CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024016	Helicobacter pylori strain 7.13_D1b chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

489017 : 527542

Helicobacter_phage(40.0%)

transposase,protease,integrase

attL 496055:496074|attR 527378:527397

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH01475.1\|489017_490166_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVH01476.1\|490134_490602_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVH01477.1\|493364_494432_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVH01478.1\|494748_495552_-	hypothetical protein	NA	NA	NA	NA
AVH01479.1\|495523_495775_-	hypothetical protein	NA	NA	NA	NA
AVH01480.1\|495912_496593_-\|protease	CAAX protease	NA	NA	NA	NA
496055:496074	attL	NA	NA	NA	NA
AVH01481.1\|496813_497827_+	hypothetical protein	NA	NA	NA	NA
AVH01482.1\|497831_499109_-	hypothetical protein	NA	NA	NA	NA
AVH01483.1\|499105_500362_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVH01484.1\|500358_501792_-	hypothetical protein	NA	NA	NA	NA
AVH01485.1\|501801_503829_-	hypothetical protein	NA	NA	NA	NA
AVH01486.1\|503828_504881_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVH01487.1\|505682_506351_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVH02466.1\|506397_506775_+	hypothetical protein	NA	NA	NA	NA
AVH01488.1\|506752_507418_+	hypothetical protein	NA	NA	NA	NA
AVH01489.1\|507491_508295_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVH01490.1\|508264_508750_-	hypothetical protein	NA	NA	NA	NA
AVH01491.1\|508789_510850_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVH01492.1\|510870_513000_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVH01493.1\|512996_513515_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVH01494.1\|513511_514456_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVH01495.1\|514460_514736_-	hypothetical protein	NA	NA	NA	NA
AVH01496.1\|514752_515715_-	hypothetical protein	NA	NA	NA	NA
AVH01497.1\|515727_517968_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVH01498.1\|517951_519160_-	hypothetical protein	NA	NA	NA	NA
AVH01499.1\|519156_520812_-	type VI secretion protein	NA	NA	NA	NA
AVH01500.1\|520808_521945_-	hypothetical protein	NA	NA	NA	NA
AVH01501.1\|521937_522078_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH01502.1\|522074_524651_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVH01503.1\|524650_524887_-	hypothetical protein	NA	NA	NA	NA
AVH01504.1\|524898_525162_-	competence protein ComB	NA	NA	NA	NA
AVH01505.1\|525173_525458_-	hypothetical protein	NA	NA	NA	NA
AVH01506.1\|525435_525813_-	hypothetical protein	NA	NA	NA	NA
AVH01507.1\|525805_526036_-	hypothetical protein	NA	NA	NA	NA
AVH01508.1\|526038_526863_-\|integrase	integrase	NA	NA	NA	NA
AVH01509.1\|526876_527542_+\|protease	CAAX protease	NA	NA	NA	NA
527378:527397	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage