CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026758	Klebsiella aerogenes strain AR_0062 plasmid tig00000058_pilon, complete sequence	0 crisprs	NA	0	0	0	0
CP026759	Klebsiella aerogenes strain AR_0062 plasmid tig00000059_pilon, complete sequence	0 crisprs	NA	0	0	0	0
CP026756	Klebsiella aerogenes strain AR_0062 chromosome, complete genome	0 crisprs	cas3,csa3,DEDDh,DinG,WYL	0	0	3	0
CP026760	Klebsiella aerogenes strain AR_0062 plasmid unnamed4	1 crisprs	DEDDh	1	1	1	1
CP032930	Klebsiella aerogenes strain AR_0062 plasmid unnamed5, complete sequence	0 crisprs	NA	0	0	0	0
CP026757	Klebsiella aerogenes strain AR_0062 plasmid tig00000053_pilon, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2226022 : 2292591

Salmonella_phage(36.73%)

tail,protease,terminase,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE99137.1\|2226022_2227489_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.7
AVE99138.1\|2227558_2229136_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
AVE99139.1\|2229328_2230579_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	2.2e-196	81.4
AVE99140.1\|2230595_2230904_-	hypothetical protein	I6PD68	Cronobacter_phage	1.6e-23	53.9
AVE99141.1\|2230903_2231206_-	hypothetical protein	NA	NA	NA	NA
AVE99142.1\|2231202_2231793_-	adenine methylase	T1SA14	Salmonella_phage	4.0e-108	92.8
AVE99143.1\|2231785_2232082_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	5.2e-32	69.7
AVE99144.1\|2232191_2232440_-	AlpA family phage regulatory protein	A0A193GYW1	Enterobacter_phage	8.5e-36	85.4
AVE99145.1\|2232490_2233372_-	recombinase RecT	T1SBJ5	Salmonella_phage	1.3e-139	86.3
AVE99146.1\|2233368_2234190_-	exodeoxyribonuclease VIII	A0A193GYK2	Enterobacter_phage	7.5e-153	93.4
AVF01940.1\|2234401_2234701_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	6.1e-20	49.5
AVE99147.1\|2235003_2235591_-	helix-turn-helix domain-containing protein	G9L6A6	Escherichia_phage	6.3e-61	61.0
AVE99148.1\|2235745_2235976_+	hypothetical protein	A0A193GYK6	Enterobacter_phage	3.0e-35	90.8
AVE99149.1\|2236124_2236334_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	8.0e-27	81.2
AVE99150.1\|2236333_2237101_+	primosomal protein	A0A193GZ86	Enterobacter_phage	7.0e-137	88.6
AVE99151.1\|2237097_2237883_+	replication protein	A0A193GYX1	Enterobacter_phage	1.4e-137	89.3
AVE99152.1\|2238002_2238347_+	DUF1064 domain-containing protein	T1SA23	Salmonella_phage	2.4e-52	86.0
AVE99153.1\|2239221_2239641_+	hypothetical protein	NA	NA	NA	NA
AVE99154.1\|2239773_2240289_+	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	3.8e-70	75.8
AVE99155.1\|2240820_2241159_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.1e-49	87.3
AVF01941.1\|2241234_2241564_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.0e-28	60.7
AVE99156.1\|2241621_2242206_+\|terminase	terminase small subunit	G9L6B7	Escherichia_phage	1.2e-85	84.5
AVE99157.1\|2242202_2243672_+\|terminase	terminase	Q858H3	Salmonella_phage	2.0e-281	94.1
AVE99158.1\|2243707_2243983_-	hypothetical protein	NA	NA	NA	NA
AVE99159.1\|2244641_2244848_+	hypothetical protein	T1SA67	Salmonella_phage	2.6e-06	88.2
AVE99160.1\|2244862_2246542_+\|tail	phage tail protein	T1S9Z7	Salmonella_phage	2.4e-262	81.2
AVE99161.1\|2246538_2246835_+	hypothetical protein	T1SBI9	Salmonella_phage	8.6e-35	72.4
AVE99162.1\|2246840_2247110_+	hypothetical protein	V5KSC6	Escherichia_phage	3.1e-23	83.8
AVE99163.1\|2247120_2247819_+	peptidase	G9L6C4	Escherichia_phage	4.8e-76	86.2
AVE99164.1\|2247833_2248820_+	hypothetical protein	A0A193GZ49	Enterobacter_phage	5.2e-177	93.6
AVE99165.1\|2248873_2249329_+	hypothetical protein	A0A193GYT9	Enterobacter_phage	5.7e-62	84.1
AVE99166.1\|2249339_2249687_+	hypothetical protein	G9L6C7	Escherichia_phage	4.1e-36	68.7
AVE99167.1\|2249737_2250061_+	hypothetical protein	G9L6C8	Escherichia_phage	7.0e-46	85.0
AVE99168.1\|2250060_2250666_+	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	8.1e-88	78.0
AVE99169.1\|2250665_2253143_+	hypothetical protein	Q858G3	Salmonella_phage	0.0e+00	84.6
AVE99170.1\|2253142_2253607_+	hypothetical protein	T1SA73	Salmonella_phage	9.6e-73	81.8
AVE99171.1\|2253606_2254149_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.3e-54	66.1
AVE99172.1\|2254160_2256695_+	hypothetical protein	Q858G0	Salmonella_phage	0.0e+00	82.3
AVE99173.1\|2256694_2258260_+	hypothetical protein	Q858F9	Salmonella_phage	1.6e-220	69.1
AVE99174.1\|2258259_2261025_+	hypothetical protein	Q858F8	Salmonella_phage	0.0e+00	94.8
AVE99175.1\|2261161_2261551_+	hypothetical protein	NA	NA	NA	NA
AVF01942.1\|2261589_2262066_-	hypothetical protein	G9L6E0	Escherichia_phage	9.6e-60	71.0
AVE99176.1\|2262112_2262292_-	hypothetical protein	NA	NA	NA	NA
AVE99177.1\|2262481_2263153_-	BRO-like protein	A0A193GYJ9	Enterobacter_phage	3.7e-73	62.2
AVE99178.1\|2263466_2263727_-	hypothetical protein	T1SA06	Salmonella_phage	1.9e-33	82.4
AVE99179.1\|2263920_2266308_+\|tail	phage tail protein	R9TMK5	Aeromonas_phage	7.6e-89	37.8
AVE99180.1\|2266311_2266572_+	hypothetical protein	L0ARW5	Klebsiella_phage	6.2e-21	56.6
AVE99181.1\|2266661_2267066_+	hypothetical protein	T1SA79	Salmonella_phage	3.2e-56	83.6
AVE99182.1\|2267052_2267358_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	6.0e-39	81.4
AVE99183.1\|2267347_2267977_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	4.8e-99	84.7
AVE99184.1\|2267973_2268474_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	5.9e-60	76.9
AVE99185.1\|2268708_2268942_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
AVE99186.1\|2268972_2269305_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
AVE99187.1\|2269339_2270548_-	MFS transporter	NA	NA	NA	NA
AVE99188.1\|2270646_2271540_+	LysR family transcriptional regulator	NA	NA	NA	NA
AVE99189.1\|2271543_2271753_-	DUF2633 family protein	G9L6F2	Escherichia_phage	4.2e-20	76.7
AVE99190.1\|2272105_2274337_+	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
AVE99191.1\|2274385_2275912_-	exopolyphosphatase	NA	NA	NA	NA
AVE99192.1\|2275915_2277976_-	polyphosphate kinase 1	NA	NA	NA	NA
AVF01943.1\|2278153_2279812_+	hypothetical protein	NA	NA	NA	NA
AVE99193.1\|2279817_2280915_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
AVE99194.1\|2280889_2282341_-	MFS transporter	NA	NA	NA	NA
AVE99195.1\|2282761_2284102_+	glycoside hydrolase family 28 protein	NA	NA	NA	NA
AVE99196.1\|2284155_2284797_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.9e-31	42.8
AVE99197.1\|2284793_2285831_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.1e-71	44.5
AVE99198.1\|2285938_2286058_+	hypothetical protein	NA	NA	NA	NA
AVE99199.1\|2286080_2287511_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
AVE99200.1\|2287707_2288334_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
AVE99201.1\|2288430_2289717_+	uracil permease	Q9KX94	Enterobacteria_phage	8.3e-66	38.1
AVE99202.1\|2289815_2290517_+	DnaA inactivator Hda	NA	NA	NA	NA
AVE99203.1\|2290758_2291118_-	arsenate reductase (glutaredoxin)	NA	NA	NA	NA
AVE99204.1\|2291127_2292591_-\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA

DBSCAN-SWA_2

3150743 : 3209633

Klebsiella_phage(17.24%)

tail,terminase,holin,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVE99929.1\|3150743_3151553_-	peptide ABC transporter ATP-binding protein SapF	G3M9Y6	Bacillus_virus	6.1e-14	27.0
AVE99930.1\|3151554_3152547_-	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	1.6e-08	26.1
AVE99931.1\|3152546_3153437_-	peptide ABC transporter permease SapC	NA	NA	NA	NA
AVE99932.1\|3153613_3154801_+	DUF4102 domain-containing protein	K7PGY1	Enterobacteria_phage	1.6e-119	52.7
AVE99933.1\|3154697_3155012_-	hypothetical protein	K7PM28	Enterobacteria_phage	4.1e-11	52.4
AVF01983.1\|3155021_3155261_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	1.9e-24	71.4
AVE99934.1\|3155268_3155577_-	hypothetical protein	I6PD68	Cronobacter_phage	1.9e-24	56.9
AVF01984.1\|3155573_3156248_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	1.1e-48	46.3
AVE99935.1\|3156291_3157380_-	enterohemolysin	H6WRX0	Salmonella_phage	3.3e-108	56.8
AVE99936.1\|3157391_3160532_-	exodeoxyribonuclease	H6WRX1	Salmonella_phage	7.0e-276	54.4
AVE99937.1\|3160671_3160830_-	hypothetical protein	K7P7H7	Enterobacteria_phage	2.9e-13	59.6
AVE99938.1\|3160838_3161030_-	DUF1482 family protein	NA	NA	NA	NA
AVF01985.1\|3161091_3161235_-	hypothetical protein	NA	NA	NA	NA
AVE99939.1\|3161515_3161728_+	hypothetical protein	A0A192Y6Q5	Salmonella_phage	4.3e-20	74.2
AVE99940.1\|3161756_3162200_-	hypothetical protein	NA	NA	NA	NA
AVE99941.1\|3162189_3162423_-	hypothetical protein	NA	NA	NA	NA
AVE99942.1\|3163115_3163502_-	XRE family transcriptional regulator	K7PM35	Enterobacteria_phage	3.7e-46	74.0
AVE99943.1\|3163606_3163840_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-20	61.6
AVE99944.1\|3163842_3164379_+	hypothetical protein	K7PJT7	Enterobacteria_phage	2.5e-64	70.9
AVE99945.1\|3164730_3165645_+	hypothetical protein	K7PGZ0	Enterobacteria_phage	3.0e-94	62.5
AVE99946.1\|3165641_3166385_+	Replication protein P	A0A0M3ULE2	Salmonella_phage	1.3e-63	54.4
AVE99947.1\|3166377_3166713_+	DUF977 family protein	H6WRX9	Salmonella_phage	1.1e-12	46.8
AVE99948.1\|3166705_3167491_+	hypothetical protein	C7BGF1	Burkholderia_phage	5.3e-63	53.3
AVE99949.1\|3167487_3167691_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.8e-26	84.8
AVE99950.1\|3167683_3167935_+	hypothetical protein	S5MQM0	Escherichia_phage	1.8e-09	49.3
AVE99951.1\|3167934_3168192_+	hypothetical protein	NA	NA	NA	NA
AVE99952.1\|3168188_3170168_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	8.0e-201	53.7
AVE99953.1\|3170320_3170764_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
AVE99954.1\|3171243_3171477_+	hypothetical protein	A0A0M4R5D9	Salmonella_phage	1.3e-17	54.5
AVE99955.1\|3171512_3172109_+	DUF1367 family protein	K7PKS6	Enterobacteria_phage	6.8e-87	77.0
AVE99956.1\|3172113_3172314_+	hypothetical protein	H6WRY8	Salmonella_phage	5.5e-25	75.8
AVE99957.1\|3172894_3173035_+	YlcG family protein	NA	NA	NA	NA
AVE99958.1\|3173031_3173853_+	antitermination protein	K7PKS8	Enterobacteria_phage	6.4e-112	72.9
AVE99959.1\|3174349_3174661_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	5.7e-29	68.0
AVE99960.1\|3174657_3175200_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	5.1e-73	71.9
AVE99961.1\|3175196_3175544_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-35	72.2
AVE99962.1\|3175540_3175816_+	hypothetical protein	G8C7W1	Escherichia_phage	6.4e-16	51.1
AVE99963.1\|3175805_3175955_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.8e-15	82.6
AVE99964.1\|3176219_3176477_+	hypothetical protein	NA	NA	NA	NA
AVE99965.1\|3176871_3177123_-	hypothetical protein	NA	NA	NA	NA
AVE99966.1\|3177552_3177753_+	hypothetical protein	K7PHC3	Enterobacterial_phage	1.0e-15	61.9
AVF01986.1\|3177875_3178211_+	TonB family protein	NA	NA	NA	NA
AVE99967.1\|3178359_3178605_+	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	1.0e-28	86.4
AVE99968.1\|3178673_3179678_+\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	2.0e-35	44.2
AVE99969.1\|3179655_3180960_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	2.2e-146	60.3
AVE99970.1\|3180964_3182389_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	2.0e-193	71.7
AVE99971.1\|3182372_3183485_+	hypothetical protein	I6PD76	Cronobacter_phage	9.9e-108	53.3
AVE99972.1\|3183591_3184356_+	hypothetical protein	G8C7P6	Escherichia_phage	1.1e-76	59.4
AVE99973.1\|3184443_3185580_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	2.8e-158	76.5
AVE99974.1\|3185625_3185838_+	hypothetical protein	G8C7P8	Escherichia_phage	4.5e-09	53.7
AVE99975.1\|3185841_3186252_+	protein singed	A0A0H5AUF0	Pseudomonas_phage	6.6e-09	38.2
AVE99976.1\|3186253_3186487_+	hypothetical protein	A0A1V0E8A3	Vibrio_phage	3.6e-12	51.5
AVE99977.1\|3186473_3186857_+	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	6.6e-19	41.3
AVE99978.1\|3186858_3187410_+	hypothetical protein	G8C7Q1	Escherichia_phage	2.3e-28	39.3
AVE99979.1\|3187406_3187799_+	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
AVE99980.1\|3187822_3188995_+	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	6.5e-25	27.9
AVE99981.1\|3189049_3189532_+	hypothetical protein	NA	NA	NA	NA
AVE99982.2\|3189669_3189867_+	hypothetical protein	NA	NA	NA	NA
AVE99983.1\|3189933_3190617_+	hypothetical protein	A0A0R6PJY5	Moraxella_phage	3.2e-40	41.9
AVE99984.1\|3190976_3193925_+\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	9.7e-102	36.9
AVE99985.1\|3193924_3194398_+	hypothetical protein	A0A286S298	Klebsiella_phage	3.1e-58	67.1
AVE99986.1\|3194384_3194867_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	2.3e-61	73.1
AVE99987.1\|3194876_3195257_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.0e-59	81.0
AVF01987.1\|3195742_3198289_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	69.9
AVE99988.1\|3200466_3201042_+	hypothetical protein	A0A286S1R5	Klebsiella_phage	4.3e-30	44.3
AVE99989.1\|3201173_3201956_+	HNH endonuclease	NA	NA	NA	NA
AVE99990.1\|3202034_3202250_-	hypothetical protein	NA	NA	NA	NA
AVE99991.1\|3202474_3202765_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.9e-10	41.2
AVE99992.1\|3202764_3204030_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	5.1e-201	81.0
AVE99993.1\|3204136_3204562_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.7e-52	72.9
AVE99994.1\|3204574_3205864_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.8e-167	70.4
AVE99995.1\|3205908_3206229_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	7.7e-21	43.8
AVE99996.1\|3206314_3207013_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.7e-89	68.9
AVE99997.1\|3207364_3208537_-	diguanylate phosphodiesterase	NA	NA	NA	NA
AVE99998.1\|3208955_3209633_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.1e-80	60.4

DBSCAN-SWA_3

4856939 : 4907804

Cronobacter_phage(24.07%)

head,transposase,holin,tail,tRNA,integrase

attL 4856752:4856798|attR 4904904:4904950

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4856752:4856798	attL	NA	NA	NA	NA
AVF01489.1\|4856939_4857266_-	hypothetical protein	K7PGV5	Enterobacterial_phage	1.8e-25	50.9
AVF02045.1\|4857265_4857505_-	hypothetical protein	K7P7N3	Enterobacteria_phage	1.1e-19	60.8
AVF02046.1\|4857679_4858933_+\|tail	phage tail protein	A0A1J0MHZ5	Klebsiella_phage	1.8e-89	45.3
AVF01490.1\|4859015_4860032_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.4e-187	100.0
AVF01491.1\|4861501_4861762_-	hypothetical protein	A0A1J0MFY2	Serratia_phage	1.8e-12	46.6
AVF01492.1\|4861766_4863860_-	hypothetical protein	A0A1J0MG53	Serratia_phage	1.6e-162	52.3
AVF01493.1\|4863917_4866395_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	91.6
AVF01494.1\|4866381_4866798_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	4.9e-68	86.0
AVF01495.1\|4866760_4867231_-	hypothetical protein	F1C5F1	Cronobacter_phage	2.5e-76	89.7
AVF01496.1\|4867230_4867728_-	hypothetical protein	F1C5F0	Cronobacter_phage	3.3e-87	88.5
AVF01497.1\|4867727_4870658_-\|tail	tail protein (tape measure)	F1C5E9	Cronobacter_phage	3.0e-143	43.0
AVF01498.1\|4870715_4871165_-	hypothetical protein	NA	NA	NA	NA
AVF01499.1\|4871225_4871909_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	2.1e-52	50.5
AVF01500.1\|4871967_4872711_-	Ig domain-containing protein	F1C5E5	Cronobacter_phage	2.4e-73	81.9
AVF01501.1\|4872771_4873155_-	hypothetical protein	F1C5E4	Cronobacter_phage	5.2e-40	63.8
AVF01502.1\|4873151_4873616_-	HK97 gp10 family phage protein	A0A2P1MXA4	Escherichia_phage	3.8e-29	44.2
AVF01503.1\|4873618_4873969_-	hypothetical protein	G0ZNE2	Cronobacter_phage	1.2e-38	66.1
AVF01504.1\|4873968_4874142_-	50S ribosomal protein L13	Q5G8X7	Enterobacteria_phage	2.9e-14	58.9
AVF01505.1\|4874138_4874543_-	hypothetical protein	A0A1V0E5R0	Salmonella_phage	9.6e-53	74.6
AVF01506.1\|4874603_4874888_-	hypothetical protein	A0A1V0E5P8	Salmonella_phage	9.5e-31	73.2
AVF01507.1\|4874898_4876002_-	hypothetical protein	G0ZND9	Cronobacter_phage	6.7e-157	73.8
AVF01508.1\|4876015_4876474_-	hypothetical protein	A0A125RNM2	Pseudomonas_phage	3.0e-58	77.9
AVF01509.1\|4876486_4877752_-	hypothetical protein	Q5G8Y2	Enterobacteria_phage	5.4e-219	91.0
AVF01510.1\|4877754_4878681_-\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	2.6e-162	92.5
AVF01511.1\|4878640_4879990_-	DUF1073 domain-containing protein	Q5G8Y4	Enterobacteria_phage	2.7e-208	78.6
AVF01512.1\|4880058_4880475_-	hypothetical protein	NA	NA	NA	NA
AVF01513.1\|4880544_4882023_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	2.9e-256	87.0
AVF01514.1\|4882009_4882489_-	DUF2280 domain-containing protein	F1C5D6	Cronobacter_phage	1.0e-48	59.7
AVF02047.1\|4882519_4883158_-	hypothetical protein	I6S676	Salmonella_phage	2.9e-112	88.7
AVF01515.1\|4883160_4883361_-	hypothetical protein	NA	NA	NA	NA
AVF01516.1\|4883351_4883552_-	hypothetical protein	NA	NA	NA	NA
AVF01517.1\|4883558_4883750_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.5e-19	80.7
AVF01518.1\|4883706_4883979_-	hypothetical protein	G8C7W1	Escherichia_phage	6.3e-08	39.3
AVF01519.1\|4883975_4884518_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	6.4e-76	74.7
AVF01520.1\|4884514_4884793_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.6e-09	40.5
AVF01521.1\|4884789_4885188_-	hypothetical protein	NA	NA	NA	NA
AVF01522.1\|4885494_4886307_-	antitermination protein	M9NZB0	Enterobacteria_phage	1.2e-94	62.6
AVF01523.1\|4886303_4886444_-	YlcG family protein	NA	NA	NA	NA
AVF01524.1\|4886440_4886665_-	protein ninY	Q76H69	Enterobacteria_phage	1.3e-22	60.8
AVF01525.1\|4886661_4887243_-	recombination protein NinG	G0ZNC4	Cronobacter_phage	6.0e-40	48.5
AVF01526.1\|4887245_4887446_-	hypothetical protein	H6WRY8	Salmonella_phage	5.5e-25	75.8
AVF01527.1\|4887450_4888050_-	DUF1367 family protein	K7PKS6	Enterobacteria_phage	6.1e-88	76.9
AVF01528.1\|4888460_4888694_-	DinI family protein	H6WRY5	Salmonella_phage	2.4e-24	67.5
AVF01529.1\|4888837_4889095_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	9.8e-27	71.2
AVF01530.1\|4889130_4891092_-	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	4.8e-206	56.0
AVF01531.1\|4891088_4891346_-	hypothetical protein	NA	NA	NA	NA
AVF01532.1\|4891348_4891693_-	hypothetical protein	NA	NA	NA	NA
AVF01533.1\|4891689_4892037_-	hypothetical protein	NA	NA	NA	NA
AVF01534.1\|4892881_4893085_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	1.2e-24	81.8
AVF01535.1\|4893081_4893450_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.5e-12	45.6
AVF01536.1\|4893442_4894186_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	1.3e-63	54.8
AVF01537.1\|4894182_4895103_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	1.4e-94	62.0
AVF01538.1\|4895454_4895991_-	hypothetical protein	K7PJT7	Enterobacteria_phage	1.9e-64	70.9
AVF01539.1\|4895993_4896224_-	hypothetical protein	H6WRX5	Salmonella_phage	2.7e-12	45.3
AVF01540.1\|4896334_4896748_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
AVF01541.1\|4896933_4897077_+	hypothetical protein	NA	NA	NA	NA
AVF01542.1\|4897138_4897330_+	DUF1482 family protein	NA	NA	NA	NA
AVF01543.1\|4897338_4897497_+	hypothetical protein	K7P7H7	Enterobacteria_phage	3.2e-12	57.7
AVF01544.1\|4897636_4900819_+	exodeoxyribonuclease	H6WRX1	Salmonella_phage	5.3e-279	55.1
AVF01545.1\|4900831_4901920_+	enterohemolysin	H6WRX0	Salmonella_phage	3.6e-110	57.6
AVF01546.1\|4901954_4902308_+	hypothetical protein	NA	NA	NA	NA
AVF01547.1\|4902300_4902912_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.9e-38	74.5
AVF01548.1\|4902908_4903217_+	hypothetical protein	I6PD68	Cronobacter_phage	7.1e-24	56.9
AVF02048.1\|4903224_4903467_+	DUF4060 family protein	M9P0E0	Enterobacteria_phage	2.5e-24	71.4
AVF01549.1\|4903726_4904890_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.9e-202	86.3
AVF01550.1\|4905301_4906168_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.0e-30	34.3
4904904:4904950	attR	NA	NA	NA	NA
AVF01551.1\|4906169_4906382_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
AVF01552.1\|4906418_4907804_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	4.6e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026760

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP026760_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026760_1

61035-61116

Orphan

Consensus_repeat	Method
TGACATTCTCAGATTGTGTTATCAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026760_1

>merge|CP026760|1|61035-61116|CRISPRCasFinder
TGACATTCTCAGATTGTGTTATCATGATTTTTCGTGATAAATCGTTCTTTGTTTGTGTGTCATTCTCAGATTGTGTTATCAT

>CP026760|1|1|61035-61116|CRISPRCasFinder
TGACATTCTCAGATTGTGTTATCAT	GATTTTTCGTGATAAATCGTTCTTTGTTTGTG
TGTCATTCTCAGATTGTGTTATCAT

Protein	Signature genes	Signature genes Name	Protein_function
CP026760.1\|AVF02267.1\|64892_65243_-\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AYN07492.1\|64089_64566_-\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	gnl\|CDD\|371132
CP026760.1\|AVF02262.1\|57779_58010_+\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AVF02256.1\|51219_51432_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373126
CP026760.1\|AVF02266.1\|63896_64127_-\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AVF02264.1\|58840_60763_-\|protelomerase	unknown	unknown	gnl\|CDD\|374724
CP026760.1\|AVF02257.1\|51512_52121_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP026760.1\|AVF02263.1\|58006_58786_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
CP026760.1\|AVF02265.1\|63120_63900_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
CP026760.1\|AVF02258.1\|52371_56376_+\|origin-of-replication-binding-family-protein	unknown	unknown	gnl\|CDD\|226990
CP026760.1\|AVF02259.1\|56368_56665_+\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AVF02261.1\|57618_57783_+\|host-cell-division-inhibitor-Icd-like-protein	unknown	unknown	unknown
CP026760.1\|AYN07491.1\|57021_57222_+\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AVF02268.1\|65239_65449_-\|hypothetical-protein	unknown	unknown	unknown
CP026760.1\|AVF02260.1\|56661_57012_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026760.1\|AVF02263.1\|58006_58786_+\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	3.30605e-36
CP026760.1\|AVF02265.1\|63120_63900_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	3.30605e-36
CP026760.1\|AVF02258.1\|52371_56376_+\|origin-of-replication-binding-family-protein	gnl\|CDD\|226990	COG4643, COG4643, Uncharacterized protein conserved in bacteria [Function unknown].	5.67664e-06
CP026760.1\|AVF02256.1\|51219_51432_-\|hypothetical-protein	gnl\|CDD\|373126	pfam14549, P22_Cro, DNA-binding transcriptional regulator Cro. Bacteriophage P22 Cro protein represses genes normally expressed in early phage development and is necessary for the late stage of lytic growth. It does this by binding to the OL and OR operator-regions normally used by the repressor protein for lysogenic maintenance.	2.16891e-20
CP026760.1\|AVF02257.1\|51512_52121_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.41766e-13
CP026760.1\|AVF02264.1\|58840_60763_-\|protelomerase	gnl\|CDD\|374724	pfam16684, Telomere_res, Telomere resolvase. Telomere resolvase (protelomerase) catalyzes the conversion of linear double-stranded DNA into hairpin telomeres.	4.062e-14
CP026760.1\|AYN07492.1\|64089_64566_-\|host-cell-division-inhibitor-Icd-like-protein	gnl\|CDD\|371132	pfam10554, Phage_ASH, Ash protein family. This family was identified by Iyer and colleagues. It includes the Ash protein from bacteriophage P4.	0.000486602

>CP026760.1|AVF02264.1|58840_60763_-|protelomerase
MRKVKIGELINSLVNEVEAIDASDRPQGDKTKKIKAAALKYKNALFNDKRKFRGEGLKKRISPNTFNAYMTRARKRFDDKLHHNFEKNIVRLSEKYPLYSEELSSWLSMPAASIRQNMSNLQTKLKSIMHLAEELSNIKIGARNSEAKLNKLANKYPEWKFAISDLNSEDWKDNRDHLYKLFQQGSSLLGELNNLKVNHEVLYHLQLSSAERTSIQQRWSDVLSNKKRNVVVIDYPRYMQAIYNIINSPISSFDLTTRRGMAPLAFALAALSGRRMIEIMLQGEFSVAGKYTVNFSGQAKKRSEDNNLSREIYTLCDAKLFVKLIYELRSCPAALDFEELLKGYGENDTRPGNGRVTAILSTAFNPWVKKFLSDDRRVYKDSRAIYARIAYEMFFRVDPRWKNVDEDVFFMEILGHDDENTQLHYKQFKLANFSRTWRPDVGEENTRLAALQKLDSMMPDFAKGDAGVRIHETVKQLVEQDPSIKITNSTLRPFNFSTRLIPRYLEFAADALGQFVGENGQWQLKDEAPAIVLPDEEIIEPIDDADLDDGDQEDETLDDDEIEVDESEGEELEEADDAEEAEEAEQEEKHPGKPNFKAPRDNGDGTYMVEFEFDGRHYAWSGAAGNRVEAMQSAWSAYFK
>CP026760.1|AVF02263.1|58006_58786_+|hypothetical-protein
MNALSVFSFQESHPVRVVLVNGEPWFYASDICRAIDIANHRDAVRKLDEDEKGVGSTDTPGGEQESVIISESGLYTLILRCRDAVKQGTTAWRFRKWVTNEVLPAIRKSGEYSYVEPAPKSAGEPLDWRQKEELRGLINDIAQSFRYHNAWKSGVWLALRRACRNPSPNPITVDDLPAITAELRRILTSAETALDNMRAYEREFLREVVRGARRSVSREELSIIDLGSEVEKVLPAHFELAINKLEALSTKLEAPAVSS
>CP026760.1|AVF02262.1|57779_58010_+|hypothetical-protein
MNQVQLNTQGLLESIEERLAQIEALVSSAHRTISSYEASLYMQEAAELLQVARELVQEARSCSSSLSAQLTAREAK
>CP026760.1|AVF02261.1|57618_57783_+|host-cell-division-inhibitor-Icd-like-protein
MFKFKFAAICRTDKKSHIHHLSTIASSEREARRQFASRFVLVLSARIRVSGVAA
>CP026760.1|AYN07491.1|57021_57222_+|hypothetical-protein
MPCRVKQDEVVMGEATIMQTLRYQALQRAIGELMAARETMRLEENGEYDPLDKVIQDCITMLKDNM
>CP026760.1|AVF02260.1|56661_57012_+|hypothetical-protein
MIYRRGWVPVLFRHELERKLKEQGFDNWKEICNFLCGEGDYYAESAKMPEQYDYQVVDNTKWMASRDATFWQRLNRLWFVPLYLLTIPFQWLIRGRMGFETTSKTGAFFSRLTGLK
>CP026760.1|AVF02259.1|56368_56665_+|hypothetical-protein
MAKDIDVLLEQQADQMTAVLKSHASHIESMLAQHRFQVAQLALHNSPEPFVREVFNHLRDRLVQVTINEAGLADAEDARYLLRILDRMELSALEGKPL
>CP026760.1|AVF02258.1|52371_56376_+|origin-of-replication-binding-family-protein
MTLQEFYADRFGSDPYSLLEAARDELSELARMAGINWTACADNIQLNPRGGEERYSKYNGQAPEALEKSLKGRVEIYSRKEQHKSGISYPFVNFVQKGHDEGSWSGFSFLFSEYRRDQQRNHATVVAQPAEELARIERQAEARKRRLEQQRINDLKNNQLEHERLLGWLAFHNAWEHAPAEDGSWPYAVKKGIRDVFSACDIRRVTSHDNAKWSRGPTTYMAIPLAHLDGRKDGRIVGWQRIDQRGGKFQTSAITSGDFVGSCFVIGDLKGAQNVAVVEGFATGASVWLATRKDPKKRFDAVVVAVAANNMIHVVEQLVNMYPAAKITCALDNDRKSSAEGKGNTGLRTGFDIVSKFSGIKCVYPTFEDDPHLECSDFNDLHRLRGLRETCRQLFAKGNRLSTSTDLLTLTLNKLKTAKCDNRRTFAKELLSAVDIGMLTCPVPNSPSDLFNMFCIVLRDMGLESVYRATVKDHIARRLNRKCRTAQAPRSFSERITDPNKRPQHITYKRFETSVMTDEILQYVQQLQGIVIVRAGMGSGKSTGLLRPLMHNAERGVSVAHRVSLIGGLWEMMTEQKGTKADILHYQDPGYQEMAPYASKLTICINSIVKGCWQPLMRQHDYFGFDEATQGLRAVLSGRAMENPVAVFNTLIDALARTELHPIMVDADANDLLVDLAELAMKRREEMGLPAWLQIHVIELPVDVRNRETGEPIRVFYTEKDRIMTEVIKAVELGEKIMLATDSSTFAEDVTATLRQRYPEKKFLCVNQKSKPEPEVEEFTNKPKKMVKKYDGLIYSPSISSGVSIEQKHFDRHFGMFCGEVVPSDAIQMLRRDRTAKEFIIGFDKVRARRETDPQKIERAFVQALLATAGMNGELTDVVFDGDRISMGVANTDFTRMKIKAAAIEASARNDYASNMICIMHSDGYKVAPLASDELANSVGKELRKEAREIVWEQTLDLHLNIETPSESEREAILKKRALTLEEQAKLVRWDIEHELKLPVNEDNLKFYFDGARDKVRRYETMLLDEVTARRFDREESAINFTYAFRQTGQWQYFTATAMTREQADEAFQAKHPGITDYKVKSTPAVEVGMRGFYGLKSTVLRQYFIDCGIDPETMTGEATQASMKYARDKLMTTERRDLLNNVLRIGGFMTPKGKPKVPEALFKTICESLGLKTDKRRARDGDKRPTIRFVDQDSAAFMMDILANRQDDGLSLQLRKAEKAATEVDHGLDLNIYMDHKTRSTNGDDLDAPHSVITEALAELPVPVPETWALTALSDDELATMTTWSPASIAMTFASLYLTEFMDRLSSNELRRLREYITGTATGGYDAQEAFYG
>CP026760.1|AVF02257.1|51512_52121_+|XRE-family-transcriptional-regulator
MINRMKTRGERLKARRLELKMTLKQVAESVGISLPGVQNLERGDVMPSLEIGLALAKCLRKPVQWILFGTESDPDRVPVIGTTESGPDSDWQPGEPANTERFLPFVSQRNTVYALTVGNQIQHNYQPGDVILADSTLTPVPGEDVLVCDNGGKISIQRLARFDDEHYYLDGANSQRVIHEKSDLQFVHQIVGTIKSFMVEGR
>CP026760.1|AVF02256.1|51219_51432_-|hypothetical-protein
MKPEELIRHFGDVEKAAAGVGVTPGAVYQWLAAGEIPPLRQSDIEVRTAYKLKSDFTVKRVSKDGSDYGT
>CP026760.1|AVF02265.1|63120_63900_-|hypothetical-protein
MNALSVFSFQESHPVRVVLVNGEPWFYASDICRAIDIANHRDAVRKLDEDEKGVGSTDTPGGEQESVIISESGLYTLILRCRDAVKQGTTAWRFRKWVTNEVLPAIRKSGEYSYVEPAPKSAGEPLDWRQKEELRGLINDIAQSFRYHNAWKSGVWLALRRACRNPSPNPITVDDLPAITAELRRILTSAETALDNMRAYEREFLREVVRGARRSVSREELSIIDLGSEVEKVLPAHFELAINKLEALSTKLEAPAVSS
>CP026760.1|AVF02266.1|63896_64127_-|hypothetical-protein
MNQVQLNTQGLLESIEERLAQIEALVSSAHRTISSYEASLYMQEAAELLQVARELVQEARSCSSSLSAQLTAREAK
>CP026760.1|AYN07492.1|64089_64566_-|host-cell-division-inhibitor-Icd-like-protein
MDVRCVLAVKLARCSKICSRASQSRISKRRTTRASVFFCAYACAYPIMVAQAGQPFGWPVSFGPVLRTPSGLPPLKRFATLVVAPITKPECAPCSNSSSPAICRTDKKSHIHHLSTIASSEREARRQFASRFVLVLSARIRLAGWPHESGAVKHPGPA
>CP026760.1|AVF02267.1|64892_65243_-|hypothetical-protein
MIYRRGWVPVLFRHELERKLKEQGFDNWKEICNFLCGEGDYYAESAKMPEQYDYQVVDNTKWMASRDATFWQRLNRLWFVPLYLLTIPFQWLIRGRMGFETTSKTGAFFSRLTGLK
>CP026760.1|AVF02268.1|65239_65449_-|hypothetical-protein
MLAQHRFQVAQLALHNSPEPFVREVFNHLRDRLVQVTINEAGLADAEDARYLLRILDRMELSALEGKPL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	CP026760.1	60818-60849	0	1.0

1. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to position: 60818-60849, mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP026760	Klebsiella aerogenes strain AR_0062 plasmid unnamed4	60818-60849	0	1.0
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP026760	Klebsiella aerogenes strain AR_0062 plasmid unnamed4	61060-61091	0	1.0
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP014747	Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed	22667-22698	0	1.0
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	CP038007	Klebsiella phage 020009, complete genome	28-59	0	1.0
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP028794	Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence	11803-11834	1	0.969
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	MT090961	Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence	54750-54781	1	0.969
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP042508	Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence	90250-90281	10	0.688
CP026760_1	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	NZ_CP040893	Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence	72763-72794	10	0.688

1. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

2. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP026760 (Klebsiella aerogenes strain AR_0062 plasmid unnamed4) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

3. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP014747 (Klebsiella aerogenes strain FDAARGOS_139 plasmid unnamed) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

4. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to CP038007 (Klebsiella phage 020009, complete genome) position: , mismatch: 0, identity: 1.0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
********************************

5. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP028794 (Klebsiella pneumoniae strain WCHKP040035 plasmid p1_040035, complete sequence) position: , mismatch: 1, identity: 0.969

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttatttgtg	Protospacer
*************************.******

6. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to MT090961 (Klebsiella pneumoniae strain KP18-2079 plasmid pKP18-2079_54kb, complete sequence) position: , mismatch: 1, identity: 0.969

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttatttgtg	Protospacer
*************************.******

7. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP042508 (Leclercia adecarboxylata strain E1 plasmid pE1_003, complete sequence) position: , mismatch: 10, identity: 0.688

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
attgcttcgtgattaatcattctttgttctcc	Protospacer
. * .******** ****.*********. .

8. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to NZ_CP040893 (Leclercia adecarboxylata strain Z96-1 plasmid pZ96-1_2, complete sequence) position: , mismatch: 10, identity: 0.688

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
attgcttcgtgattaatcattctttgttctcc	Protospacer
. * .******** ****.*********. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

732 : 63900

Klebsiella_phage(87.5%)

head,capsid,tail,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF02201.1\|732_1467_+	hypothetical protein	A0A0P0IKE4	Klebsiella_phage	2.6e-19	47.9
AVF02202.1\|1408_1723_+	hypothetical protein	A0A0P0IKE4	Klebsiella_phage	5.1e-09	48.1
AVF02203.1\|1641_2037_+	hypothetical protein	Q6UAW1	Klebsiella_phage	5.4e-08	32.8
AVF02204.1\|2036_3152_+	hypothetical protein	A0A0P0IKE4	Klebsiella_phage	1.2e-36	40.8
AVF02205.1\|3105_3522_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	6.5e-20	42.6
AVF02206.1\|4022_4631_+	hypothetical protein	A0A1X7QGJ8	Escherichia_phage	1.5e-33	38.2
AVF02207.1\|4639_5776_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	5.1e-35	36.9
AVF02208.1\|5848_6826_-	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	3.6e-170	95.3
AVF02209.1\|6828_7992_-	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	4.5e-228	99.7
AVF02210.1\|9026_10190_+	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	4.5e-228	99.7
AVF02211.1\|10192_11170_+	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	3.6e-170	95.3
AVF02212.1\|11242_12379_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	5.1e-35	36.9
AVF02213.1\|12387_12996_-	hypothetical protein	A0A1X7QGJ8	Escherichia_phage	1.5e-33	38.2
AVF02214.1\|13496_22817_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	44.3
AVF02215.1\|22883_23477_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	1.8e-76	74.6
AVF02216.1\|23530_23878_-	hypothetical protein	NA	NA	NA	NA
AVF02217.1\|23910_24621_-	peptidase P60	Q6UAW4	Klebsiella_phage	9.7e-141	93.6
AVF02218.1\|24622_25378_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	5.9e-136	87.6
AVF02219.1\|25374_25713_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	3.6e-61	95.5
AVF02269.1\|25712_29060_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	91.7
AVF02270.1\|29059_29278_-	hypothetical protein	Q6UAW9	Klebsiella_phage	3.4e-36	97.2
AVF02220.1\|29298_29667_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-54	91.8
AVF02221.1\|29730_30198_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	9.7e-81	96.8
AVF02222.1\|30232_30634_-	hypothetical protein	Q6UAX1	Klebsiella_phage	7.5e-66	99.2
AVF02223.1\|30630_31020_-	hypothetical protein	Q6UAX2	Klebsiella_phage	3.3e-66	96.9
AVF02224.1\|31000_31339_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	6.4e-58	97.3
AVF02225.1\|31335_31653_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	2.0e-45	90.8
AVF02226.1\|31633_32092_-	hypothetical protein	Q6UAX5	Klebsiella_phage	3.2e-44	89.5
AVF02227.1\|32158_33445_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	4.2e-235	99.3
AVF02228.1\|33520_34441_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	6.5e-137	81.4
AVF02229.1\|34478_35744_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	2.4e-235	95.7
AVF02230.1\|35743_35923_-	hypothetical protein	Q6UAX9	Klebsiella_phage	4.7e-20	88.1
AVF02231.1\|35916_37626_-\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.1
AVF02232.1\|37660_38095_-\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	1.6e-69	89.6
AVF02233.1\|38226_38427_-	hypothetical protein	Q6UAR8	Klebsiella_phage	1.4e-12	84.8
AVF02234.1\|38453_38636_-	hypothetical protein	NA	NA	NA	NA
AVF02235.1\|39347_39779_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.4e-33	53.2
AVF02236.1\|39775_40090_-	hypothetical protein	Q6UAS1	Klebsiella_phage	3.1e-06	42.2
AVF02237.1\|40086_40449_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	5.4e-63	93.3
AVF02238.1\|40448_41174_-	hypothetical protein	Q6UAS3	Klebsiella_phage	2.7e-98	78.0
AVF02239.1\|42067_42538_-	hypothetical protein	Q6UAS7	Klebsiella_phage	4.2e-60	79.5
AVF02240.1\|42554_43046_-	hypothetical protein	Q6UAS8	Klebsiella_phage	2.7e-81	89.0
AVF02241.1\|43042_43354_-	hypothetical protein	Q6UAS9	Klebsiella_phage	2.0e-45	91.1
AVF02242.1\|43412_44474_-	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	4.2e-172	93.2
AVF02243.1\|44744_44972_-	winged helix-turn-helix domain-containing protein	Q6UAT1	Klebsiella_phage	5.4e-29	82.7
AVF02271.1\|44981_45203_-	hypothetical protein	O64358	Escherichia_phage	4.3e-31	84.9
AVF02244.1\|45372_45681_+	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.0e-46	94.2
AVF02245.1\|45680_45968_+	XRE family transcriptional regulator	Q6UAT4	Klebsiella_phage	4.9e-43	94.7
AVF02246.1\|46014_46218_-	hypothetical protein	Q6UAT5	Klebsiella_phage	5.9e-19	76.6
AVF02247.1\|46321_46549_-	hypothetical protein	Q6UAT6	Klebsiella_phage	7.6e-23	77.5
AVF02248.1\|46569_46896_-	hypothetical protein	Q6UAT7	Klebsiella_phage	4.3e-51	94.4
AVF02249.1\|46888_47140_-	hypothetical protein	A0A1B1W253	Salmonella_phage	4.2e-06	37.7
AVF02250.1\|48038_48332_-	hypothetical protein	Q6UAT9	Klebsiella_phage	6.5e-43	86.6
AVF02251.1\|48331_49012_-	DNA cytosine methyltransferase	Q6UAU0	Klebsiella_phage	6.0e-132	94.7
AVF02252.1\|49012_49345_-	hypothetical protein	Q6UAU1	Klebsiella_phage	4.6e-45	85.5
AVF02253.1\|49472_50081_-	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	2.3e-98	88.1
AVF02254.1\|50266_50512_-	hypothetical protein	A0A2I6TCB2	Escherichia_phage	3.9e-33	72.8
AVF02255.1\|50492_51230_-	phage antitermination protein	Q6UAU4	Klebsiella_phage	8.5e-132	94.7
AVF02256.1\|51219_51432_-	hypothetical protein	Q6UAU5	Klebsiella_phage	2.1e-30	94.3
AVF02257.1\|51512_52121_+	XRE family transcriptional regulator	Q6UAU6	Klebsiella_phage	6.4e-109	97.0
AVF02258.1\|52371_56376_+	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.9
AVF02259.1\|56368_56665_+	hypothetical protein	NA	NA	NA	NA
AVF02260.1\|56661_57012_+	hypothetical protein	O64343	Escherichia_phage	1.3e-50	77.6
AYN07491.1\|57021_57222_+	hypothetical protein	NA	NA	NA	NA
AVF02261.1\|57618_57783_+	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
AVF02262.1\|57779_58010_+	hypothetical protein	NA	NA	NA	NA
AVF02263.1\|58006_58786_+	hypothetical protein	Q6UAV5	Klebsiella_phage	1.9e-126	89.2
AVF02264.1\|58840_60763_-	protelomerase	Q6UAV6	Klebsiella_phage	2.3e-309	90.0
AVF02265.1\|63120_63900_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.9e-126	89.2

Anti-CRISPR protein detection

Acr_ID: CP026760.1|AVF02249.1|46888_47140_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP026760.1|AVF02249.1|46888_47140_-|hypothetical-protein

46888_47140_-

83 aa aa

732-63900

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP026760_1	Orphan	1.1\|61060\|32\|CP026760\|CRISPRCasFinder	61060-61091	32	60849-60818	0

1. spacer 1.1|61060|32|CP026760|CRISPRCasFinder matches to CP026760 position: 60849-60818, mismatch: 0

gatttttcgtgataaatcgttctttgtttgtg	CRISPR spacer
gatttttcgtgataaatcgttctttgtttgtg	Protospacer
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Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026756

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026760

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information