CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024017	Helicobacter pylori strain 7.13_D1c chromosome, complete genome	0 crisprs	cas2,cas3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488992 : 527517

Helicobacter_phage(40.0%)

integrase,protease,transposase

attL 496030:496049|attR 527353:527372

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH02932.1\|488992_490141_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVH02933.1\|490109_490577_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVH02934.1\|493339_494407_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVH02935.1\|494723_495527_-	hypothetical protein	NA	NA	NA	NA
AVH02936.1\|495498_495750_-	hypothetical protein	NA	NA	NA	NA
AVH02937.1\|495887_496568_-\|protease	CAAX protease	NA	NA	NA	NA
496030:496049	attL	NA	NA	NA	NA
AVH02938.1\|496788_497802_+	hypothetical protein	NA	NA	NA	NA
AVH02939.1\|497806_499084_-	hypothetical protein	NA	NA	NA	NA
AVH02940.1\|499080_500337_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVH02941.1\|500333_501767_-	hypothetical protein	NA	NA	NA	NA
AVH02942.1\|501776_503804_-	hypothetical protein	NA	NA	NA	NA
AVH02943.1\|503803_504856_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVH02944.1\|505657_506326_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVH02945.1\|506372_506750_+	hypothetical protein	NA	NA	NA	NA
AVH02946.1\|506727_507393_+	hypothetical protein	NA	NA	NA	NA
AVH02947.1\|507466_508270_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVH02948.1\|508239_508725_-	hypothetical protein	NA	NA	NA	NA
AVH02949.1\|508764_510825_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVH02950.1\|510845_512975_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVH02951.1\|512971_513490_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVH02952.1\|513486_514431_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVH02953.1\|514435_514711_-	hypothetical protein	NA	NA	NA	NA
AVH02954.1\|514727_515690_-	hypothetical protein	NA	NA	NA	NA
AVH02955.1\|515702_517943_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVH02956.1\|517926_519135_-	hypothetical protein	NA	NA	NA	NA
AVH02957.1\|519131_520787_-	type VI secretion protein	NA	NA	NA	NA
AVH02958.1\|520783_521920_-	hypothetical protein	NA	NA	NA	NA
AVH02959.1\|521912_522053_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH02960.1\|522049_524626_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVH02961.1\|524625_524862_-	hypothetical protein	NA	NA	NA	NA
AVH02962.1\|524873_525137_-	competence protein ComB	NA	NA	NA	NA
AVH02963.1\|525148_525433_-	hypothetical protein	NA	NA	NA	NA
AVH02964.1\|525410_525788_-	hypothetical protein	NA	NA	NA	NA
AVH02965.1\|525780_526011_-	hypothetical protein	NA	NA	NA	NA
AVH02966.1\|526013_526838_-\|integrase	integrase	NA	NA	NA	NA
AVH02967.1\|526851_527517_+\|protease	CAAX protease	NA	NA	NA	NA
527353:527372	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage