CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024015	Helicobacter pylori strain 7.13_D1a chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488983 : 527512

Helicobacter_phage(40.0%)

transposase,protease,integrase

attL 496021:496040|attR 527348:527367

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH00069.1\|488983_490132_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVH00070.1\|490100_490568_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVH00071.1\|493330_494398_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVH00072.1\|494714_495518_-	hypothetical protein	NA	NA	NA	NA
AVH00073.1\|495489_495741_-	hypothetical protein	NA	NA	NA	NA
AVH00074.1\|495878_496559_-\|protease	CAAX protease	NA	NA	NA	NA
496021:496040	attL	NA	NA	NA	NA
AVH00075.1\|496779_497133_+	hypothetical protein	NA	NA	NA	NA
AVH01018.1\|497164_497794_+	hypothetical protein	NA	NA	NA	NA
AVH00076.1\|497798_499076_-	hypothetical protein	NA	NA	NA	NA
AVH00077.1\|499072_500329_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVH00078.1\|500325_501759_-	hypothetical protein	NA	NA	NA	NA
AVH00079.1\|503796_504849_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVH00080.1\|505650_506319_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVH00081.1\|506365_506743_+	hypothetical protein	NA	NA	NA	NA
AVH00082.1\|506720_507386_+	hypothetical protein	NA	NA	NA	NA
AVH00083.1\|507459_508263_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVH00084.1\|508232_508718_-	hypothetical protein	NA	NA	NA	NA
AVH00085.1\|508757_510818_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVH00086.1\|512965_513484_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVH00087.1\|513480_514425_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVH00088.1\|514429_514705_-	hypothetical protein	NA	NA	NA	NA
AVH00089.1\|514721_515684_-	hypothetical protein	NA	NA	NA	NA
AVH00090.1\|515696_517937_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVH00091.1\|517920_519129_-	hypothetical protein	NA	NA	NA	NA
AVH00092.1\|519125_520781_-	type VI secretion protein	NA	NA	NA	NA
AVH00093.1\|520777_521914_-	hypothetical protein	NA	NA	NA	NA
AVH00094.1\|521906_522047_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH00095.1\|524620_524857_-	hypothetical protein	NA	NA	NA	NA
AVH00096.1\|524868_525132_-	competence protein ComB	NA	NA	NA	NA
AVH00097.1\|525143_525428_-	hypothetical protein	NA	NA	NA	NA
AVH00098.1\|525405_525783_-	hypothetical protein	NA	NA	NA	NA
AVH00099.1\|525775_526006_-	hypothetical protein	NA	NA	NA	NA
AVH00100.1\|526008_526833_-\|integrase	integrase	NA	NA	NA	NA
AVH00101.1\|526846_527512_+\|protease	CAAX protease	NA	NA	NA	NA
527348:527367	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage