CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026571	Proteus mirabilis strain BC11-24 chromosome, complete genome	2 crisprs	DEDDh,c2c9_V-U4,cas3,DinG,csa3,RT	0	5	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026571_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026571_1

784152-784589

TypeV-U4

Consensus_repeat	Method
TAGGTAAATTAGNANGGAANGAAATATATA	CRT

7 spacers

The CRISPR arrays of CP026571_1

>merge|CP026571|1|784152-784589|CRT
TAGATAAATTAGGAGGAAAAGAAATATATACTTTAATTTCTATTCTGAAAGAGATAGAGTTAGGTAAATTAGGAGAGAACGAAATATATACTTTAATTTCTATTCTGAAAGAGATAGAACTAGATAAATTAGAATGGAACGAAATATATACTTTAATTTCTATTCTGAAAAGGATGGAGCTAGGTAAATTAGAATGGAACGAAATTCCTATTCTGAAAGGGATGGAACTAGGTAAATTAGAATGGAAAGAAATATATAATTTAATTTCTCTTCTGAAAGAGATAGAACTAGGTAAATTAGGAAGGAACGAAATATATACTTTAATTCCTATTCTGAAAGGGTTGGAACTAGGTGAATTAGAATCGAACGAAATATATACTTTAATTCCTCTTCTGAAAGAGATAGAACGAGGTAAATTAAGAGGGAAAGGAATATATA

>CP026571|1|1|784152-784589|CRT
TAGATAAATTAGGAGGAAAAGAAATATATA	CTTTAATTTCTATTCTGAAAGAGATAGAGT
TAGGTAAATTAGGAGAGAACGAAATATATA	CTTTAATTTCTATTCTGAAAGAGATAGAAC
TAGATAAATTAGAATGGAACGAAATATATA	CTTTAATTTCTATTCTGAAAAGGATGGAGC
TAGGTAAATTAGAATGGAACGAAATTCCTA	TTCTGAAAGGGATGGAAC
TAGGTAAATTAGAATGGAAAGAAATATATA	ATTTAATTTCTCTTCTGAAAGAGATAGAAC
TAGGTAAATTAGGAAGGAACGAAATATATA	CTTTAATTCCTATTCTGAAAGGGTTGGAAC
TAGGTGAATTAGAATCGAACGAAATATATA	CTTTAATTCCTCTTCTGAAAGAGATAGAAC
GAGGTAAATTAAGAGGGAAAGGAATATATA

Protein	Signature genes	Signature genes Name	Protein_function
CP026571.1\|AVA39147.1\|775867_776512_+\|hypothetical-protein	unknown	unknown	unknown
CP026571.1\|AVA39157.1\|787028_788609_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|236810
CP026571.1\|AVA39146.1\|774214_775468_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP026571.1\|AVA39155.1\|785340_786381_+\|ammonia-monooxygenase	unknown	unknown	gnl\|CDD\|377472
CP026571.1\|AVA39145.1\|772850_774218_-\|C4-dicarboxylate-ABC-transporter	unknown	unknown	gnl\|CDD\|182621
CP026571.1\|AVA39158.1\|788767_789310_+\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|185321
CP026571.1\|AVA39160.1\|790870_791812_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP026571.1\|AVA39162.1\|792768_793998_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340874
CP026571.1\|AVA39151.1\|780002_781214_-\|UPF0261-family-protein	unknown	unknown	gnl\|CDD\|179420
CP026571.1\|AVA39152.1\|781449_782085_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
CP026571.1\|AVA39154.1\|784816_785227_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026571.1\|AVA39153.1\|782148_782781_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|377981
CP026571.1\|AVA39161.1\|791808_792579_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|237896
CP026571.1\|AVA39159.1\|789369_790023_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|182460
CP026571.1\|AVA39148.1\|776635_777976_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240539
CP026571.1\|AVA39149.1\|778174_779074_+\|diaminopimelate-dehydrogenase	unknown	unknown	gnl\|CDD\|273877
CP026571.1\|AVA39150.1\|779158_779986_-\|phosphoenolpyruvate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|378168
CP026571.1\|AVA39163.1\|794086_794269_+\|DUF2526-domain-containing-protein	unknown	unknown	gnl\|CDD\|287680
CP026571.1\|AVA39156.1\|786465_786828_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|370620
CP026571.1\|AVA39144.1\|770909_772232_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226206

Protein	Function_ID	Function_description	E-value
CP026571.1\|AVA39157.1\|787028_788609_+\|multicopper-oxidase-CueO	gnl\|CDD\|236810	PRK10965, PRK10965, multicopper oxidase; Provisional.	0
CP026571.1\|AVA39146.1\|774214_775468_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP026571.1\|AVA39155.1\|785340_786381_+\|ammonia-monooxygenase	gnl\|CDD\|377472	pfam05145, AbrB, Transition state regulatory protein AbrB. Bacillus subtilis respond to a multitude of environmental stimuli by using transcription factors called transition state regulators (TSRs). They play an essential role in cell survival by regulating spore formation, competence, and biofilm development. AbrB is one of the most known TSRs, acting as a pleotropic regulator for over 60 different genes where it directly binds to their promoter or regulatory regions. Many other genes are indirectly controlled by AbrB since it is a regulator of other regulatory proteins, including ScoC, Abh, SinR and SigH. Hence, AbrB is considered a global regulatory protein controlling processes such as Bacillus subtilis growth and cell division as well as production of extracellular degradative enzymes, nitrogen utilization and amino acid metabolism, motility, synthesis of antibiotics and their resistant determinants, development of competence, transport systems, oxidative stress response, phosphate metabolism, cell surface components and sporulation. AbrB is a tetramer consisting of identical 94 residue monomers. Its DNA-binding function resides solely in the N-terminal domain (AbrBN) of 53 residues. Although it does not recognize a well-defined DNA base-pairing sequence, instead, it appears to target a very weak pseudo consensus nucleotide sequence, TGGNA-5bp-TGGNA, which allows it to be rather promiscuous in binding. The N-terminal domains of very similar sequences are present in two more Bacillus subtilis proteins, Abh and SpoVT. Mutagenesis studies suggest that the role of the C-terminal domain is in forming multimers.	2.05368e-53
CP026571.1\|AVA39145.1\|772850_774218_-\|C4-dicarboxylate-ABC-transporter	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	3.96049e-132
CP026571.1\|AVA39158.1\|788767_789310_+\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|185321	PRK15423, PRK15423, hypoxanthine phosphoribosyltransferase; Provisional.	7.63542e-100
CP026571.1\|AVA39160.1\|790870_791812_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.72604e-104
CP026571.1\|AVA39162.1\|792768_793998_+\|MFS-transporter	gnl\|CDD\|340874	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily. This family is composed of metazoan synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters including those that transport inorganic phosphate (Pht), aromatic compounds (PcaK and related proteins), proline/betaine (ProP), alpha-ketoglutarate (KgtP), citrate (CitA), shikimate (ShiA), and cis,cis-muconate (MucK), among others. SV2 is a transporter-like protein that serves as the receptor for botulinum neurotoxin A (BoNT/A), one of seven neurotoxins produced by the bacterium Clostridium botulinum. BoNT/A blocks neurotransmitter release by cleaving synaptosome-associated protein of 25 kD (SNAP-25) within presynaptic nerve terminals. Also included in this family is synaptic vesicle 2 (SV2)-related protein (SVOP) and similar proteins. SVOP is a transporter-like nucleotide binding protein that localizes to neurotransmitter-containing vesicles. The SV2-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.45898e-74
CP026571.1\|AVA39151.1\|780002_781214_-\|UPF0261-family-protein	gnl\|CDD\|179420	PRK02399, PRK02399, hypothetical protein; Provisional.	0
CP026571.1\|AVA39152.1\|781449_782085_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	6.28963e-08
CP026571.1\|AVA39154.1\|784816_785227_-\|N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.05718e-14
CP026571.1\|AVA39153.1\|782148_782781_+\|transcriptional-regulator	gnl\|CDD\|377981	pfam08348, PAS_6, YheO-like PAS domain. This family contains various hypothetical bacterial proteins that are similar to the E. coli protein YheO. Their function is unknown, but are likely to be involved in signalling based on the presence of this PAS domain.	3.90041e-42
CP026571.1\|AVA39161.1\|791808_792579_+\|ABC-transporter-permease	gnl\|CDD\|237896	PRK15066, PRK15066, inner membrane transport permease; Provisional.	2.85711e-169
CP026571.1\|AVA39159.1\|789369_790023_-\|carbonate-dehydratase	gnl\|CDD\|182460	PRK10437, PRK10437, carbonic anhydrase; Provisional.	2.09499e-129
CP026571.1\|AVA39148.1\|776635_777976_-\|MATE-family-efflux-transporter	gnl\|CDD\|240539	cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria.	1.36818e-169
CP026571.1\|AVA39149.1\|778174_779074_+\|diaminopimelate-dehydrogenase	gnl\|CDD\|273877	TIGR01921, Meso-diaminopimelate_D-dehydrogenase, diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.	1.3821e-113
CP026571.1\|AVA39150.1\|779158_779986_-\|phosphoenolpyruvate-hydrolase-family-protein	gnl\|CDD\|378168	pfam09370, PEP_hydrolase, Phosphoenolpyruvate hydrolase-like. This domain has a TIM barrel fold related to IGPS and to phosphoenolpyruvate mutase/aldolase/carboxylase.	0
CP026571.1\|AVA39163.1\|794086_794269_+\|DUF2526-domain-containing-protein	gnl\|CDD\|287680	pfam10735, DUF2526, Protein of unknown function (DUF2526). This family of proteins with unknown function is restricted to Enterobacteriaceae. The family has a highly conserved sequence.	3.07288e-13
CP026571.1\|AVA39156.1\|786465_786828_-\|hypothetical-protein	gnl\|CDD\|370620	pfam09691, T2SS_PulS_OutS, Type II secretion system pilotin lipoprotein (PulS_OutS). This family comprises lipoproteins from four gamma proteobacterial species: PulS protein of Klebsiella pneumoniae (P20440), the OutS protein of Erwinia chrysanthemi (Q01567) and Pectobacterium chrysanthemi, and the functionally uncharacterized E. coli protein EtpO. PulS and OutS have been shown to interact with and facilitate insertion of secretins into the outer membrane, suggesting a chaperone-like, or piloting function for members of this family. In the pilotin from this four-helix protein from enterohemorrhagic Escherichia coli, the straight helix alpha2, the curved helix alpha3 and the bent helix alpha4 surround the central N-terminal helix alpha1. These helices create a prominent groove, mainly formed by side chains of helices 1,2 and 3 suggesting this groove is important as a binding site.	0.00486465
CP026571.1\|AVA39144.1\|770909_772232_-\|hypothetical-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	8.18446e-174

>CP026571.1|AVA39153.1|782148_782781_+|transcriptional-regulator
MSHKTADQEWLVEQLKYIAQGIGKTLSPFCEVVLHDLTDSENTIMVIENNLSGRKVGDRATELGMARIESSDFPQIVANYPNQFPDGRTAKSTSIGIKDKQGNYVAALCLNIDISMIKGLQMVLNQFSTLEEGNHIIETFSSVTEDSLKKRIDEFSATYSVTPRALKPHQRRELLLCLQDEGYLSLRKAMEITAQYLGVSRATVYNDLKE
>CP026571.1|AVA39152.1|781449_782085_+|TetR/AcrR-family-transcriptional-regulator
MSFSRNEIDTMSGTRKRTYQLLVTTALQLFEQGMLPTVSELAAHAGVSRATAYRYFPTQSDLISATVDASLAPIIAWQPTPEDNTQQRITALLNLAYPQMFKHEGALRGALQVSLQQWAKERQSSEYTEKRFIRGHRKEILLKVIEPLKAHYPQEMWDKVIKAFSLIYGSEVFLVMKDIWKMDDQQVIDMTQWMAKAILNQAKSDFPIDND
>CP026571.1|AVA39151.1|780002_781214_-|UPF0261-family-protein
MKQYAGFIYIATTLDTKSAEIFYVSELIKKAGLPVKTVDLTTKPTALEREADVTAAQVASYHPDGKNAVFCGDRGKAIAAMSVAFERYLTHCDDVLAILGLGGSGGTALITPAMQSLPIGVPKLMVSTMASGDISGYIGASDISMMYSVTDVSGLNRISRKVLRNAANQIAGAVYFYQEENSVDKPAVALTMFGVTTPCIQQLTKKLENNYDCLVFHATGSGGKAMEKLIDSHLLHSVLDLTTTEVCDYLFEGVLACDEDRFGAIARTKTPCIVSCGALDMVNFGRPATVPEKYKDRHFYHHNSQVTLMRTTPRENRQMGIWIAEKLNQCEGPLTFIFPQGGFSALDIEGGPFWDPQANQAFFDAFITTFKETETRQLVISPYHINSAEFNQQVYDLHQELIC
>CP026571.1|AVA39150.1|779158_779986_-|phosphoenolpyruvate-hydrolase-family-protein
MTYSREVLLKKFNDMIARKEPIIGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGSLAGLLAYGNANEIVMDMAKEVLPVVKQTPVLAGVNGTDPFCNFDKFLDDVKAIGFAGVQNFPTVGLIDGNFRANLEETGMGYALEVEMIRKAHEKGLLTTPYVFSREDAIAMTQAGADIIVPHMGLTTGGNIGAETAVTLDDCVALINDWAKAAKSVRSDVIVLCHGGPIATPKDAQYILDNCPDCHGFYGASSMERLPTEVALTATTKEFKNIKR
>CP026571.1|AVA39149.1|778174_779074_+|diaminopimelate-dehydrogenase
MNTKIKVAIVGYGNIGRFALDAVLAAPDFELVGVVRRDSQNIPDELRNITVTNDIKSLGKVDVALLCSPTRAIKDLAKSILSLGINTVDSFDVHSDIVALKTELDEVAKKHNRVAVISAGWDPGSDSIIRTLMLAMAPKGITYTNFGPGMSMGHSVAAKAIDGVRDALSMTIPLGTGVHRRMVYVELETGANFAQVEQAIKADSYFSSDETHIKQVDSVDSLKDVGHGVQMTHKGVSGKTHNQLFEYAMHINNPALTSQFMVSAARASMKQQAGAYTVIEIPPVDFLAGDLTTLIAKLV
>CP026571.1|AVA39148.1|776635_777976_-|MATE-family-efflux-transporter
MHQSDVADRSLFSLSWPIFIDIFLHLATLLINTYMISHVSTAYLAAMGVGNQVFDLFITIFNFISVGCSVVIAQYLGAGKRDKASQAIHISIAFNFLLGFSSAIIILFFGYNILNVMNTPEHLVQDGYNYLHILGICLIPEAISIILAACLRVYGKSKAAMYVTLIANIVTVIGNMIVLYGFFGLPQYGLVGVAWSTVVGRIIAVVLLCGLLFYGLRIKFDIRLLVIWSKNMLAKILHIGLPAAGENLVWILHYMTASAFIGLMGEVPLAAQTLYFQLSLFLMLFGIAISIGNEILVGHLVGAKRFDEAFTRGFKSLKAGVLFTIGVVIIYWFMRDPILYSITEDQRIIDQLLPLFILSVFLEPGRTFNIVMVNALRAAGDAKFPLITAVCFMWGIAIPVGYFLGIKMEMGLIGIWIGFLCDEWLRGLTNAWRWRSRKWQAKRLDI
>CP026571.1|AVA39147.1|775867_776512_+|hypothetical-protein
MFILNVIKSTLSSIKSINNETSKVNAGLNSVIISCYNTIVSFIKPFFHENLKYSEIKTHINNIENKKNDKNIPLNNEKIIGVTQKIKADKIDSIALSNAKIKAKSDEIKETIINEIISSLEEIPTLEKKDITQFKEELLFHTKRILFSGNVLSLTEVKNDFLGAIIDSILKSDDKIKSEFGNINTYKYFLLNSINETVSRLLANDKNLVKNGEK
>CP026571.1|AVA39146.1|774214_775468_-|peptidase-T
MNIVDRFISYTKVNTTTNRENGAAGIMPSSEGQRVLALQLVEELKALGVEDIKIRDTAIVTATLPSNLDYEVPTVAFFGHLDTSAEQTNDTKAQILPYKGGDLCLNKELEIFLRQSEFPELENYIGDDIIVTDGTSLLGADDKAAIASIMDMLQYFKQHPEVKHGTVKIGFVPDEEQGLRGAKAFDVAEFGADFAYTLDCCGIGELVYENWNAGDVEITFIGTSAHPMSAKGKLKNSLLMAHKFIAMLPGGEAPEYTEGREGYYWVKQLAGNSARTVLKMDVRDFTEAGYAHRMAFLKQLSEQCEALWGEGTVVCKQADRYANVFNSLQGENRYPIDIAIDAYKANGITPRPIPMRGGYDGAALSQKGLPCPNIFTGAHNFHSIYEYLPVKSLYAASDVLKSVVKITAERFAPGAKA
>CP026571.1|AVA39145.1|772850_774218_-|C4-dicarboxylate-ABC-transporter
MIQILAVLIVVIIVARMILKGYKAEPVLLVAGLILMALTMIFGWGDILPKNVKTTGISWLDPFEVMRDLFSSRAADLGLMIMALMGFAHYMDHIGANEAVVRVATRPLKNMRSPYVLLFFSFLLASILQLAIPSATGLAVLLMGTMFPIMIGLGLSPASAAGVIATSLGVAYTPTAIDAIRGAKAVDLGVVEYVLYYQGPAAIATVLAVGITHIFWQRHCDRKAGFVPQLGKIAEEAKSDKNIPGFYALLPMLPIIMAVSSSSLFVEGIHLDVVTIVLISMAICMLIETLRLRDFKSVCAGFQHFLKGMGSAFSNVVGLLVAAGVFAHGIKVSGAIDSLIVMAESVGLPPFAMALVFAIVTLAAAIIMGSGNAPFLAFVELIPQIAHSMGVNPIAMILPMQQASHMGRGMSPVAGVIIAVSSGAKLQPFDVVKRTAVPLVVGFVFHCAIIAIFYY
>CP026571.1|AVA39144.1|770909_772232_-|hypothetical-protein
MKEQLSSYWKILIEAVKQQVKPALGCTEPISLALAAATAARYLQHNITRISAEVSPNLMKNGMGVTVPGTGMVGLSIAASLGAVAGDSEAGLEVLKNATPEQVELSKNLLNSGIVCVSIKKACQEVLYSEVTVEDGENSATVIIAGDHTNIVKIIHNGQVVLDKLSSQSEQTASPCQIKQALTNTNTREIYQLITQAPVEEISFILQSAQLNDALSKEGLNNTYGLHIGQTLQRQQQRGLLAKDLLSEIMIRTSAASDARMGGAVLPAMSNSGSGNQGIAATMPVVVVAEYLQVSEEKMARALMLSHLLAIYIHHKFPALSALCAATTASMGAAGAIAWLMEERYEPMAMAISSMIGDISGVICDGASNSCAMKVSTGASAAYKAVLMALDDTCVTGNDGIVTHDVDMTIENLCALASRAMQHTDVQIIEIMEYKAVANG
>CP026571.1|AVA39154.1|784816_785227_-|N-acetyltransferase
MSLKITTAPTTNEINEIYEGLLTHNLQYIQMEQYTPLAVFKEENGKKIGGITGDILGNWLRIRYLWVDKAYRGNNIGTELLQAMENTAKKKGAKYAEVDTFSFQALPFYQKQGFEVFGTLENYPISDKKYYLNKVL
>CP026571.1|AVA39155.1|785340_786381_+|ammonia-monooxygenase
MSFLKKLPGILFCALIGGLLTLSGLPMALMFGPIVVVIIAYRFKWQLSVPKHTLTFIQLTLGTSVGLMFNQVHLGSADNLVLLLIILVICLAIQFVVSFLWFHRHIGWTKEEAMLGAVPGAMAAILALTDHTKTPPQKIVISHTIRLIVLIIMAGFIVGSDKATLTEFTLPEMTLLSSMWLLLIVALGLVSGLLLQRIHFPAPFMLTSLGSAILVQSFVSEPIAFPMLLNELSMVLIGMNIGAHFVVFPFASLIKNAFSSVQVVIINVILTVIVALSAAYLTGVPWTTLVLAWAPGSMEAMTFAAITMNVDAAFVMSNHILRMLIIQSIPSIALFYSERKQKRKRE
>CP026571.1|AVA39156.1|786465_786828_-|hypothetical-protein
MSPLMKKMFALFCTVILSFATLFSSSAKALTYTQAEDLADLTAVYLFLNNDCGYEQISKQKIERALIIFSQSQQWDVSNYSMLPMSKLNEDSYQDLKNIQIAHNKKCQLLAQKSLSLLNY
>CP026571.1|AVA39157.1|787028_788609_+|multicopper-oxidase-CueO
MQRREFLKLGATLSAVTLLPSWSRLAFAQTNTPSLAIPPQISPDKQQKIVLNIQQGVSQFTATASTTTWGYNGSLLGPALKLKRGEPVTIEINNTLPETTTVHWHGLEISGEQDGGPQATIAPGKSRTVTFTPDQAESTCWFHPHTHGITGKQVAMGLGGLVIIEDDETAKRKLPHRWGVDDLPVILQDKRLDSNGQIDYQLDVMSAAVGWFGDMMLTNGAIQPQHIVPKGWIRLRFLNGCNARSLNLATSDGRPMYVIASDGGLLAEPVKVTELPILMGERFEVLVDTSDGRDFDIVTLPVRQMGMVLAPFDNVLPVLRLLPSAEKAVGILPDQLALIPALPSLSHIATRSLHLRMDMRLDMQGMMALTERYGDKALAGIHHGMSHMRQGNGNGMMRGGMNCGHGSADVDIYNANSINGIPFSMTEPAFDVKQGVYERWLVSGRGDMMLHPFHVHGTQFRILSENGRKPEKHRQGWKDIVRVEGQISEILVKFDHLATKEHPFMAHCHLLEHEDTGMMAGFTVSR
>CP026571.1|AVA39158.1|788767_789310_+|hypoxanthine-phosphoribosyltransferase
MKHIVDVMISEEEIKQRIAELGREITEHYRSRQEKHDLVLIGLLKGSFIFMADLCREIEVPHEVDFMTVSSYGNGMTSTRDVKIIKDLDEDIRGKDVLIVEDIIDSGNTLNRVKEILSLREPASIAICTLLDKPSRREVDVPVEWIGYSIEDKFVIGYGIDYAQRYRHLPYIGHVTLLDE
>CP026571.1|AVA39159.1|789369_790023_-|carbonate-dehydratase
MMRKIEELLANNKQWSGSVTEENPQFFKELSKGQKPHFLWIGCSDSRVPAEKLINAAPGDLFVHRNVANLVIHTDLNCLSVIQYAVDVLQVEHIIVCGHYGCGGIEAAIEGTELGLINNWLLHIRDIWYKHSSMLGELAPQDRLNLLCELNVIEQVYNLGHSTIMQAAWKRGQKVMIHGWVYGLNNGELHDLDITSDSREKLELSYRQAIAKLSHPR
>CP026571.1|AVA39160.1|790870_791812_+|ABC-transporter-ATP-binding-protein
MTYALELTELTKTYHNGVKALKGINLTVEAGDFYALLGPNGAGKSTTIGIISSLVNKSSGKVKVFGYDTDTDMVNAKRQLGLVPQEFNFNPFETVLQIVLNQAGYYGVPRKVALERAKTYLTQLDLWEKKDDRARFLSGGMKRRLMIARALMHEPKLLILDEPTAGVDIELRRSMWTFLQHLNAQGTTIILTTHYLEEAEMLCRNIGIIQRGELVENTSMKGLLSKLESETFILDLAAKSPLPELQNYQYRLVDTSTLEVDVKREQGLNGVFAQLNAQGIQVLSMRNKANRLEELFVHLVNEDHTETEKGERE
>CP026571.1|AVA39161.1|791808_792579_+|ABC-transporter-permease
MIQLYWVALKTIWIKEVTRFGRIWVQTLIPPVITMSLYFVIFGNLIGKRIGDMGGVDYMQFIVPGLIMMAVITNSYANVSSSFFGAKFQRSIEELLVSPVPTHVVIAGFVGGGVARGICVGILVTLVSLFFVPLEIHSWTMVVVTLLMTSIVFSLAGLLNAIFAKTFDDISIIPTFVLTPLTYLGGVFYSLSLLPAFWQGVSKLNPIVYMISGFRYGFLGITDVSLTVTITVLCLFIAVFYIVAWYLIEKGRGLRS
>CP026571.1|AVA39162.1|792768_793998_+|MFS-transporter
MAVASETAKEPTVLSRRKLLCIAGMGWTFDAMDVGLLAFLLTALKEDWGLTAAQLGWIGSINSIGMAVGAFVFGIMADRKGRKPVFILTLLLFSLGCGLTALASSLMVVLILRFFIGMGLGGELPVASTLVSESVKAHERGRIVVLLESFWAVGWLIAALIAYFIIPDYGWRMAMLLSALPAVYALYLRSKLPEPSSTQLLLQNRLSLRQSMTLIWSPQYRRSTLMLWVLWFCVVFSYYGIFLWLPSVAMLKGFSLIKSFQYVLIMTLAQLPGYFTAAWFIERYGRKFVLITYLAGTAISAYYFSVADSTTTLLVFGMLLSFFNLGAWGALYAYTPEQYPDGIRATGAGTATAIGRIGGILGPLMVGYLVQYQFEISTIFLIFSLSIVIAILAVMLLGKETKNRPLNSI
>CP026571.1|AVA39163.1|794086_794269_+|DUF2526-domain-containing-protein
MSHYEEVIKQVDEAIASASIQTMNELLVELGKDNTIAFAQRYEQQERLRTAIFHHGEKQR

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Crispr_ID: CP026571_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026571_2

2783863-2784005

Orphan

Consensus_repeat	Method
GGTGATATCAATTTCACAGGTGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP026571_2

>merge|CP026571|2|2783863-2784005|CRISPRCasFinder
GGTGATATCAATTTCACAGGTGGTGGCGCTGGTAATGTCATTAAATCTGATGTTACACAAGGTGATATCAATTTTACAGGTGGCGGCATAGCAAATGTAATAAAACATAACTCTAATTATGGTAATACCAACTTTACTGGTGG

>CP026571|2|1|2783863-2784005|CRISPRCasFinder
GGTGATATCAATTTCACAGGTGG	TGGCGCTGGTAATGTCATTAAATCTGATGTTACACAA
GGTGATATCAATTTTACAGGTGG	CGGCATAGCAAATGTAATAAAACATAACTCTAATTAT
GGTAATACCAACTTTACTGGTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026571.1\|AVA40932.1\|2805187_2806291_+\|GspE-family-protein	unknown	unknown	gnl\|CDD\|236694
CP026571.1\|AVA40924.1\|2777987_2778359_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235372
CP026571.1\|AVA40928.1\|2798081_2799953_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|236999
CP026571.1\|AVA40921.1\|2775418_2776153_-\|oxidative-stress-defense-protein	unknown	unknown	gnl\|CDD\|236840
CP026571.1\|AVA40922.1\|2776243_2776867_-\|arginine-exporter-ArgO	unknown	unknown	gnl\|CDD\|236463
CP026571.1\|AVA40931.1\|2804645_2805089_+\|prepilin-peptidase-dependent-pilin	unknown	unknown	gnl\|CDD\|236718
CP026571.1\|AVA42048.1\|2802795_2803566_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	unknown	unknown	gnl\|CDD\|181879
CP026571.1\|AVA40934.1\|2807764_2808379_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
CP026571.1\|AVA40929.1\|2799965_2802632_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
CP026571.1\|AVA40926.1\|2781947_2782175_+\|hypothetical-protein	unknown	unknown	unknown
CP026571.1\|AVA40918.1\|2772403_2773303_+\|chromosome-initiation-inhibitor	unknown	unknown	gnl\|CDD\|235144
CP026571.1\|AVA40930.1\|2803892_2804435_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	unknown	unknown	gnl\|CDD\|236984
CP026571.1\|AVA40927.1\|2796452_2797880_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
CP026571.1\|AVA40933.1\|2806287_2807487_+\|transporter	unknown	unknown	gnl\|CDD\|182559
CP026571.1\|AVA40923.1\|2777035_2777896_-\|mechanosensitive-ion-channel-protein-MscS	unknown	unknown	gnl\|CDD\|182386
CP026571.1\|AVA40920.1\|2774475_2775195_-\|hypothetical-protein	unknown	unknown	unknown
CP026571.1\|AVA40925.1\|2778529_2781127_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
CP026571.1\|AVA40935.1\|2808381_2809134_+\|cell-division-protein-ZapD	unknown	unknown	gnl\|CDD\|235389
CP026571.1\|AVA40917.1\|2771586_2772243_-\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234816
CP026571.1\|AVA40919.1\|2773504_2774479_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065

Protein	Function_ID	Function_description	E-value
CP026571.1\|AVA40932.1\|2805187_2806291_+\|GspE-family-protein	gnl\|CDD\|236694	PRK10436, PRK10436, hypothetical protein; Provisional.	1.37631e-179
CP026571.1\|AVA40924.1\|2777987_2778359_-\|hypothetical-protein	gnl\|CDD\|235372	PRK05248, PRK05248, hypothetical protein; Provisional.	9.00597e-61
CP026571.1\|AVA40931.1\|2804645_2805089_+\|prepilin-peptidase-dependent-pilin	gnl\|CDD\|236718	PRK10574, PRK10574, putative major pilin subunit; Provisional.	5.06138e-55
CP026571.1\|AVA40921.1\|2775418_2776153_-\|oxidative-stress-defense-protein	gnl\|CDD\|236840	PRK11087, PRK11087, oxidative stress defense protein; Provisional.	6.92322e-114
CP026571.1\|AVA40922.1\|2776243_2776867_-\|arginine-exporter-ArgO	gnl\|CDD\|236463	PRK09304, PRK09304, arginine exporter ArgO.	1.63858e-119
CP026571.1\|AVA42048.1\|2802795_2803566_-\|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR	gnl\|CDD\|181879	PRK09464, pdhR, pyruvate dehydrogenase complex transcriptional repressor PdhR.	1.72207e-168
CP026571.1\|AVA40934.1\|2807764_2808379_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.16412e-89
CP026571.1\|AVA40929.1\|2799965_2802632_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
CP026571.1\|AVA40918.1\|2772403_2773303_+\|chromosome-initiation-inhibitor	gnl\|CDD\|235144	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator.	1.29397e-161
CP026571.1\|AVA40930.1\|2803892_2804435_-\|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD	gnl\|CDD\|236984	PRK11789, PRK11789, 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD.	4.66599e-131
CP026571.1\|AVA40927.1\|2796452_2797880_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
CP026571.1\|AVA40933.1\|2806287_2807487_+\|transporter	gnl\|CDD\|182559	PRK10573, PRK10573, protein transport protein HofC.	1.04938e-108
CP026571.1\|AVA40923.1\|2777035_2777896_-\|mechanosensitive-ion-channel-protein-MscS	gnl\|CDD\|182386	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS.	3.21493e-120
CP026571.1\|AVA40928.1\|2798081_2799953_-\|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|236999	PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated.	0
CP026571.1\|AVA40925.1\|2778529_2781127_-\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
CP026571.1\|AVA40935.1\|2808381_2809134_+\|cell-division-protein-ZapD	gnl\|CDD\|235389	PRK05287, PRK05287, cell division protein ZapD.	9.25043e-119
CP026571.1\|AVA40917.1\|2771586_2772243_-\|ribose-5-phosphate-isomerase	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	5.44811e-141
CP026571.1\|AVA40919.1\|2773504_2774479_-\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	8.30543e-25

>CP026571.1|AVA40926.1|2781947_2782175_+|hypothetical-protein
MNHIPASGFIYMASIIKSMLENPCINKEFEKLIAADLLPILQNKTNMTENFTALHLIKKTSNRRIILKKNLFIIN
>CP026571.1|AVA40925.1|2778529_2781127_-|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MLEEYRKHVAERAAEGVVPKPLDATQTAALVELLKSPPKGEEEFLLDLIVNRVPPGVDEAAYVKAGFLTALAKGETTSPLITPEKAVELLGTMQGGYNIHALIEALDNDKLAPIAAKALSHTLLMFDSFYDVEEKAKAGNVYAKQIMQSWADGEWFTERPELAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGSVGPIKQIEALNKKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPYVPNKRGGGVVLGGKIAPIFFNTMEDAGALPIEVDVSKLNMGDVIDIYPYKGEIRNHETNELLETFALKTEVLIDEVRAGGRIPLIIGRGLTSKARSALGLPPSTLFRHAKAVEQSDRGFSLAQKMVGRACGRDGIRPGEYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPKPVDVTTHHTLPDFIMNRGGVSLRPGDGIIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVHAIPLYAIKEGLLTVEKKGKKNIFSGRILEIEGLPELKVEQAFELADASAERSAAGCTIKLDKAPIIEYLQSNIVLLKWMIAEGYGDRRTLERRITAMENWLADPQLLEADADAEYAAVIEIDLNEIKEPILCAPNDPDDARLLSEVANSKIDEVFIGSCMTNIGHFRAAGKLLDQHKGQLPTRLWVAPPTKMDAAQLTEEGYYSVFGKSGARIEVPGCSLCMGNQARVADGATVVSTSTRNFPNRLGTGANVYLASAELAAVASLLGRLPEPQEYLDFINKVDETAEDTYRYLNFDQLEQYTDKATQVIFQTTV
>CP026571.1|AVA40924.1|2777987_2778359_-|hypothetical-protein
MDYEFQRDLTGGILARFSMDHEAIGYWLNDEIQGDISLIDQILTEMDEVKGSEKQWQLIGKEYSLSIDDEEIMVRANTLHFETDDLEEGMSYYDNESIAFCGLDDFATMLQKYRLFILENRRS
>CP026571.1|AVA40923.1|2777035_2777896_-|mechanosensitive-ion-channel-protein-MscS
MNELPASLDEATGWFVANQELFIQYAVNIVAAFLILFIGLFVAKMVSKGVARILTLRHIDATVVTFLSVLVRYTVIAFTLIAVLGRLGVQTASVIAVLGAAGLAVGLALQGSLSNFAAGVLIVIFRPIRAGEYVMIGAVEGTVRDVQIFSTTLRSADDRIIVIPNSKIISSEVINLSREPNRRTQIIVGVAYDADIDKVKQVLGDVVAQDKRIQHNQGVTIRLHEMAPSSLNFVVRVWTTNDDAWPVYWDLMENFKRALDANNIGIPFPQMDVYMHQAQNTVMKAE
>CP026571.1|AVA40922.1|2776243_2776867_-|arginine-exporter-ArgO
MLTTFFQGFLLSAAMILPIGAQNAFVLQQGSKKQYHLMSAFLCALSDVILISGGVFGGSALLSQSEYLLLLITWGGVAFLLWYGWNAFKTAFTKEIELSQHKNQVKSRWRVIVTLVAVTWLNPHVYLDTFVVLGSIGGQLSAELRPWFTFGAVFASISWFFALSLLAAWFSPILSQVTAQRIINLFVGCVMWFIALQLAAQGWKNLF
>CP026571.1|AVA40921.1|2775418_2776153_-|oxidative-stress-defense-protein
MKVKAMVLASMLALGAPSIALAGAVPEGPHITTSGNATIKATPDMATLNIQVSEKAKDAAQAKKQVDERVAKYFAFLKENGVTKEDIDAANIRTQPNYEYDKKAERSVINGYTATRTVDVKIKKLDQLNTLLDGALAAGLNEINNVEFGVNDPEQYKAKAREVAIKNAIQQASSVAKGFGADLGAVYSVSYRAPEATPYPIARMKMDAMALSAPSPEAVKETYQQQSIEFKDYVDVVFELKTAK
>CP026571.1|AVA40920.1|2774475_2775195_-|hypothetical-protein
MKIKPLVEKEINRFEFGKIFTYRDLTPYLSNPETTVKAVSRLVKNGDIKRFAKGQFYRPKKGIFGEMQLSDAEKLKTFMYQNGKRKGYITGMGLYNRLGLTTQIPKTITIASDKSPQHKDFGTVEVKLVKAKVPVSESNREYLEILDVLSNIKKIPDSNPSEVMKVIAKKLKNIKKDGLYELINLASFYSPVTRALLGLLIENININLALELKKQLNPTTHYRIGLDSYWDNAEEWNIE
>CP026571.1|AVA40919.1|2773504_2774479_-|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MNLHNNPDVFLELINRTAEYFKIPEVYVEKDYWVTHVLLQLSLSEFRNDFIFKGGTALSKVFGLIKRFSEDVDLAMFNNRGLSSNQIKKCMKAAEETIAAGLTYIQKPDESKGSQFRKVYYKFPRIVSGEFGHASDVILLETNSFTSPEPFSFMPTESLIAEFIKKAQIEGGNEIITRYGLEKFEVNVLDIKRTVAEKILGLVRASSEADPKQALADKIRHIYDLCMIKRNKHYSQFFDSDSLWKMMDIVIQADRDQFREAGQWLDQPLHKSVLFSKSSEIWESIRGIFHGEFSELVYDSDLPSDDEVFSLLSSVASLLQKWSD
>CP026571.1|AVA40918.1|2772403_2773303_+|chromosome-initiation-inhibitor
MKRPDYRALQALDAVIRERGFERAAQKLCITQSAVSQRIKQLENLFGQPLLVRTVPPQPTEQGQKLLALLHQVEMLEEQWLGDENSGSTPLLLSLAVNADSLATWLLPALHPVLTQLPIRLNIQVEDETRTQERLRRGEVVGAISIQPQALPSCLVDQLGALDYLFVASPDFAQRYFANGVTKSSLLKAPAVAFDHLDDMHQAFLQQNFGLSPGSVPCHIVNSSEAFVQLAKQGSTCCMIPHLQIADELKSGELIDLTPGLCQRRMLYWHRFAPESRTMRKVTDALLDYGRKVLKQDEE
>CP026571.1|AVA40917.1|2771586_2772243_-|ribose-5-phosphate-isomerase
MTQDELKKAVGWAALEYVKPGTIVGVGTGSTASHFIDALATMKGQIEGAVSSSEASTAKLKSYGIPVFDCNEVDSLDIYVDGADEINHQMQMIKGGGAALTREKIIAAVAKTFVCIVDESKQVDVLGKFPLPVEVIPMARSYVARELVKLGGLPEYRENVVTDNGNVILDVYNLTILNPIELENKINSIAGVVTVGLFANRGADIVLMGTSEGVKTIK
>CP026571.1|AVA40927.1|2796452_2797880_-|dihydrolipoyl-dehydrogenase
MSTEIKAQVVVLGAGPAGYSAAFRCADLGLDTVLVERHSTLGGVCLNVGCIPSKALLHVAKVIEEAKALSEHGVVFDAPKTDIDKIRIWKDKVISQLTGGLAGMAKGRKVNVVNGEARFTGSHTLSVEGSEGTTTITFENAIVAAGSRPIELPFIPHEDPRVWDSTDALQLKTVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDVVKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKLLDAGKAGIEVDDRGFIHVDKQMRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVISGKKHYFDPKVIPSIAYTEPEVAWVGMTEKEAKEKGVSYEVATFPWAASGRAIASDCADGMTKLIFDKETNRVIGGAIVGSNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLYESIGMAAEVFEGSITDLPNPKAKKKK
>CP026571.1|AVA40928.1|2798081_2799953_-|pyruvate-dehydrogenase-complex-dihydrolipoyllysine-residue-acetyltransferase
MSIEIKVPDIGADEVEVTEVMVKVGDRIEEEQSLITVEGDKASMEVPSPQAGIVKEIKIAVGDKVETGSLIMIFDTEEGAQAPAQEAAPAPSAAAPAASELKEVHVPDIGGDEVEVTEVMVNVGDTISEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVSTGSLIMVFEVAGSAPAPSASAPAPAASAPAASAIKDVNVPDIGGDEVEVTEVMVKVGDTIAEEQSLITVEGDKASMEVPAPFAGVVKEIKIAVGDKVKTGSLIMTFEVAGAAPAAQAPAAPAASTSAAPAPSAPAKAPASAPAAKEEFVENEAYVHATPVIRRLAREFGVNLAKVKGTGRKGRILREDVQSYVKELIKRAESAPANAGGGLPGMLPWPKVDFSKFGEIEEVELSRIQKISGANLSRNWVMIPHVNLFDEADITEVEEFRKQQNKEAEKKKLDVKITPLVFVMKAAAKALADMPRFNSSISEDGQKLILKKYINIGIAVDTPNGLVVPVFKDVNKKGILELSYELAEVSKKARAGKLTASDMQGGCFTISSLGGIGTTGFAPIVNAPEVAIMGLSRSSMKPVWNGKEFVPRLMLPMSLSFDHRVIDGADGARFITLINQYMSDLRRLVM
>CP026571.1|AVA40929.1|2799965_2802632_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSDMLKNDVDPIETRDWLQAIDSVIREEGVERAQFLIDQVLKQARNGGLDIALGGSVHSDYINTIPVEDEPAYPGNLELERRIRSAIRWNAVMMVLRASKKDLELGGHMASYQSSATLYEVCFNHFFRAHNDNDGGDLVYFQGHISPGIYARAFLEGRLTEEQLNNFRQEIGGKGLSSYPHPKLMPEFWQFPTVSMGLGPLSAIYQAKFLKYLDHRGLKDTTKQRVYAFLGDGEMDEPESKGAITIAVREKLDNLCFVVNCNLQRLDGPVTGNGKIVNELEGIFAGAGWNVIKVMWGDRWDALLRKDTSGKLIQLMNETLDGDYQTFKSRDGAYVREHFFNRYPETAALVKDMTDDEIWALNRGGHDPKKVFAAFQKAKETKDKPTVILAQTIKGYGMGETAEGKNIAHQVKKMNMDGVKHFRDRFNIPVSDEKVAELPYITFDKDSEEYKYLHARRQELEGYLPARRTRFDEKLEIPTLEDFSQLLEEQSKEISTTIAFVRALNVMLKNKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDVKGQILQEGINELGAGASWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFLIGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAFAYEVAVIMQDGLERMYGDKQENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLESLEGAKGKVQLLGSGSILRHVREAAQILSTEYGIGSDVYSVTSFTELARDGQDCERWNMLHPSEEPRVPYIAQIMNDAPAVASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDTSYVIVAALGELAKRGEIDVKVVEEAIKKYNINPEKVNPRLA
>CP026571.1|AVA42048.1|2802795_2803566_-|pyruvate-dehydrogenase-complex-transcriptional-repressor-PdhR
MAYTKIRQPKLSDVIEQQLEHLILEGTLRPGEKLLPERELAKQFDVSRPSLREAIQKLEAKGFLLRRQGGGTFVQDNLWQSFSDPLAQLLSGHPESQFDLLETRHALEGIAAYYAALRGTDDDLERIKASHARIIDAHDKGDIAAESDAVLQYQLIVTEAAHNVVLLHLLRCMVPMLEQNIRQNFEFLYTRKEMLTAVSEHRTQIYQAIINREPEAAREASHRHLAFIEDVLLDMSREHTRRERSLRRLQQHPDLF
>CP026571.1|AVA40930.1|2803892_2804435_-|1,6-anhydro-N-acetylmuramyl-L-alanine-amidase-AmpD
MEIKQGWLTGVKHVPSPNYDNRPEGEIPSLLIIHNISLPPGQFGGPYIDQLFTNTLVVDDHPFFNEIAHLRVSAHCLIRRDGEIVQYVPFTARAWHAGVSFYKGREKCNDFSIGIELEGTDECDFTSQQYQQLSTLTQQLIEHYPGIKENITGHSDVAPGRKTDPGPHFNWSYYRALLAK
>CP026571.1|AVA40931.1|2804645_2805089_+|prepilin-peptidase-dependent-pilin
MNTLNYHSTENGFTLMELMIVIAIISILSSVAIPAYHGYIQKAALTDVLQTLSPYRSAVELCHYEHQYNQCHADASFMPQQFRSRYLTDIHVANGVISAKGKAQLEGLTIVMTPATNSKETLPQWQINCTSTNTALQTLCHKVFKSH
>CP026571.1|AVA40932.1|2805187_2806291_+|GspE-family-protein
MNNTIHTATEFIEQLLRHSLAQRVSDLHLEPQQNSLRIRARIDNHLVLFSPPDNQLADEILTRLKILANINIAEKRLPQDGQFNWSYQKNNYSIRVATLPTLYGEKIVLRLMNNLQQPQLAQLGFQTIHLTLLKKYLTQPQGMILVTGPTGSGKTLTLYSCLQYLNKDNRNINSIEDPIELPLQGINQTQITEKAGITFATILRALLRQDPDVIMIGEIRDQQTAEIAIKAAQTGHLVLSTLHTNSTQATLARLANLGIAKDLIDSCVKLIISQRLVRCLCSNCKYPSPEQRNFIINNQQIILPNWQATGCQFCYSGYKGRTAIYDCFELAKQSLPSPYALFNSGIELIKKGITSLDEVYQVVGDIE
>CP026571.1|AVA40933.1|2806287_2807487_+|transporter
MKLHFIYRYNALTYQGKWLSGNVVAQSKHEVIDQLIQQQKLPVKIRLYRVIIFQNSDKQYRIQLLEQLALLLHSGLALLPALTLLKEECRYLHWQCVLNDIIFHLNQGGALSKQLSRYPLYFPANLTHFIYIGEESGKLDEVLLLQTTQLKNQRDLIKKIIKAFQYPLFLLLTLIVITISMLIYVLPEYQSLYSAFNTELPMLTLTLIRCSQWFSQYSLIILLFILIISYSYYTIKHHSAKFRDIEQRCWLNLPYLGILLRYHQLHIIFQIMTITQQAGLPLLQGLKIITEQLTHSLYQRALTDMIAHITQGKSLSSFMRHNPLFPPICYQFISSAENSGQLQFFCQQLTHWFYHQLEERLDSVKTWLEPILMTLIALITGTLIIAMYLPVLQLGDTIH
>CP026571.1|AVA40934.1|2807764_2808379_+|dephospho-CoA-kinase
MTYTVALTGGIGSGKTTIANGFASLGVPLVDADVIARLVVEPDSPGLKALQQHFGDTILLPDGKLNRAQLRHIIFQNQQEKAWVNQLLHPLIQQETQKQIQQIRAPYFIWVVPLLVENKLTHLADRILVVDVTEEEQITRTMQRDGVSLDHVLKILQAQAKREQRLAVADDIIENHDNSLNQDEQIKQLHQHYLELAQKSNTGQ
>CP026571.1|AVA40935.1|2808381_2809134_+|cell-division-protein-ZapD
MSEETSTIIFEHPLNEKMRSWLRIENSLIQLNSFQSINSLSSALSFFRAVSEFIEVLDRGEIRAELLKELEKRQKKLQQWLSFPNVDKEIVSHIINELSESACALSKAPRIGQHLKQDKIISLVKQRLSIPGGCCSFDVPTLHLWLNLPQTVRTEKLTCWQEGLYPLQNALNALLTLIRQSDTFKPVLSHNGFYQDSTEEGELLRIKLLASQQIYPQVSGHKNRYAIRFLPLDSEHGTIPSELPFEISCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026571_1	1.3\|784302\|30\|CP026571\|CRT	784302-784331	30	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1433063-1433092	6	0.8
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MT774377	CrAssphage cr107_1, complete genome	5371-5400	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	LN881734	Escherichia phage slur11, complete genome	140225-140254	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MN693991	Marine virus AFVG_250M861, complete genome	24194-24223	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MN692996	Marine virus AFVG_117M70, complete genome	24185-24214	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MT884006	Escherichia phage vb_EcoM_bov9_1, complete genome	150168-150197	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	LN881737	Escherichia phage slur13, complete genome	162047-162076	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MT884007	Escherichia phage vb_EcoM_bov10K1, complete genome	150169-150198	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MN694291	Marine virus AFVG_250M864, complete genome	14121-14150	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MN694083	Marine virus AFVG_250M863, complete genome	14129-14158	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	LN881726	Escherichia phage slur02, complete genome	54995-55024	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	KX828711	Shigella phage SH7, complete genome	148806-148835	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	MN694793	Marine virus AFVG_250M862, complete genome	24194-24223	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	NC_031085	Shigella phage SHBML-50-1, complete genome	152304-152333	7	0.767
CP026571_1	1.2\|784242\|30\|CP026571\|CRT	784242-784271	30	LN881729	Escherichia phage slur04, complete genome	136679-136708	7	0.767
CP026571_1	1.5\|784410\|30\|CP026571\|CRT	784410-784439	30	NC_009130	Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence	5690-5719	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	NC_031065	Salmonella phage vB_SnwM_CGG4-1, complete genome	112883-112912	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	HQ331142	Salmonella phage S16, complete genome	113069-113098	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	JX181825	Salmonella phage STML-198, complete genome	152759-152788	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	KJ000058	Salmonella phage STP4-a, complete genome	114359-114388	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	MN856100	Bacteriophage sp. isolate 2, complete genome	51547-51576	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	NC_042044	Salmonella phage Melville, complete genome	112024-112053	7	0.767
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	NC_023287	Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence	16483-16512	7	0.767
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MT774377	CrAssphage cr107_1, complete genome	5371-5400	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	LN881734	Escherichia phage slur11, complete genome	140225-140254	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MT884006	Escherichia phage vb_EcoM_bov9_1, complete genome	150168-150197	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	LN881737	Escherichia phage slur13, complete genome	162047-162076	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MT884007	Escherichia phage vb_EcoM_bov10K1, complete genome	150169-150198	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	LN881726	Escherichia phage slur02, complete genome	54995-55024	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	KX828711	Shigella phage SH7, complete genome	148806-148835	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	NC_031085	Shigella phage SHBML-50-1, complete genome	152304-152333	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	LN881729	Escherichia phage slur04, complete genome	136679-136708	8	0.733
CP026571_1	1.7\|784530\|30\|CP026571\|CRT	784530-784559	30	MW149107	Microvirus sp. isolate gila1, complete genome	4106-4135	8	0.733
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MN693991	Marine virus AFVG_250M861, complete genome	24194-24223	9	0.7
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MN692996	Marine virus AFVG_117M70, complete genome	24185-24214	9	0.7
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MN694793	Marine virus AFVG_250M862, complete genome	24194-24223	9	0.7
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MN694291	Marine virus AFVG_250M864, complete genome	14121-14150	9	0.7
CP026571_1	1.1\|784182\|30\|CP026571\|CRT	784182-784211	30	MN694083	Marine virus AFVG_250M863, complete genome	14129-14158	9	0.7
CP026571_1	1.3\|784302\|30\|CP026571\|CRT	784302-784331	30	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1211317-1211346	9	0.7
CP026571_1	1.3\|784302\|30\|CP026571\|CRT	784302-784331	30	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	433096-433125	9	0.7

1. spacer 1.3|784302|30|CP026571|CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ctttaatttctattctgaaaag--gatggagc	CRISPR spacer
ctttaagttttattctgaaaaggcgattca--	Protospacer
****** **.************  ***  *

2. spacer 1.2|784242|30|CP026571|CRT matches to MT774377 (CrAssphage cr107_1, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
atttaagttctatactgaaagagattataa	Protospacer
 ***** ****** *********** . *

3. spacer 1.2|784242|30|CP026571|CRT matches to LN881734 (Escherichia phage slur11, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

4. spacer 1.2|784242|30|CP026571|CRT matches to MN693991 (Marine virus AFVG_250M861, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *..**

5. spacer 1.2|784242|30|CP026571|CRT matches to MN692996 (Marine virus AFVG_117M70, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *..**

6. spacer 1.2|784242|30|CP026571|CRT matches to MT884006 (Escherichia phage vb_EcoM_bov9_1, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

7. spacer 1.2|784242|30|CP026571|CRT matches to LN881737 (Escherichia phage slur13, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

8. spacer 1.2|784242|30|CP026571|CRT matches to MT884007 (Escherichia phage vb_EcoM_bov10K1, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

9. spacer 1.2|784242|30|CP026571|CRT matches to MN694291 (Marine virus AFVG_250M864, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *..**

10. spacer 1.2|784242|30|CP026571|CRT matches to MN694083 (Marine virus AFVG_250M863, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *..**

11. spacer 1.2|784242|30|CP026571|CRT matches to LN881726 (Escherichia phage slur02, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

12. spacer 1.2|784242|30|CP026571|CRT matches to KX828711 (Shigella phage SH7, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

13. spacer 1.2|784242|30|CP026571|CRT matches to MN694793 (Marine virus AFVG_250M862, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *..**

14. spacer 1.2|784242|30|CP026571|CRT matches to NC_031085 (Shigella phage SHBML-50-1, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

15. spacer 1.2|784242|30|CP026571|CRT matches to LN881729 (Escherichia phage slur04, complete genome) position: , mismatch: 7, identity: 0.767

ctttaatttctattctgaaagagatagaac	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . *

16. spacer 1.5|784410|30|CP026571|CRT matches to NC_009130 (Staphylococcus sp. 693-2 plasmid pLEW6932, complete sequence) position: , mismatch: 7, identity: 0.767

atttaatttctcttctgaaagagatagaac	CRISPR spacer
ttttaatttttcttctgaaaaagagaatat	Protospacer
 ********.**********.*** *. *.

17. spacer 1.7|784530|30|CP026571|CRT matches to NC_031065 (Salmonella phage vB_SnwM_CGG4-1, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
gtttaattcttcttctggaagagatttcaa	Protospacer
 ********.*******.*******   *

18. spacer 1.7|784530|30|CP026571|CRT matches to HQ331142 (Salmonella phage S16, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
gtttaattcttcttctggaagagattttaa	Protospacer
 ********.*******.*******   *

19. spacer 1.7|784530|30|CP026571|CRT matches to JX181825 (Salmonella phage STML-198, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
gtttaattcttcttctggaagagattttaa	Protospacer
 ********.*******.*******   *

20. spacer 1.7|784530|30|CP026571|CRT matches to KJ000058 (Salmonella phage STP4-a, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
gtttaattcttcttctggaagagattttaa	Protospacer
 ********.*******.*******   *

21. spacer 1.7|784530|30|CP026571|CRT matches to MN856100 (Bacteriophage sp. isolate 2, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
ccttaattcctcttctgaatgagttacgtt	Protospacer
*.***************** *** ** . .

22. spacer 1.7|784530|30|CP026571|CRT matches to NC_042044 (Salmonella phage Melville, complete genome) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
gtttaattcttcttctggaagagattttaa	Protospacer
 ********.*******.*******   *

23. spacer 1.7|784530|30|CP026571|CRT matches to NC_023287 (Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence) position: , mismatch: 7, identity: 0.767

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
ctttaattcatcttctgtaagagcagatac	Protospacer
********* ******* *****  .. **

24. spacer 1.1|784182|30|CP026571|CRT matches to MT774377 (CrAssphage cr107_1, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
atttaagttctatactgaaagagattataa	Protospacer
 ***** ****** *********** . .

25. spacer 1.1|784182|30|CP026571|CRT matches to LN881734 (Escherichia phage slur11, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

26. spacer 1.1|784182|30|CP026571|CRT matches to MT884006 (Escherichia phage vb_EcoM_bov9_1, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

27. spacer 1.1|784182|30|CP026571|CRT matches to LN881737 (Escherichia phage slur13, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

28. spacer 1.1|784182|30|CP026571|CRT matches to MT884007 (Escherichia phage vb_EcoM_bov10K1, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

29. spacer 1.1|784182|30|CP026571|CRT matches to LN881726 (Escherichia phage slur02, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

30. spacer 1.1|784182|30|CP026571|CRT matches to KX828711 (Shigella phage SH7, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

31. spacer 1.1|784182|30|CP026571|CRT matches to NC_031085 (Shigella phage SHBML-50-1, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

32. spacer 1.1|784182|30|CP026571|CRT matches to LN881729 (Escherichia phage slur04, complete genome) position: , mismatch: 8, identity: 0.733

ctttaatttctattctgaaagagatagagt	CRISPR spacer
cactcatttctattctcaaagagatacgtc	Protospacer
* .* *********** ********* . .

33. spacer 1.7|784530|30|CP026571|CRT matches to MW149107 (Microvirus sp. isolate gila1, complete genome) position: , mismatch: 8, identity: 0.733

ctttaattcctcttctgaaagagatagaac	CRISPR spacer
tattaattcttcttctgaaagaaatcttaa	Protospacer
. *******.************.**   *

34. spacer 1.1|784182|30|CP026571|CRT matches to MN693991 (Marine virus AFVG_250M861, complete genome) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaagagatagagt	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *....

35. spacer 1.1|784182|30|CP026571|CRT matches to MN692996 (Marine virus AFVG_117M70, complete genome) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaagagatagagt	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *....

36. spacer 1.1|784182|30|CP026571|CRT matches to MN694793 (Marine virus AFVG_250M862, complete genome) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaagagatagagt	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *....

37. spacer 1.1|784182|30|CP026571|CRT matches to MN694291 (Marine virus AFVG_250M864, complete genome) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaagagatagagt	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *....

38. spacer 1.1|784182|30|CP026571|CRT matches to MN694083 (Marine virus AFVG_250M863, complete genome) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaagagatagagt	CRISPR spacer
agttcatttctattctgaaagagcaaagac	Protospacer
  ** ******************  *....

39. spacer 1.3|784302|30|CP026571|CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaaaggatggagc	CRISPR spacer
atttaatttctattttgaaaagccatagcc	Protospacer
 *************.*******    .. *

40. spacer 1.3|784302|30|CP026571|CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.7

ctttaatttctattctgaaaaggatggagc	CRISPR spacer
atttaatttctattttgaaaagccatagcc	Protospacer
 *************.*******    .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

691736 : 736296

uncultured_Mediterranean_phage(23.08%)

protease,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA39076.1\|691736_692810_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
AVA39077.1\|692990_694133_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.2e-93	47.2
AVA39078.1\|694219_694555_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	2.9e-10	33.0
AVA39079.1\|694587_696435_+	protein translocase subunit SecD	NA	NA	NA	NA
AVA39080.1\|696445_697414_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.0e-48	41.1
AVA39081.1\|697532_697982_+	transcriptional regulator NrdR	NA	NA	NA	NA
AVA39082.1\|698030_699188_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	2.3e-51	35.8
AVA39083.1\|699400_699871_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.6e-30	49.7
AVA39084.1\|699899_700313_+	N utilization substance protein B	NA	NA	NA	NA
AVA39085.1\|700406_701387_+	thiamine-phosphate kinase	NA	NA	NA	NA
AVA39086.1\|701472_701808_-	hypothetical protein	NA	NA	NA	NA
AVA39087.1\|702280_702697_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.9e-44	61.3
AVA39088.1\|702719_703928_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	1.1e-189	81.5
AVA39089.1\|703950_704952_-	transcriptional regulator RbsR	NA	NA	NA	NA
AVA39090.1\|704965_705892_-	ribokinase	NA	NA	NA	NA
AVA39091.1\|705969_706860_-	ribose ABC transporter substrate-binding protein RbsB	NA	NA	NA	NA
AVA39092.1\|706899_707865_-	ribose ABC transporter permease	NA	NA	NA	NA
AVA39093.1\|707866_709375_-	ribose ABC transporter ATP-binding protein RbsA	A0A2H4PQG7	Staphylococcus_phage	2.7e-15	25.7
AVA39094.1\|709382_709802_-	D-ribose pyranase	NA	NA	NA	NA
AVA39095.1\|710142_712017_-	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
AVA39096.1\|712083_713007_-	(2E,6E)-farnesyl diphosphate synthase	NA	NA	NA	NA
AVA41994.1\|713007_713271_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
AVA39097.1\|713470_714922_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
AVA39098.1\|715227_715650_-	hypothetical protein	NA	NA	NA	NA
AVA39099.1\|716116_716734_-	protein deglycase YajL	NA	NA	NA	NA
AVA39100.1\|716702_717626_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
AVA41995.1\|717879_718371_+	YajQ family cyclic di-GMP-binding protein	NA	NA	NA	NA
AVA39101.1\|718434_719805_-	MFS transporter	NA	NA	NA	NA
AVA39102.1\|719978_720863_-	protoheme IX farnesyltransferase	NA	NA	NA	NA
AVA39103.1\|720874_721207_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
AVA39104.1\|721206_721818_-	cytochrome o ubiquinol oxidase subunit III	NA	NA	NA	NA
AVA39105.1\|721817_723800_-	cytochrome o ubiquinol oxidase subunit I	NA	NA	NA	NA
AVA39106.1\|723804_724755_-	cytochrome o ubiquinol oxidase subunit II	NA	NA	NA	NA
AVA39107.1\|725251_726013_-	hypothetical protein	NA	NA	NA	NA
AVA39108.1\|726369_727743_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.3e-61	35.7
AVA39109.1\|727842_729363_-	muropeptide transporter AmpG	NA	NA	NA	NA
AVA39110.1\|729421_730000_-	hypothetical protein	NA	NA	NA	NA
AVA39111.1\|730194_730611_-\|transposase	IS200/IS605 family transposase	A0A1S5RHE3	Helicobacter_phage	2.6e-45	62.0
AVA41996.1\|730633_731842_+\|transposase	transposase	A0A1B0VCD8	Salmonella_phage	5.2e-187	81.2
AVA39112.1\|732058_732373_+	BolA family transcriptional regulator	NA	NA	NA	NA
AVA39113.1\|732695_734000_+	trigger factor	NA	NA	NA	NA
AVA39114.1\|734256_734880_+\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	2.9e-64	64.1
AVA39115.1\|735024_736296_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	7.3e-131	56.8

DBSCAN-SWA_2

1071983 : 1083337

Mycobacterium_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA39380.1\|1071983_1073183_-	proline/glycine betaine ABC transporter ATP-binding protein ProV	G3M9Y6	Bacillus_virus	3.8e-28	37.6
AVA39381.1\|1073792_1074761_-	class 1b ribonucleoside-diphosphate reductase subunit beta	R4TBI6	Mycobacterium_phage	3.5e-133	71.0
AVA39382.1\|1074786_1076913_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.2e-205	51.3
AVA39383.1\|1076941_1077346_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	R4JF54	Bacillus_phage	6.3e-12	38.5
AVA39384.1\|1077357_1077582_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.4e-13	47.9
AVA39385.1\|1077863_1078337_+	cysteine methyltransferase	NA	NA	NA	NA
AVA39386.1\|1078501_1078744_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	6.9e-22	70.0
AVA39387.1\|1079200_1079575_-	fluoride efflux transporter CrcB	A0A2H4J148	uncultured_Caudovirales_phage	2.7e-25	52.0
AVA39388.1\|1079590_1080556_-	lipoyl synthase	NA	NA	NA	NA
AVA39389.1\|1080657_1081302_-	lipoyl(octanoyl) transferase LipB	NA	NA	NA	NA
AVA42002.1\|1081663_1081927_-	hypothetical protein	NA	NA	NA	NA
AVA39390.1\|1082125_1083337_-	serine-type D-Ala-D-Ala carboxypeptidase	B6DZZ7	Stx2-converting_phage	8.6e-105	49.1

DBSCAN-SWA_3

1392986 : 1430708

Pectobacterium_phage(21.62%)

portal,head,terminase,tRNA,holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA39647.1\|1392986_1394162_-	recombinase	A0A2H4J1K3	uncultured_Caudovirales_phage	2.7e-31	30.1
AVA39648.1\|1394163_1394376_-	hypothetical protein	NA	NA	NA	NA
AVA39649.1\|1394350_1394548_-	hypothetical protein	NA	NA	NA	NA
AVA39650.1\|1394988_1395168_-	hypothetical protein	NA	NA	NA	NA
AVA39651.1\|1395215_1395716_-	hypothetical protein	H9C156	Pectobacterium_phage	1.2e-39	55.2
AVA39652.1\|1395715_1397683_-	hypothetical protein	H9C157	Pectobacterium_phage	8.4e-118	39.4
AVA39653.1\|1397695_1397956_-	hypothetical protein	A0A1B1W282	Salmonella_phage	7.9e-08	45.3
AVA39654.1\|1397955_1398288_-	hypothetical protein	H9C158	Pectobacterium_phage	4.7e-05	38.1
AVA39655.1\|1398744_1399503_-	XRE family transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	1.5e-27	39.0
AVA39656.1\|1399607_1399865_+	XRE family transcriptional regulator	NA	NA	NA	NA
AVA39657.1\|1399905_1400361_+\|tRNA	tRNA-(guanine-N1)-methyltransferase	H9C162	Pectobacterium_phage	9.9e-30	55.4
AVA39658.1\|1400378_1400603_+	hypothetical protein	H9C163	Pectobacterium_phage	9.5e-18	55.4
AVA39659.1\|1400604_1401435_+	replication protein	H9C164	Pectobacterium_phage	4.4e-36	59.3
AVA39660.1\|1401424_1402843_+	helicase DnaB	H9C165	Pectobacterium_phage	6.8e-170	60.8
AVA39661.1\|1402897_1403074_+	palmdelphin	NA	NA	NA	NA
AVA39662.1\|1403076_1403310_+	hypothetical protein	NA	NA	NA	NA
AVA39663.1\|1403313_1403655_+	hypothetical protein	H9C172	Pectobacterium_phage	2.1e-24	51.4
AVA39664.1\|1403685_1404588_+	hypothetical protein	NA	NA	NA	NA
AVA39665.1\|1404701_1405295_+	DUF1367 domain-containing protein	K7PKS6	Enterobacteria_phage	1.5e-57	54.7
AVA39666.1\|1405306_1405618_+	DUF968 domain-containing protein	A0A1I9KFA7	Aeromonas_phage	1.0e-33	68.8
AVA39667.1\|1405652_1406201_+	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	6.3e-31	44.9
AVA39668.1\|1406316_1406649_+	hypothetical protein	NA	NA	NA	NA
AVA39669.1\|1406783_1406981_+	TrmB family transcriptional regulator	Q9MC00	Enterobacteria_phage	1.1e-09	65.4
AVA42010.1\|1407135_1408170_+	DNA adenine methylase	A0A1W6JP25	Morganella_phage	3.7e-141	70.8
AVA39670.1\|1408483_1409053_+	hypothetical protein	NA	NA	NA	NA
AVA42012.1\|1409344_1409650_+\|holin	holin	F1C5D1	Cronobacter_phage	5.1e-22	52.4
AVA42011.1\|1409681_1410035_+	peptidase M15	A0A1P8DTE2	Proteus_phage	6.7e-42	79.8
AVA39671.1\|1410040_1410487_+\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.4e-12	33.1
AVA39672.1\|1410826_1411849_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	3.2e-36	39.8
AVA39673.1\|1411970_1412447_+	hypothetical protein	NA	NA	NA	NA
AVA39674.1\|1412729_1414127_+\|terminase	terminase	A0A2K9V3I6	Faecalibacterium_phage	3.3e-84	40.3
AVA39675.1\|1414131_1415634_+\|portal	portal protein	A0A2H4P6S9	Pseudomonas_phage	1.1e-101	42.7
AVA42013.1\|1415671_1416385_+\|head	phage head morphogenesis protein	A0A2H5BG15	Pseudoalteromonas_phage	2.0e-32	34.8
AVA39676.1\|1416381_1417641_+	hypothetical protein	Q6IWU4	Burkholderia_phage	1.6e-45	51.3
AVA39677.1\|1417640_1418138_+	hypothetical protein	NA	NA	NA	NA
AVA39678.1\|1418137_1419205_+	DUF2184 domain-containing protein	A0A088C493	Shewanella_sp._phage	1.1e-52	39.3
AVA39679.1\|1419274_1419616_+	hypothetical protein	Q6IWU7	Burkholderia_phage	2.7e-08	33.6
AVA39680.1\|1419618_1420050_+	DUF4054 domain-containing protein	Q6IWU8	Burkholderia_phage	2.0e-11	31.7
AVA39681.1\|1420049_1420508_+	hypothetical protein	Q6IWU9	Burkholderia_phage	3.2e-12	37.6
AVA39682.1\|1420507_1420879_+	hypothetical protein	NA	NA	NA	NA
AVA39683.1\|1420865_1421381_+	hypothetical protein	NA	NA	NA	NA
AVA39684.1\|1421389_1422877_+	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	2.5e-82	37.7
AVA39685.1\|1422887_1423340_+	hypothetical protein	I7ATP4	Escherichia_phage	5.8e-22	38.1
AVA39686.1\|1423380_1423839_+	hypothetical protein	Q6IWV4	Burkholderia_phage	6.7e-26	48.5
AVA39687.1\|1423922_1426217_+	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	8.8e-18	27.5
AVA39688.1\|1426213_1426741_+	hypothetical protein	NA	NA	NA	NA
AVA39689.1\|1426740_1427058_+	hypothetical protein	Q6IWP9	Burkholderia_phage	3.3e-08	32.3
AVA39690.1\|1427023_1427839_+	hypothetical protein	A1Z005	Burkholderia_virus	1.8e-10	26.0
AVA39691.1\|1427841_1428534_+	hypothetical protein	A1Z003	Burkholderia_virus	9.1e-35	39.4
AVA39692.1\|1428530_1428875_+	hypothetical protein	NA	NA	NA	NA
AVA39693.1\|1428867_1430055_+	hypothetical protein	Q6IWQ3	Burkholderia_phage	3.0e-70	40.9
AVA39694.1\|1430051_1430708_+	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	1.3e-38	40.9

DBSCAN-SWA_4

1509574 : 1547037

Morganella_phage(25.81%)

portal,head,capsid,tail,integrase,tRNA,terminase,protease,lysis

attL 1513086:1513145|attR 1555009:1555219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA39763.1\|1509574_1510678_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVA39764.1\|1510783_1511236_-	NUDIX hydrolase	NA	NA	NA	NA
AVA39765.1\|1511228_1511858_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AVA39766.1\|1511996_1513250_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.8e-20	90.7
1513086:1513145	attL	NA	NA	NA	NA
AVA39767.1\|1513359_1514493_-\|integrase	integrase	Q77Z04	Phage_21	1.4e-154	72.2
AVA39768.1\|1514467_1514719_-	excisionase	NA	NA	NA	NA
AVA39769.1\|1514804_1515329_-	hypothetical protein	A0A1W6JP41	Morganella_phage	2.3e-54	61.0
AVA39770.1\|1515850_1516282_-	hypothetical protein	NA	NA	NA	NA
AVA39771.1\|1516271_1518146_-	helicase	A0A2I5ARD8	Synechococcus_phage	5.4e-13	26.7
AVA39772.1\|1518242_1518899_-	helix-turn-helix domain-containing protein	A0A1W6JNY2	Morganella_phage	1.3e-86	73.5
AVA39773.1\|1518994_1519222_+	helix-turn-helix domain-containing protein	A0A1C9IHV8	Salmonella_phage	7.9e-12	50.0
AVA39774.1\|1519260_1519737_+	hypothetical protein	A0A1W6JP72	Morganella_phage	1.8e-45	60.4
AVA39775.1\|1519799_1520009_+	hypothetical protein	NA	NA	NA	NA
AVA39776.1\|1519998_1520178_+	DUF4222 domain-containing protein	A0A1W6JP38	Morganella_phage	3.4e-10	55.2
AVA42016.1\|1520735_1521251_+	hypothetical protein	U5P0A0	Shigella_phage	3.5e-23	44.2
AVA39777.1\|1521272_1522079_+	DNA-binding protein	A0A1W6JP13	Morganella_phage	4.0e-90	62.1
AVA39778.1\|1522075_1523101_+	hypothetical protein	A0A1W6JP62	Morganella_phage	6.4e-85	47.1
AVA39779.1\|1523128_1523527_+	antitermination protein	Q8W638	Enterobacteria_phage	1.6e-31	53.5
AVA39780.1\|1523867_1524080_+	RNA chaperone/antiterminator CspA	A0A1W6JNX5	Morganella_phage	3.1e-26	81.4
AVA39781.1\|1524411_1524870_+	heat-shock protein	NA	NA	NA	NA
AVA39782.1\|1525482_1527036_+	hypothetical protein	A0A1S5SA14	Streptococcus_phage	2.4e-19	26.4
AVA42017.1\|1527122_1528157_+	hypothetical protein	NA	NA	NA	NA
AVA39783.1\|1528637_1529060_+	hypothetical protein	NA	NA	NA	NA
AVA39784.1\|1529125_1529395_+	hypothetical protein	A0A2H4FNF0	Salmonella_phage	2.7e-19	53.5
AVA39785.1\|1529394_1529865_+	lysozyme	A0A1W6JNW4	Morganella_phage	8.9e-50	61.8
AVA39786.1\|1530007_1530469_+\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	4.8e-24	47.2
AVA39787.1\|1530741_1530945_-	KTSC domain-containing protein	NA	NA	NA	NA
AVA39788.1\|1531771_1532284_+	hypothetical protein	A0A1V0E5P7	Salmonella_phage	1.9e-58	65.7
AVA39789.1\|1532365_1532773_+	hypothetical protein	NA	NA	NA	NA
AVA39790.1\|1532769_1533108_+	HNH endonuclease	F1C587	Cronobacter_phage	8.3e-42	68.8
AVA39791.1\|1533225_1533693_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	1.6e-43	59.7
AVA39792.1\|1533646_1535380_+\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	3.1e-148	46.6
AVA39793.1\|1535379_1536648_+\|portal	phage portal protein	Q77W97	Enterobacteria_phage	1.8e-201	80.4
AVA39794.1\|1536665_1537334_+\|head,protease	HK97 family phage prohead protease	K7PM91	Enterobacterial_phage	6.6e-83	65.8
AVA39795.1\|1537337_1538504_+\|capsid	phage major capsid protein	F1C582	Cronobacter_phage	1.6e-169	79.5
AVA39796.1\|1538542_1538842_+	hypothetical protein	K7PKV5	Enterobacterial_phage	5.7e-34	65.3
AVA39797.1\|1538841_1539171_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
AVA39798.1\|1539160_1539634_+	hypothetical protein	A0A0R6PHU8	Moraxella_phage	8.2e-11	30.2
AVA39799.1\|1539639_1539981_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AVA39800.1\|1539990_1540656_+	hypothetical protein	NA	NA	NA	NA
AVA39801.1\|1540720_1541137_+	hypothetical protein	NA	NA	NA	NA
AVA39802.1\|1541133_1541412_+	DUF4035 domain-containing protein	NA	NA	NA	NA
AVA39803.1\|1541436_1541628_-	YqaE/Pmp3 family membrane protein	NA	NA	NA	NA
AVA39804.1\|1541754_1545030_+\|tail	phage tail tape measure protein	B7SE05	Pseudomonas_virus	2.9e-54	46.7
AVA39805.1\|1545030_1545627_+	hypothetical protein	S4TSP7	Salmonella_phage	1.6e-51	52.3
AVA39806.1\|1545626_1546208_+	hypothetical protein	Q7Y3Z7	Yersinia_phage	8.1e-53	50.5
AVA39807.1\|1546224_1546560_+	hypothetical protein	Q775B6	Bordetella_phage	3.7e-10	35.3
AVA39808.1\|1546638_1547037_+	hypothetical protein	A0A059VK01	Pseudomonas_phage	7.1e-32	46.2
1555009:1555219	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1811749 : 1821741

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40028.1\|1811749_1813807_-	K(+)-transporting ATPase subunit B	E4ZFI9	Streptococcus_phage	2.2e-31	26.1
AVA40029.1\|1813818_1815519_-	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
AVA40030.1\|1815521_1815605_-	potassium-transporting ATPase subunit F	NA	NA	NA	NA
AVA40031.1\|1815854_1816541_+	ankyrin repeat domain-containing protein	NA	NA	NA	NA
AVA40032.1\|1816540_1817002_+	nucleoside deaminase	S4VYZ2	Pandoravirus	7.0e-15	34.6
AVA40033.1\|1817054_1817666_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	5.6e-28	39.1
AVA40034.1\|1817805_1818666_-	dimethylsulfoxide reductase	A0A077SK59	Escherichia_phage	3.7e-25	35.5
AVA40035.1\|1818667_1819285_-	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	2.2e-72	58.6
AVA40036.1\|1819296_1821741_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.6e-220	50.4

DBSCAN-SWA_6

2156320 : 2165148

Salmonella_phage(25.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40344.1\|2156320_2157373_-	nucleotidyltransferase	A0A067XQU1	Caulobacter_phage	1.2e-06	22.8
AVA40345.1\|2157356_2158136_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	1.1e-31	39.3
AVA40346.1\|2158514_2159009_-	hypothetical protein	NA	NA	NA	NA
AVA40347.1\|2159008_2159353_-	hypothetical protein	F1BUL3	Cronobacter_phage	2.6e-43	84.3
AVA40348.1\|2159355_2159628_-\|holin	phage holin family protein	T1SA10	Salmonella_phage	3.2e-12	37.8
AVA40349.1\|2159624_2159996_-	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-16	39.1
AVA40350.1\|2160082_2161537_-	hypothetical protein	NA	NA	NA	NA
AVA40351.1\|2161523_2162453_-	glycosyltransferase	M1FQW5	Enterobacteria_phage	1.2e-146	83.0
AVA40352.1\|2162452_2162815_-	translocase	S5FXN2	Shigella_phage	4.0e-26	53.8
AVA40353.1\|2162955_2165148_-	hypothetical protein	A0A2P0QGN7	Salmonella_phage	1.9e-126	48.6

DBSCAN-SWA_7

2169288 : 2201299

Escherichia_coli_O157_typing_phage(21.43%)

terminase,integrase,tail

attL 2184862:2184877|attR 2207066:2207081

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40357.1\|2169288_2172372_-	hypothetical protein	T1SBJ1	Salmonella_phage	1.9e-164	51.1
AVA40358.1\|2172374_2172923_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	1.2e-45	60.2
AVA40359.1\|2172922_2173411_-	hypothetical protein	A0A0F6R7N6	Escherichia_coli_O157_typing_phage	2.7e-49	59.9
AVA40360.1\|2173394_2175857_-	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	0.0e+00	70.1
AVA40361.1\|2175856_2176462_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	6.7e-66	60.7
AVA40362.1\|2176461_2176773_-	hypothetical protein	Q858G5	Salmonella_phage	8.8e-14	38.5
AVA40363.1\|2176836_2177178_-	hypothetical protein	NA	NA	NA	NA
AVA40364.1\|2177186_2177618_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	2.5e-30	54.8
AVA40365.1\|2177676_2178657_-	hypothetical protein	G9L6C5	Escherichia_phage	6.5e-111	59.4
AVA40366.1\|2178672_2179350_-	peptidase	T1SAP9	Salmonella_phage	4.0e-43	64.3
AVA40367.1\|2179379_2179694_-	hypothetical protein	Q2A090	Sodalis_phage	6.8e-14	45.5
AVA40368.1\|2179690_2181355_-\|tail	phage tail protein	G9L6C2	Escherichia_phage	3.7e-199	65.2
AVA40369.1\|2181364_2181577_-	hypothetical protein	NA	NA	NA	NA
AVA40370.1\|2181761_2183243_-\|terminase	terminase	G9L6B8	Escherichia_phage	3.4e-228	76.7
AVA40371.1\|2183242_2183812_-\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	2.0e-43	48.1
AVA40372.1\|2183857_2184505_-	hypothetical protein	NA	NA	NA	NA
AVA40373.1\|2184533_2184875_-	hypothetical protein	H9C172	Pectobacterium_phage	4.8e-29	57.1
2184862:2184877	attL	NA	NA	NA	NA
AVA40374.1\|2184934_2185285_-	hypothetical protein	NA	NA	NA	NA
AVA40375.1\|2185404_2185800_-	RusA family crossover junction endodeoxyribonuclease	G8C7V6	Escherichia_phage	2.0e-34	60.0
AVA40376.1\|2185796_2186210_-	hypothetical protein	NA	NA	NA	NA
AVA40377.1\|2186456_2187182_-	DNA replication protein DnaC	A0A1W6JP39	Morganella_phage	6.7e-105	78.8
AVA40378.1\|2187181_2188024_-	hypothetical protein	A0A0D4DBT2	Acinetobacter_phage	3.8e-51	59.7
AVA40379.1\|2188034_2188220_-	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	6.0e-10	50.8
AVA40380.1\|2188359_2188638_-	hypothetical protein	NA	NA	NA	NA
AVA40381.1\|2188714_2189323_+	DNA-binding protein	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	1.5e-28	35.4
AVA40382.1\|2189719_2191444_+	DNA breaking-rejoining protein	A0A0U2I1R6	Escherichia_phage	1.2e-112	47.6
AVA40383.1\|2191489_2192530_+	enterohemolysin	H6WRX0	Salmonella_phage	3.5e-99	50.4
AVA40384.1\|2192573_2192831_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AVA40385.1\|2192884_2193079_+	hypothetical protein	NA	NA	NA	NA
AVA40386.1\|2193115_2193400_+	hypothetical protein	A0A1P8DTG9	Proteus_phage	2.0e-44	90.4
AVA40387.1\|2193399_2193894_+	hypothetical protein	A0A077KCB2	Edwardsiella_phage	2.9e-11	26.4
AVA40388.1\|2193893_2194427_+	hypothetical protein	NA	NA	NA	NA
AVA40389.1\|2194496_2195213_+	hypothetical protein	NA	NA	NA	NA
AVA40390.1\|2195247_2195721_+	class I SAM-dependent methyltransferase	A0A1W6JP48	Morganella_phage	1.2e-70	78.7
AVA40391.1\|2195717_2196359_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	8.6e-72	60.6
AVA40392.1\|2196361_2196559_+	hypothetical protein	A0A1P8DTH3	Proteus_phage	3.4e-19	65.1
AVA40393.1\|2196558_2196747_+	hypothetical protein	NA	NA	NA	NA
AVA40394.1\|2196754_2197951_-\|integrase	integrase	T1S9J3	Salmonella_phage	3.1e-139	61.4
AVA40395.1\|2198170_2199748_-	GMP synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
AVA40396.1\|2199832_2201299_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	4.7e-89	38.7
2207066:2207081	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2384523 : 2403412

Escherichia_phage(21.43%)

holin,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40553.1\|2384523_2386962_+	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.0e-261	54.5
AVA40554.1\|2386973_2387591_+	dimethylsulfoxide reductase, chain B	A0A077SL61	Escherichia_phage	1.3e-88	67.8
AVA40555.1\|2387594_2388371_+	diguanylate cyclase	A0A077SK59	Escherichia_phage	5.1e-42	39.8
AVA40556.1\|2388486_2389029_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	2.7e-18	34.2
AVA40557.1\|2389597_2389777_+	GhoT/OrtT family toxin	NA	NA	NA	NA
AVA40558.1\|2391176_2391833_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.3e-35	39.9
AVA40559.1\|2391829_2393017_-	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	1.3e-73	37.9
AVA40560.1\|2393009_2393354_-	hypothetical protein	NA	NA	NA	NA
AVA40561.1\|2393350_2394043_-	hypothetical protein	A1Z003	Burkholderia_virus	1.6e-34	37.1
AVA40562.1\|2394045_2394858_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	9.0e-42	39.2
AVA40563.1\|2394826_2395147_-	hypothetical protein	NA	NA	NA	NA
AVA40564.1\|2395159_2395648_-	hypothetical protein	NA	NA	NA	NA
AVA40565.1\|2395650_2397954_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.1e-15	23.3
AVA40566.1\|2398036_2398495_-	hypothetical protein	Q6IWV4	Burkholderia_phage	1.9e-25	48.5
AVA40567.1\|2398554_2399007_-	hypothetical protein	NA	NA	NA	NA
AVA40568.1\|2399017_2400505_-	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	4.2e-77	35.7
AVA40569.1\|2400513_2401026_-	hypothetical protein	NA	NA	NA	NA
AVA40570.1\|2401062_2401512_-\|lysis	lysis protein	NA	NA	NA	NA
AVA40571.1\|2401508_2401913_-	structural protein	A0A0E3JJ20	Enterobacteria_phage	3.8e-25	45.8
AVA40572.1\|2401915_2402215_-\|holin	phage holin, lambda family	A0A1P8DTE4	Proteus_phage	1.9e-21	51.0
AVA40573.1\|2402596_2403412_-	antitermination protein	M9NZB0	Enterobacteria_phage	3.5e-54	43.4

DBSCAN-SWA_9

2592505 : 2674189

101

Yersinia_phage(13.33%)

portal,head,capsid,tail,transposase,protease,tRNA,terminase,integrase,lysis

attL 2614621:2614636|attR 2662912:2662927

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40726.1\|2592505_2593036_-\|tRNA	tRNA adenosine(34) deaminase TadA	S4VYT2	Pandoravirus	1.4e-06	31.5
AVA40727.1\|2593348_2593609_+	4Fe-4S dicluster domain-containing protein	A0A1B1IWY9	uncultured_Mediterranean_phage	4.6e-16	47.7
AVA40728.1\|2593638_2594019_-	holo-ACP synthase	NA	NA	NA	NA
AVA40729.1\|2594018_2594750_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
AVA40730.1\|2594819_2595560_-	DNA repair protein RecO	NA	NA	NA	NA
AVA40731.1\|2595572_2596481_-	GTPase Era	NA	NA	NA	NA
AVA40732.1\|2596477_2597158_-	ribonuclease 3	A0A0P0BX11	Ostreococcus_lucimarinus_virus	8.1e-20	31.9
AVA40733.1\|2597353_2598325_-	signal peptidase I	NA	NA	NA	NA
AVA40734.1\|2598339_2600136_-	elongation factor 4	A0A2K9L2P9	Tupanvirus	2.7e-22	41.2
AVA40735.1\|2600457_2600922_-	SoxR reducing system protein RseC	NA	NA	NA	NA
AVA40736.1\|2600934_2601906_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
AVA40737.1\|2601954_2602614_-	anti-sigma-E factor RseA	NA	NA	NA	NA
AVA40738.1\|2602615_2603194_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
AVA40739.1\|2603494_2604253_-\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
AVA40740.1\|2604521_2605877_+	ATP-dependent RNA helicase SrmB	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.3e-42	28.1
AVA40741.1\|2606027_2606411_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	2.0e-31	67.0
AVA40742.1\|2606422_2606647_+	hypothetical protein	NA	NA	NA	NA
AVA42038.1\|2606745_2607426_+	uracil-DNA glycosylase	A0A076JX67	Equid_alphaherpesvirus	1.7e-57	47.2
AVA40743.1\|2607517_2608129_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVA40744.1\|2608230_2609130_+	NAD(+) kinase	NA	NA	NA	NA
AVA40745.1\|2609215_2610877_+	DNA repair protein RecN	NA	NA	NA	NA
AVA40746.1\|2610990_2611353_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVA40747.1\|2611485_2611779_-	RnfH family protein	NA	NA	NA	NA
AVA40748.1\|2611771_2612206_-	ubiquinone-binding protein	NA	NA	NA	NA
AVA40749.1\|2612362_2612845_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	4.3e-31	49.4
AVA40750.1\|2613631_2614006_+	hypothetical protein	NA	NA	NA	NA
AVA40751.1\|2614396_2614702_+	XRE family transcriptional regulator	NA	NA	NA	NA
2614621:2614636	attL	NA	NA	NA	NA
AVA40752.1\|2616362_2616629_-	hypothetical protein	NA	NA	NA	NA
AVA40753.1\|2616625_2617312_-	hypothetical protein	NA	NA	NA	NA
AVA40754.1\|2617311_2617644_-	hypothetical protein	NA	NA	NA	NA
AVA40755.1\|2617633_2620423_-\|tail	phage tail protein	Q7Y3Z3	Yersinia_phage	9.3e-187	48.0
AVA40756.1\|2620423_2620822_-	hypothetical protein	A0A2H4IYI8	uncultured_Caudovirales_phage	8.3e-33	47.7
AVA40757.1\|2620875_2621151_-	hypothetical protein	NA	NA	NA	NA
AVA40758.1\|2621164_2621746_-	hypothetical protein	Q7Y3Z7	Yersinia_phage	1.9e-49	50.0
AVA40759.1\|2621742_2622342_-	hypothetical protein	S4TSP7	Salmonella_phage	1.5e-54	54.9
AVA40760.1\|2622342_2625648_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	3.2e-186	43.1
AVA40761.1\|2625650_2625851_-\|tail	tail assembly chaperone	NA	NA	NA	NA
AVA40762.1\|2625904_2626255_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	6.2e-16	40.5
AVA40763.1\|2626254_2626731_-\|tail	phage tail protein	Q7Y403	Yersinia_phage	6.9e-58	75.5
AVA42039.1\|2626753_2627146_-	hypothetical protein	Q7Y404	Yersinia_phage	1.2e-31	57.9
AVA40764.1\|2627154_2627544_-	hypothetical protein	Q7Y405	Yersinia_phage	2.2e-30	50.0
AVA40765.1\|2627530_2627857_-\|head,tail	head-tail adaptor protein	Q7Y406	Yersinia_phage	2.6e-16	44.5
AVA42040.1\|2627863_2628166_-\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	6.8e-35	70.0
AVA42041.1\|2628218_2629481_-\|capsid	phage major capsid protein	A0A1W6JP20	Morganella_phage	5.1e-185	82.0
AVA40766.1\|2629496_2630102_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	5.3e-87	81.0
AVA40767.1\|2630091_2631321_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	4.8e-212	87.8
AVA40768.1\|2631468_2633202_-\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	0.0e+00	98.2
AVA40769.1\|2633205_2633679_-\|terminase	phage terminase small subunit P27 family	A0A1P8DTK5	Proteus_phage	9.2e-55	66.9
AVA40770.1\|2633826_2634024_-	hypothetical protein	A0A1P8DTB8	Proteus_phage	6.4e-26	87.7
AVA40771.1\|2634020_2634371_-	HNH endonuclease	A0A1P8DTD1	Proteus_phage	2.4e-60	93.0
AVA40772.1\|2634430_2634808_-	hypothetical protein	A0A1P8DTD7	Proteus_phage	2.5e-39	72.4
AVA40773.1\|2635416_2635881_-\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	3.1e-47	79.1
AVA40774.1\|2636023_2636494_-	lysozyme	A0A1W6JNW4	Morganella_phage	2.9e-48	57.5
AVA40775.1\|2636493_2636763_-	hypothetical protein	A0A2H4FNF0	Salmonella_phage	3.3e-17	47.8
AVA40776.1\|2637126_2637390_+	DUF1883 domain-containing protein	NA	NA	NA	NA
AVA40777.1\|2637369_2637549_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
AVA40778.1\|2637629_2638151_-	DUF1440 domain-containing protein	NA	NA	NA	NA
AVA40779.1\|2638447_2638831_-	antitermination protein	A0A088CD47	Shigella_phage	5.5e-50	72.2
AVA40780.1\|2638830_2639805_-	DNA primase	A0A286N2Q0	Klebsiella_phage	3.4e-104	55.4
AVA40781.1\|2639801_2641367_-	helicase	A0A286N2P9	Klebsiella_phage	2.5e-221	69.9
AVA40782.1\|2641627_2641876_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	1.8e-17	56.0
AVA40783.1\|2641868_2642126_-	transcriptional regulator	G8C7U2	Escherichia_phage	2.1e-16	60.8
AVA40784.1\|2642251_2642950_+	hypothetical protein	E7C9R0	Salmonella_phage	6.6e-49	44.2
AVA40785.1\|2643256_2644126_+	hypothetical protein	NA	NA	NA	NA
AVA40786.1\|2644148_2644400_+	hypothetical protein	NA	NA	NA	NA
AVA40787.1\|2644389_2644806_+	hypothetical protein	NA	NA	NA	NA
AVA40788.1\|2644965_2645430_+	transcriptional regulator	A0A059VK24	Pseudomonas_phage	2.3e-05	35.0
AVA40789.1\|2645431_2645638_+	hypothetical protein	NA	NA	NA	NA
AVA40790.1\|2645640_2645838_+	hypothetical protein	NA	NA	NA	NA
AVA40791.1\|2645824_2646022_+	hypothetical protein	NA	NA	NA	NA
AVA40792.1\|2646014_2646299_+	hypothetical protein	NA	NA	NA	NA
AVA40793.1\|2646261_2646552_+	hypothetical protein	NA	NA	NA	NA
AVA40794.1\|2646544_2646967_+	hypothetical protein	NA	NA	NA	NA
AVA40795.1\|2647041_2647395_+	hypothetical protein	NA	NA	NA	NA
AVA42042.1\|2647372_2647588_+	hypothetical protein	NA	NA	NA	NA
AVA40796.1\|2647584_2648061_+	hypothetical protein	NA	NA	NA	NA
AVA40797.1\|2648072_2648771_+	DNA-binding protein	A0A286S260	Klebsiella_phage	6.1e-63	57.0
AVA40798.1\|2648770_2649304_+	hypothetical protein	A0A088C4R7	Shewanella_sp._phage	1.1e-22	35.9
AVA40799.1\|2649312_2649540_+	hypothetical protein	NA	NA	NA	NA
AVA40800.1\|2649536_2649788_+	hypothetical protein	NA	NA	NA	NA
AVA40801.1\|2649774_2650173_+	hypothetical protein	NA	NA	NA	NA
AVA40802.1\|2650159_2650483_+	hypothetical protein	NA	NA	NA	NA
AVA40803.1\|2650469_2650682_+	excisionase	I6PBM8	Cronobacter_phage	3.1e-18	61.8
AVA40804.1\|2650636_2651818_+\|integrase	integrase	I6PDJ1	Cronobacter_phage	1.1e-152	69.4
AVA40805.1\|2652134_2653376_+\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	2.4e-102	46.8
AVA40806.1\|2653590_2654901_-	hypothetical protein	Q858S9	Enterobacteria_phage	5.7e-62	33.6
AVA40807.1\|2655076_2655367_-	hypothetical protein	NA	NA	NA	NA
AVA40808.1\|2655430_2656510_-	hypothetical protein	NA	NA	NA	NA
AVA40809.1\|2657118_2658702_+	hypothetical protein	NA	NA	NA	NA
AVA40810.1\|2660049_2660229_-	hypothetical protein	NA	NA	NA	NA
AVA40811.1\|2660594_2661290_+	fimbrial protein	NA	NA	NA	NA
AVA40812.1\|2661416_2662544_-	hypothetical protein	NA	NA	NA	NA
AVA40813.1\|2663076_2663781_+	fimbrial protein	NA	NA	NA	NA
2662912:2662927	attR	NA	NA	NA	NA
AVA40814.1\|2667483_2667912_+	hypothetical protein	NA	NA	NA	NA
AVA40815.1\|2667901_2668159_+	hypothetical protein	NA	NA	NA	NA
AVA40816.1\|2668362_2668593_+	hypothetical protein	NA	NA	NA	NA
AVA40817.1\|2668851_2669538_+	type 1 fimbrial protein	NA	NA	NA	NA
AVA40818.1\|2670129_2670525_+	hypothetical protein	NA	NA	NA	NA
AVA40819.1\|2670536_2672033_+	malate dehydrogenase (quinone)	NA	NA	NA	NA
AVA42043.1\|2672982_2673135_+	sugar kinase	Q6QLL3	Human_immunodeficiency_virus	9.6e-14	97.3
AVA40820.1\|2673172_2674189_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	7.0e-185	99.1

DBSCAN-SWA_10

2714568 : 2749638

Salmonella_phage(27.78%)

portal,head,tail,capsid,integrase,tRNA,plate,holin,lysis

attL 2740602:2740617|attR 2747210:2747225

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA40857.1\|2714568_2714787_-	transcriptional regulator	Q53ZE7	Salmonella_virus	1.7e-19	70.3
AVA40858.1\|2714839_2715937_-	late control protein D	E5G6Q3	Salmonella_phage	7.3e-111	56.2
AVA40859.1\|2715936_2716401_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	8.8e-42	56.2
AVA40860.1\|2716400_2719235_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	5.8e-112	41.6
AVA42044.1\|2719227_2719401_-\|tail	GpE family phage tail protein	A0A2I8TV82	Erwinia_phage	1.6e-09	50.9
AVA40861.1\|2719361_2719709_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.5e-19	56.8
AVA40862.1\|2719728_2720244_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.6e-55	58.5
AVA40863.1\|2720247_2721420_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	1.0e-166	71.4
AVA40864.1\|2721519_2723151_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.8e-57	72.4
AVA40865.1\|2723140_2723752_-\|tail	phage tail protein I	F1BUP2	Erwinia_phage	3.2e-76	69.4
AVA40866.1\|2723744_2724653_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	1.3e-108	66.6
AVA40867.1\|2724654_2724993_-\|plate	baseplate assembly protein	F1BUP4	Erwinia_phage	1.4e-25	49.5
AVA40868.1\|2724989_2725616_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	9.0e-58	59.8
AVA40869.1\|2725681_2726317_-	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.5e-28	35.8
AVA40870.1\|2726306_2726744_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.2e-32	48.6
AVA40871.1\|2726718_2727222_-\|lysis	lysis protein	M1FJ79	Enterobacteria_phage	1.4e-05	30.1
AVA40872.1\|2727218_2727623_-	peptidase M15	K4F776	Cronobacter_phage	4.6e-39	57.4
AVA40873.1\|2727615_2727930_-\|holin	holin	NA	NA	NA	NA
AVA40874.1\|2727949_2728156_-\|tail	phage tail protein	K4PAW7	Burkholderia_phage	8.1e-16	51.5
AVA40875.1\|2728155_2728611_-\|head	head protein	E5E3S2	Burkholderia_phage	2.4e-28	45.3
AVA40876.1\|2728688_2729357_-	hypothetical protein	F1BUQ7	Erwinia_phage	7.2e-45	46.6
AVA40877.1\|2729356_2730502_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-128	67.7
AVA40878.1\|2730517_2731327_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	3.4e-65	48.8
AVA40879.1\|2731499_2733254_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	2.3e-260	73.2
AVA40880.1\|2733253_2734282_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	4.0e-135	67.5
AVA40881.1\|2734761_2735157_+	N-acetyltransferase	NA	NA	NA	NA
AVA40882.1\|2735227_2735908_-	hypothetical protein	V9IQL5	Stenotrophomonas_phage	1.9e-16	27.2
AVA40883.1\|2735909_2736122_-	hypothetical protein	NA	NA	NA	NA
AVA40884.1\|2736114_2738493_-	replication protein	Q7Y4B8	Escherichia_virus	1.1e-164	47.3
AVA40885.1\|2738492_2738816_-	hypothetical protein	NA	NA	NA	NA
AVA40886.1\|2738815_2739643_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	3.0e-61	47.8
AVA40887.1\|2739642_2739951_-	DUF3850 domain-containing protein	A0A218M496	Shigella_phage	6.5e-09	41.1
AVA40888.1\|2739952_2740174_-	hypothetical protein	F1BUS2	Erwinia_phage	2.6e-12	52.1
AVA40889.1\|2740166_2740424_-	hypothetical protein	NA	NA	NA	NA
AVA40890.1\|2740441_2740837_-	hypothetical protein	NA	NA	NA	NA
2740602:2740617	attL	NA	NA	NA	NA
AVA40891.1\|2740886_2741162_-	hypothetical protein	NA	NA	NA	NA
AVA42045.1\|2741320_2741506_-	hypothetical protein	NA	NA	NA	NA
AVA40892.1\|2741523_2741799_-	hypothetical protein	Q1JS60	Enterobacteria_phage	3.7e-16	47.0
AVA40893.1\|2741901_2742201_+	XRE family transcriptional regulator	Q1JS29	Enterobacteria_phage	4.8e-33	70.7
AVA40894.1\|2742267_2743251_+\|integrase	integrase	Q83VS6	Escherichia_phage	8.2e-98	56.2
AVA40895.1\|2743419_2744934_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	4.1e-88	38.0
AVA40896.1\|2744942_2746041_-	peptide chain release factor 2	A0A0S4KWG0	Pseudomonas_phage	4.1e-05	37.3
AVA40897.1\|2746212_2747946_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	4.7e-64	29.1
2747210:2747225	attR	NA	NA	NA	NA
AVA40898.1\|2747955_2748663_-	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA
AVA40899.1\|2748696_2749638_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	4.1e-30	30.7

DBSCAN-SWA_11

2938091 : 2998408

Proteus_phage(23.08%)

portal,tail,coat,integrase,terminase,tRNA,holin,lysis

attL 2953615:2953661|attR 2994018:2994064

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA41039.1\|2938091_2941322_-	hypothetical protein	A0A1W6JNU2	Morganella_phage	4.6e-105	42.2
AVA41040.1\|2941338_2941680_-	hypothetical protein	NA	NA	NA	NA
AVA41041.1\|2941679_2941853_-	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA
AVA41042.1\|2942034_2942544_-	hypothetical protein	NA	NA	NA	NA
AVA41043.1\|2943528_2946249_-	DNA primase	A0A1W6JPG0	Morganella_phage	0.0e+00	66.1
AVA41044.1\|2946245_2946590_-	hypothetical protein	A0A1W6JPD8	Morganella_phage	2.8e-45	71.9
AVA41045.1\|2946604_2947201_-	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.9e-29	38.8
AVA41046.1\|2947200_2947386_-	hypothetical protein	NA	NA	NA	NA
AVA41047.1\|2947555_2948167_-	toxin Bro	A0A1B5FPC0	Escherichia_phage	4.3e-20	46.3
AVA41048.1\|2948163_2948373_-	hypothetical protein	A0A1W6JPF1	Morganella_phage	4.7e-11	52.2
AVA41049.1\|2948369_2948564_-	hypothetical protein	NA	NA	NA	NA
AVA41050.1\|2948566_2948740_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AVA42052.1\|2948732_2949743_-	hypothetical protein	A0A1W6JPK3	Morganella_phage	3.3e-78	52.2
AVA41051.1\|2949763_2950372_-	antirepressor protein	A0A1W6JPH8	Morganella_phage	1.8e-71	68.8
AVA41052.1\|2950384_2950780_-	hypothetical protein	A0A1W6JPH9	Morganella_phage	1.4e-27	57.0
AVA41053.1\|2950779_2950998_-	AlpA family transcriptional regulator	A0A2H4J8C8	uncultured_Caudovirales_phage	8.6e-08	45.3
AVA41054.1\|2951114_2952038_-	hypothetical protein	NA	NA	NA	NA
AVA41055.1\|2952239_2953451_-\|integrase	integrase	Q7M297	Enterobacteria_phage	3.8e-129	55.7
2953615:2953661	attL	NA	NA	NA	NA
AVA41056.1\|2953847_2954054_+	DNA polymerase II	A0A1P8DTI0	Proteus_phage	3.8e-29	97.1
AVA41057.1\|2954133_2955129_+	hypothetical protein	NA	NA	NA	NA
AVA41058.1\|2957194_2959138_-	DNA transfer protein	C6ZR18	Salmonella_phage	5.5e-146	56.5
AVA42053.1\|2959122_2960691_-	acyltransferase	B6SCW4	Bacteriophage	1.1e-88	44.0
AVA41059.1\|2960700_2961360_-	DNA transfer protein	Q2A0B2	Sodalis_phage	8.6e-59	68.1
AVA41060.1\|2961353_2961815_-	DUF2824 domain-containing protein	Q2A0B3	Sodalis_phage	9.3e-60	71.3
AVA41061.1\|2961814_2962513_-\|tail	phage tail protein	C6ZR14	Salmonella_phage	7.0e-35	66.5
AVA42054.1\|2962512_2963751_-	hypothetical protein	Q9T1S0	Acyrthosiphon_pisum_secondary_endosymbiont_phage	2.4e-147	69.3
AVA41062.1\|2964265_2964763_-	recombinase RmuC	A0A2D1GLR5	Escherichia_phage	3.3e-47	61.9
AVA41063.1\|2964740_2964950_-	hypothetical protein	NA	NA	NA	NA
AVA41064.1\|2965001_2966285_-\|coat	coat protein	G5DA99	Enterobacteria_phage	4.4e-168	67.6
AVA41065.1\|2966284_2967199_-	scaffolding protein	A0A192Y6T4	Salmonella_phage	3.7e-92	61.5
AVA41066.1\|2967213_2969304_-\|portal	portal protein	A0A2H4FNE2	Salmonella_phage	4.7e-236	66.7
AVA41067.1\|2969306_2970803_-\|terminase	terminase	A0A0M4S5Z3	Salmonella_phage	8.9e-253	81.8
AVA41068.1\|2970777_2971269_-	DNA-packaging protein	I6S1J2	Salmonella_phage	1.5e-71	79.8
AVA41069.1\|2971457_2971907_-	hypothetical protein	NA	NA	NA	NA
AVA42055.1\|2971916_2972141_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	3.9e-11	53.4
AVA41070.1\|2972488_2972854_-	hypothetical protein	NA	NA	NA	NA
AVA41071.1\|2972853_2973306_-\|lysis	lysis protein	A0A1P8DTG0	Proteus_phage	2.6e-54	80.4
AVA41072.1\|2973302_2973707_-	structural protein	A0A0E3JJ20	Enterobacteria_phage	2.2e-25	45.6
AVA41073.1\|2973699_2973987_-\|holin	phage holin family protein	NA	NA	NA	NA
AVA41074.1\|2973983_2974373_-	hypothetical protein	S4TRS4	Salmonella_phage	4.2e-13	35.0
AVA41075.1\|2974857_2975613_-	antitermination protein	G0ZNC6	Cronobacter_phage	2.7e-48	46.2
AVA41076.1\|2975609_2975801_-	hypothetical protein	A0A1P8DTD3	Proteus_phage	1.0e-28	96.8
AVA41077.1\|2975800_2976421_-	hypothetical protein	A0A2I7RAC0	Vibrio_phage	6.7e-45	53.6
AVA41078.1\|2976694_2977138_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.1e-37	55.3
AVA41079.1\|2977139_2977349_-	hypothetical protein	A0A1P8DTG8	Proteus_phage	1.6e-30	96.8
AVA41080.1\|2977341_2977521_-	hypothetical protein	NA	NA	NA	NA
AVA41081.1\|2977517_2977742_-	DUF551 domain-containing protein	NA	NA	NA	NA
AVA41082.1\|2977953_2978175_-	hypothetical protein	NA	NA	NA	NA
AVA41083.1\|2978377_2979289_-	recombination-associated protein RdgC	S4TWL4	Salmonella_phage	9.0e-99	61.2
AVA41084.1\|2979299_2979986_-	DNA replication protein	A0A1P8DTF3	Proteus_phage	1.2e-108	88.6
AVA41085.1\|2979982_2980921_-	replication protein 15	A0A1P8DTG2	Proteus_phage	6.0e-82	52.9
AVA41086.1\|2980917_2981601_-	phage regulatory protein/antirepressor Ant	A0A1P8DTE1	Proteus_phage	8.2e-113	93.0
AVA41087.1\|2981622_2981967_-	hypothetical protein	A0A1P8DTF0	Proteus_phage	4.7e-08	38.6
AVA41088.1\|2982102_2982288_-	hypothetical protein	A4KWW0	Enterobacteria_phage	2.3e-09	58.3
AVA41089.1\|2982383_2983094_+	LexA family transcriptional repressor	A4KWV9	Enterobacteria_phage	2.5e-80	62.1
AVA41090.1\|2983334_2984252_+	serine dehydrogenasease	NA	NA	NA	NA
AVA41091.1\|2984803_2985073_+	hypothetical protein	A0A1P8DTK1	Proteus_phage	6.9e-23	70.3
AVA41092.1\|2985088_2985604_-	hypothetical protein	NA	NA	NA	NA
AVA41093.1\|2986031_2986265_+	hypothetical protein	A0A1P8DTG4	Proteus_phage	6.4e-25	79.7
AVA41094.1\|2986266_2986566_+	hypothetical protein	NA	NA	NA	NA
AVA41095.1\|2986634_2986895_+	hypothetical protein	NA	NA	NA	NA
AVA41096.1\|2987112_2987367_+	hypothetical protein	NA	NA	NA	NA
AVA41097.1\|2987363_2987615_+	hypothetical protein	A0A1P8DTG3	Proteus_phage	4.1e-38	95.2
AVA41098.1\|2987611_2988496_+	recombinase RecT	A0A2L1IV84	Escherichia_phage	1.1e-93	61.9
AVA41099.1\|2988492_2989191_+	exonuclease	A0A2R2Z325	Escherichia_phage	2.6e-74	57.3
AVA41100.1\|2989180_2989714_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.7e-55	58.8
AVA41101.1\|2989729_2990038_+	hypothetical protein	NA	NA	NA	NA
AVA41102.1\|2990293_2990482_+	hypothetical protein	NA	NA	NA	NA
AVA41103.1\|2990474_2990768_+	hypothetical protein	NA	NA	NA	NA
AVA41104.1\|2991234_2991552_+	recombinase	A0A2I7S0T5	Vibrio_phage	3.2e-11	37.8
AVA41105.1\|2991529_2991712_+	hypothetical protein	NA	NA	NA	NA
AVA41106.1\|2991740_2992343_+	DNA methyltransferase	G8C7S6	Escherichia_phage	6.4e-61	58.1
AVA41107.1\|2992427_2992622_+	hypothetical protein	A0A1P8DTH3	Proteus_phage	3.0e-28	89.1
AVA41108.1\|2992631_2992964_+	DNA-binding protein	NA	NA	NA	NA
AVA41109.1\|2992840_2994004_+\|integrase	integrase	G8C7S0	Escherichia_phage	9.5e-178	75.7
AVA41110.1\|2994286_2995159_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.7e-34	36.8
2994018:2994064	attR	NA	NA	NA	NA
AVA41111.1\|2995162_2995375_+	ribosome-associated protein	NA	NA	NA	NA
AVA41112.1\|2996010_2996952_+	1-phosphofructokinase	NA	NA	NA	NA
AVA41113.1\|2997016_2998408_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	2.7e-38	32.3

DBSCAN-SWA_12

3258581 : 3267437

Caulobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA41319.1\|3258581_3260150_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.6e-10	33.1
AVA41320.1\|3260550_3261231_+	HAD-IB family hydrolase	NA	NA	NA	NA
AVA41321.1\|3261327_3261903_-	TerD family protein	K4JRX3	Caulobacter_phage	1.2e-27	40.3
AVA41322.1\|3261979_3262558_-	chemical-damaging agent resistance protein C	K4JRX3	Caulobacter_phage	3.2e-33	43.1
AVA41323.1\|3262625_3263651_-	tellurium resistance protein TerC	K7QKE8	Escherichia_phage	1.0e-74	47.9
AVA41324.1\|3263685_3264141_-	Tellurium resistance protein TerB	NA	NA	NA	NA
AVA41325.1\|3264165_3265314_-	tellurium resistance protein TerA	NA	NA	NA	NA
AVA41326.1\|3265314_3265899_-	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	4.2e-17	30.2
AVA41327.1\|3266291_3267437_+	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	1.2e-31	27.2

DBSCAN-SWA_13

3912305 : 3971353

uncultured_Caudovirales_phage(22.22%)

protease,tRNA,transposase,integrase

attL 3950006:3950022|attR 3969596:3969612

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVA41880.1\|3912305_3912890_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
AVA41881.1\|3912984_3913896_-	N-acetylglucosamine kinase	NA	NA	NA	NA
AVA41882.1\|3915338_3915734_+	hypothetical protein	NA	NA	NA	NA
AVA41883.1\|3915881_3917996_+	cellulose synthase catalytic subunit (UDP-forming)	NA	NA	NA	NA
AVA41884.1\|3917998_3920347_+	cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB	NA	NA	NA	NA
AVA41885.1\|3924059_3924530_+	cellulose biosynthesis protein	NA	NA	NA	NA
AVA41886.1\|3924568_3925474_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
AVA41887.1\|3925647_3926610_+	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	8.7e-60	45.1
AVA41888.1\|3926683_3927721_+	endoglucanase	NA	NA	NA	NA
AVA41889.1\|3927859_3929509_-	phosphoethanolamine transferase	NA	NA	NA	NA
AVA41890.1\|3929617_3931480_-\|tRNA	selenocysteinyl-tRNA-specific translation elongation factor SelB	A0A2K9KZ60	Tupanvirus	1.1e-13	26.0
AVA41891.1\|3931476_3932868_-\|tRNA	L-seryl-tRNA(Sec) selenium transferase	NA	NA	NA	NA
AVA41892.1\|3932883_3933804_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
AVA41893.1\|3934002_3934659_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
AVA41894.1\|3934655_3935594_-	formate dehydrogenase subunit beta	NA	NA	NA	NA
AVA41895.1\|3935605_3938653_-	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
AVA41896.1\|3938832_3939663_+	sulfurtransferase FdhD	NA	NA	NA	NA
AVA41897.1\|3939659_3940430_-	transferase	NA	NA	NA	NA
AVA41898.1\|3940440_3941316_-	glycosyltransferase	NA	NA	NA	NA
AVA41899.1\|3941607_3942150_-	flagellar protein	NA	NA	NA	NA
AVA41900.1\|3942364_3943336_+	acyltransferase	NA	NA	NA	NA
AVA41901.1\|3943460_3944348_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVA41902.1\|3944762_3945563_+	hypothetical protein	NA	NA	NA	NA
AVA41903.1\|3945737_3947090_+	DUF560 domain-containing protein	NA	NA	NA	NA
3950006:3950022	attL	NA	NA	NA	NA
AVA41904.1\|3950238_3951042_+	energy transducer TonB	NA	NA	NA	NA
AVA41905.1\|3951095_3952961_-	hypothetical protein	NA	NA	NA	NA
AVA41906.1\|3953088_3954018_-	phosphoesterase	NA	NA	NA	NA
AVA41907.1\|3954202_3954667_-	DUF1097 domain-containing protein	NA	NA	NA	NA
AVA41908.1\|3955527_3957015_+	sodium-independent anion transporter	A0A2H4J153	uncultured_Caudovirales_phage	3.3e-215	78.5
AVA41909.1\|3957025_3957877_+	universal stress protein	A0A2H4J154	uncultured_Caudovirales_phage	1.6e-52	36.4
AVA41910.1\|3958137_3958731_-	hypothetical protein	NA	NA	NA	NA
AVA41911.1\|3958936_3959701_-\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AVA41912.1\|3959788_3959902_+	NTP-binding protein	NA	NA	NA	NA
AVA41913.1\|3960207_3960708_-	N-acetyltransferase	NA	NA	NA	NA
AVA41914.1\|3960726_3960906_+	hypothetical protein	NA	NA	NA	NA
AVA41915.1\|3960835_3961675_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
AVA41916.1\|3961668_3962016_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVA41917.1\|3962163_3962985_-	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
AVA42070.1\|3963116_3963908_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
AVA41918.1\|3964053_3965067_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	6.1e-72	45.5
AVA41919.1\|3965005_3965620_+	DUF3330 domain-containing protein	NA	NA	NA	NA
AVA41920.1\|3965745_3966306_+	DNA resolvase	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
AVA41921.1\|3966308_3969260_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
AVA42071.1\|3969268_3969670_+	hypothetical protein	NA	NA	NA	NA
3969596:3969612	attR	NA	NA	NA	NA
AVA41922.1\|3969754_3970459_-\|transposase	IS6 family transposase IS1006	A0A077SL39	Escherichia_phage	1.9e-120	85.8
AVA41923.1\|3970516_3971353_+\|transposase	IS91 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026571

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection