CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024075	Helicobacter pylori strain 7.13_R2b chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488993 : 527518

Helicobacter_phage(40.0%)

integrase,protease,transposase

attL 496031:496050|attR 527354:527373

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG92646.1\|488993_490142_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG92647.1\|490110_490578_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG92648.1\|493340_494408_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG92649.1\|494724_495528_-	hypothetical protein	NA	NA	NA	NA
AVG92650.1\|495499_495751_-	hypothetical protein	NA	NA	NA	NA
AVG92651.1\|495888_496569_-\|protease	CAAX protease	NA	NA	NA	NA
496031:496050	attL	NA	NA	NA	NA
AVG92652.1\|496789_497803_+	hypothetical protein	NA	NA	NA	NA
AVG92653.1\|497807_499085_-	hypothetical protein	NA	NA	NA	NA
AVG92654.1\|499081_500338_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG92655.1\|500334_501768_-	hypothetical protein	NA	NA	NA	NA
AVG92656.1\|501777_503805_-	hypothetical protein	NA	NA	NA	NA
AVG92657.1\|503804_504857_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG92658.1\|505658_506327_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG92659.1\|506373_506751_+	hypothetical protein	NA	NA	NA	NA
AVG92660.1\|506728_507394_+	hypothetical protein	NA	NA	NA	NA
AVG92661.1\|507467_508271_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG92662.1\|508240_508726_-	hypothetical protein	NA	NA	NA	NA
AVG92663.1\|508765_510826_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG92664.1\|510846_512976_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG92665.1\|512972_513491_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG92666.1\|513487_514432_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG92667.1\|514436_514712_-	hypothetical protein	NA	NA	NA	NA
AVG92668.1\|514728_515691_-	hypothetical protein	NA	NA	NA	NA
AVG92669.1\|515703_517944_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG92670.1\|517927_519136_-	hypothetical protein	NA	NA	NA	NA
AVG92671.1\|519132_520788_-	type VI secretion protein	NA	NA	NA	NA
AVG92672.1\|520784_521921_-	hypothetical protein	NA	NA	NA	NA
AVG92673.1\|521913_522054_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG92674.1\|522050_524627_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG92675.1\|524626_524863_-	hypothetical protein	NA	NA	NA	NA
AVG92676.1\|524874_525138_-	competence protein ComB	NA	NA	NA	NA
AVG92677.1\|525149_525434_-	hypothetical protein	NA	NA	NA	NA
AVG92678.1\|525411_525789_-	hypothetical protein	NA	NA	NA	NA
AVG92679.1\|525781_526012_-	hypothetical protein	NA	NA	NA	NA
AVG92680.1\|526014_526839_-\|integrase	integrase	NA	NA	NA	NA
AVG92681.1\|526852_527518_+\|protease	CAAX protease	NA	NA	NA	NA
527354:527373	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage