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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP026834 Shigella dysenteriae strain ATCC 49347 chromosome, complete genome 2 crisprs NA 0 2 0 0
CP026835 Shigella dysenteriae strain ATCC 49347 plasmid unnamed, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP026834
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026834_1 3491000-3491148 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP026834_2 3573462-3573577 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP026834_2 2.1|3573493|54|CP026834|CRISPRCasFinder 3573493-3573546 54 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 165411-165464 1 0.981
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4158-4210 5 0.906
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4157-4209 5 0.906
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 115798-115850 5 0.906
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4157-4209 5 0.906
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4157-4209 5 0.906
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229187-229239 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229288-229340 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239681-239733 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239782-239834 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230593-230645 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230694-230746 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211563-211615 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211664-211716 8 0.849
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 7435-7487 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 84259-84311 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229389-229441 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239883-239935 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230795-230847 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211765-211817 9 0.83
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229086-229138 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194192-194244 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239580-239632 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204686-204738 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230492-230544 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195520-195572 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211462-211514 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176475-176527 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31292-31344 10 0.811
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27384-27436 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 87-139 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 86-138 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 86-138 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 86-138 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40384-40436 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 397091-397143 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP044307 Escherichia coli strain C27A plasmid pC27A-2, complete sequence 18288-18340 11 0.792
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 82835-82887 12 0.774
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 386501-386553 12 0.774
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 106-158 12 0.774
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 27987-28039 12 0.774
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 MG065691 UNVERIFIED: Campylobacter phage A11a, complete genome 33062-33114 12 0.774
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 MG065686 UNVERIFIED: Campylobacter phage A18a, complete genome 141009-141061 12 0.774
CP026834_2 2.1|3573493|54|CP026834|CRISPRCasFinder 3573493-3573546 54 NZ_CP048385 Citrobacter freundii strain 62 plasmid p6_C, complete sequence 72431-72484 12 0.778
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 313585-313637 13 0.755
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 170852-170904 14 0.736
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27483-27535 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP044147 Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2 6687-6739 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 CP044351 Escherichia coli strain 194195 plasmid p194195_1, complete sequence 83533-83585 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3315-3367 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3314-3366 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3314-3366 15 0.717
CP026834_1 1.1|3491048|53|CP026834|CRISPRCasFinder 3491048-3491100 53 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3314-3366 15 0.717

1. spacer 2.1|3573493|54|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981 

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 5, identity: 0.906 

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

3. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 5, identity: 0.906 

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

4. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.906 

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

5. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 5, identity: 0.906 

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

6. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 5, identity: 0.906 

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

7. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

8. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

9. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

10. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

11. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

12. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

13. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

14. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

15. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 9, identity: 0.83 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ***************************************.**

16. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ***************************************.**

17. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

18. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

19. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

20. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.83 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

21. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

22. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

23. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

24. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

25. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

26. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

27. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

28. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

29. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.811 

-ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cagccgttgccaaa-tgtaggccggataaggcgtttacgccgcatccggcattt	Protospacer
 .*..  ****.** .*******************.*************** **

30. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaaccgcactcacccgtaggccggataaggcgttcacgccgcatccggcggtt	Protospacer
.. ..*..*. * ************************************.***

31. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

32. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

33. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

34. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

35. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cactcgcaccaaaccgtaggccggataaggcgtttacgccgcatccggcaaaa	Protospacer
 ..*.*..**.***********************.***************.

36. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792 

----ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
caatgatttatcc----atgtaggccggataaggcgtttacgccgcatccggcaatt	Protospacer
    *.***.* *     .*******************.***************.**

37. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.792 

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

38. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
gaaatttcttggtttgtaggccggataaggcgttcacgccgcatccggcattt	Protospacer
*.  * * ..*. ..*********************************** **

39. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774 

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ttaagtaagtctg-------gcgtaggccggataaggcgtttacgccgcatccggcactt	Protospacer
       .**.**        ********************.*************** **

40. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 12, identity: 0.774 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatc	Protospacer
  .  *..* ********** ****************************..*.

41. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.774 

--------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagt	CRISPR spacer
cctgatatagtgtg--------cgtaggccggataaggcgttcacgccgcatccggcatt	Protospacer
        .** **        ************************************ *

42. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.774 

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ************** ***********************.

43. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.774 

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ************** ***********************.

44. spacer 2.1|3573493|54|CP026834|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778 

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

45. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.755 

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aattagcacgattttgtaggccggataaggcgtttacgccgcatccggcattt	Protospacer
..** *..* .  ..*******************.*************** **

46. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.736 

ggtttgtgccgaa---------ccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
---------caaaacgcactacccgtaggtcggataaggcgttcacgccgcatccgacag	Protospacer
         *.**         *******.**************************.***

47. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggccggataaggcgttcacgccgcatctggcgg	Protospacer
         *.***         .******************************.***.*

48. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcattcacgccgcatccggcag	Protospacer
         *.***         .***** **********.*******************

49. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcattcacgccgcatccggcag	Protospacer
         *.***         .***** **********.*******************

50. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

51. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

52. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

53. spacer 1.1|3491048|53|CP026834|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 15, identity: 0.717 

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage