CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024023	Helicobacter pylori isolate 7.13_D3c chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488983 : 527508

Helicobacter_phage(40.0%)

integrase,protease,transposase

attL 496021:496040|attR 527344:527363

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH11790.1\|488983_490132_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVH11791.1\|490100_490568_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVH11792.1\|493330_494398_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVH11793.1\|494714_495518_-	hypothetical protein	NA	NA	NA	NA
AVH11794.1\|495489_495741_-	hypothetical protein	NA	NA	NA	NA
AVH11795.1\|495878_496559_-\|protease	CAAX protease	NA	NA	NA	NA
496021:496040	attL	NA	NA	NA	NA
AVH11796.1\|496779_497793_+	hypothetical protein	NA	NA	NA	NA
AVH11797.1\|497797_499075_-	hypothetical protein	NA	NA	NA	NA
AVH11798.1\|499071_500328_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVH11799.1\|500324_501758_-	hypothetical protein	NA	NA	NA	NA
AVH11800.1\|501767_503795_-	hypothetical protein	NA	NA	NA	NA
AVH11801.1\|503794_504847_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVH11802.1\|505648_506317_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVH11803.1\|506363_506741_+	hypothetical protein	NA	NA	NA	NA
AVH11804.1\|506718_507384_+	hypothetical protein	NA	NA	NA	NA
AVH11805.1\|507457_508261_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVH11806.1\|508230_508716_-	hypothetical protein	NA	NA	NA	NA
AVH11807.1\|508755_510816_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVH11808.1\|510836_512966_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVH11809.1\|512962_513481_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVH11810.1\|513477_514422_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVH11811.1\|514426_514702_-	hypothetical protein	NA	NA	NA	NA
AVH11812.1\|514718_515681_-	hypothetical protein	NA	NA	NA	NA
AVH11813.1\|515693_517934_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVH11814.1\|517917_519126_-	hypothetical protein	NA	NA	NA	NA
AVH11815.1\|519122_520778_-	type VI secretion protein	NA	NA	NA	NA
AVH11816.1\|520774_521911_-	hypothetical protein	NA	NA	NA	NA
AVH11817.1\|521903_522044_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVH11818.1\|522040_524617_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVH11819.1\|524616_524853_-	hypothetical protein	NA	NA	NA	NA
AVH11820.1\|524864_525128_-	competence protein ComB	NA	NA	NA	NA
AVH11821.1\|525139_525424_-	hypothetical protein	NA	NA	NA	NA
AVH11822.1\|525401_525779_-	hypothetical protein	NA	NA	NA	NA
AVH11823.1\|525771_526002_-	hypothetical protein	NA	NA	NA	NA
AVH11824.1\|526004_526829_-\|integrase	integrase	NA	NA	NA	NA
AVH11825.1\|526842_527508_+\|protease	CAAX protease	NA	NA	NA	NA
527344:527363	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage