CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP026848	Weissella koreensis strain WiKim0080 plasmid pWKW_1, complete sequence	0 crisprs	NA	0
CP026849	Weissella koreensis strain WiKim0080 plasmid pWKW_2, complete sequence	0 crisprs	NA	0
CP026847	Weissella koreensis strain WiKim0080 chromosome, complete genome	0 crisprs	cas3,DEDDh,WYL,csa3,DinG	3

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

217491 : 274488

Oenococcus_phage(20.93%)

terminase,portal,capsid,tail,integrase,protease

attL 224197:224256|attR 268618:268692

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH74692.1\|217491_218235_-\|portal	portal protein	V9QKI8	Oenococcus_phage	4.2e-54	46.4
AVH74693.1\|218512_218875_-	hypothetical protein	NA	NA	NA	NA
AVH74694.1\|219590_219929_+	XRE family transcriptional regulator	E3W8B9	Leuconostoc_phage	1.4e-12	40.7
AVH74695.1\|220040_220382_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
AVH75815.1\|220436_220625_+	hypothetical protein	NA	NA	NA	NA
AVH75816.1\|220789_221206_+	hypothetical protein	A0A173G9H4	Propionibacterium_phage	7.2e-11	72.0
AVH74696.1\|221280_221619_+	hypothetical protein	NA	NA	NA	NA
AVH74697.1\|221996_222932_+	hypothetical protein	NA	NA	NA	NA
AVH74698.1\|223218_223398_+	hypothetical protein	NA	NA	NA	NA
AVH74699.1\|223394_224075_+\|integrase	site-specific integrase	P97010	Streptococcus_pyogenes_phage	1.9e-32	41.0
224197:224256	attL	NA	NA	NA	NA
AVH74700.1\|224621_225278_-	hypothetical protein	NA	NA	NA	NA
AVH74701.1\|225369_225675_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
AVH74702.1\|225661_227371_-	ATP-dependent exonuclease	NA	NA	NA	NA
AVH74703.1\|227536_228103_-	hypothetical protein	NA	NA	NA	NA
AVH74704.1\|228282_229305_-	endolysin	Q8LTJ6	Lactococcus_phage	1.1e-55	51.5
AVH74705.1\|229308_229719_-	hypothetical protein	NA	NA	NA	NA
AVH74706.1\|229733_229991_-	hypothetical protein	Q9AZX0	Lactococcus_phage	2.8e-05	52.7
AVH74707.1\|229992_230427_-	hypothetical protein	A0A1I9KKA6	Lactobacillus_phage	1.6e-05	29.3
AVH75817.1\|230423_233711_-	hypothetical protein	A0A1B0Y2S0	Lactobacillus_phage	2.3e-99	37.6
AVH74708.1\|235642_236002_-	hypothetical protein	A0A1S5SBJ8	Streptococcus_phage	2.0e-30	56.3
AVH74709.1\|236017_240871_-\|tail	phage tail protein	A0A059NT57	Lactococcus_phage	8.3e-191	48.8
AVH74710.1\|240882_241191_-	hypothetical protein	D7RWJ9	Brochothrix_phage	5.1e-14	45.0
AVH74711.1\|241283_241688_-	hypothetical protein	A0A182BQ86	Lactococcus_phage	7.7e-34	58.5
AVH74712.1\|241710_241977_-	hypothetical protein	A0A1D6Z291	Staphylococcus_phage	4.9e-13	54.7
AVH74713.1\|241958_242435_-\|tail	phage tail protein	V9QKJ6	Oenococcus_phage	6.9e-42	58.9
AVH74714.1\|242446_242812_-	hypothetical protein	Q6SE74	Lactobacillus_prophage	1.1e-23	45.5
AVH74715.1\|242813_243359_-	hypothetical protein	V5USK0	Oenococcus_phage	2.9e-52	59.9
AVH74716.1\|243351_243696_-	hypothetical protein	D7RWJ2	Brochothrix_phage	1.8e-23	53.2
AVH74717.1\|243692_244013_-	hypothetical protein	A0A059NT99	Lactococcus_phage	1.8e-17	45.7
AVH74718.1\|244027_245089_-\|capsid	major capsid protein E	V9QKJ3	Oenococcus_phage	8.3e-120	62.4
AVH74719.1\|245111_245474_-	hypothetical protein	V5UTH9	Oenococcus_phage	7.1e-31	58.9
AVH75818.1\|245486_246092_-\|capsid	phage capsid protein	Q6SE80	Lactobacillus_prophage	5.4e-15	34.3
AVH74720.1\|246206_247397_-	hypothetical protein	V5UTD3	Oenococcus_phage	1.3e-89	47.4
AVH74721.1\|247400_247715_-\|protease	ribosomal-processing cysteine protease Prp	D2J003	Enterococcus_phage	1.3e-09	44.2
AVH74722.1\|247662_249105_-\|portal	phage portal protein	V9QKI8	Oenococcus_phage	3.6e-150	55.3
AVH74723.1\|249115_250411_-\|terminase	PBSX family phage terminase large subunit	V5UQR5	Oenococcus_phage	1.4e-169	66.0
AVH74724.1\|250388_251192_-\|terminase	terminase	V9QKX0	Oenococcus_phage	5.8e-49	42.6
AVH74725.1\|251503_251758_-	hypothetical protein	NA	NA	NA	NA
AVH74726.1\|252188_252578_-	transcriptional regulator	E3W8E2	Leuconostoc_phage	4.7e-12	31.2
AVH74727.1\|252593_252872_-	hypothetical protein	NA	NA	NA	NA
AVH74728.1\|252872_253148_-	hypothetical protein	A0A2H4J550	uncultured_Caudovirales_phage	8.9e-10	39.1
AVH74729.1\|253150_253342_-	hypothetical protein	NA	NA	NA	NA
AVH74730.1\|253344_253785_-	hypothetical protein	NA	NA	NA	NA
AVH74731.1\|253777_254065_-	DUF2829 domain-containing protein	A0MZD8	Enterobacteria_phage	2.5e-10	45.5
AVH74732.1\|254453_254642_-	hypothetical protein	NA	NA	NA	NA
AVH74733.1\|254765_255026_-	hypothetical protein	NA	NA	NA	NA
AVH74734.1\|255015_255468_-	hypothetical protein	NA	NA	NA	NA
AVH74735.1\|255436_255748_-	hypothetical protein	D7RWH1	Brochothrix_phage	6.3e-12	44.9
AVH74736.1\|255900_256107_-	hypothetical protein	NA	NA	NA	NA
AVH74737.1\|256093_257002_-	hypothetical protein	A0A0S2MYA8	Enterococcus_phage	7.8e-18	34.2
AVH74738.1\|257015_257477_-	single-stranded DNA-binding protein	A0A2D1GPB7	Lactobacillus_phage	2.6e-38	57.5
AVH74739.1\|257469_258165_-	hypothetical protein	NA	NA	NA	NA
AVH74740.1\|258178_258997_-	recombinase RecT	E3W8C7	Leuconostoc_phage	2.9e-80	63.6
AVH74741.1\|259034_259280_-	hypothetical protein	NA	NA	NA	NA
AVH74742.1\|259285_259507_-	hypothetical protein	NA	NA	NA	NA
AVH74743.1\|259633_260368_-	hypothetical protein	B8R674	Lactobacillus_phage	2.3e-36	39.3
AVH74744.1\|260380_260608_-	transcriptional regulator	NA	NA	NA	NA
AVH74745.1\|260863_261217_+	transcriptional regulator	Q9T1J3	Lactobacillus_phage	3.8e-13	39.6
AVH74746.1\|261220_261634_+	hypothetical protein	NA	NA	NA	NA
AVH74747.1\|261681_262308_+	hypothetical protein	NA	NA	NA	NA
AVH75819.1\|262854_263313_+	hypothetical protein	A0A0A1ERB0	Lactobacillus_phage	7.2e-12	66.0
AVH74748.1\|264365_264686_+	hypothetical protein	A0A222YZD3	Escherichia_phage	2.2e-12	42.9
AVH74749.1\|264765_265104_+	hypothetical protein	NA	NA	NA	NA
AVH74750.1\|265369_265876_+	DUF4231 domain-containing protein	NA	NA	NA	NA
AVH74751.1\|265878_266493_+	molecular chaperone Tir	A0A0S2MYG4	Enterococcus_phage	3.0e-53	58.3
AVH74752.1\|266501_266705_-	hypothetical protein	Q4ZA73	Staphylococcus_virus	1.2e-16	66.1
AVH75820.1\|267816_268545_+\|integrase	site-specific integrase	A0A172LN96	Lactococcus_phage	1.4e-33	40.4
AVH74753.1\|268880_269879_-	catabolite control protein A	C6ZCU4	Enterobacteria_phage	5.5e-25	28.2
268618:268692	attR	NA	NA	NA	NA
AVH74754.1\|270093_271194_+	aminopeptidase P family protein	NA	NA	NA	NA
AVH74755.1\|271327_272290_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A096XT60	Enterococcus_phage	2.3e-121	65.8
AVH74756.1\|272316_274488_-	ribonucleotide-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.6e-247	58.9

DBSCAN-SWA_2

540940 : 547934

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH74988.1\|540940_542542_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	8.3e-140	47.6
AVH74989.1\|542727_543321_-	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA
AVH74990.1\|543436_544273_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.3e-32	36.6
AVH74991.1\|544315_545353_-	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.1e-73	46.0
AVH74992.1\|545366_545960_-	dTDP-4-keto-6-deoxy-D-glucose epimerase	A0A218MN57	uncultured_virus	2.5e-09	32.9
AVH74993.1\|545966_546839_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.1e-98	61.5
AVH74994.1\|546947_547934_-	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	1.1e-06	33.3

DBSCAN-SWA_3

1277391 : 1286665

Catovirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH75624.1\|1277391_1279788_+	endonuclease MutS2	A0A1V0SC35	Catovirus	1.7e-16	24.8
AVH75625.1\|1279924_1280764_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.6e-65	46.1
AVH75626.1\|1281205_1282414_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.2e-42	34.6
AVH75627.1\|1282414_1283578_+	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
AVH75628.1\|1283688_1284129_+	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	5.3e-20	35.6
AVH75629.1\|1284157_1285057_+	N-acetylmuramoyl-L-alanine amidase	Q9FZW0	Bacillus_phage	2.1e-15	31.9
AVH75630.1\|1285336_1286665_+\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	3.1e-23	26.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage