA
AVA21304.1\|1653563_1655843_-	AAA domain-containing protein	NA	NA	NA	NA
AVA21305.1\|1656205_1660954_-	helicase/restriction endonuclease domain-containing protein	NA	NA	NA	NA
AVA21306.1\|1661095_1662370_-	hypothetical protein	NA	NA	NA	NA
AVA21307.1\|1663031_1664240_+	peptidase PDZ domain-containing protein	A0A1B1IRH0	uncultured_Mediterranean_phage	1.5e-13	31.2
AVA21308.1\|1664425_1664749_+	hypothetical protein	NA	NA	NA	NA
AVA21309.1\|1664784_1665306_+	hypothetical protein	NA	NA	NA	NA
AVA21310.1\|1665562_1666261_+	hypothetical protein	NA	NA	NA	NA
AVA21311.1\|1666323_1667346_+	hypothetical protein	NA	NA	NA	NA
AVA21312.1\|1667396_1668554_+	hypothetical protein	NA	NA	NA	NA
AVA21313.1\|1669029_1669749_-	GntR family transcriptional regulator protein	NA	NA	NA	NA
AVA21314.1\|1670027_1670789_+	class II aldolase/adducin domain-containing protein	NA	NA	NA	NA
AVA21315.1\|1670867_1671947_+	AraC family transcriptional regulator protein	NA	NA	NA	NA
AVA21316.1\|1671975_1672968_-\|holin	choline sulfate-utilization transcription factor protein	NA	NA	NA	NA
AVA21317.1\|1673208_1674018_-	short-chain dehydrogenase/reductase SDR family protein	Q06VL0	Trichoplusia_ni_ascovirus	2.6e-17	32.6
AVA21318.1\|1674029_1674812_-	short-chain dehydrogenase/reductase SDR family protein	NA	NA	NA	NA
AVA21319.1\|1674850_1677298_-	glycine-cleavage system T/FAD dependent oxidoreductase domain-containing protein	NA	NA	NA	NA
AVA21320.1\|1677311_1678325_-	Zn-dependent alcohol dehydrogenase GroES-like protein	NA	NA	NA	NA
AVA21321.1\|1678338_1679844_-	aldehyde dehydrogenase protein	NA	NA	NA	NA
AVA21322.1\|1679906_1680791_-	dihydrodipicolinate synthetase-like protein	NA	NA	NA	NA
AVA21323.1\|1680820_1682194_-	FAD dependent oxidoreductase protein	NA	NA	NA	NA
AVA21324.1\|1682760_1683603_-	proline/glycine betaine ABC transporter permease protein	NA	NA	NA	NA
AVA21325.1\|1683602_1684448_-	proline/glycine betaine ABC transporter permease protein	NA	NA	NA	NA
AVA21326.1\|1684470_1685562_-\|holin	proline/glycine betaine/choline ABC transporter ATP-binding protein	NA	NA	NA	NA

DBSCAN-SWA_3

1773833 : 1783389

uncultured_Mediterranean_phage(88.89%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA21398.1\|1773833_1774847_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	1.6e-24	42.6
AVA21399.1\|1775018_1775816_+	chromosome segregation and condensation ScpA-like protein	A0A1B1IVW1	uncultured_Mediterranean_phage	3.4e-33	36.4
AVA21400.1\|1775856_1776555_+	chromosome segregation/condensation ScpB-like protein	A0A1B1IVT7	uncultured_Mediterranean_phage	8.0e-39	44.7
AVA21401.1\|1776790_1776994_+	Sec-independent protein translocase protein TatA	A0A1B1IVR9	uncultured_Mediterranean_phage	9.5e-09	64.7
AVA21402.1\|1777049_1777739_+	Sec-independent protein translocase protein TatB	NA	NA	NA	NA
AVA21403.1\|1777735_1778563_+	Sec-independent protein translocase protein TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	3.0e-48	44.9
AVA21404.1\|1778663_1779947_+\|tRNA	seryl-tRNA synthetase	A0A1B1IVT2	uncultured_Mediterranean_phage	3.8e-95	46.0
AVA21405.1\|1780019_1780793_+	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.4e-23	29.8
AVA21406.1\|1780789_1781443_+	protein-L-isoaspartate O-methyltransferase 2	A0A1B1IU40	uncultured_Mediterranean_phage	3.4e-15	35.4
AVA21407.1\|1781613_1783389_+	peptidase M23 family protein	I3PV24	Clostridium_phage	2.3e-13	33.3

DBSCAN-SWA_4

1936902 : 1947412

uncultured_Mediterranean_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA21549.1\|1936902_1939824_-	excinuclease ABC subunit A	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	62.0
AVA21550.1\|1940126_1940687_+	single-stranded DNA-binding protein Ssb	R9TP78	Rhizobium_phage	1.2e-45	73.7
AVA21551.1\|1940762_1941395_-	multiple antibiotic resistance MarC-related protein	NA	NA	NA	NA
AVA21552.1\|1941620_1944425_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	7.3e-99	33.6
AVA21553.1\|1945093_1945282_-	hypothetical protein	NA	NA	NA	NA
AVA21554.1\|1945346_1945745_-	hypothetical protein	NA	NA	NA	NA
AVA21555.1\|1945763_1946267_+	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	4.8e-25	37.2
AVA21556.1\|1946302_1946875_+	cyclophilin-type peptidylprolyl cis-trans isomerase 1	A0A1B1IVS0	uncultured_Mediterranean_phage	8.6e-47	56.4
AVA21557.1\|1946902_1947412_+	cyclophilin-type peptidylprolyl cis-trans isomerase 2	A0A1B1IVS0	uncultured_Mediterranean_phage	1.0e-46	61.0

DBSCAN-SWA_5

2592605 : 2605350

Paracoccus_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA22174.1\|2592605_2593238_-	glycoside hydrolase family 19 protein	A0A0F6WBX9	Sinorhizobium_phage	4.8e-67	60.8
AVA22175.1\|2593394_2593610_-	hypothetical protein	NA	NA	NA	NA
AVA22176.1\|2593622_2594276_-	hypothetical protein	NA	NA	NA	NA
AVA22177.1\|2594294_2594702_-	hypothetical protein	NA	NA	NA	NA
AVA22178.1\|2594703_2595135_-	hypothetical protein	NA	NA	NA	NA
AVA22179.1\|2595139_2601163_-\|tail	phage tail protein	G8DH58	Emiliania_huxleyi_virus	1.2e-111	37.1
AVA22180.1\|2601269_2601695_-	hypothetical protein	A0A0U2C0Z1	Paracoccus_phage	8.7e-20	44.9
AVA22181.1\|2601691_2602315_-	hypothetical protein	A0A0U2C133	Paracoccus_phage	4.4e-20	34.6
AVA22182.1\|2602318_2602963_-	hypothetical protein	A0A0U2BXF8	Paracoccus_phage	3.3e-15	31.6
AVA22183.1\|2602962_2605350_-\|tail	phage-related minor tail protein	A0A291AUU3	Sinorhizobium_phage	4.1e-42	41.8

DBSCAN-SWA_6

2608920 : 2617043

Rhizobium_phage(28.57%)

capsid,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA22190.1\|2608920_2609406_-	hypothetical protein	W6EKF5	Rhizobium_phage	2.1e-30	45.8
AVA22191.1\|2609409_2609841_-	bacteriophage-related domain-containing protein	NA	NA	NA	NA
AVA22192.1\|2609879_2610290_-	hypothetical protein	NA	NA	NA	NA
AVA22193.1\|2610329_2610542_-	hypothetical protein	NA	NA	NA	NA
AVA22194.1\|2610538_2610895_-	hypothetical protein	NA	NA	NA	NA
AVA22195.1\|2610894_2611392_-	hypothetical protein	A0A076G6I4	Sinorhizobium_phage	3.6e-17	40.9
AVA22196.1\|2611463_2612432_-\|capsid	phage capsid family protein	A0A2H4J526	uncultured_Caudovirales_phage	3.2e-134	72.0
AVA22197.1\|2612435_2612906_-	hypothetical protein	A0A2H4J1G1	uncultured_Caudovirales_phage	1.6e-38	58.6
AVA22198.1\|2612933_2614049_-	hypothetical protein	A0A2R3UA67	Siphoviridae_environmental_samples	2.7e-73	44.0
AVA22199.1\|2614143_2615511_-	phage-associated protein	L7TRA1	Rhizobium_phage	1.2e-115	49.4
AVA22200.1\|2615561_2617043_-\|terminase	phage terminase large subunit protein	H9C0U8	Aeromonas_phage	6.4e-94	43.3

DBSCAN-SWA_7

2882287 : 2891969

Myxococcus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA22464.1\|2882287_2884651_-	hypothetical protein	Q94MR3	Myxococcus_phage	2.0e-12	32.6
AVA22465.1\|2884667_2885681_-	hypothetical protein	X2CY28	Brucella_phage	1.2e-27	39.8
AVA22466.1\|2885664_2886063_-	N-acetyltransferase family protein	NA	NA	NA	NA
AVA22467.1\|2886059_2887622_-	hypothetical protein	A0A088F6U1	Sulfitobacter_phage	2.7e-58	31.3
AVA22468.1\|2887629_2887932_-	hypothetical protein	NA	NA	NA	NA
AVA22469.1\|2887949_2888594_-	hypothetical protein	A0A0A8J9W2	Klebsiella_phage	4.2e-10	49.5
AVA22470.1\|2888590_2889358_-	hypothetical protein	A0A088FAT4	Sulfitobacter_phage	1.1e-07	24.9
AVA22471.1\|2889373_2889964_-	hypothetical protein	Q94MR9	Myxococcus_phage	9.5e-17	29.6
AVA22472.1\|2890021_2890180_-	hypothetical protein	NA	NA	NA	NA
AVA22473.1\|2890181_2890970_-	hypothetical protein	NA	NA	NA	NA
AVA22474.1\|2890994_2891969_-	hypothetical protein	Q94MS1	Myxococcus_phage	1.0e-84	51.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP024314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

427313 : 471513

uncultured_virus(16.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA24824.1\|427313_428147_+\|transposase	IS5 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24825.1\|428412_428727_+	chaperonin GroES 3	A0A221S4G8	uncultured_virus	2.0e-21	54.3
AVA24826.1\|428767_430396_+	chaperonin GroEL 3	A0A219YK78	uncultured_virus	1.9e-179	63.5
AVA24827.1\|430491_430908_+	hypothetical protein	NA	NA	NA	NA
AVA24828.1\|430997_432092_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVA24829.1\|432468_432942_+	HSP20 family heat shock protein	E3SM62	Prochlorococcus_phage	8.7e-21	38.3
AVA24830.1\|433036_433546_+	HSP20 family heat shock protein	A0A1B2LRT2	Wolbachia_phage	3.1e-16	37.4
AVA24831.1\|433722_434034_+	hypothetical protein	NA	NA	NA	NA
AVA24832.1\|434893_435706_+	short-chain dehydrogenase domain-containing protein	NA	NA	NA	NA
AVA24833.1\|435692_436121_+	glutathione S-transferase domain-containing protein	NA	NA	NA	NA
AVA24834.1\|436188_437190_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
AVA24835.1\|437220_438195_+	LysR family transcriptional regulator protein	NA	NA	NA	NA
AVA24836.1\|438340_439663_-	D-serine dehydratase	NA	NA	NA	NA
AVA24837.1\|439709_440468_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.7e-31	36.4
AVA24838.1\|440493_441618_-	amino acid ABC transporter permease protein	NA	NA	NA	NA
AVA24839.1\|441614_442826_-	amino acid ABC transporter permease protein	NA	NA	NA	NA
AVA24840.1\|442886_443918_-	amino acid ABC transporter substrate-binding protein	A0A1B1IT51	uncultured_Mediterranean_phage	4.4e-49	35.4
AVA24841.1\|444219_445116_-	LysR family transcriptional regulator protein	NA	NA	NA	NA
AVA24842.1\|445240_446518_+	serine hydroxymethyltransferase 2	A0A240F3L3	Aeromonas_phage	1.0e-87	46.6
AVA24843.1\|446632_447529_+	bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/cyclohydrolase FolD 2	A0A249XZQ2	Enterococcus_phage	7.9e-23	34.3
AVA24844.1\|447550_448450_+	formyltetrahydrofolate deformylase 3	M4QRX9	Synechococcus_phage	3.5e-10	34.3
AVA24845.1\|448702_449227_-	hypothetical protein	NA	NA	NA	NA
AVA24846.1\|449448_449958_-	hypothetical protein	NA	NA	NA	NA
AVA24847.1\|450176_450644_-	activator of Hsp90 ATPase 1 family protein	NA	NA	NA	NA
AVA24848.1\|450636_450984_-	ArsR family transcriptional regulator protein	NA	NA	NA	NA
AVA24849.1\|451407_451953_-	N-acetyltransferase family protein	NA	NA	NA	NA
AVA24850.1\|451952_452261_-	ribbon-helix-helix domain-containing protein	NA	NA	NA	NA
AVA24851.1\|452360_452564_+	hypothetical protein	NA	NA	NA	NA
AVA24852.1\|452588_452843_+	hypothetical protein	NA	NA	NA	NA
AVA24853.1\|452839_453262_+	toxin/antitoxin system PilT domain-containing protein	NA	NA	NA	NA
AVA24854.1\|453774_454272_+	hypothetical protein	NA	NA	NA	NA
AVA24855.1\|454274_454772_+	hypothetical protein	NA	NA	NA	NA
AVA24856.1\|455079_455697_+	hypothetical protein	NA	NA	NA	NA
AVA24857.1\|455952_457467_-\|transposase	ISNCY family insertion sequence transposase protein	NA	NA	NA	NA
AVA24858.1\|457582_457810_+	hypothetical protein	NA	NA	NA	NA
AVA24859.1\|458110_458620_-	hypothetical protein	NA	NA	NA	NA
AVA24860.1\|458830_459334_-	activator of Hsp90 ATPase 1 family protein	NA	NA	NA	NA
AVA24861.1\|459424_460153_-	SMP-30/gluconolaconase/LRE domain-containing protein	NA	NA	NA	NA
AVA24862.1\|460593_460773_-	hypothetical protein	NA	NA	NA	NA
AVA24863.1\|460813_461065_-\|transposase	IS21 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA24864.1\|461965_462160_+	hypothetical protein	NA	NA	NA	NA
AVA24865.1\|462213_462435_+	hypothetical protein	NA	NA	NA	NA
AVA24866.1\|462443_462998_-	L,D-transpeptidase domain-containing protein	NA	NA	NA	NA
AVA24867.1\|463008_463389_+	hypothetical protein	NA	NA	NA	NA
AVA24868.1\|463409_464474_-	ATP-dependent DNA ligase protein	A0A068CDF3	Rhizobium_phage	1.4e-127	66.1
AVA24869.1\|464477_465296_-	ATP-dependent DNA helicase Ku-type protein	NA	NA	NA	NA
AVA24870.1\|465308_466208_-	ATP-dependent DNA helicase Ku-type protein	NA	NA	NA	NA
AVA24871.1\|466902_467544_-	thioredoxin-like protein	NA	NA	NA	NA
AVA24872.1\|467749_468022_+	hypothetical protein	NA	NA	NA	NA
AVA24873.1\|468668_469892_+	P-loop NTPase domain-containing protein	NA	NA	NA	NA
AVA24874.1\|470108_470477_-\|transposase	IS256 family insertion sequence transposase domain-containing protein	A0A220NQR7	Corynebacterium_phage	3.3e-15	38.9
AVA24875.1\|470788_471169_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24876.1\|471165_471513_+\|transposase	IS66 family insertion sequence transposase protein	S5VXZ8	Leptospira_phage	3.8e-13	34.7

DBSCAN-SWA_2

1338793 : 1409008

Stx2-converting_phage(22.22%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA25702.1\|1338793_1340470_+\|holin	glucose-methanol-choline oxidoreductase protein	NA	NA	NA	NA
AVA25703.1\|1341004_1341910_+	hypothetical protein	NA	NA	NA	NA
AVA25704.1\|1342216_1343413_-	hypothetical protein	NA	NA	NA	NA
AVA25705.1\|1343685_1344360_+	AraC family transcriptional regulator domain-containing protein	NA	NA	NA	NA
AVA25706.1\|1344514_1345234_+	GntR family transcriptional regulator protein	NA	NA	NA	NA
AVA25707.1\|1345243_1346023_+	pyrroline-5-carboxylate reductase protein	NA	NA	NA	NA
AVA25708.1\|1346023_1346572_-	XRE family transcriptional regulator protein	NA	NA	NA	NA
AVA25709.1\|1346719_1348054_+	beta alanine--pyruvate transaminase protein	NA	NA	NA	NA
AVA25710.1\|1348243_1350184_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	4.9e-09	56.2
AVA25711.1\|1350876_1351128_+	hypothetical protein	NA	NA	NA	NA
AVA25712.1\|1351124_1351523_+	toxin/antitoxin system PilT domain-containing protein	NA	NA	NA	NA
AVA25713.1\|1351807_1352008_-	hypothetical protein	NA	NA	NA	NA
AVA25714.1\|1352098_1352989_+	sulfate adenylyltransferase subunit 2	NA	NA	NA	NA
AVA25715.1\|1352988_1354896_+	bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase	A0A2K9L4R9	Tupanvirus	1.6e-25	39.6
AVA25716.1\|1355833_1356664_+\|transposase	IS66 family insertion sequence transposase domain-containing protein	A0A218MNE7	uncultured_virus	3.0e-24	32.1
AVA25717.1\|1356660_1357224_+	hypothetical protein	NA	NA	NA	NA
AVA25718.1\|1357267_1357450_+	hypothetical protein	NA	NA	NA	NA
AVA25719.1\|1357461_1357758_-	hypothetical protein	NA	NA	NA	NA
AVA25720.1\|1357757_1359383_-\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZEB3	Stx2-converting_phage	2.5e-99	39.6
AVA25721.1\|1359446_1359794_-\|transposase	IS66 family insertion sequence transposase protein	S5VXZ8	Leptospira_phage	3.8e-13	34.7
AVA25722.1\|1359790_1360174_-\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA25723.1\|1360352_1360598_+	hypothetical protein	NA	NA	NA	NA
AVA25724.1\|1360566_1362210_-\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZEB3	Stx2-converting_phage	1.5e-99	41.9
AVA25725.1\|1362257_1362608_-\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZDM8	Stx2-converting_phage	1.8e-31	56.7
AVA25726.1\|1362604_1363033_-\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA25727.1\|1363582_1364428_-	NAD-dependent epimerase/dehydratase family protein	M4QPK0	Synechococcus_phage	1.8e-08	21.4
AVA25728.1\|1364424_1365651_-	methyltransferase domain-containing protein	A0A1V0SJ68	Klosneuvirus	9.2e-30	27.4
AVA25729.1\|1365647_1366199_-	dTDP-4-dehydrorhamnose 3,5-epimerase 2	I7HJC4	Enterobacteria_phage	2.8e-26	40.8
AVA25730.1\|1366195_1367272_-	CDP-glucose 4,6-dehydratase	J7Q7J8	Aeropyrum_coil-shaped_virus	9.6e-15	28.7
AVA25731.1\|1367274_1368042_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
AVA25732.1\|1368093_1369776_-	hypothetical protein	NA	NA	NA	NA
AVA25733.1\|1369772_1371074_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVA25734.1\|1371098_1372271_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVA25735.1\|1372280_1373198_-	glycosyltransferase family protein	NA	NA	NA	NA
AVA25736.1\|1373208_1374321_-	SAM-dependent methyltransferase protein	NA	NA	NA	NA
AVA25737.1\|1374317_1375643_-	polysaccharide ABC transporter Wzt-like ATP-binding protein	A0A2K9L0W2	Tupanvirus	3.2e-12	27.5
AVA25738.1\|1375639_1376434_-	polysaccharide ABC transporter permease protein	NA	NA	NA	NA
AVA25739.1\|1376475_1377429_-	NAD-dependent epimerase/dehydratase family protein	M1NML0	Moumouvirus	9.0e-17	30.9
AVA25740.1\|1377439_1378423_-	GDP-mannose 4,6-dehydratase	M1HVB5	Paramecium_bursaria_Chlorella_virus	2.7e-88	50.9
AVA25741.1\|1378441_1379623_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVA25742.1\|1379962_1381255_-	hypothetical protein	NA	NA	NA	NA
AVA25743.1\|1381278_1381803_-	hypothetical protein	NA	NA	NA	NA
AVA25744.1\|1381812_1384968_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
AVA25745.1\|1385347_1386157_+	ABC-2 type transporter permease protein	NA	NA	NA	NA
AVA25746.1\|1387180_1387462_+\|transposase	IS3 family insertion sequence transposase domain-containing protein	S5WIU1	Leptospira_phage	4.8e-11	42.0
AVA25747.1\|1387479_1387938_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZBP6	Stx2-converting_phage	4.1e-07	39.5
AVA25748.1\|1388158_1390258_-	resolvase/recombinase protein	NA	NA	NA	NA
AVA25749.1\|1390550_1391030_-\|transposase	IS630 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA25750.1\|1391706_1393296_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA25751.1\|1393315_1393690_+\|transposase	IS3 family insertion sequence transposase domain-containing protein	S5WIU1	Leptospira_phage	2.6e-12	47.1
AVA25752.1\|1393898_1395152_-	hypothetical protein	NA	NA	NA	NA
AVA25753.1\|1395193_1396321_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
AVA25754.1\|1396679_1397600_-	nucleotidyltransferase HEPN domain-containing protein	NA	NA	NA	NA
AVA25755.1\|1397876_1398584_-\|transposase	IS3 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA25756.1\|1398618_1398885_-\|transposase	IS3 family insertion sequence transposase protein	NA	NA	NA	NA
AVA25757.1\|1399152_1400064_-\|transposase	IS110 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA25758.1\|1400164_1400383_-	hypothetical protein	NA	NA	NA	NA
AVA25759.1\|1401781_1403455_-	hypothetical protein	NA	NA	NA	NA
AVA25760.1\|1403514_1404588_-	glycosyltransferase family 2 protein	F1C5B0	Cronobacter_phage	9.4e-47	35.9
AVA25761.1\|1404722_1405892_-	acyltransferase 3 family protein	NA	NA	NA	NA
AVA25762.1\|1406186_1406477_-	hypothetical protein	NA	NA	NA	NA
AVA25763.1\|1408114_1409008_+\|transposase	ISNCY family insertion sequence transposase domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1704330 : 1718873

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA26050.1\|1704330_1704774_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA26051.1\|1704770_1705124_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA26052.1\|1705188_1706388_+\|transposase	IS66 family insertion sequence transposase domain-containing protein	S5VTD3	Leptospira_phage	2.2e-28	33.6
AVA26053.1\|1706369_1707665_-	reverse transcriptase protein	A0A0U4J920	Pseudomonas_phage	3.4e-27	41.0
AVA26054.1\|1708304_1708880_+\|transposase	IS66 family insertion sequence transposase domain-containing protein	A0A0P0ZEB3	Stx2-converting_phage	2.1e-32	41.4
AVA26055.1\|1709563_1709917_-	hypothetical protein	NA	NA	NA	NA
AVA26056.1\|1711470_1716129_+	helicase/restriction endonuclease domain-containing protein	NA	NA	NA	NA
AVA26057.1\|1716274_1717261_+	crotonase/enoyl-CoA hydratase family protein	NA	NA	NA	NA
AVA26058.1\|1717543_1717825_+	hypothetical protein	NA	NA	NA	NA
AVA26059.1\|1718097_1718526_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA26060.1\|1718522_1718873_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZDM8	Stx2-converting_phage	1.8e-31	56.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP024313

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

232033 : 246985

Streptococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA24187.1\|232033_232402_+\|transposase	IS66 family insertion sequence transposase protein	A0A1B0YZU7	Pseudomonas_phage	4.0e-05	40.3
AVA24188.1\|232398_232746_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZBY2	Stx2-converting_phage	1.1e-25	54.3
AVA24189.1\|233791_234322_+	hypothetical protein	NA	NA	NA	NA
AVA24190.1\|235055_237125_-	resolvase/recombinase protein	K4JU73	Streptococcus_phage	2.0e-08	21.0
AVA24191.1\|237111_237291_-	hypothetical protein	NA	NA	NA	NA
AVA24192.1\|237292_237676_+	hypothetical protein	NA	NA	NA	NA
AVA24193.1\|237830_238172_+	hypothetical protein	NA	NA	NA	NA
AVA24194.1\|238168_238348_+	hypothetical protein	NA	NA	NA	NA
AVA24195.1\|238392_239634_-	biotin carboxylase-like ATP-grasp domain-containing protein	NA	NA	NA	NA
AVA24196.1\|239699_240548_-	glutamate 5-kinase 2	A0A1X9I5D0	Streptococcus_phage	2.0e-39	35.9
AVA24197.1\|240705_241980_-	biotin carboxylase-like ATP-grasp domain-containing protein	NA	NA	NA	NA
AVA24198.1\|242216_242645_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24199.1\|242641_242893_+\|transposase	IS66 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA24200.1\|242863_244981_-	resolvase/recombinase protein	NA	NA	NA	NA
AVA24201.1\|244977_245259_-	hypothetical protein	NA	NA	NA	NA
AVA24202.1\|245273_245753_-\|transposase	IS630 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA24203.1\|245808_245985_+	hypothetical protein	NA	NA	NA	NA
AVA24204.1\|245961_246189_-	hypothetical protein	NA	NA	NA	NA
AVA24205.1\|246424_246985_+\|transposase	IS66 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_2

250151 : 269921

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA24209.1\|250151_250529_-\|transposase	IS110 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA24210.1\|251038_251827_+	rhamnosyl O-methyltransferase/cephalosporin hydroxylase protein	NA	NA	NA	NA
AVA24211.1\|253262_254603_+	nitrilotriacetate monooxygenase component A protein	NA	NA	NA	NA
AVA24212.1\|255183_255606_+\|transposase	IS3 family insertion sequence transposase domain-containing protein	NA	NA	NA	NA
AVA24213.1\|255602_256472_+\|transposase	IS3 family insertion sequence transposase protein	U5P429	Shigella_phage	2.8e-33	35.9
AVA24214.1\|256967_257852_-	RpiR family transcriptional regulator protein	NA	NA	NA	NA
AVA24215.1\|258080_259406_+	aminotransferase family protein	NA	NA	NA	NA
AVA24216.1\|259416_259968_+	carboxymuconolactone decarboxylase protein	NA	NA	NA	NA
AVA24217.1\|260155_260989_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVA24218.1\|261045_262020_+	amino acid ABC transporter permease protein	NA	NA	NA	NA
AVA24219.1\|262136_262880_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-27	37.9
AVA24220.1\|263582_264419_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVA24221.1\|264535_264739_-	hypothetical protein	NA	NA	NA	NA
AVA24222.1\|264737_265964_+	endoribonuclease L-PSP protein	NA	NA	NA	NA
AVA24223.1\|266111_267254_+	L-lactate dehydrogenase (cytochrome) protein	NA	NA	NA	NA
AVA24224.1\|267578_267941_+\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24225.1\|267937_268285_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZBY2	Stx2-converting_phage	7.8e-27	53.9
AVA24226.1\|268355_269921_+\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZEB3	Stx2-converting_phage	7.2e-112	44.0

DBSCAN-SWA_3

325724 : 355473

Leptospira_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA24269.1\|325724_327323_-\|transposase	IS66 family insertion sequence transposase protein	A0A0P0ZEB3	Stx2-converting_phage	3.0e-73	35.5
AVA24270.1\|327398_327743_-\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24271.1\|327739_328111_-\|transposase	IS66 family insertion sequence transposase protein	NA	NA	NA	NA
AVA24272.1\|328533_328716_+	hypothetical protein	NA	NA	NA	NA
AVA24273.1\|328869_329418_-	hypothetical protein	NA	NA	NA	NA
AVA24274.1\|329495_330902_+	radical SAM domain-containing protein	S5VT21	Leptospira_phage	3.3e-31	25.9
AVA24275.1\|330898_331981_+	radical SAM domain-containing protein	S5WIP3	Leptospira_phage	1.8e-45	32.6
AVA24276.1\|331977_332604_+	peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
AVA24277.1\|332643_333795_+\|protease	Clp protease family protein	NA	NA	NA	NA
AVA24278.1\|333799_334555_-	hypothetical protein	NA	NA	NA	NA
AVA24279.1\|334557_336468_-	protein kinase-like domain-containing protein	NA	NA	NA	NA
AVA24280.1\|336464_337235_-	protein phosphatase 2C-like protein	NA	NA	NA	NA
AVA24281.1\|337231_337912_-	tellurite resistance TerY protein	NA	NA	NA	NA
AVA24282.1\|337899_338121_+	hypothetical protein	NA	NA	NA	NA
AVA24283.1\|338446_338812_+	hypothetical protein	NA	NA	NA	NA
AVA24284.1\|338831_339233_+	hypothetical protein	NA	NA	NA	NA
AVA24285.1\|339431_340853_+\|transposase	ISNCY family insertion sequence transposase protein	NA	NA	NA	NA
AVA24286.1\|340859_341597_-	hypothetical protein	NA	NA	NA	NA
AVA24287.1\|341951_343241_-	HipA-like protein	NA	NA	NA	NA
AVA24288.1\|343240_343588_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AVA24289.1\|343759_343948_-	hypothetical protein	NA	NA	NA	NA
AVA24290.1\|343974_344229_-	hypothetical protein	NA	NA	NA	NA
AVA24291.1\|344241_345057_-	pyrroline-5-carboxylate reductase protein	NA	NA	NA	NA
AVA24292.1\|345166_345673_-	hypothetical protein	NA	NA	NA	NA
AVA24293.1\|345900_352365_+	amino acid adenylation domain-containing protein	A0A2K9L3I8	Tupanvirus	7.1e-113	24.0
AVA24294.1\|352361_353771_+	multi antimicrobial extrusion MatE family protein	NA	NA	NA	NA
AVA24295.1\|353958_354645_+	4'-phosphopantetheinyl transferase protein	NA	NA	NA	NA
AVA24296.1\|354942_355473_+\|transposase	IS6 family insertion sequence transposase domain-containing protein	A0A077SL39	Escherichia_phage	3.3e-37	61.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP024311

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP024314

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP024313

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection