CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024079	Helicobacter pylori strain 7.13_R3c chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488987 : 527512

Helicobacter_phage(40.0%)

integrase,protease,transposase

attL 496025:496044|attR 527348:527367

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG98584.1\|488987_490136_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG98585.1\|490104_490572_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG98586.1\|493334_494402_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG98587.1\|494718_495522_-	hypothetical protein	NA	NA	NA	NA
AVG98588.1\|495493_495745_-	hypothetical protein	NA	NA	NA	NA
AVG98589.1\|495882_496563_-\|protease	CAAX protease	NA	NA	NA	NA
496025:496044	attL	NA	NA	NA	NA
AVG98590.1\|496783_497797_+	hypothetical protein	NA	NA	NA	NA
AVG98591.1\|497801_499079_-	hypothetical protein	NA	NA	NA	NA
AVG98592.1\|499075_500332_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG98593.1\|500328_501762_-	hypothetical protein	NA	NA	NA	NA
AVG98594.1\|501771_503799_-	hypothetical protein	NA	NA	NA	NA
AVG98595.1\|503798_504851_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG98596.1\|505652_506321_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG98597.1\|506367_506745_+	hypothetical protein	NA	NA	NA	NA
AVG98598.1\|506722_507388_+	hypothetical protein	NA	NA	NA	NA
AVG98599.1\|507461_508265_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG98600.1\|508234_508720_-	hypothetical protein	NA	NA	NA	NA
AVG98601.1\|508759_510820_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG98602.1\|510840_512970_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG98603.1\|512966_513485_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG98604.1\|513481_514426_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG98605.1\|514430_514706_-	hypothetical protein	NA	NA	NA	NA
AVG98606.1\|514722_515685_-	hypothetical protein	NA	NA	NA	NA
AVG98607.1\|515697_517938_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG98608.1\|517921_519130_-	hypothetical protein	NA	NA	NA	NA
AVG98609.1\|519126_520782_-	type VI secretion protein	NA	NA	NA	NA
AVG98610.1\|520778_521915_-	hypothetical protein	NA	NA	NA	NA
AVG98611.1\|521907_522048_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG98612.1\|522044_524621_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG98613.1\|524620_524857_-	hypothetical protein	NA	NA	NA	NA
AVG98614.1\|524868_525132_-	competence protein ComB	NA	NA	NA	NA
AVG98615.1\|525143_525428_-	hypothetical protein	NA	NA	NA	NA
AVG98616.1\|525405_525783_-	hypothetical protein	NA	NA	NA	NA
AVG98617.1\|525775_526006_-	hypothetical protein	NA	NA	NA	NA
AVG98618.1\|526008_526833_-\|integrase	integrase	NA	NA	NA	NA
AVG98619.1\|526846_527512_+\|protease	CAAX protease	NA	NA	NA	NA
527348:527367	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage