CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024021	Helicobacter pylori strain 7.13_D3a chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488984 : 527509

Helicobacter_phage(40.0%)

integrase,transposase,protease

attL 496022:496041|attR 527345:527364

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH08824.1\|488984_490133_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVH08825.1\|490101_490569_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVH08826.1\|493331_494399_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVH08827.1\|494715_495519_-	hypothetical protein	NA	NA	NA	NA
AVH08828.1\|495490_495742_-	hypothetical protein	NA	NA	NA	NA
AVH08829.1\|495879_496560_-\|protease	CAAX protease	NA	NA	NA	NA
496022:496041	attL	NA	NA	NA	NA
AVH08830.1\|496780_497794_+	hypothetical protein	NA	NA	NA	NA
AVH08831.1\|497798_499076_-	hypothetical protein	NA	NA	NA	NA
AVH08832.1\|499072_500329_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVH08833.1\|500325_501759_-	hypothetical protein	NA	NA	NA	NA
AVH08834.1\|501768_503796_-	hypothetical protein	NA	NA	NA	NA
AVH08835.1\|503795_504848_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVH08836.1\|505649_506318_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVH08837.1\|506364_506742_+	hypothetical protein	NA	NA	NA	NA
AVH08838.1\|506719_507385_+	hypothetical protein	NA	NA	NA	NA
AVH08839.1\|507458_508262_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVH08840.1\|508231_508717_-	hypothetical protein	NA	NA	NA	NA
AVH08841.1\|508756_510817_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVH08842.1\|510837_512967_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVH08843.1\|512963_513482_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVH08844.1\|513478_514423_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVH08845.1\|514427_514703_-	hypothetical protein	NA	NA	NA	NA
AVH08846.1\|514719_515682_-	hypothetical protein	NA	NA	NA	NA
AVH08847.1\|515694_517935_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVH08848.1\|517918_519127_-	hypothetical protein	NA	NA	NA	NA
AVH08849.1\|519123_520779_-	type VI secretion protein	NA	NA	NA	NA
AVH08850.1\|520775_521912_-	hypothetical protein	NA	NA	NA	NA
AVH08851.1\|521904_522045_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH08852.1\|522041_524618_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVH08853.1\|524617_524854_-	hypothetical protein	NA	NA	NA	NA
AVH08854.1\|524865_525129_-	competence protein ComB	NA	NA	NA	NA
AVH08855.1\|525140_525425_-	hypothetical protein	NA	NA	NA	NA
AVH08856.1\|525402_525780_-	hypothetical protein	NA	NA	NA	NA
AVH08857.1\|525772_526003_-	hypothetical protein	NA	NA	NA	NA
AVH08858.1\|526005_526830_-\|integrase	integrase	NA	NA	NA	NA
AVH08859.1\|526843_527509_+\|protease	CAAX protease	NA	NA	NA	NA
527345:527364	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage