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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025318 Escherichia coli strain FORC_042 chromosome, complete genome 6 crisprs csa3,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4,cas14i 0 10 14 0

Results visualization

1. CP025318
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_1 622635-622752 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_2 1093481-1094363 TypeI-E I-E
14 spacers
cas3,cas8e,cse2gr11,cas7

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_3 1109523-1109735 TypeI-E I-E
3 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_4 2265805-2265928 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_6 3472302-3472446 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025318_7 3896612-3896756 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP025318_5 5.1|3057178|40|CP025318|CRISPRCasFinder 3057178-3057217 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
CP025318_4 4.1|2265848|38|CP025318|CRISPRCasFinder 2265848-2265885 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP034578 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08E, complete sequence 2106-2137 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_AP017930 Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 plasmid pLs13-a, complete sequence 4021-4052 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP043525 Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_01, complete sequence 3312-3343 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP014889 Lactobacillus backii strain TMW 1.1991 plasmid pL11991-8, complete sequence 1082-1113 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NC_015860 Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence 3081-3112 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_AP022342 Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence 143632-143663 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP044372 Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-4, complete sequence 5474-5505 6 0.812
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_MG674581 Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence 148696-148727 6 0.812
CP025318_2 2.19|1093754|32|CP025318|CRISPRCasFinder,CRT 1093754-1093785 32 NC_021289 Burkholderia insecticola plasmid p1, complete sequence 555773-555804 7 0.781
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229180-229234 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229281-229335 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239674-239728 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239775-239829 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230586-230640 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230687-230741 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211556-211610 7 0.873
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211657-211711 7 0.873
CP025318_2 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT 1093998-1094029 32 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 41842-41873 8 0.75
CP025318_2 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT 1093998-1094029 32 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 41837-41868 8 0.75
CP025318_2 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT 1093998-1094029 32 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 57043-57074 8 0.75
CP025318_2 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT 1093998-1094029 32 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 41706-41737 8 0.75
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 MK064565 Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome 8044-8075 8 0.75
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229382-229436 8 0.855
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239876-239930 8 0.855
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230788-230842 8 0.855
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211758-211812 8 0.855
CP025318_2 2.9|1093997|33|CP025318|PILER-CR 1093997-1094029 33 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 41842-41874 9 0.727
CP025318_2 2.9|1093997|33|CP025318|PILER-CR 1093997-1094029 33 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 41837-41869 9 0.727
CP025318_2 2.9|1093997|33|CP025318|PILER-CR 1093997-1094029 33 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 57043-57075 9 0.727
CP025318_2 2.9|1093997|33|CP025318|PILER-CR 1093997-1094029 33 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 41706-41738 9 0.727
CP025318_2 2.20|1093815|32|CP025318|CRISPRCasFinder,CRT 1093815-1093846 32 CP024913 Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence 8579-8610 9 0.719
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP013682 Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence 145876-145907 9 0.719
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 NZ_CP013295 Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence 156592-156623 9 0.719
CP025318_3 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT 1109614-1109645 32 MN694366 Marine virus AFVG_250M1050, complete genome 2162-2193 9 0.719
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 87169-87223 9 0.836
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 158418-158472 9 0.836
CP025318_2 2.6|1093814|33|CP025318|PILER-CR 1093814-1093846 33 CP024913 Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence 8579-8611 10 0.697
CP025318_2 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT 1094303-1094334 32 NZ_CP039902 Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence 33041-33072 10 0.688
CP025318_2 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT 1094303-1094334 32 NZ_CP039893 Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence 217865-217896 10 0.688
CP025318_2 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT 1094303-1094334 32 NZ_KY000025 Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence 208000-208031 10 0.688
CP025318_2 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT 1094303-1094334 32 NZ_KY000029 Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence 208000-208031 10 0.688
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229079-229133 10 0.818
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239573-239627 10 0.818
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230485-230539 10 0.818
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211455-211509 10 0.818
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194092-194146 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204586-204640 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195420-195474 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176375-176429 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27377-27431 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14103-14157 11 0.8
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194185-194239 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 194278-194332 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204679-204733 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 204772-204826 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195513-195567 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 195606-195660 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176468-176522 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 176561-176615 12 0.782
CP025318_7 7.1|3896657|55|CP025318|CRISPRCasFinder 3896657-3896711 55 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 27278-27332 12 0.782

1. spacer 5.1|3057178|40|CP025318|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 4.1|2265848|38|CP025318|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034578 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08E, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

4. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP017930 (Lactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13 plasmid pLs13-a, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

5. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043525 (Lactococcus lactis subsp. lactis bv. diacetylactis strain SD96 plasmid pSD96_01, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

6. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014889 (Lactobacillus backii strain TMW 1.1991 plasmid pL11991-8, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

7. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NC_015860 (Lactococcus lactis subsp. lactis plasmid pIL1, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

8. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

9. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044372 (Klebsiella pneumoniae strain 2018C01-046 plasmid p2018C01-046-4, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

10. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG674581 (Enterococcus faecium strain HL1 plasmid pHLSA, complete sequence) position: , mismatch: 6, identity: 0.812

caaaaaaatagattggaaaacatttagattca-	CRISPR spacer
taaaaaaataaattggaaaaaattt-gatgaat	Protospacer
.*********.********* **** ***  * 

11. spacer 2.19|1093754|32|CP025318|CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gtctgtgatggcctgctcgtgagtccgcggcg	CRISPR spacer
cgcgtg-gatggcctgctcgtcagttcgcgcct	Protospacer
 *. ** ************** ***.**** * 

12. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgcg	Protospacer
 ********************************************.  * ** *.

13. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcgcg	Protospacer
 ********************************************.  * ** *.

14. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgcg	Protospacer
 ********************************************.  * ** *.

15. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcgcg	Protospacer
 ********************************************.  * ** *.

16. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgcg	Protospacer
 ********************************************.  * ** *.

17. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcgcg	Protospacer
 ********************************************.  * ** *.

18. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgcg	Protospacer
 ********************************************.  * ** *.

19. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.873

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcgcg	Protospacer
 ********************************************.  * ** *.

20. spacer 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 8, identity: 0.75

ctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
ttccagaccaatcttctggcgctcaacgccgg	Protospacer
.**.   .**.** ******************

21. spacer 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 8, identity: 0.75

ctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
ttccagaccaatcttctggcgctcaacgccgg	Protospacer
.**.   .**.** ******************

22. spacer 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.75

ctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
ttccagaccaatcttctggcgctcaacgccgg	Protospacer
.**.   .**.** ******************

23. spacer 2.23|1093998|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 8, identity: 0.75

ctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
ttccagaccaatcttctggcgctcaacgccgg	Protospacer
.**.   .**.** ******************

24. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to MK064565 (Sulfolobales Beppu rod-shaped virus 1 clone D, complete genome) position: , mismatch: 8, identity: 0.75

caaaaaaatagattggaaaacatttagattca---	CRISPR spacer
acaaaaaagagactggaaaacattt---tttaatt	Protospacer
  ****** ***.************   **.*   

25. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.855

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtaaacgccttatccggcctacggatggcgcg	Protospacer
 ************************.*******************.  * ** *.

26. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.855

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtaaacgccttatccggcctacggatggcgcg	Protospacer
 ************************.*******************.  * ** *.

27. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.855

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtaaacgccttatccggcctacggatggcgcg	Protospacer
 ************************.*******************.  * ** *.

28. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.855

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
tgcgcacgactgccggatgcggcgtaaacgccttatccggcctacggatggcgcg	Protospacer
 ************************.*******************.  * ** *.

29. spacer 2.9|1093997|33|CP025318|PILER-CR matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 9, identity: 0.727

gctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
cttccagaccaatcttctggcgctcaacgccgg	Protospacer
 .**.   .**.** ******************

30. spacer 2.9|1093997|33|CP025318|PILER-CR matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 9, identity: 0.727

gctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
cttccagaccaatcttctggcgctcaacgccgg	Protospacer
 .**.   .**.** ******************

31. spacer 2.9|1093997|33|CP025318|PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.727

gctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
tttccagaccaatcttctggcgctcaacgccgg	Protospacer
 .**.   .**.** ******************

32. spacer 2.9|1093997|33|CP025318|PILER-CR matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 9, identity: 0.727

gctctttctcagtcatctggcgctcaacgccgg	CRISPR spacer
cttccagaccaatcttctggcgctcaacgccgg	Protospacer
 .**.   .**.** ******************

33. spacer 2.20|1093815|32|CP025318|CRISPRCasFinder,CRT matches to CP024913 (Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence) position: , mismatch: 9, identity: 0.719

aattttttatcctcataaacagcctcagaaaa	CRISPR spacer
tcatttttaccctcattaacagcctcatccat	Protospacer
   ******.****** **********   * 

34. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaaatagattggaaaacatttagattca	CRISPR spacer
agataaaatagattataaaacatttagaagac	Protospacer
 .* **********. ************    

35. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 9, identity: 0.719

caaaaaaatagattggaaaacatttagattca	CRISPR spacer
agataaaatagattataaaacatttagaagac	Protospacer
 .* **********. ************    

36. spacer 3.2|1109614|32|CP025318|PILER-CR,CRISPRCasFinder,CRT matches to MN694366 (Marine virus AFVG_250M1050, complete genome) position: , mismatch: 9, identity: 0.719

caaaaaaatagattggaaaacatttagattca	CRISPR spacer
caaaaaaatagatttgaacacataaaaggcaa	Protospacer
************** *** ****  *.. . *

37. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.836

ggcgca-cgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca--	CRISPR spacer
-gtgcaccgaatgccggatgcggcgtgaacgccttatccgtcctacaat--gcctgat	Protospacer
 *.*** *** ***************************** ****** *  ***..  

38. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.836

ggcgcacgactgccggatgcggcgtgaacgccttatccggc--ctacacttcgccca	CRISPR spacer
ggcgcacaattgccggatgcggcgtgaacgccttatccgcctaccgaactgcgcc--	Protospacer
*******.*.***************************** *  *.. *** ****  

39. spacer 2.6|1093814|33|CP025318|PILER-CR matches to CP024913 (Cyanobacterium sp. HL-69 plasmid pCHL69-1, complete sequence) position: , mismatch: 10, identity: 0.697

gaattttttatcctcataaacagcctcagaaaa	CRISPR spacer
ctcatttttaccctcattaacagcctcatccat	Protospacer
    ******.****** **********   * 

40. spacer 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

41. spacer 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

42. spacer 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

43. spacer 2.28|1094303|32|CP025318|CRISPRCasFinder,CRT matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

44. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.818

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ccagcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgtg	Protospacer
   ******************************************.  * ** ..

45. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.818

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ccagcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgtg	Protospacer
   ******************************************.  * ** ..

46. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.818

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ccagcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgtg	Protospacer
   ******************************************.  * ** ..

47. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.818

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ccagcacgactgccggatgcggcgtgaacgccttatccggcctacggatggcgtg	Protospacer
   ******************************************.  * ** ..

48. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.8

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgaatggcgca	Protospacer
    *** *.***********************************.  * ** **

49. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.8

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgaatggcgca	Protospacer
    *** *.***********************************.  * ** **

50. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.8

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgaatggcgca	Protospacer
    *** *.***********************************.  * ** **

51. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.8

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgaatggcgca	Protospacer
    *** *.***********************************.  * ** **

52. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.8

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ggcgcacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagtgc	Protospacer
*******.**.**********************************.  * . .  

53. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 11, identity: 0.8

-ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
aggcgt-tgattgccggatgcggcgtaaacgccttatccggcctacattcggcaag	Protospacer
 ****. .**.***************.********************.*. **  .

54. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgccaccactgccggatgcggcgtggacgccttatccggcctacgagtggcgcg	Protospacer
    *** ******************.******************.  * ** *.

55. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgagtggcgcg	Protospacer
    *** *.***********************************.  * ** *.

56. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgccaccactgccggatgcggcgtggacgccttatccggcctacgagtggcgcg	Protospacer
    *** ******************.******************.  * ** *.

57. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgagtggcgcg	Protospacer
    *** *.***********************************.  * ** *.

58. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgccaccactgccggatgcggcgtggacgccttatccggcctacgagtggcgcg	Protospacer
    *** ******************.******************.  * ** *.

59. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgagtggcgcg	Protospacer
    *** *.***********************************.  * ** *.

60. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgccaccactgccggatgcggcgtggacgccttatccggcctacgagtggcgcg	Protospacer
    *** ******************.******************.  * ** *.

61. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ttgtcaccattgccggatgcggcgtgaacgccttatccggcctacgagtggcgcg	Protospacer
    *** *.***********************************.  * ** *.

62. spacer 7.1|3896657|55|CP025318|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.782

ggcgcacgactgccggatgcggcgtgaacgccttatccggcctacacttcgccca	CRISPR spacer
ggtacacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagcac	Protospacer
**..***.**.**********************************.  * . *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 848775 : 857379 12 Stx2-converting_phage(40.0%) NA NA
DBSCAN-SWA_2 1126089 : 1134006 7 Escherichia_phage(71.43%) NA NA
DBSCAN-SWA_3 1170907 : 1281111 113 Shigella_phage(34.62%) capsid,plate,portal,tRNA,tail NA
DBSCAN-SWA_4 1677897 : 1729590 71 Enterobacteria_phage(54.0%) protease,portal,integrase,tail,holin,terminase attL 1676519:1676544|attR 1684765:1684790
DBSCAN-SWA_5 1801452 : 1810894 9 Enterobacteria_phage(85.71%) lysis NA
DBSCAN-SWA_6 2351683 : 2409073 69 Enterobacteria_phage(36.21%) capsid,portal,integrase,tail,terminase attL 2348002:2348016|attR 2380437:2380451
DBSCAN-SWA_7 2450735 : 2458250 6 Salmonella_phage(66.67%) NA NA
DBSCAN-SWA_8 2691455 : 2762058 79 Stx2-converting_phage(28.85%) capsid,protease,portal,tail,terminase,transposase NA
DBSCAN-SWA_9 2866547 : 2939835 93 Enterobacteria_phage(30.16%) capsid,portal,head,tRNA,tail,terminase NA
DBSCAN-SWA_10 3063511 : 3123952 75 Enterobacteria_phage(34.78%) tail,capsid,terminase,portal NA
DBSCAN-SWA_11 3140250 : 3189212 59 Enterobacteria_phage(45.24%) capsid,protease,portal,head,tail,terminase,transposase NA
DBSCAN-SWA_12 3424161 : 3470818 68 Enterobacteria_phage(58.33%) tail,capsid,terminase,portal NA
DBSCAN-SWA_13 3702042 : 3711251 15 Shigella_phage(80.0%) integrase attL 3699767:3699813|attR 3711265:3711311
DBSCAN-SWA_14 4417367 : 4428919 13 Enterobacteria_phage(72.73%) capsid,integrase attL 4407239:4407253|attR 4435475:4435489
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage