CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026812	Shigella flexneri strain 64-5500 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP026811	Shigella flexneri strain 64-5500 chromosome, complete genome	3 crisprs	NA	0	2	0	0

Cas Category Instructions

Results visualization

1. CP026811

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CRISPR-Cas detection and classification

Crispr_ID: CP026811_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026811_1

2345396-2345527

Orphan

Consensus_repeat	Method
AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026811_1

>merge|CP026811|1|2345396-2345527|CRISPRCasFinder
AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGAGGCAGCGCGTGAGCGCATTCAGCCCGCCTCGCCTGAGCAGCGCCAGGCAGTCCGCGAGAAAATGCAGACTAACCCACAGATCCAGCAGCGAAGAGA

>CP026811|1|1|2345396-2345527|CRISPRCasFinder
AATGCAGACTAACCCGCAGATCCAGCAGCGAAGAGA	GGCAGCGCGTGAGCGCATTCAGCCCGCCTCGCCTGAGCAGCGCCAGGCAGTCCGCGAGAA
AATGCAGACTAACCCACAGATCCAGCAGCGAAGAGA

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Crispr_ID: CP026811_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026811_2

2409736-2409851

Orphan

Consensus_repeat	Method
AACGCCTGATGCGACGCTGACGCGTCTTATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026811_2

>merge|CP026811|2|2409736-2409851|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTCAACGCCTGATGCGACGCTGGCGCGTCTTATC

>CP026811|2|2|2409736-2409851|CRISPRCasFinder
AACGCCTGATGCGACGCTGACGCGTCTTATC	TGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCATTC
AACGCCTGATGCGACGCTGGCGCGTCTTATC

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Crispr_ID: CP026811_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026811_3

2492037-2492185

Orphan

Consensus_repeat	Method
TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTGTGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026811_3

>merge|CP026811|3|2492037-2492185|CRISPRCasFinder
TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTGTGCGCCAACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCGGCACAAACCTGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTATGCGCC

>CP026811|3|3|2492037-2492185|CRISPRCasFinder
TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTGTGCGCC	AACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGTTCGGCACAAACC
TGTAGGCATGATAAGACGCGACAAGCGTCGCATCAGGCATTATGCGCC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026811_2	2.1\|2409767\|54\|CP026811\|CRISPRCasFinder	2409767-2409820	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4158-4210	5	0.906
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4157-4209	5	0.906
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115798-115850	5	0.906
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4157-4209	5	0.906
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4157-4209	5	0.906
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229187-229239	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229288-229340	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239681-239733	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239782-239834	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230593-230645	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230694-230746	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211563-211615	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211664-211716	8	0.849
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7435-7487	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84259-84311	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229389-229441	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239883-239935	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230795-230847	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211765-211817	9	0.83
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229086-229138	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194192-194244	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239580-239632	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204686-204738	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230492-230544	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195520-195572	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211462-211514	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176475-176527	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31292-31344	10	0.811
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27384-27436	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	87-139	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	86-138	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	86-138	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	86-138	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40384-40436	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397091-397143	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27987-28039	11	0.792
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18288-18340	11	0.792
CP026811_2	2.1\|2409767\|54\|CP026811\|CRISPRCasFinder	2409767-2409820	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82835-82887	12	0.774
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386501-386553	12	0.774
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	106-158	12	0.774
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33062-33114	12	0.774
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141009-141061	12	0.774
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27483-27535	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6687-6739	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83533-83585	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3315-3367	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3314-3366	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3314-3366	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3314-3366	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	170852-170904	13	0.755
CP026811_3	3.1\|2492085\|53\|CP026811\|CRISPRCasFinder	2492085-2492137	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313585-313637	13	0.755

1. spacer 2.1|2409767|54|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
tggcctacacgctgcgattttgtaggccggataagcaaagcgcatccggcattg	Protospacer
*****************************************************

2. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 5, identity: 0.906

aactgccggatgcggcgtgaacgccttatccggcctacggttc-ggcacaaacc	CRISPR spacer
aactgccggatgcggcgtgaacgccttatccgtcctaccgttcaggcacaagt-	Protospacer
******************************** ***** **** *******..

3. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 5, identity: 0.906

aactgccggatgcggcgtgaacgccttatccggcctacggttc-ggcacaaacc	CRISPR spacer
aactgccggatgcggcgtgaacgccttatccgtcctaccgttcaggcacaagt-	Protospacer
******************************** ***** **** *******..

4. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.906

aactgccggatgcggcgtgaacgccttatccggcctacggttc-ggcacaaacc	CRISPR spacer
aactgccggatgcggcgtgaacgccttatccgtcctaccgttcaggcacaagt-	Protospacer
******************************** ***** **** *******..

5. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 5, identity: 0.906

aactgccggatgcggcgtgaacgccttatccggcctacggttc-ggcacaaacc	CRISPR spacer
aactgccggatgcggcgtgaacgccttatccgtcctaccgttcaggcacaagt-	Protospacer
******************************** ***** **** *******..

6. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 5, identity: 0.906

aactgccggatgcggcgtgaacgccttatccggcctacggttc-ggcacaaacc	CRISPR spacer
aactgccggatgcggcgtgaacgccttatccgtcctaccgttcaggcacaagt-	Protospacer
******************************** ***** **** *******..

7. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*************************************** * * **. .**.

8. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaat	Protospacer
.*************************************** * ***.*.*.

9. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*************************************** * * **. .**.

10. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaat	Protospacer
.*************************************** * ***.*.*.

11. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*************************************** * * **. .**.

12. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaat	Protospacer
.*************************************** * ***.*.*.

13. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*************************************** * * **. .**.

14. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacgggt-ggcgcgagaat	Protospacer
.*************************************** * ***.*.*.

15. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
aattgccggatgcggcgtgaacgccttatccggcctacggttgagtgcagttt	Protospacer
**.*************************************** .*..**. ..

16. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
aattgccggatgcggcgtgaacgccttatccggcctacggttgagtgcagttt	Protospacer
**.*************************************** .*..**. ..

17. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtaaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*****************.********************* * * **. .**.

18. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtaaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*****************.********************* * * **. .**.

19. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtaaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*****************.********************* * * **. .**.

20. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.83

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
gactgccggatgcggcgtaaacgccttatccggcctacggatggcgcgggaat-	Protospacer
.*****************.********************* * * **. .**.

21. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgtgagaat	Protospacer
.*************************************** * *    *.* .

22. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
cactgccggatgcggcgtggacgccttatccggcctacgagt-ggcgcgagaat	Protospacer
 ******************.*******************. * ***.*.*.

23. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgtgagaat	Protospacer
.*************************************** * *    *.* .

24. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
cactgccggatgcggcgtggacgccttatccggcctacgagt-ggcgcgagaat	Protospacer
 ******************.*******************. * ***.*.*.

25. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgtgagaat	Protospacer
.*************************************** * *    *.* .

26. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
cactgccggatgcggcgtggacgccttatccggcctacgagt-ggcgcgagaat	Protospacer
 ******************.*******************. * ***.*.*.

27. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
gactgccggatgcggcgtgaacgccttatccggcctacggatggcgtgagaat	Protospacer
.*************************************** * *    *.* .

28. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
cactgccggatgcggcgtggacgccttatccggcctacgagt-ggcgcgagaat	Protospacer
 ******************.*******************. * ***.*.*.

29. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.811

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-	CRISPR spacer
aaatgccggatgcggcgtaaacgccttatccggcctac-atttggcaacggctg	Protospacer
** ***************.******************* .**.****  ..*.

30. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
aaccgccggatgcggcgtgaacgccttatccggcctacgggtgagtgcggttt	Protospacer
***.************************************ * .*..*.. ..

31. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
tcaggtcggatgcggcgtgaacgcattattcggcctacggttcgcgtacagat-	Protospacer
    *.****************** ****.************** *.***.*.

32. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
tcaggtcggatgcggcgtgaacgcattattcggcctacggttcgcgtacagat-	Protospacer
    *.****************** ****.************** *.***.*.

33. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
tcaggtcggatgcggcgtgaacgcattattcggcctacggttcgcgtacagat-	Protospacer
    *.****************** ****.************** *.***.*.

34. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
tcaggtcggatgcggcgtgaacgcattattcggcctacggttcgcgtacagat-	Protospacer
    *.****************** ****.************** *.***.*.

35. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
ttttgccggatgcggcgtaaacgccttatccggcctacggtttggtgcgagtg	Protospacer
  .***************.***********************.**..*.*..

36. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc----	CRISPR spacer
aattgccggatgcggcgtaaacgccttatccggcctaca----tggataaatcattg	Protospacer
**.***************.*******************.     * *.***.*

37. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aaatgccggatgcggcgtgaacgccttatccggcctacg--------cacactatatcag	Protospacer
** ************************************        ** **.

38. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.792

aactgccggatgcggcgtgaacgccttatccggcctacggttcg-gcacaaacc	CRISPR spacer
tcaggtcggatgcggcgtgaacgcattattcggcctacggttcgcgtacagat-	Protospacer
    *.****************** ****.************** *.***.*.

39. spacer 2.1|2409767|54|CP026811|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

tggcctacacgct-----gcgattttgtaggccggataagcaaagcgcatccggcattc	CRISPR spacer
-----tacaaattaattcgcggtattgtaggccggataagcaaagcgcatccggcagta	Protospacer
     **** ..*     ***.* ******************************** *

40. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
aaatgccggatgcggcgtgaacgccttatccggcctacaaaccaagaaatttc	Protospacer
** ***********************************.. .*.. * *  .*

41. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aagtgccggatgcggcgtaaacgccttatccggcctacg-------ccagacttacttaa	Protospacer
** ***************.********************        **.**.

42. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 12, identity: 0.774

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
gatcgccggatgcggcgtgaacgccttatccgtcctacggttctgtgctcggg	Protospacer
.*..**************************** ********** *..*  .

43. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.774

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
ctttgccggatgcggcgtgaacgcctgatccggcctacggt-------aagcctgattag	Protospacer
  .*********************** **************       **.**

44. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.774

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
ctttgccggatgcggcgtgaacgcctgatccggcctacggt-------aagcctgattag	Protospacer
  .*********************** **************       **.**

45. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aaccgccagatgcggcgtgaacgccttatccggcctaca---------aaatcgtctctt	Protospacer
***.***.******************************.         ***.*

46. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtgaatgccttatccgtcctaca---------aaatcgtctctt	Protospacer
*********************.********** *****.         ***.*

47. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtgaatgccttatccgtcctaca---------aaatcgtctctt	Protospacer
*********************.********** *****.         ***.*

48. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtaaacgccttatccgtcctaca---------aaatcgtctctt	Protospacer
******************.************* *****.         ***.*

49. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtaaacgccttatccgtcctaca---------aaatcgtctctt	Protospacer
******************.************* *****.         ***.*

50. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtaaacgccttatccgtcctaca---------aaatcgtctctt	Protospacer
******************.************* *****.         ***.*

51. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc-------	CRISPR spacer
aactgccggatgcggcgtaaacgccttatccgtcctaca---------aaatcgtctctt	Protospacer
******************.************* *****.         ***.*

52. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacgg---------ttcggcacaaa	CRISPR spacer
cactgtcggatgcggcgtgaacgccttatccgacctacgggtagtgcgttttg-------	Protospacer
 ****.**************************.*******         **.*

53. spacer 3.1|2492085|53|CP026811|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.755

aactgccggatgcggcgtgaacgccttatccggcctacggttcggcacaaacc	CRISPR spacer
aaatgccggatgcggcgtaaacgccttatccggcctacaaaatcgtgctaatt	Protospacer
** ***************.*******************..  . *..* **..

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage