CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP023567	Erwinia pyrifoliae strain EpK1/15 chromosome, complete genome	0 crisprs	DinG,cas3,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1,cas2,cas6e,cas5,cas7,cse2gr11,cas8e	0	0	10	0
CP023568	Erwinia pyrifoliae strain EpK1/15 plasmid pEP48, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

443945 : 510858

uncultured_virus(37.5%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX71407.1\|443945_445095_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-48	40.4
AUX71408.1\|445188_445653_+	DUF943 domain-containing protein	NA	NA	NA	NA
AUX71409.1\|445775_446684_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUX71410.1\|446780_447851_+	NAD-dependent dehydratase	NA	NA	NA	NA
AUX71411.1\|447984_448764_+	translation factor (SUA5)	NA	NA	NA	NA
AUX71412.1\|448841_449750_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUX71413.1\|450369_450996_-	amino acid transporter	NA	NA	NA	NA
AUX71414.1\|451658_453269_+	alpha,alpha-trehalase	NA	NA	NA	NA
AUX71415.1\|453802_455143_+	DUF1338 domain-containing protein	NA	NA	NA	NA
AUX71416.1\|455442_456291_+	protein deglycase HchA	NA	NA	NA	NA
AUX74431.1\|456352_457141_-	3-oxoacyl-ACP reductase	A0A0G2Y924	Acanthamoeba_polyphaga_mimivirus	1.8e-07	31.9
AUX71417.1\|457501_457882_-	DUF4354 domain-containing protein	NA	NA	NA	NA
AUX71418.1\|458253_460371_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
AUX71419.1\|460445_462800_-	transcriptional regulator	NA	NA	NA	NA
AUX74432.1\|462801_464094_-	alcaligin biosynthesis protein	NA	NA	NA	NA
AUX71420.1\|464104_465658_-	pyridoxal-dependent decarboxylase	NA	NA	NA	NA
AUX71421.1\|466608_468351_+	hypothetical protein	NA	NA	NA	NA
AUX71422.1\|468361_469642_+	botulinum toxin	NA	NA	NA	NA
AUX71423.1\|469605_470097_+	hypothetical protein	NA	NA	NA	NA
AUX71424.1\|470324_471425_+	hypothetical protein	B6SD26	Bacteriophage	3.8e-59	40.8
AUX71425.1\|471496_476461_+	type IV secretion protein Rhs	B6SD27	Bacteriophage	0.0e+00	51.0
AUX71426.1\|476691_476886_+	hypothetical protein	NA	NA	NA	NA
AUX71427.1\|476986_477220_+	hypothetical protein	NA	NA	NA	NA
AUX71428.1\|477558_477951_+	hypothetical protein	NA	NA	NA	NA
AUX71429.1\|477952_478381_+	hypothetical protein	NA	NA	NA	NA
AUX71430.1\|478387_480034_+	PilN family type IVB pilus formation outer membrane protein	NA	NA	NA	NA
AUX71431.1\|480038_481319_+	pilus assembly protein	NA	NA	NA	NA
AUX71432.1\|481308_481833_+	pilus assembly protein	NA	NA	NA	NA
AUX71433.1\|481848_483327_+	type II secretion protein E	NA	NA	NA	NA
AUX71434.1\|483323_484436_+	general secretion pathway protein GspF	NA	NA	NA	NA
AUX71435.1\|484460_485054_+	prepilin	NA	NA	NA	NA
AUX71436.1\|485060_485558_+	lytic transglycosylase	NA	NA	NA	NA
AUX71437.1\|485554_486217_+	peptidase	NA	NA	NA	NA
AUX74433.1\|486206_487619_+	shufflon system plasmid conjugative transfer pilus tip adhesin PilV	NA	NA	NA	NA
AUX71438.1\|487672_488851_-	cell wall anchor protein	NA	NA	NA	NA
AUX71439.1\|490239_491448_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	2.4e-51	50.3
AUX71440.1\|492762_493913_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-48	40.4
AUX71441.1\|494642_494867_+	hypothetical protein	NA	NA	NA	NA
AUX71442.1\|495373_495595_+	hypothetical protein	NA	NA	NA	NA
AUX71443.1\|495688_496897_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.9e-51	50.3
AUX71444.1\|496953_498117_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	4.2e-48	51.2
AUX71445.1\|498173_498704_-	hypothetical protein	NA	NA	NA	NA
AUX71446.1\|499173_499638_+	hypothetical protein	NA	NA	NA	NA
AUX71447.1\|499631_499937_+	DUF1493 domain-containing protein	NA	NA	NA	NA
AUX71448.1\|500078_500399_+	integrative conjugative element protein, RAQPRD family	NA	NA	NA	NA
AUX71449.1\|500389_500635_+	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
AUX71450.1\|500647_501007_+	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
AUX71451.1\|501016_501391_+	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
AUX71452.1\|501387_502047_+	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
AUX71453.1\|502043_502907_+	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
AUX71454.1\|502906_504424_+	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
AUX74434.1\|504459_504858_+	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
AUX71455.1\|504857_507659_+	conjugative transfer ATPase	NA	NA	NA	NA
AUX71456.1\|508340_509693_-	adenylate/guanylate cyclase domain-containing protein	NA	NA	NA	NA
AUX71457.1\|509817_510858_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

525431 : 537821

uncultured_Caudovirales_phage(44.44%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX71469.1\|525431_525716_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	69.1
AUX71470.1\|525705_525948_-	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	1.1e-14	47.5
AUX71471.1\|526208_527264_-	recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.7e-14	27.3
AUX71472.1\|527478_530172_-	DNA primase	A0A1S5RF71	Helicobacter_phage	7.7e-21	24.8
AUX71473.1\|530284_530686_+	transcriptional regulator	A0A0A7AQV8	Bacillus_phage	1.8e-06	33.7
AUX71474.1\|530764_531067_+	type I addiction module toxin, SymE family	NA	NA	NA	NA
AUX71475.1\|531126_531579_-	SMI1/KNR4 family protein	NA	NA	NA	NA
AUX71476.1\|532085_532268_-	hypothetical protein	NA	NA	NA	NA
AUX74440.1\|532270_532576_-	hypothetical protein	NA	NA	NA	NA
AUX71477.1\|533080_533365_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	69.1
AUX71478.1\|533354_533597_-	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	1.1e-14	47.5
AUX71479.1\|533857_534913_-	recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.7e-14	27.3
AUX71480.1\|535127_537821_-	DNA primase	A0A1S5RF71	Helicobacter_phage	7.7e-21	24.8

DBSCAN-SWA_3

1087785 : 1095043

Bacillus_virus(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX71945.1\|1087785_1088409_+	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	5.4e-63	61.5
AUX71946.1\|1088504_1089779_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	2.8e-130	55.4
AUX71947.1\|1089851_1090448_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A248SJ97	Salicola_phage	2.1e-27	36.8
AUX71948.1\|1090760_1092035_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.6e-130	55.6
AUX71949.1\|1092224_1094579_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.5e-226	53.3
AUX71950.1\|1094770_1095043_+	integration host factor subunit alpha	A3E2K9	Sodalis_phage	8.0e-19	51.1

DBSCAN-SWA_4

1156202 : 1164773

Moumouvirus(16.67%)

transposase,integrase,tRNA

attL 1147718:1147732|attR 1166866:1166880

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1147718:1147732	attL	NA	NA	NA	NA
AUX72010.1\|1156202_1157591_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.9e-45	35.2
AUX72011.1\|1157672_1158689_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	1.4e-23	26.4
AUX72012.1\|1158883_1159096_-	ribosome-associated protein	NA	NA	NA	NA
AUX72013.1\|1159095_1159962_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	7.7e-31	36.7
AUX72014.1\|1160234_1160864_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.6e-94	80.3
AUX72015.1\|1161432_1161750_-	DUF1493 domain-containing protein	NA	NA	NA	NA
AUX72016.1\|1161746_1162202_-	hypothetical protein	A0A218M4J4	Erwinia_phage	1.3e-18	38.7
AUX72017.1\|1162364_1162739_-	hypothetical protein	NA	NA	NA	NA
AUX72018.1\|1163122_1163395_+	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
AUX72019.1\|1163391_1163625_+	hypothetical protein	NA	NA	NA	NA
AUX72020.1\|1163605_1164773_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.9e-176	95.1
1166866:1166880	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1653119 : 1724767

Shigella_phage(22.64%)

tail,capsid,transposase,head,portal,holin,plate,tRNA,terminase,integrase

attL 1652236:1652250|attR 1662922:1662936

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1652236:1652250	attL	NA	NA	NA	NA
AUX72442.1\|1653119_1654229_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AUX72443.1\|1654338_1654815_-	NUDIX hydrolase	NA	NA	NA	NA
AUX72444.1\|1654862_1655519_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AUX72445.1\|1655622_1656873_+	isocitrate dehydrogenase (NADP(+))	Q77Z09	Phage_21	9.7e-19	88.9
AUX72446.1\|1656978_1658346_-	ATP-binding protein	NA	NA	NA	NA
AUX72447.1\|1658379_1659507_-\|integrase	integrase	O21925	Phage_21	2.7e-121	58.4
AUX72448.1\|1659487_1659733_-	excisionase	NA	NA	NA	NA
AUX72449.1\|1659775_1660345_-	ATPase	K7PLW7	Enterobacteria_phage	1.2e-85	77.8
AUX74482.1\|1660341_1660710_-	hypothetical protein	A5LH61	Enterobacteria_phage	2.2e-19	55.3
AUX72450.1\|1660776_1661478_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	5.3e-75	58.0
AUX72451.1\|1661452_1661896_-	hypothetical protein	Q7Y3W7	Yersinia_phage	1.8e-36	61.7
AUX72452.1\|1661888_1662419_-	hypothetical protein	K7PKJ9	Enterobacteria_phage	3.2e-56	62.6
AUX72453.1\|1662551_1663379_-	hypothetical protein	Q8HAA2	Salmonella_phage	7.1e-135	88.0
1662922:1662936	attR	NA	NA	NA	NA
AUX72454.1\|1663438_1663810_-	hypothetical protein	Q8HAA1	Salmonella_phage	1.5e-55	87.8
AUX72455.1\|1664114_1664348_+	hypothetical protein	NA	NA	NA	NA
AUX72456.1\|1664325_1664565_-	hypothetical protein	NA	NA	NA	NA
AUX72457.1\|1664651_1665820_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.9e-176	95.1
AUX72458.1\|1665800_1665989_-	hypothetical protein	NA	NA	NA	NA
AUX72459.1\|1666712_1667303_-	XRE family transcriptional regulator	NA	NA	NA	NA
AUX72460.1\|1667409_1667634_+	transcriptional regulator	A0A0N7C1T6	Escherichia_phage	6.2e-09	50.0
AUX72461.1\|1667653_1668118_+	hypothetical protein	K7PJS5	Enterobacterial_phage	3.3e-57	71.5
AUX72462.1\|1668182_1668374_+	hypothetical protein	NA	NA	NA	NA
AUX72463.1\|1668370_1669183_+	hypothetical protein	A0A248SL11	Klebsiella_phage	2.6e-41	46.2
AUX72464.1\|1669179_1669362_+	DUF4222 domain-containing protein	NA	NA	NA	NA
AUX72465.1\|1669358_1670411_+	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	9.0e-34	39.0
AUX72466.1\|1670407_1670860_+	PerC family transcriptional regulator	NA	NA	NA	NA
AUX72467.1\|1670853_1671735_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	9.9e-127	72.0
AUX72468.1\|1671731_1672808_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	7.1e-127	62.8
AUX72469.1\|1672800_1673172_+	antitermination protein Q	U5P0A5	Shigella_phage	8.6e-32	55.4
AUX72470.1\|1673207_1673501_-	hypothetical protein	NA	NA	NA	NA
AUX72471.1\|1673506_1674322_-	hypothetical protein	NA	NA	NA	NA
AUX72472.1\|1674558_1674759_+	hypothetical protein	A0A291AWX6	Escherichia_phage	3.7e-05	42.4
AUX72473.1\|1674907_1675966_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.5e-113	68.7
AUX72474.1\|1676020_1676434_-	type II toxin-antitoxin system HicB family antitoxin	A0A0D4DCG1	Acinetobacter_phage	1.9e-16	35.6
AUX72475.1\|1676489_1676672_-	type II toxin-antitoxin system HicA family toxin	A0A0D4DC32	Acinetobacter_phage	1.8e-11	54.2
AUX72476.1\|1676830_1677178_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.7e-35	66.4
AUX72477.1\|1677158_1677578_+	structural protein	X2KPC6	Enterobacteria_phage	1.2e-37	53.2
AUX74483.1\|1677830_1678031_+	hypothetical protein	H6WRZ6	Salmonella_phage	6.9e-12	59.7
AUX72478.1\|1678115_1678466_+	HNH endonuclease	F1C587	Cronobacter_phage	2.8e-40	67.3
AUX72479.1\|1678787_1679255_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	5.5e-44	58.4
AUX72480.1\|1679208_1680954_+\|terminase	terminase large subunit	M4QNU0	Tetraselmis_viridis_virus	1.1e-132	43.5
AUX72481.1\|1680953_1682258_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.1e-190	74.7
AUX72482.1\|1682269_1683118_+	peptidase S14	K7PH05	Enterobacteria_phage	5.3e-101	68.0
AUX72483.1\|1683127_1684345_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.7e-180	80.2
AUX72484.1\|1684344_1684803_+	hypothetical protein	K7PHI6	Enterobacteria_phage	4.5e-06	68.4
AUX72485.1\|1684812_1685142_+\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	5.0e-23	51.9
AUX72486.1\|1685143_1685533_+\|head,tail	head-tail adaptor protein	U5P0R0	Shigella_phage	1.8e-35	58.1
AUX72487.1\|1685525_1686032_+	hypothetical protein	Q8HAC8	Salmonella_phage	5.8e-71	77.7
AUX72488.1\|1686028_1686589_+	hypothetical protein	A0A192Y5U4	Salmonella_phage	2.1e-69	67.2
AUX72489.1\|1686592_1686772_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	4.0e-11	58.2
AUX72490.1\|1686771_1688268_+\|tail	phage tail protein	Q8HAC5	Salmonella_phage	4.6e-193	68.1
AUX72491.1\|1688267_1688624_+\|tail	phage tail protein	Q8W622	Enterobacteria_phage	1.8e-50	82.2
AUX72492.1\|1688620_1688944_+\|tail	phage tail protein	Q8HAC3	Salmonella_phage	2.3e-25	57.9
AUX72493.1\|1689028_1690936_+\|tail	phage tail tape measure protein	U5P420	Shigella_phage	4.0e-181	56.3
AUX72494.1\|1690971_1692273_+	DNA circularization protein	U5P4I0	Shigella_phage	2.7e-144	59.3
AUX72495.1\|1692269_1693346_+\|plate	baseplate protein	U5P0H6	Shigella_phage	3.1e-146	69.7
AUX72496.1\|1693345_1693882_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	3.2e-35	49.4
AUX72497.1\|1693881_1694295_+	hypothetical protein	A0A192Y6D0	Salmonella_phage	4.1e-51	69.3
AUX72498.1\|1694287_1695361_+\|plate	phage baseplate protein	A0A192Y6E4	Salmonella_phage	8.0e-147	71.0
AUX72499.1\|1695363_1695945_+	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	6.8e-92	78.8
AUX72500.1\|1696116_1697157_-\|transposase	IS630 family transposase	NA	NA	NA	NA
AUX72501.1\|1698051_1698612_+\|tail	phage tail protein	F1BUK2	Cronobacter_phage	9.3e-30	44.2
AUX72502.1\|1698732_1699569_-	hypothetical protein	NA	NA	NA	NA
AUX72503.1\|1700793_1701929_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.9e-80	55.8
AUX72504.1\|1702050_1702971_-	Mig-14 family protein	NA	NA	NA	NA
AUX72505.1\|1703344_1703725_+\|holin	holin	F1C592	Cronobacter_phage	2.2e-30	57.9
AUX72506.1\|1703711_1704002_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	8.8e-16	48.9
AUX72507.1\|1704501_1704747_-	DinI family protein	K7PKR6	Enterobacteria_phage	2.5e-24	68.8
AUX72508.1\|1705048_1705723_-	hypothetical protein	NA	NA	NA	NA
AUX72509.1\|1705719_1706664_-	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
AUX72510.1\|1706858_1707494_+	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
AUX72511.1\|1708152_1708401_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
AUX72512.1\|1708487_1710164_-	alpha,alpha-trehalase TreA	NA	NA	NA	NA
AUX72513.1\|1710446_1711376_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
AUX72514.1\|1711512_1711776_-	hypothetical protein	NA	NA	NA	NA
AUX72515.1\|1712205_1713852_-	fumarate hydratase	NA	NA	NA	NA
AUX72516.1\|1714033_1715545_-	anion permease	NA	NA	NA	NA
AUX72517.1\|1716122_1718900_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	1.8e-65	30.9
AUX72518.1\|1718973_1719942_+	FAD:protein FMN transferase	NA	NA	NA	NA
AUX72519.1\|1719922_1720642_-	two-component system response regulator DcuR	NA	NA	NA	NA
AUX74484.1\|1720638_1722279_-	two-component system sensor histidine kinase DcuS	NA	NA	NA	NA
AUX72520.1\|1722636_1722867_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
AUX72521.1\|1722882_1723116_-	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
AUX72522.1\|1723617_1724767_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-48	40.4

DBSCAN-SWA_6

1982191 : 2008850

Pseudoalteromonas_phage(15.0%)

tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX72733.1\|1982191_1982452_+	HicB family protein	Q775F5	Haemophilus_virus	1.8e-15	35.6
AUX72734.1\|1982501_1982735_+	hypothetical protein	NA	NA	NA	NA
AUX72735.1\|1982668_1983514_+	acyltransferase	NA	NA	NA	NA
AUX72736.1\|1984222_1985338_+	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	1.4e-32	31.8
AUX72737.1\|1985358_1986294_-\|tail	phage tail protein	A0A0F6R6B6	Escherichia_coli_O157_typing_phage	1.7e-28	44.5
AUX72738.1\|1986297_1986951_-	DUF2612 domain-containing protein	Q6IWQ4	Burkholderia_phage	2.3e-35	40.5
AUX72739.1\|1986947_1988135_-	hypothetical protein	A0A2H5BG53	Pseudoalteromonas_phage	2.6e-74	38.7
AUX72740.1\|1988127_1988472_-	hypothetical protein	NA	NA	NA	NA
AUX72741.1\|1988468_1989161_-	hypothetical protein	A0A2H4P6V3	Pseudomonas_phage	6.3e-28	35.3
AUX72742.1\|1989164_1989980_-	hypothetical protein	Q6IWQ0	Burkholderia_phage	1.7e-43	37.7
AUX72743.1\|1989972_1990266_-	hypothetical protein	NA	NA	NA	NA
AUX72744.1\|1990272_1990782_-	hypothetical protein	NA	NA	NA	NA
AUX72745.1\|1990778_1992455_-	hypothetical protein	A0A2H5BG44	Pseudoalteromonas_phage	1.1e-20	28.9
AUX72746.1\|1992537_1992996_-	hypothetical protein	NA	NA	NA	NA
AUX72747.1\|1993037_1993490_-	hypothetical protein	A1Z014	Burkholderia_virus	2.5e-25	44.1
AUX72748.1\|1993500_1994988_-	DUF3383 domain-containing protein	A0A088C3U1	Shewanella_sp._phage	9.9e-79	36.1
AUX72749.1\|1995002_1995518_-	hypothetical protein	NA	NA	NA	NA
AUX72750.1\|1995507_1995876_-	hypothetical protein	NA	NA	NA	NA
AUX72751.1\|1995875_1996334_-	hypothetical protein	A0A2H5BG34	Pseudoalteromonas_phage	1.9e-12	30.9
AUX72752.1\|1996330_1996771_-	DUF4054 domain-containing protein	NA	NA	NA	NA
AUX72753.1\|1996767_1997112_-	hypothetical protein	NA	NA	NA	NA
AUX72754.1\|1997780_1997993_-	hypothetical protein	NA	NA	NA	NA
AUX72755.1\|1997910_1998318_-	DUF2570 domain-containing protein	NA	NA	NA	NA
AUX72756.1\|1998314_1998938_-	endolysin	F1C591	Cronobacter_phage	2.1e-67	60.4
AUX72757.1\|1998941_1999277_-\|holin	phage holin, lambda family	Q2A0C6	Sodalis_phage	1.2e-16	43.3
AUX72758.1\|1999448_2000135_-	antitermination protein	I6PDF8	Cronobacter_phage	3.8e-25	36.0
AUX72759.1\|2000134_2000614_-	hypothetical protein	E5AGG0	Erwinia_phage	4.8e-35	74.5
AUX72760.1\|2000610_2001210_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	5.2e-79	71.4
AUX72761.1\|2001267_2001465_-	hypothetical protein	NA	NA	NA	NA
AUX72762.1\|2001812_2001968_-	small toxic polypeptide	NA	NA	NA	NA
AUX72763.1\|2002148_2002391_-	hypothetical protein	A0A1V0E8D1	Vibrio_phage	3.3e-16	58.4
AUX72764.1\|2002392_2003139_-	hypothetical protein	NA	NA	NA	NA
AUX72765.1\|2003140_2004049_-	hypothetical protein	A0A248SL49	Klebsiella_phage	1.3e-52	40.1
AUX72766.1\|2004045_2004513_-	hypothetical protein	NA	NA	NA	NA
AUX72767.1\|2004509_2004713_-	transcriptional regulator Cro	NA	NA	NA	NA
AUX72768.1\|2004796_2005198_+	transcriptional regulator	K7PM82	Enterobacteria_phage	3.3e-13	50.0
AUX72769.1\|2005944_2006268_+	DNA breaking-rejoining protein	NA	NA	NA	NA
AUX72770.1\|2006350_2006605_+	hypothetical protein	NA	NA	NA	NA
AUX72771.1\|2006606_2008850_+	exodeoxyribonuclease VIII	H9C157	Pectobacterium_phage	1.2e-112	35.3

DBSCAN-SWA_7

2373536 : 2380467

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX73085.1\|2373536_2374277_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	3.7e-10	30.2
AUX73086.1\|2374276_2375044_-	ABC transporter permease	NA	NA	NA	NA
AUX73087.1\|2375116_2376052_-	NAD-dependent dehydratase	A0A2K9L5H6	Tupanvirus	5.6e-19	25.5
AUX73088.1\|2376170_2377037_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.3e-107	66.7
AUX73089.1\|2377038_2378109_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.3e-99	54.4
AUX73090.1\|2378502_2379516_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	4.1e-76	45.0
AUX73091.1\|2379570_2380467_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	6.2e-44	40.3

DBSCAN-SWA_8

2573538 : 2631541

Shigella_phage(42.86%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX73242.1\|2573538_2574354_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AUX73243.1\|2574353_2575364_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AUX73244.1\|2575474_2576626_-	4-phosphoerythronate dehydrogenase PdxB	A0A285PXZ1	Cedratvirus	8.9e-19	27.7
AUX73245.1\|2576622_2576823_-	transcriptional regulator	NA	NA	NA	NA
AUX74512.1\|2577051_2577963_+	EamA/RhaT family transporter	NA	NA	NA	NA
AUX73246.1\|2578096_2579134_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AUX73247.1\|2579135_2579588_-	rhodanese	NA	NA	NA	NA
AUX73248.1\|2581223_2582900_-	L-2,4-diaminobutyrate decarboxylase	NA	NA	NA	NA
AUX73249.1\|2583288_2584512_-	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AUX73250.1\|2584668_2586669_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AUX73251.1\|2586826_2587867_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AUX73252.1\|2587965_2588241_-	hypothetical protein	NA	NA	NA	NA
AUX73253.1\|2588651_2588909_-	hypothetical protein	NA	NA	NA	NA
AUX73254.1\|2589319_2589601_-	hypothetical protein	NA	NA	NA	NA
AUX73255.1\|2589632_2590181_-	elongation factor P hydroxylase	NA	NA	NA	NA
AUX73256.1\|2590269_2591067_-	hypothetical protein	NA	NA	NA	NA
AUX73257.1\|2591075_2591903_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AUX73258.1\|2591907_2592993_-	chorismate synthase	A0A291AU41	Pandoravirus	2.1e-86	45.8
AUX73259.1\|2593018_2593951_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AUX73260.1\|2594151_2594703_+	endonuclease SmrB	NA	NA	NA	NA
AUX73261.1\|2594787_2595270_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AUX73262.1\|2595439_2597587_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AUX73263.1\|2597586_2598897_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AUX73264.1\|2599363_2600698_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AUX73265.1\|2600773_2601535_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AUX73266.1\|2601574_2602780_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
AUX73267.1\|2602776_2603238_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
AUX73268.1\|2603234_2603792_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
AUX73269.1\|2603788_2605744_-	c-type cytochrome biogenesis protein CcmF	NA	NA	NA	NA
AUX73270.1\|2605740_2606223_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
AUX73271.1\|2606219_2606453_-	heme exporter protein CcmD	NA	NA	NA	NA
AUX73272.1\|2606449_2607193_-	heme ABC transporter permease	NA	NA	NA	NA
AUX73273.1\|2607283_2607943_-	heme exporter protein CcmB	NA	NA	NA	NA
AUX73274.1\|2607942_2608557_-	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2H4UU96	Bodo_saltans_virus	1.2e-09	26.0
AUX73275.1\|2609109_2610318_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	9.3e-51	49.7
AUX73276.1\|2610579_2611371_-	hypothetical protein	NA	NA	NA	NA
AUX73277.1\|2611517_2612652_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.9e-80	55.8
AUX73278.1\|2613401_2614661_-	sensor histidine kinase	NA	NA	NA	NA
AUX73279.1\|2614660_2615113_-	oxidoreductase	NA	NA	NA	NA
AUX73280.1\|2615118_2615550_-	N-acetyltransferase	NA	NA	NA	NA
AUX74513.1\|2615559_2616339_-	response regulator	NA	NA	NA	NA
AUX73281.1\|2616751_2617901_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.1e-48	40.4
AUX73282.1\|2617919_2619088_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	6.9e-176	95.1
AUX73283.1\|2620787_2627087_-	glucosyltransferase	NA	NA	NA	NA
AUX73284.1\|2627383_2628628_-	mechanosensitive ion channel family protein	NA	NA	NA	NA
AUX73285.1\|2629117_2630002_-	gluconolactonase	NA	NA	NA	NA
AUX73286.1\|2630500_2631541_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_9

2717308 : 2727636

Helicobacter_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX73338.1\|2717308_2719987_+	DNA primase	A0A1S5RF71	Helicobacter_phage	3.2e-19	24.5
AUX73339.1\|2720201_2721257_+	recombinase XerD	A0A0K2CP59	Brevibacillus_phage	2.7e-14	27.3
AUX73340.1\|2721517_2721760_+	type II toxin-antitoxin system antitoxin, RelB/DinJ family	A0A2H4JBG1	uncultured_Caudovirales_phage	1.1e-14	47.5
AUX73341.1\|2721749_2722034_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	69.1
AUX74519.1\|2722538_2722844_+	hypothetical protein	NA	NA	NA	NA
AUX73342.1\|2722846_2723029_+	hypothetical protein	NA	NA	NA	NA
AUX73343.1\|2723535_2723988_+	SMI1/KNR4 family protein	NA	NA	NA	NA
AUX73344.1\|2724047_2724350_-	type I addiction module toxin, SymE family	NA	NA	NA	NA
AUX73345.1\|2724428_2724830_-	transcriptional regulator	A0A0A7AQV8	Bacillus_phage	1.8e-06	33.7
AUX73346.1\|2724942_2727636_+	DNA primase	A0A1S5RF71	Helicobacter_phage	7.7e-21	24.8

DBSCAN-SWA_10

3244137 : 3312077

Salmonella_phage(46.15%)

plate,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX73768.1\|3244137_3245178_+\|transposase	IS630 family transposase	NA	NA	NA	NA
AUX74542.1\|3245633_3246434_-	hypothetical protein	NA	NA	NA	NA
AUX74543.1\|3246571_3246964_-	hypothetical protein	NA	NA	NA	NA
AUX73769.1\|3247092_3247806_-	hypothetical protein	NA	NA	NA	NA
AUX73770.1\|3247812_3248499_-	hypothetical protein	A0A1S6L3A8	Erwinia_phage	8.8e-14	29.6
AUX73771.1\|3248398_3250327_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	2.5e-45	30.3
AUX73772.1\|3250588_3251665_-	hypothetical protein	NA	NA	NA	NA
AUX73773.1\|3251688_3252123_-	hypothetical protein	NA	NA	NA	NA
AUX73774.1\|3252150_3253218_-	flagellar biosynthesis protein FlgH	NA	NA	NA	NA
AUX73775.1\|3253240_3255199_-	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	1.6e-44	27.3
AUX73776.1\|3255245_3256667_-	serine/threonine protein kinase	A0A1X9WHY5	Cercopithecine_herpesvirus	8.2e-06	33.3
AUX73777.1\|3256696_3259312_-	type VI secretion system ATPase TssH	A0A248SJW6	Salicola_phage	2.1e-79	31.0
AUX73778.1\|3259406_3259727_-	hypothetical protein	NA	NA	NA	NA
AUX73779.1\|3259739_3260486_-	DUF4225 domain-containing protein	NA	NA	NA	NA
AUX73780.1\|3260527_3261586_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
AUX73781.1\|3261582_3263457_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
AUX73782.1\|3263475_3264042_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
AUX73783.1\|3264038_3264860_-	protein of avirulence locus ImpE	NA	NA	NA	NA
AUX73784.1\|3264869_3265838_-	hypothetical protein	NA	NA	NA	NA
AUX73785.1\|3265855_3266650_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
AUX73786.1\|3266646_3268467_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
AUX73787.1\|3268817_3269219_-	DUF1311 domain-containing protein	NA	NA	NA	NA
AUX73788.1\|3270294_3271077_-	hypothetical protein	NA	NA	NA	NA
AUX74544.1\|3271247_3271640_-	DUF1311 domain-containing protein	NA	NA	NA	NA
AUX73789.1\|3271708_3272446_-	hypothetical protein	NA	NA	NA	NA
AUX73790.1\|3272470_3272914_-	hypothetical protein	NA	NA	NA	NA
AUX73791.1\|3272968_3273451_-	Hcp1 family type VI secretion system effector	NA	NA	NA	NA
AUX73792.1\|3273722_3273998_-	hypothetical protein	NA	NA	NA	NA
AUX73793.1\|3273994_3275494_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
AUX73794.1\|3275497_3276034_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
AUX73795.1\|3276096_3277104_-	type VI secretion system protein TssA	NA	NA	NA	NA
AUX74545.1\|3277121_3277835_-	type VI secretion system-associated protein TagF	NA	NA	NA	NA
AUX73796.1\|3277848_3281481_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
AUX73797.1\|3281484_3282726_-	type VI secretion system protein TssL	NA	NA	NA	NA
AUX73798.1\|3282743_3284087_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
AUX73799.1\|3284106_3284619_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
AUX73800.1\|3284643_3285147_-	hypothetical protein	NA	NA	NA	NA
AUX73801.1\|3286126_3286807_-	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
AUX73802.1\|3286821_3287262_-	ribosomal-protein-alanine N-acetyltransferase RimI	NA	NA	NA	NA
AUX74547.1\|3287224_3287647_-	DNA polymerase III subunit psi	NA	NA	NA	NA
AUX74546.1\|3287744_3288845_+	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA	NA	NA	NA
AUX73803.1\|3289449_3289683_-	DUF1435 domain-containing protein	NA	NA	NA	NA
AUX73804.1\|3289928_3291026_+	GGDEF domain-containing protein	NA	NA	NA	NA
AUX73805.1\|3291191_3292397_-	MFS transporter	NA	NA	NA	NA
AUX73806.1\|3293206_3293647_+	DUF2946 domain-containing protein	NA	NA	NA	NA
AUX73807.1\|3295186_3296173_-	nucleoside hydrolase	NA	NA	NA	NA
AUX73808.1\|3296187_3297204_-	LacI family transcriptional regulator	NA	NA	NA	NA
AUX73809.1\|3297285_3298680_-	MFS transporter	NA	NA	NA	NA
AUX73810.1\|3299059_3299254_+	hypothetical protein	NA	NA	NA	NA
AUX73811.1\|3299322_3299769_+	hypothetical protein	NA	NA	NA	NA
AUX73812.1\|3300520_3300736_-	late control protein B	E5G6Q4	Salmonella_phage	2.0e-20	74.6
AUX73813.1\|3302224_3302752_+	phospholipase D family protein	NA	NA	NA	NA
AUX73814.1\|3303775_3304198_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	5.5e-43	68.6
AUX73815.1\|3304194_3304704_-	glycoside hydrolase	E5G6N1	Salmonella_phage	3.0e-67	71.4
AUX74548.1\|3304684_3304900_-	hypothetical protein	E5G6N0	Salmonella_phage	3.9e-21	69.0
AUX73816.1\|3305481_3306616_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	6.9e-80	55.8
AUX73817.1\|3306752_3306944_-	hypothetical protein	A0A1S6L006	Salmonella_phage	9.5e-19	82.5
AUX73818.1\|3307673_3308288_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.8e-34	42.1
AUX73819.1\|3308831_3312077_-	ATP-dependent helicase	A0A1B1ISM1	uncultured_Mediterranean_phage	1.3e-30	25.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage