CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014019	Acinetobacter nosocomialis strain FDAARGOS_129 chromosome, complete genome	0 crisprs	DEDDh,WYL,PD-DExK,cas3,csa3	0	0	5	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

744435 : 809082

Acinetobacter_phage(73.47%)

integrase,portal,holin,terminase,protease

attL 759224:759240|attR 795927:795943

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF43533.1\|744435_744990_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	2.7e-98	100.0
AVF43534.1\|745245_746745_+	xanthine dehydrogenase small subunit	A0A0P0IVM8	Acinetobacter_phage	3.3e-271	93.2
AVF43535.1\|746746_749122_+	xanthine dehydrogenase molybdopterin binding subunit	A0A0P0I429	Acinetobacter_phage	0.0e+00	98.2
AVF43536.1\|749128_750112_+	xanthine dehydrogenase accessory protein XdhC	A0A0P0IKN7	Acinetobacter_phage	2.1e-178	93.9
AVF43537.1\|750122_750818_-	DNA mismatch repair protein MutS	A0A0P0IDT4	Acinetobacter_phage	1.6e-119	98.3
AVF43538.1\|750827_751634_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.6e-144	98.5
AVF46367.1\|751643_752693_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	9.8e-190	100.0
AVF43539.1\|753048_755781_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	0.0e+00	98.5
AVF43540.1\|755794_758560_+	aminopeptidase	A0A0P0IY26	Acinetobacter_phage	0.0e+00	99.2
AVF43541.1\|758655_759240_-	type 1 glutamine amidotransferase	A0A0P0IKJ1	Acinetobacter_phage	1.7e-111	100.0
759224:759240	attL	NA	NA	NA	NA
AVF43542.1\|759354_759624_-	hypothetical protein	A0A0P0J067	Acinetobacter_phage	5.6e-41	97.8
AVF43543.1\|759623_759977_-	hypothetical protein	J7I0Y4	Acinetobacter_phage	2.1e-59	95.7
AVF43544.1\|759973_760198_-	hypothetical protein	A0A0D4DCJ9	Acinetobacter_phage	3.7e-30	95.7
AVF43545.1\|760194_760404_-	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	3.7e-32	94.2
AVF43546.1\|760400_760610_-	hypothetical protein	NA	NA	NA	NA
AVF43547.1\|760612_761047_-	hypothetical protein	A0A1V0DXB0	Yersinia_phage	2.9e-10	41.5
AVF43548.1\|761058_761322_-	hypothetical protein	NA	NA	NA	NA
AVF43549.1\|761331_762231_-	hypothetical protein	NA	NA	NA	NA
AVF43550.1\|762233_763085_-	nuclease	G8CLD3	Synechococcus_phage	4.3e-34	31.6
AVF43551.1\|763094_763577_-	hypothetical protein	NA	NA	NA	NA
AVF43552.1\|763576_763963_-	hypothetical protein	NA	NA	NA	NA
AVF43553.1\|764051_764366_-	hypothetical protein	A0A1B1P9H2	Acinetobacter_phage	9.8e-45	95.2
AVF43554.1\|764365_764557_-	hypothetical protein	A0A1B1P9G9	Acinetobacter_phage	3.7e-15	66.2
AVF43555.1\|765160_765922_-	phage repressor protein	J7I4M9	Acinetobacter_phage	5.5e-134	93.5
AVF43556.1\|765999_766185_+	hypothetical protein	J7HXD2	Acinetobacter_phage	3.0e-25	91.8
AVF43557.1\|766195_766570_+	XRE family transcriptional regulator	A0A0N7IRF8	Acinetobacter_phage	2.3e-32	60.8
AVF43558.1\|766819_767713_+	DNA replication protein DnaD	A0A068C8G6	Acinetobacter_phage	3.5e-47	46.8
AVF43559.1\|767712_769038_+	DNA helicase	A0A0P0IVX0	Acinetobacter_phage	3.4e-232	91.8
AVF43560.1\|769034_769331_+	winged helix-turn-helix domain-containing protein	A0A1B1P9H6	Acinetobacter_phage	1.1e-45	92.9
AVF43561.1\|769500_769809_+	hypothetical protein	A0A068CDI0	Acinetobacter_phage	6.3e-12	40.9
AVF43562.1\|769805_770012_+	hypothetical protein	A0A0A0RML7	Acinetobacter_phage	2.7e-27	85.3
AVF43563.1\|770022_770274_+	hypothetical protein	NA	NA	NA	NA
AVF43564.1\|770275_770605_+	hypothetical protein	A0A0P0J0G5	Acinetobacter_phage	3.7e-10	58.0
AVF43565.1\|770601_770964_+	hypothetical protein	A0A220NQK3	Acinetobacter_phage	4.1e-47	93.3
AVF43566.1\|770967_771219_+	hypothetical protein	NA	NA	NA	NA
AVF43567.1\|771218_771503_+	hypothetical protein	K4I378	Acinetobacter_phage	1.5e-28	61.1
AVF43568.1\|771512_772064_+	hypothetical protein	A0A1B1P9I8	Acinetobacter_phage	1.3e-60	63.9
AVF43569.1\|772201_772522_+	hypothetical protein	W8VYP4	Pseudomonas_phage	2.1e-26	58.8
AVF43570.1\|772707_773034_+	hypothetical protein	NA	NA	NA	NA
AVF43571.1\|773488_773692_+	hypothetical protein	A0A1B1P9J1	Acinetobacter_phage	1.3e-18	71.6
AVF43572.1\|773642_773918_+	hypothetical protein	A0A1B1P9J2	Acinetobacter_phage	2.7e-38	85.7
AVF43573.1\|774099_774549_+	hypothetical protein	I6R0L8	Salmonella_phage	3.1e-36	48.6
AVF43574.1\|774556_774958_+	hypothetical protein	NA	NA	NA	NA
AVF43575.1\|774994_775477_+	hypothetical protein	A0A0D4DC11	Acinetobacter_phage	5.3e-58	67.5
AVF43576.1\|775637_776195_+\|terminase	terminase small subunit	A0A1W6JNT5	Morganella_phage	1.1e-38	48.8
AVF43577.1\|776199_777744_+\|terminase	terminase	A0A1Y0SUC5	Pseudomonas_phage	1.8e-171	59.9
AVF46368.1\|777746_780011_+\|portal	portal protein p19	A0A0E3GMB1	Rhodoferax_phage	2.2e-69	29.1
AVF43578.1\|779994_780804_+	hypothetical protein	NA	NA	NA	NA
AVF43579.1\|780808_782026_+	hypothetical protein	A0A1B1IR95	uncultured_Mediterranean_phage	4.6e-58	36.2
AVF43580.1\|782087_782546_+	hypothetical protein	NA	NA	NA	NA
AVF43581.1\|782600_783221_+	hypothetical protein	NA	NA	NA	NA
AVF43582.1\|783204_784599_+	hypothetical protein	A0A0E3JSB2	Rhodoferax_phage	1.4e-74	34.9
AVF43583.1\|784601_785000_+	hypothetical protein	NA	NA	NA	NA
AVF43584.1\|784986_785319_+	hypothetical protein	NA	NA	NA	NA
AVF43585.1\|785315_785762_+	N-acetyltransferase	NA	NA	NA	NA
AVF43586.1\|785758_786397_+	DNA transfer protein p32	A0A2I7RHI8	Vibrio_phage	5.9e-12	40.4
AVF43587.1\|786406_787771_+	hypothetical protein	NA	NA	NA	NA
AVF43588.1\|787806_788172_+	hypothetical protein	NA	NA	NA	NA
AVF43589.1\|789122_791372_+	hypothetical protein	NA	NA	NA	NA
AVF43590.1\|791430_793440_+	hypothetical protein	A0A2I7S0A8	Vibrio_phage	2.0e-13	32.1
AVF43591.1\|793515_793794_+\|holin	holin	C7BGD7	Burkholderia_phage	1.8e-21	53.9
AVF43592.1\|793793_794237_+	muraminidase	A0A1B1P9G1	Acinetobacter_phage	5.1e-63	82.6
AVF43593.1\|794361_794559_+	hypothetical protein	A0A0D4DBH0	Acinetobacter_phage	3.4e-11	71.1
AVF43594.1\|794555_795752_-\|integrase	integrase	A0A0D4DBR3	Acinetobacter_phage	1.3e-217	95.2
AVF43595.1\|796237_798040_-	Xaa-Pro aminopeptidase	A0A0P0I8D7	Acinetobacter_phage	0.0e+00	95.8
795927:795943	attR	NA	NA	NA	NA
AVF43596.1\|798036_799578_-	MFS transporter	A0A0P0IY73	Acinetobacter_phage	3.2e-274	94.0
AVF43597.1\|800306_801716_+	type I glutamate--ammonia ligase	NA	NA	NA	NA
AVF43598.1\|801841_802351_+	chorismate--pyruvate lyase	NA	NA	NA	NA
AVF43599.1\|802347_803226_+	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
AVF43600.1\|803341_804799_+	alpha/beta hydrolase	NA	NA	NA	NA
AVF46369.1\|804906_805107_+	hypothetical protein	NA	NA	NA	NA
AVF43601.1\|805117_805561_-	DUF2726 domain-containing protein	NA	NA	NA	NA
AVF43602.1\|806179_806806_-	superoxide dismutase [Fe]	NA	NA	NA	NA
AVF43603.1\|806953_807712_-	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
AVF43604.1\|807906_809082_+\|protease	serine protease	W5SAB9	Pithovirus	1.0e-06	29.1

DBSCAN-SWA_2

1210252 : 1254890

Acinetobacter_phage(59.52%)

integrase,head,tail,protease,transposase,coat

attL 1210075:1210091|attR 1256177:1256193

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1210075:1210091	attL	NA	NA	NA	NA
AVF43935.1\|1210252_1211488_+\|integrase	integrase	A0A0P0IKP2	Acinetobacter_phage	2.9e-233	98.0
AVF43936.1\|1211478_1212687_-\|transposase	IS256-like element ISAba26 family transposase	A0A218MNI5	uncultured_virus	4.0e-46	46.0
AVF43937.1\|1212846_1213116_-	DNA-binding protein	A0A0N7IRE8	Acinetobacter_phage	3.5e-43	100.0
AVF43938.1\|1213116_1213374_-	hypothetical protein	A0A0P0J0B1	Acinetobacter_phage	1.3e-42	90.6
AVF43939.1\|1213377_1213662_-	hypothetical protein	A0A0P0HSI5	Acinetobacter_phage	1.7e-43	94.7
AVF43940.1\|1213658_1213868_-	hypothetical protein	A0A0P0IVS1	Acinetobacter_phage	6.3e-32	98.6
AVF43941.1\|1213870_1214116_-	hypothetical protein	A0A0P0IVN4	Acinetobacter_phage	3.3e-40	98.8
AVF43942.1\|1214117_1215077_-	hypothetical protein	A0A0D4DBR8	Acinetobacter_phage	1.2e-162	91.2
AVF43943.1\|1215073_1216195_-	AAA family ATPase	A0A0N7IRE0	Acinetobacter_phage	4.4e-212	99.5
AVF43944.1\|1216205_1216529_-	hypothetical protein	A0A0P0IVW1	Acinetobacter_phage	1.5e-51	92.5
AVF43945.1\|1216531_1216972_-	hypothetical protein	A0A0N7IRF7	Acinetobacter_phage	1.3e-74	96.6
AVF43946.1\|1217192_1217474_-	hypothetical protein	NA	NA	NA	NA
AVF43947.1\|1217475_1218132_-	helix-turn-helix domain-containing protein	A0A0P0IYD9	Acinetobacter_phage	3.1e-69	63.8
AVF43948.1\|1218244_1218445_+	XRE family transcriptional regulator	A0A0P0IKT3	Acinetobacter_phage	3.1e-20	68.2
AVF43949.1\|1218453_1218810_+	transcriptional regulator	J7I452	Acinetobacter_phage	2.5e-57	97.5
AVF46394.1\|1218859_1219144_+	hypothetical protein	A0A0P0IVP2	Acinetobacter_phage	5.4e-34	85.7
AVF46395.1\|1219215_1219440_+	hypothetical protein	A0A0P0I444	Acinetobacter_phage	6.5e-35	98.6
AVF43950.1\|1219432_1220314_+	replication protein	A0A0P0IKQ2	Acinetobacter_phage	6.2e-137	94.5
AVF43951.1\|1220316_1221117_+	hypothetical protein	A0A0P0IDV1	Acinetobacter_phage	3.3e-145	96.6
AVF43952.1\|1221113_1221446_+	hypothetical protein	A0A0P0IKW4	Acinetobacter_phage	7.0e-33	59.4
AVF43953.1\|1221644_1222121_+	hypothetical protein	A0A2H4J548	uncultured_Caudovirales_phage	1.2e-25	40.3
AVF43954.1\|1222092_1222347_+	hypothetical protein	NA	NA	NA	NA
AVF43955.1\|1222663_1222984_+	hypothetical protein	NA	NA	NA	NA
AVF43956.1\|1223055_1223274_+	hypothetical protein	NA	NA	NA	NA
AVF43957.1\|1223483_1223744_+	hypothetical protein	NA	NA	NA	NA
AVF43958.1\|1224057_1224423_+	hypothetical protein	NA	NA	NA	NA
AVF43959.1\|1224610_1224847_+	hypothetical protein	NA	NA	NA	NA
AVF43960.1\|1225491_1225947_+	hypothetical protein	A0A0P0HSF5	Acinetobacter_phage	2.2e-77	93.4
AVF43961.1\|1226007_1226475_+	hypothetical protein	A0A0P0IRI6	Acinetobacter_phage	4.7e-59	73.5
AVF43962.1\|1226443_1227085_+	hypothetical protein	A0A0P0I8J9	Acinetobacter_phage	4.5e-113	87.8
AVF43963.1\|1227143_1227620_+	DUF2280 domain-containing protein	A0A0P0HSK4	Acinetobacter_phage	4.5e-33	53.6
AVF43964.1\|1227597_1229124_+	helicase	E5AGA3	Erwinia_phage	3.6e-92	40.3
AVF43965.1\|1229132_1230467_+	hypothetical protein	M4SN90	Psychrobacter_phage	4.4e-86	39.0
AVF43966.1\|1230411_1231224_+\|head	phage head morphogenesis protein	M4T3R2	Psychrobacter_phage	4.8e-51	41.0
AVF43967.1\|1231295_1232147_+	hypothetical protein	NA	NA	NA	NA
AVF43968.1\|1232224_1233424_+	hypothetical protein	H9C194	Pectobacterium_phage	1.5e-24	34.3
AVF43969.1\|1233442_1233913_+	hypothetical protein	M4T3R5	Psychrobacter_phage	4.8e-19	43.8
AVF43970.1\|1233916_1234897_+	DUF2184 domain-containing protein	H9C0E5	Vibrio_phage	1.1e-06	22.2
AVF43971.1\|1234909_1235287_+	hypothetical protein	NA	NA	NA	NA
AVF43972.1\|1235296_1235680_+	DUF4054 domain-containing protein	NA	NA	NA	NA
AVF43973.1\|1235689_1235881_+	hypothetical protein	NA	NA	NA	NA
AVF43974.1\|1235888_1236371_+	hypothetical protein	NA	NA	NA	NA
AVF43975.1\|1236363_1236807_+	hypothetical protein	NA	NA	NA	NA
AVF43976.1\|1236869_1237637_+	hypothetical protein	NA	NA	NA	NA
AVF43977.1\|1237643_1237958_+	hypothetical protein	NA	NA	NA	NA
AVF43978.1\|1237993_1238221_+	hypothetical protein	NA	NA	NA	NA
AVF43979.1\|1238294_1239071_+	hypothetical protein	NA	NA	NA	NA
AVF43980.1\|1239140_1241918_+\|tail	phage tail protein	A0A1B1P9E6	Acinetobacter_phage	5.4e-54	30.3
AVF43981.1\|1241928_1242714_+	hypothetical protein	NA	NA	NA	NA
AVF43982.1\|1242710_1243568_+	hypothetical protein	A0A2D1GNT2	Pseudomonas_phage	2.7e-12	25.1
AVF43983.1\|1243630_1246693_+\|coat	spore coat protein CotH	H7BUR7	unidentified_phage	4.7e-06	33.8
AVF43984.1\|1246689_1247343_+	serine/threonine-protein phosphatase 2	K7PJZ5	Enterobacterial_phage	2.1e-41	43.8
AVF43985.1\|1247397_1247832_+	hypothetical protein	A0A0B5A615	Paracoccus_phage	5.9e-08	33.3
AVF43986.1\|1247832_1250322_+	hypothetical protein	A0A1I9L2F3	Xanthomonas_phage	3.4e-07	23.1
AVF43987.1\|1250386_1250776_+	hypothetical protein	J7I481	Acinetobacter_phage	2.8e-65	98.4
AVF43988.1\|1250818_1251364_+	hypothetical protein	A0A0B5KTG2	Acinetobacter_phage	6.2e-95	94.4
AVF43989.1\|1251423_1252248_-\|protease	serine protease	A0A2H4JE36	uncultured_Caudovirales_phage	1.3e-35	37.8
AVF43990.1\|1252315_1253611_-	DNA polymerase V subunit UmuC	A0A2H4JBL5	uncultured_Caudovirales_phage	4.8e-162	62.3
AVF43991.1\|1253607_1254108_-	DNA polymerase V	A0A2H4J538	uncultured_Caudovirales_phage	9.2e-45	59.0
AVF46396.1\|1254254_1254890_-	DUF159 family protein	A0A218MNF5	uncultured_virus	2.3e-69	57.4
1256177:1256193	attR	NA	NA	NA	NA

DBSCAN-SWA_3

2722567 : 2733192

Acinetobacter_phage(33.33%)

integrase

attL 2720657:2720672|attR 2726118:2726133

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2720657:2720672	attL	NA	NA	NA	NA
AVF45241.1\|2722567_2722831_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	2.4e-20	58.0
AVF45242.1\|2722832_2723324_-	phosphopantetheine adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	3.7e-30	44.3
AVF45243.1\|2723645_2724860_+\|integrase	integrase	A0A0P0IRB7	Acinetobacter_phage	1.3e-121	55.6
AVF45244.1\|2724856_2725051_-	hypothetical protein	A0A1B1P9F8	Acinetobacter_phage	4.6e-29	95.3
AVF45245.1\|2725177_2725720_-	hypothetical protein	J7I0Y1	Acinetobacter_phage	2.6e-93	89.4
AVF45246.1\|2725716_2726094_-	hypothetical protein	A0A2H4JFC0	uncultured_Caudovirales_phage	3.3e-31	58.9
AVF45247.1\|2726172_2728344_-	hypothetical protein	A0A2H4PIX9	Corynebacterium_phage	1.5e-11	34.3
2726118:2726133	attR	NA	NA	NA	NA
AVF45248.1\|2728353_2730030_-	transcriptional regulator	A0A2H4JCA3	uncultured_Caudovirales_phage	1.0e-135	45.3
AVF45249.1\|2730029_2730338_-	hypothetical protein	NA	NA	NA	NA
AVF45250.1\|2730663_2733192_-	hypothetical protein	A0A193GZ61	Enterobacter_phage	1.5e-106	32.2

DBSCAN-SWA_4

2746279 : 2749411

Acinetobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF45262.1\|2746279_2746888_+	exonuclease	A0A2H4J882	uncultured_Caudovirales_phage	1.1e-84	75.8
AVF45263.1\|2746884_2747142_+	hypothetical protein	K4HYN5	Acinetobacter_phage	1.0e-28	77.5
AVF45264.1\|2747138_2747402_+	hypothetical protein	NA	NA	NA	NA
AVF45265.1\|2747413_2747950_+	hypothetical protein	A0A1B1P9F6	Acinetobacter_phage	2.1e-34	93.4
AVF45266.1\|2747946_2748156_+	hypothetical protein	A0A0P0IRG7	Acinetobacter_phage	3.7e-32	94.2
AVF45267.1\|2748152_2748635_+	SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	1.1e-68	73.0
AVF45268.1\|2748635_2748836_+	AlpA family phage regulatory protein	NA	NA	NA	NA
AVF45269.1\|2748937_2749411_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.2e-23	42.3

DBSCAN-SWA_5

2986682 : 2994885

uncultured_Caudovirales_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF45469.1\|2986682_2987906_-	ImmA/IrrE family metallo-endopeptidase	A0A222YXG1	Escherichia_phage	4.1e-22	47.1
AVF45470.1\|2987895_2988168_-	hypothetical protein	NA	NA	NA	NA
AVF45471.1\|2988575_2989394_-	hypothetical protein	NA	NA	NA	NA
AVF45472.1\|2989690_2990758_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	4.6e-94	59.2
AVF45473.1\|2990862_2991816_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.2e-61	42.8
AVF45474.1\|2991834_2992539_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.3e-92	72.5
AVF45475.1\|2992543_2993584_-	arsenical-resistance protein	NA	NA	NA	NA
AVF45476.1\|2993591_2994065_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	5.6e-36	51.3
AVF45477.1\|2994071_2994395_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.2e-21	61.0
AVF45478.1\|2994450_2994885_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	5.3e-41	62.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage