CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024077	Helicobacter pylori strain 7.13_R3a chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488989 : 527514

Helicobacter_phage(40.0%)

protease,integrase,transposase

attL 496027:496046|attR 527350:527369

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG95615.1\|488989_490138_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG95616.1\|490106_490574_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG95617.1\|493336_494404_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG95618.1\|494720_495524_-	hypothetical protein	NA	NA	NA	NA
AVG95619.1\|495495_495747_-	hypothetical protein	NA	NA	NA	NA
AVG95620.1\|495884_496565_-\|protease	CAAX protease	NA	NA	NA	NA
496027:496046	attL	NA	NA	NA	NA
AVG95621.1\|496785_497799_+	hypothetical protein	NA	NA	NA	NA
AVG95622.1\|497803_499081_-	hypothetical protein	NA	NA	NA	NA
AVG95623.1\|499077_500334_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG95624.1\|500330_501764_-	hypothetical protein	NA	NA	NA	NA
AVG95625.1\|501773_503801_-	hypothetical protein	NA	NA	NA	NA
AVG95626.1\|503800_504853_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG95627.1\|505654_506323_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG96618.1\|506369_506747_+	hypothetical protein	NA	NA	NA	NA
AVG95628.1\|506724_507390_+	hypothetical protein	NA	NA	NA	NA
AVG95629.1\|507463_508267_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG95630.1\|508236_508722_-	hypothetical protein	NA	NA	NA	NA
AVG95631.1\|508761_510822_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG95632.1\|510842_512972_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG95633.1\|512968_513487_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG95634.1\|513483_514428_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG95635.1\|514432_514708_-	hypothetical protein	NA	NA	NA	NA
AVG95636.1\|514724_515687_-	hypothetical protein	NA	NA	NA	NA
AVG95637.1\|515699_517940_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG95638.1\|517923_519132_-	hypothetical protein	NA	NA	NA	NA
AVG95639.1\|519128_520784_-	type VI secretion protein	NA	NA	NA	NA
AVG95640.1\|520780_521917_-	hypothetical protein	NA	NA	NA	NA
AVG95641.1\|521909_522050_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG95642.1\|522046_524623_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG95643.1\|524622_524859_-	hypothetical protein	NA	NA	NA	NA
AVG95644.1\|524870_525134_-	competence protein ComB	NA	NA	NA	NA
AVG95645.1\|525145_525430_-	hypothetical protein	NA	NA	NA	NA
AVG95646.1\|525407_525785_-	hypothetical protein	NA	NA	NA	NA
AVG95647.1\|525777_526008_-	hypothetical protein	NA	NA	NA	NA
AVG95648.1\|526010_526835_-\|integrase	integrase	NA	NA	NA	NA
AVG95649.1\|526848_527514_+\|protease	CAAX protease	NA	NA	NA	NA
527350:527369	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage