CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP024071	Helicobacter pylori strain 7.13_R1a chromosome, complete genome	0 crisprs	cas2,cas3,DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

488985 : 527510

Helicobacter_phage(40.0%)

transposase,integrase,protease

attL 496023:496042|attR 527346:527365

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVG86712.1\|488985_490134_-\|transposase	transposase	G9CU70	Helicobacter_phage	2.4e-213	97.6
AVG86713.1\|490102_490570_-\|transposase	IS200/IS605 family transposase	G9CU69	Helicobacter_phage	3.0e-82	98.7
AVG86714.1\|493332_494400_+\|integrase	integrase	S5W9T9	Leptospira_phage	1.3e-08	26.7
AVG86715.1\|494716_495520_-	hypothetical protein	NA	NA	NA	NA
AVG86716.1\|495491_495743_-	hypothetical protein	NA	NA	NA	NA
AVG86717.1\|495880_496561_-\|protease	CAAX protease	NA	NA	NA	NA
496023:496042	attL	NA	NA	NA	NA
AVG86718.1\|496781_497795_+	hypothetical protein	NA	NA	NA	NA
AVG86719.1\|497799_499077_-	hypothetical protein	NA	NA	NA	NA
AVG86720.1\|499073_500330_-	conjugal transfer protein TrbL	NA	NA	NA	NA
AVG86721.1\|500326_501760_-	hypothetical protein	NA	NA	NA	NA
AVG86722.1\|501769_503797_-	hypothetical protein	NA	NA	NA	NA
AVG86723.1\|503796_504849_-	DUF1738 domain-containing protein	NA	NA	NA	NA
AVG86724.1\|505650_506319_+	ParA family protein	A0A222YXS3	Escherichia_phage	9.1e-24	33.5
AVG86725.1\|506365_506743_+	hypothetical protein	NA	NA	NA	NA
AVG86726.1\|506720_507386_+	hypothetical protein	NA	NA	NA	NA
AVG86727.1\|507459_508263_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
AVG86728.1\|508232_508718_-	hypothetical protein	NA	NA	NA	NA
AVG86729.1\|508757_510818_-	type IA DNA topoisomerase	A0A1V0SB35	Catovirus	1.7e-57	28.6
AVG86730.1\|510838_512968_-	conjugal transfer protein TraG	NA	NA	NA	NA
AVG86731.1\|512964_513483_-	replication regulatory RepB family protein	NA	NA	NA	NA
AVG86732.1\|513479_514424_-	conjugal transfer protein TrbB	NA	NA	NA	NA
AVG86733.1\|514428_514704_-	hypothetical protein	NA	NA	NA	NA
AVG86734.1\|514720_515683_-	hypothetical protein	NA	NA	NA	NA
AVG86735.1\|515695_517936_-	RGS domain-containing GTPase-activating protein	NA	NA	NA	NA
AVG86736.1\|517919_519128_-	hypothetical protein	NA	NA	NA	NA
AVG86737.1\|519124_520780_-	type VI secretion protein	NA	NA	NA	NA
AVG86738.1\|520776_521913_-	hypothetical protein	NA	NA	NA	NA
AVG86739.1\|521905_522046_-	type IV secretion system protein VirB7	NA	NA	NA	NA
AVG86740.1\|522042_524619_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
AVG86741.1\|524618_524855_-	hypothetical protein	NA	NA	NA	NA
AVG86742.1\|524866_525130_-	competence protein ComB	NA	NA	NA	NA
AVG86743.1\|525141_525426_-	hypothetical protein	NA	NA	NA	NA
AVG86744.1\|525403_525781_-	hypothetical protein	NA	NA	NA	NA
AVG86745.1\|525773_526004_-	hypothetical protein	NA	NA	NA	NA
AVG86746.1\|526006_526831_-\|integrase	integrase	NA	NA	NA	NA
AVG86747.1\|526844_527510_+\|protease	CAAX protease	NA	NA	NA	NA
527346:527365	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage