CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024074	Helicobacter pylori strain 7.13_R2a chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488986 : 527511

Helicobacter_phage(40.0%)

integrase,protease,transposase

attL 496024:496043|attR 527347:527366

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG91163.1\|488986_490135_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG91164.1\|490103_490571_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG91165.1\|493333_494401_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG91166.1\|494717_495521_-	hypothetical protein	NA	NA	NA	NA
AVG91167.1\|495492_495744_-	hypothetical protein	NA	NA	NA	NA
AVG91168.1\|495881_496562_-\|protease	CAAX protease	NA	NA	NA	NA
496024:496043	attL	NA	NA	NA	NA
AVG91169.1\|496782_497796_+	hypothetical protein	NA	NA	NA	NA
AVG91170.1\|497800_499078_-	hypothetical protein	NA	NA	NA	NA
AVG91171.1\|499074_500331_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG91172.1\|500327_501761_-	hypothetical protein	NA	NA	NA	NA
AVG91173.1\|501770_503798_-	hypothetical protein	NA	NA	NA	NA
AVG91174.1\|503797_504850_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG91175.1\|505651_506320_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG91176.1\|506366_506744_+	hypothetical protein	NA	NA	NA	NA
AVG91177.1\|506721_507387_+	hypothetical protein	NA	NA	NA	NA
AVG91178.1\|507460_508264_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG91179.1\|508233_508719_-	hypothetical protein	NA	NA	NA	NA
AVG91180.1\|508758_510819_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG91181.1\|510839_512969_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG91182.1\|512965_513484_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG91183.1\|513480_514425_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG91184.1\|514429_514705_-	hypothetical protein	NA	NA	NA	NA
AVG91185.1\|514721_515684_-	hypothetical protein	NA	NA	NA	NA
AVG91186.1\|515696_517937_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG91187.1\|517920_519129_-	hypothetical protein	NA	NA	NA	NA
AVG91188.1\|519125_520781_-	type VI secretion protein	NA	NA	NA	NA
AVG91189.1\|520777_521914_-	hypothetical protein	NA	NA	NA	NA
AVG91190.1\|521906_522047_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG91191.1\|522043_524620_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG91192.1\|524619_524856_-	hypothetical protein	NA	NA	NA	NA
AVG91193.1\|524867_525131_-	competence protein ComB	NA	NA	NA	NA
AVG91194.1\|525142_525427_-	hypothetical protein	NA	NA	NA	NA
AVG91195.1\|525404_525782_-	hypothetical protein	NA	NA	NA	NA
AVG91196.1\|525774_526005_-	hypothetical protein	NA	NA	NA	NA
AVG91197.1\|526007_526832_-\|integrase	integrase	NA	NA	NA	NA
AVG91198.1\|526845_527511_+\|protease	CAAX protease	NA	NA	NA	NA
527347:527366	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage