CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026839	Shigella dysenteriae strain ATCC 9752 chromosome, complete genome	6 crisprs	NA	0	5	0	0
CP026838	Shigella dysenteriae strain ATCC 9752 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. CP026839

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CRISPR-Cas detection and classification

Crispr_ID: CP026839_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_1

1085515-1085663

Orphan

Consensus_repeat	Method
GGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026839_1

>merge|CP026839|1|1085515-1085663|CRISPRCasFinder
GGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACAGGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTTGGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA

>CP026839|1|1|1085515-1085663|CRISPRCasFinder
GGCGCATAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA	GGTTTGTGCCGAACCGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAGTT
GGCGCACAATGCCTGATGCGACGCTTGTCGCGTCTTATCATGCCTACA

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Crispr_ID: CP026839_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_2

1176983-1177098

Orphan

Consensus_repeat	Method
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026839_2

>merge|CP026839|2|1176983-1177098|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTTGAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCAGATAAGACGCGTCAGCGTCGCATCAGGCGTT

>CP026839|2|2|1176983-1177098|CRISPRCasFinder
GATAAGACGCGCCAGCGTCGCATCAGGCGTT	GAATGCCGGATGCGCTTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCCA
GATAAGACGCGTCAGCGTCGCATCAGGCGTT

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Crispr_ID: CP026839_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_3

1240461-1240592

Orphan

Consensus_repeat	Method
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026839_3

>merge|CP026839|3|1240461-1240592|CRISPRCasFinder
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATTTTCTCGCGGACTGCCTGGCGCTGCTCAGGCGAGGCGGGCTGAATGCGCTCACGCGCTGCCTCTCTTCGCTGCTGGATCTGCGGGTTAGTCTGCATT

>CP026839|3|3|1240461-1240592|CRISPRCasFinder
TCTCTTCGCTGCTGGATCTGTGGGTTAGTCTGCATT	TTCTCGCGGACTGCCTGGCGCTGCTCAGGCGAGGCGGGCTGAATGCGCTCACGCGCTGCC
TCTCTTCGCTGCTGGATCTGCGGGTTAGTCTGCATT

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Crispr_ID: CP026839_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_4

1848284-1848419

Orphan

Consensus_repeat	Method
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026839_4

>merge|CP026839|4|1848284-1848419|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCTAGGCTCGGGACTTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCA

>CP026839|4|4|1848284-1848419|CRISPRCasFinder
CTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCA	CTGAATGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGTTCTAGGCTCGGGA
CTTGTAGGCCTGATAAGACGCGTCAGCGTCGCATCAGGCA

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Crispr_ID: CP026839_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_5

2222567-2222690

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026839_5

>merge|CP026839|5|2222567-2222690|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP026839|5|5|2222567-2222690|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

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Crispr_ID: CP026839_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026839_6

3636139-3636288

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP026839_6

>merge|CP026839|6|3636139-3636288|CRISPRCasFinder
GGAGTTCTACCGCAGGGGCGGGGAATTCTAAGTGATATCCATTATCGCATCCAGTGCGCCCGGTTTATCCCGCTGGCGCGGGGAACACGCAAAATCGGGTCGTGGAATTAAAAATAGTTTGCGGTTTATCCCCGCTGGCGCGGGGAACAC

>CP026839|6|6|3636139-3636288|CRISPRCasFinder
GGAGTTCTACCGCAGGGGCGGGGAATTC	TAAGTGATATCCATTATCGCATCCAGTGCGCC
CGGTTTATCCCGCTGGCGCGGGGAACAC	GCAAAATCGGGTCGTGGAATTAAAAATAGTTTGC
GGTTTATCCCCGCTGGCGCGGGGAACAC

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026839_2	2.1\|1177014\|54\|CP026839\|CRISPRCasFinder	1177014-1177067	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165411-165464	1	0.981
CP026839_5	5.1\|2222610\|38\|CP026839\|CRISPRCasFinder	2222610-2222647	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP026839_6	6.1\|3636167\|32\|CP026839\|CRISPRCasFinder	3636167-3636198	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	4	0.875
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4158-4210	5	0.906
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4157-4209	5	0.906
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115798-115850	5	0.906
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4157-4209	5	0.906
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4157-4209	5	0.906
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229187-229239	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229288-229340	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239681-239733	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239782-239834	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230593-230645	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230694-230746	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211563-211615	8	0.849
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211664-211716	8	0.849
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229387-229442	8	0.857
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239881-239936	8	0.857
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230793-230848	8	0.857
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211763-211818	8	0.857
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7435-7487	9	0.83
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84259-84311	9	0.83
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229389-229441	9	0.83
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239883-239935	9	0.83
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230795-230847	9	0.83
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211765-211817	9	0.83
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229185-229240	9	0.839
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239679-239734	9	0.839
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230591-230646	9	0.839
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211561-211616	9	0.839
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229086-229138	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194192-194244	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239580-239632	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204686-204738	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230492-230544	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195520-195572	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211462-211514	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176475-176527	10	0.811
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31292-31344	10	0.811
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229286-229341	10	0.821
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239780-239835	10	0.821
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230692-230747	10	0.821
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211662-211717	10	0.821
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27384-27436	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	87-139	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	86-138	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	86-138	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	86-138	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40384-40436	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397091-397143	11	0.792
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18288-18340	11	0.792
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229084-229139	11	0.804
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239578-239633	11	0.804
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230490-230545	11	0.804
CP026839_4	4.1\|1848324\|56\|CP026839\|CRISPRCasFinder	1848324-1848379	56	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211460-211515	11	0.804
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82835-82887	12	0.774
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386501-386553	12	0.774
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	106-158	12	0.774
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27987-28039	12	0.774
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33062-33114	12	0.774
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141009-141061	12	0.774
CP026839_2	2.1\|1177014\|54\|CP026839\|CRISPRCasFinder	1177014-1177067	54	NZ_CP048385	Citrobacter freundii strain 62 plasmid p6_C, complete sequence	72431-72484	12	0.778
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313585-313637	13	0.755
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	170852-170904	14	0.736
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27483-27535	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6687-6739	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83533-83585	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3315-3367	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3314-3366	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3314-3366	15	0.717
CP026839_1	1.1\|1085563\|53\|CP026839\|CRISPRCasFinder	1085563-1085615	53	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3314-3366	15	0.717

1. spacer 2.1|1177014|54|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 1, identity: 0.981

gaatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	CRISPR spacer
caatgccggatgcgctttgcttatccggcctacaaaatcgcagcgtgtaggcca	Protospacer
 *****************************************************

2. spacer 5.1|2222610|38|CP026839|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 6.1|3636167|32|CP026839|CRISPRCasFinder matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 4, identity: 0.875

taagtgatatccattatcgcatccagtgcgcc	CRISPR spacer
caagtgatgtccatcatcgcatccagtgcgtc	Protospacer
.*******.*****.***************.*

4. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 5, identity: 0.906

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

5. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 5, identity: 0.906

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

6. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.906

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

7. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 5, identity: 0.906

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

8. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 5, identity: 0.906

ggtttgtgcc-gaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-acttgtgcctgaacggtaggacggataaggcgttcacgccgcatccggcagtt	Protospacer
 ..******* **** ***** ********************************

9. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

10. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

11. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

12. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

13. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

14. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

15. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

16. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.849

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccacccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
 .**. .** * * ***************************************.

17. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.857

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtaaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ************************************* *   *** *****

18. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.857

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtaaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ************************************* *   *** *****

19. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.857

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtaaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ************************************* *   *** *****

20. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.857

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtaaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ************************************* *   *** *****

21. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 9, identity: 0.83

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ***************************************.**

22. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 9, identity: 0.83

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaactgcactcaaccgtaggccggataaggcgttcacgccgcatccggcaatt	Protospacer
.. .**..*. ***************************************.**

23. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.83

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

24. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.83

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

25. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.83

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

26. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.83

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attcccgcgccatccgtaggccggataaggcgtttacgccgcatccggcagtc	Protospacer
 .**. .** * * *********************.*****************.

27. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.839

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************.********************* *   *** *****

28. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.839

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************.********************* *   *** *****

29. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.839

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************.********************* *   *** *****

30. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.839

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgcgggaatt	Protospacer
 .** ***************.********************* *   *** *****

31. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

32. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

33. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

34. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

35. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

36. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

37. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
attctcacgccatccgtaggccggataaggcgttcacgccgcatccggcagtc	Protospacer
. *.*    * * ***************************************.

38. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.811

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-attctcgcgccactcgtaggccggataaggcgtccacgccgcatccggcagtg	Protospacer
 .**. .** * * .*******************.******************

39. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 10, identity: 0.811

-ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cagccgttgccaaa-tgtaggccggataaggcgtttacgccgcatccggcattt	Protospacer
 .*..  ****.** .*******************.*************** **

40. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt---ggcgcgagaatt	Protospacer
 .** ***************.********************* *   *** **.**

41. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt---ggcgcgagaatt	Protospacer
 .** ***************.********************* *   *** **.**

42. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt---ggcgcgagaatt	Protospacer
 .** ***************.********************* *   *** **.**

43. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.821

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacgggt---ggcgcgagaatt	Protospacer
 .** ***************.********************* *   *** **.**

44. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aaaccgcactcacccgtaggccggataaggcgttcacgccgcatccggcggtt	Protospacer
.. ..*..*. * ************************************.***

45. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

46. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

47. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

48. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

49. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cactcgcaccaaaccgtaggccggataaggcgtttacgccgcatccggcaaaa	Protospacer
 ..*.*..**.***********************.***************.

50. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.792

----ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
caatgatttatcc----atgtaggccggataaggcgtttacgccgcatccggcaatt	Protospacer
    *.***.* *     .*******************.***************.**

51. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.792

ggtttgtgc-cgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
-atctgtacgcgaaccgtaggccgaataatgcgttcacgccgcatccgacctga	Protospacer
 .*.***.* **************.**** ******************.*

52. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgtgagaatt	Protospacer
 .** ***************.********************* *   *** .*.**

53. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgtgagaatt	Protospacer
 .** ***************.********************* *   *** .*.**

54. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgtgagaatt	Protospacer
 .** ***************.********************* *   *** .*.**

55. spacer 4.1|1848324|56|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.804

ctgaatgccggatgcggcgtaaacgccttatccggcctacggttctaggctcggga---	CRISPR spacer
acgactgccggatgcggcgtgaacgccttatccggcctacggat---ggcgtgagaatt	Protospacer
 .** ***************.********************* *   *** .*.**

56. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
gaaatttcttggtttgtaggccggataaggcgttcacgccgcatccggcattt	Protospacer
*.  * * ..*. ..*********************************** **

57. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.774

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ttaagtaagtctg-------gcgtaggccggataaggcgtttacgccgcatccggcactt	Protospacer
       .**.**        ********************.*************** **

58. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 12, identity: 0.774

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
cccgagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgatc	Protospacer
  .  *..* ********** ****************************..*.

59. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.774

--------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagt	CRISPR spacer
cctgatatagtgtg--------cgtaggccggataaggcgttcacgccgcatccggcatt	Protospacer
        .** **        ************************************ *

60. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.774

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ************** ***********************.

61. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.774

-------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
ctaatcaggctt-------accgtaggccggatcaggcgttcacgccgcatccggcaaag	Protospacer
       **.**       ************** ***********************.

62. spacer 2.1|1177014|54|CP026839|CRISPRCasFinder matches to NZ_CP048385 (Citrobacter freundii strain 62 plasmid p6_C, complete sequence) position: , mismatch: 12, identity: 0.778

gaatgccggatgcgctttgcttatccggcctacaaaatcgc-----agcgtgtaggcca	CRISPR spacer
tactgccggatgcgctttgcttatccggcctacaataccgcgaattaatttgta-----	Protospacer
 * ******************************** *.***     *.. ****

63. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.755

ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcagtt	CRISPR spacer
aattagcacgattttgtaggccggataaggcgtttacgccgcatccggcattt	Protospacer
..** *..* .  ..*******************.*************** **

64. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.736

ggtttgtgccgaa---------ccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
---------caaaacgcactacccgtaggtcggataaggcgttcacgccgcatccgacag	Protospacer
         *.**         *******.**************************.***

65. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggccggataaggcgttcacgccgcatctggcgg	Protospacer
         *.***         .******************************.***.*

66. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcattcacgccgcatccggcag	Protospacer
         *.***         .***** **********.*******************

67. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcattcacgccgcatccggcag	Protospacer
         *.***         .***** **********.*******************

68. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

69. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

70. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

71. spacer 1.1|1085563|53|CP026839|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 15, identity: 0.717

---------ggtttgtgccgaaccgtaggccggataaggcgttcacgccgcatccggcag	CRISPR spacer
ggaagagacgattt---------tgtaggacggataaggcgtttacgccgcatccggcag	Protospacer
         *.***         .***** *************.****************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage