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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP019653 Paenibacillus larvae subsp. larvae DSM 25430 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 1 0
CP019652 Paenibacillus larvae subsp. larvae DSM 25430 chromosome, complete genome 1 crisprs cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,cas14j,csa3,c2c10_CAS-V-U3,DinG,DEDDh,cas3 2 6 36 1
CP019654 Paenibacillus larvae subsp. larvae DSM 25430 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP019653
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 10304 : 19765 8 Paenibacillus_phage(66.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. CP019652
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP019652_1 1615730-1616296 Orphan I-C
8 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP019652_1 1.1|1615762|32|CP019652|PILER-CR,CRT 1615762-1615793 32 CP019652.1 2659342-2659373 1 0.969
CP019652_1 1.8|1615763|31|CP019652|CRISPRCasFinder 1615763-1615793 31 CP019652.1 2659343-2659373 1 0.968

1. spacer 1.1|1615762|32|CP019652|PILER-CR,CRT matches to position: 2659342-2659373, mismatch: 1, identity: 0.969

ttgtttcgatgctatatttatacgcatcaata	CRISPR spacer
ttgtttcgatgctatatttgtacgcatcaata	Protospacer
*******************.************

2. spacer 1.8|1615763|31|CP019652|CRISPRCasFinder matches to position: 2659343-2659373, mismatch: 1, identity: 0.968

tgtttcgatgctatatttatacgcatcaata	CRISPR spacer
tgtttcgatgctatatttgtacgcatcaata	Protospacer
******************.************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP019652_1 1.3|1615894|37|CP019652|PILER-CR,CRT 1615894-1615930 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
CP019652_1 1.3|1615894|37|CP019652|PILER-CR,CRT 1615894-1615930 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
CP019652_1 1.6|1616097|37|CP019652|PILER-CR,CRT 1616097-1616133 37 KT361653 Paenibacillus phage Paisley, complete genome 41256-41292 0 1.0
CP019652_1 1.6|1616097|37|CP019652|PILER-CR,CRT 1616097-1616133 37 NC_028746 Paenibacillus phage Harrison, complete genome 41333-41369 0 1.0
CP019652_1 1.10|1615895|36|CP019652|CRISPRCasFinder 1615895-1615930 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
CP019652_1 1.10|1615895|36|CP019652|CRISPRCasFinder 1615895-1615930 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
CP019652_1 1.13|1616098|36|CP019652|CRISPRCasFinder 1616098-1616133 36 KT361653 Paenibacillus phage Paisley, complete genome 41257-41292 0 1.0
CP019652_1 1.13|1616098|36|CP019652|CRISPRCasFinder 1616098-1616133 36 NC_028746 Paenibacillus phage Harrison, complete genome 41334-41369 0 1.0
CP019652_1 1.15|1616233|31|CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35867-35897 2 0.935
CP019652_1 1.15|1616233|31|CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29492-29522 2 0.935
CP019652_1 1.15|1616233|31|CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30453-30483 2 0.935
CP019652_1 1.15|1616233|31|CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30454-30484 2 0.935
CP019652_1 1.16|1616232|32|CP019652|CRT 1616232-1616263 32 NZ_CP020329 Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence 35866-35897 3 0.906
CP019652_1 1.16|1616232|32|CP019652|CRT 1616232-1616263 32 NZ_CP019796 Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence 29491-29522 3 0.906
CP019652_1 1.16|1616232|32|CP019652|CRT 1616232-1616263 32 NZ_CP019661 Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence 30452-30483 3 0.906
CP019652_1 1.16|1616232|32|CP019652|CRT 1616232-1616263 32 NZ_CP019658 Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence 30453-30484 3 0.906
CP019652_1 1.15|1616233|31|CP019652|CRISPRCasFinder 1616233-1616263 31 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18377-18407 4 0.871
CP019652_1 1.16|1616232|32|CP019652|CRT 1616232-1616263 32 NZ_CP019720 Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence 18376-18407 5 0.844

1. spacer 1.3|1615894|37|CP019652|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

2. spacer 1.3|1615894|37|CP019652|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

3. spacer 1.6|1616097|37|CP019652|PILER-CR,CRT matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

4. spacer 1.6|1616097|37|CP019652|PILER-CR,CRT matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

attacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
attacaggggcagggaggtacagaagataggaggtac	Protospacer
*************************************

5. spacer 1.10|1615895|36|CP019652|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

6. spacer 1.10|1615895|36|CP019652|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

7. spacer 1.13|1616098|36|CP019652|CRISPRCasFinder matches to KT361653 (Paenibacillus phage Paisley, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

8. spacer 1.13|1616098|36|CP019652|CRISPRCasFinder matches to NC_028746 (Paenibacillus phage Harrison, complete genome) position: , mismatch: 0, identity: 1.0

ttacaggggcagggaggtacagaagataggaggtac	CRISPR spacer
ttacaggggcagggaggtacagaagataggaggtac	Protospacer
************************************

9. spacer 1.15|1616233|31|CP019652|CRISPRCasFinder matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

10. spacer 1.15|1616233|31|CP019652|CRISPRCasFinder matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

11. spacer 1.15|1616233|31|CP019652|CRISPRCasFinder matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

12. spacer 1.15|1616233|31|CP019652|CRISPRCasFinder matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 2, identity: 0.935

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaagccgaccgccatatagcgcggctat	Protospacer
* **********************.******

13. spacer 1.16|1616232|32|CP019652|CRT matches to NZ_CP020329 (Paenibacillus larvae subsp. pulvifaciens strain CCM 38 plasmid pPLP2.1, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

14. spacer 1.16|1616232|32|CP019652|CRT matches to NZ_CP019796 (Paenibacillus larvae subsp. pulvifaciens strain ATCC 13537 plasmid pPLP2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

15. spacer 1.16|1616232|32|CP019652|CRT matches to NZ_CP019661 (Paenibacillus larvae subsp. larvae strain Eric_IV plasmid unnamed2, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

16. spacer 1.16|1616232|32|CP019652|CRT matches to NZ_CP019658 (Paenibacillus larvae subsp. larvae strain Eric_III plasmid unnamed3, complete sequence) position: , mismatch: 3, identity: 0.906

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
tacttaagccgaccgccatatagcgcggctat	Protospacer
.* **********************.******

17. spacer 1.15|1616233|31|CP019652|CRISPRCasFinder matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

aattaagccgaccgccatatagcgtggctat	CRISPR spacer
cttaaagccgaccgccatatagcgcggctat	Protospacer
  * ********************.******

18. spacer 1.16|1616232|32|CP019652|CRT matches to NZ_CP019720 (Paenibacillus larvae subsp. larvae strain Eric_V plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

caattaagccgaccgccatatagcgtggctat	CRISPR spacer
acttaaagccgaccgccatatagcgcggctat	Protospacer
   * ********************.******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 115570 : 175933 46 Paenibacillus_phage(25.0%) transposase,protease NA
DBSCAN-SWA_2 181569 : 240649 51 Paenibacillus_phage(21.43%) holin,transposase,integrase attL 179706:179722|attR 190597:190613
DBSCAN-SWA_3 264761 : 311221 36 Paenibacillus_phage(36.36%) transposase,protease NA
DBSCAN-SWA_4 365885 : 593163 228 Paenibacillus_phage(44.44%) protease,tRNA,coat,bacteriocin,integrase,transposase attL 353644:353658|attR 469035:470424
DBSCAN-SWA_5 596280 : 637430 48 Paenibacillus_phage(46.15%) holin,transposase,lysis NA
DBSCAN-SWA_6 646413 : 706018 58 Paenibacillus_phage(72.0%) holin,transposase,coat,lysis NA
DBSCAN-SWA_7 717998 : 773367 48 Paenibacillus_phage(33.33%) holin,transposase NA
DBSCAN-SWA_8 780289 : 846397 54 Paenibacillus_phage(26.09%) transposase,protease,integrase attL 834175:834234|attR 845053:846441
DBSCAN-SWA_9 853371 : 902650 46 Paenibacillus_phage(54.55%) transposase NA
DBSCAN-SWA_10 969818 : 1055777 111 Paenibacillus_phage(62.5%) terminase,tRNA,coat,integrase,transposase attL 963365:963379|attR 1044323:1045711
DBSCAN-SWA_11 1062848 : 1113724 54 Paenibacillus_phage(40.0%) transposase,protease,coat NA
DBSCAN-SWA_12 1151058 : 1194569 52 Paenibacillus_phage(23.08%) transposase NA
DBSCAN-SWA_13 1206022 : 1214111 8 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_14 1230139 : 1280721 59 Paenibacillus_phage(40.0%) transposase,protease NA
DBSCAN-SWA_15 1304092 : 1426642 113 Paenibacillus_phage(40.0%) tRNA,transposase,protease NA
DBSCAN-SWA_16 1543073 : 1649462 113 Paenibacillus_phage(56.0%) protease,tRNA,coat,integrase,transposase attL 1586387:1586446|attR 1594149:1595536
DBSCAN-SWA_17 1652610 : 1695666 35 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_18 1770599 : 1865034 55 Paenibacillus_phage(57.14%) transposase,coat NA
DBSCAN-SWA_19 1868440 : 1920097 47 Paenibacillus_phage(68.75%) transposase NA
DBSCAN-SWA_20 1951612 : 1988348 25 Paenibacillus_phage(71.43%) tRNA,transposase NA
DBSCAN-SWA_21 2019050 : 2072761 47 Paenibacillus_phage(56.25%) tRNA,transposase NA
DBSCAN-SWA_22 2164924 : 2219461 62 Paenibacillus_phage(36.36%) tRNA,transposase,protease,integrase attL 2203846:2203860|attR 2219475:2219489
DBSCAN-SWA_23 2297906 : 2416900 140 Paenibacillus_phage(40.91%) tail,tRNA,integrase,capsid,transposase attL 2377105:2377147|attR 2390875:2390917
DBSCAN-SWA_24 2468126 : 2713146 266 Paenibacillus_phage(68.61%) holin,protease,portal,tail,tRNA,coat,integrase,lysis,capsid,transposase attL 2566595:2566654|attR 2699739:2701127
DBSCAN-SWA_25 2803332 : 2855124 48 Paenibacillus_phage(23.53%) tRNA,transposase,protease NA
DBSCAN-SWA_26 2861083 : 2901776 35 Paenibacillus_phage(36.36%) transposase,coat NA
DBSCAN-SWA_27 2962380 : 2979814 19 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_28 2984400 : 3028389 43 Paenibacillus_phage(41.67%) transposase,tRNA,coat NA
DBSCAN-SWA_29 3047434 : 3171165 115 Paenibacillus_phage(40.0%) tRNA,transposase,integrase attL 3106211:3106270|attR 3171138:3172576
DBSCAN-SWA_30 3189417 : 3211652 25 Paenibacillus_phage(50.0%) transposase NA
DBSCAN-SWA_31 3251490 : 3294150 40 Paenibacillus_phage(36.36%) tRNA,transposase NA
DBSCAN-SWA_32 3337760 : 3449054 100 Paenibacillus_phage(32.26%) tRNA,transposase,protease,coat NA
DBSCAN-SWA_33 3477407 : 3524033 44 Paenibacillus_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_34 3532477 : 3585272 52 Paenibacillus_phage(35.71%) transposase,bacteriocin,integrase attL 3532434:3532493|attR 3549697:3551087
DBSCAN-SWA_35 3622988 : 3672107 54 Paenibacillus_phage(35.71%) transposase NA
DBSCAN-SWA_36 3866313 : 3926281 57 Paenibacillus_phage(28.57%) tRNA,transposase,protease,bacteriocin NA
Click the colored protein region to show detailed information
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
CP019652.1|AVG12935.1|2589913_2590324_+|hypothetical-protein 2589913_2590324_+ 136 aa aa NA NA NA 2468126-2713146 yes