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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026825 Shigella dysenteriae strain ATCC 9751 chromosome, complete genome 2 crisprs NA 0 2 0 0

Results visualization

1. CP026825
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026825_1 1531380-1531528 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026825_2 1613819-1613934 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026825_2 2.1|1613850|54|CP026825|CRISPRCasFinder 1613850-1613903 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165464 1 0.981
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229187-229239 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229288-229340 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239681-239733 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239782-239834 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230593-230645 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230694-230746 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211563-211615 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211664-211716 9 0.83
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7435-7487 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84259-84311 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229389-229441 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239883-239935 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230795-230847 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211765-211817 10 0.811
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229086-229138 11 0.792
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239580-239632 11 0.792
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230492-230544 11 0.792
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211462-211514 11 0.792
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27384-27436 12 0.774
CP026825_2 2.1|1613850|54|CP026825|CRISPRCasFinder 1613850-1613903 54 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 72431-72484 12 0.778
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 106-158 13 0.755
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 MG065691 UNVERIFIED: Campylobacter phage A11a, complete genome 33062-33114 13 0.755
CP026825_1 1.1|1531428|53|CP026825|CRISPRCasFinder 1531428-1531480 53 MG065686 UNVERIFIED: Campylobacter phage A18a, complete genome 141009-141061 13 0.755

1. spacer 2.1|1613850|54|CP026825|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981 

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

3. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

4. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

5. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

6. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

7. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

8. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

9. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * **.************************************.

10. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ****.**********************************.**

11. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ****.**********************************.**

12. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * **.******************.*****************.

13. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * **.******************.*****************.

14. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * **.******************.*****************.

15. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * **.******************.*****************.

16. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * **.************************************.

17. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * **.************************************.

18. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * **.************************************.

19. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * **.************************************.

20. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.774 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaaccgcactcacccgtaggccggataaggcgttcacgccgcatccggcggtt	Protospacer
.. ..*..*. * **.*********************************.***

21. spacer 2.1|1613850|54|CP026825|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778 

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

22. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.755 

ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatc	Protospacer
  .  *..* *****.**** ****************************..*.

23. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 13, identity: 0.755 

-------ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ***.********** ***********************.

24. spacer 1.1|1531428|53|CP026825|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 13, identity: 0.755 

-------ggtttgtgccgaaccataggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ***.********** ***********************.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage