CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024072	Helicobacter pylori strain 7.13_R1b chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488978 : 527503

Helicobacter_phage(40.0%)

integrase,transposase,protease

attL 496016:496035|attR 527339:527358

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG88195.1\|488978_490127_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG88196.1\|490095_490563_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG88197.1\|493325_494393_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG88198.1\|494709_495513_-	hypothetical protein	NA	NA	NA	NA
AVG88199.1\|495484_495736_-	hypothetical protein	NA	NA	NA	NA
AVG88200.1\|495873_496554_-\|protease	CAAX protease	NA	NA	NA	NA
496016:496035	attL	NA	NA	NA	NA
AVG88201.1\|496774_497788_+	hypothetical protein	NA	NA	NA	NA
AVG88202.1\|497792_499070_-	hypothetical protein	NA	NA	NA	NA
AVG88203.1\|499066_500323_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG88204.1\|500319_501753_-	hypothetical protein	NA	NA	NA	NA
AVG88205.1\|501762_503790_-	hypothetical protein	NA	NA	NA	NA
AVG88206.1\|503789_504842_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG88207.1\|505643_506312_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG88208.1\|506358_506736_+	hypothetical protein	NA	NA	NA	NA
AVG88209.1\|506713_507379_+	hypothetical protein	NA	NA	NA	NA
AVG88210.1\|507452_508256_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG88211.1\|508225_508711_-	hypothetical protein	NA	NA	NA	NA
AVG88212.1\|508750_510811_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG88213.1\|510831_512961_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG88214.1\|512957_513476_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG88215.1\|513472_514417_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG88216.1\|514421_514697_-	hypothetical protein	NA	NA	NA	NA
AVG88217.1\|514713_515676_-	hypothetical protein	NA	NA	NA	NA
AVG88218.1\|515688_517929_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG88219.1\|517912_519121_-	hypothetical protein	NA	NA	NA	NA
AVG88220.1\|519117_520773_-	type VI secretion protein	NA	NA	NA	NA
AVG88221.1\|520769_521906_-	hypothetical protein	NA	NA	NA	NA
AVG88222.1\|521898_522039_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG88223.1\|522035_524612_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG88224.1\|524611_524848_-	hypothetical protein	NA	NA	NA	NA
AVG88225.1\|524859_525123_-	competence protein ComB	NA	NA	NA	NA
AVG88226.1\|525134_525419_-	hypothetical protein	NA	NA	NA	NA
AVG88227.1\|525396_525774_-	hypothetical protein	NA	NA	NA	NA
AVG88228.1\|525766_525997_-	hypothetical protein	NA	NA	NA	NA
AVG88229.1\|525999_526824_-\|integrase	integrase	NA	NA	NA	NA
AVG88230.1\|526837_527503_+\|protease	CAAX protease	NA	NA	NA	NA
527339:527358	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage