CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026341	Mycoplasma hominis isolate 2539 chromosome, complete genome	2 crisprs	NA	5	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026341_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026341_1

103972-104079

Orphan

Consensus_repeat	Method
CCAAGCTGAATACGTGGGTCCGATTCCCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026341_1

>merge|CP026341|1|103972-104079|CRISPRCasFinder
CCAAGCTGAATACGTGGGTCCGATTCCCATCACTTGCACCATTGCGGATGTAGTTCAATGGTAGAACATCAGGTTGCCAATCTGAATACGTGGGTCCGATTCCCATCA

>CP026341|1|1|103972-104079|CRISPRCasFinder
CCAAGCTGAATACGTGGGTCCGATTCCCATCA	CTTGCACCATTGCGGATGTAGTTCAATGGTAGAACATCAGGTTG
CCAATCTGAATACGTGGGTCCGATTCCCATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP026341.1\|AUW36931.1\|99898_100747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223644
CP026341.1\|AUW36941.1\|113450_113954_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36925.1\|90874_92323_+\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36924.1\|90564_90768_+\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36937.1\|108051_108765_+\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36934.1\|105228_105672_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
CP026341.1\|AUW36939.1\|110329_112924_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237258
CP026341.1\|AUW36929.1\|97949_98795_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36938.1\|108807_110238_+\|trigger-factor	unknown	unknown	gnl\|CDD\|272913
CP026341.1\|AUW36932.1\|101106_102033_+\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|119400
CP026341.1\|AUW36942.1\|114037_116041_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|235943
CP026341.1\|AUW36927.1\|94739_96902_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367390
CP026341.1\|AUW36930.1\|98893_99544_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW36940.1\|112932_113364_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239520
CP026341.1\|AUW36926.1\|92338_94480_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367390
CP026341.1\|AUW36935.1\|105671_106364_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
CP026341.1\|AUW36928.1\|97312_97912_+\|30S-ribosomal-protein-S4	unknown	unknown	gnl\|CDD\|235411
CP026341.1\|AUW36936.1\|106474_107848_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP026341.1\|AUW36933.1\|104532_105126_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|234946
CP026341.1\|AUW37418.1\|102022_103729_+\|excinuclease-ABC-subunit-C	unknown	unknown	gnl\|CDD\|234792

Protein	Function_ID	Function_description	E-value
CP026341.1\|AUW36931.1\|99898_100747_-\|hypothetical-protein	gnl\|CDD\|223644	COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].	8.99499e-38
CP026341.1\|AUW36942.1\|114037_116041_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|235943	PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated.	0
CP026341.1\|AUW36934.1\|105228_105672_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	9.13571e-71
CP026341.1\|AUW36939.1\|110329_112924_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237258	PRK12903, secA, preprotein translocase subunit SecA; Reviewed.	0
CP026341.1\|AUW36938.1\|108807_110238_+\|trigger-factor	gnl\|CDD\|272913	TIGR00115, tig, trigger factor. Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome. [Protein fate, Protein folding and stabilization].	1.29183e-87
CP026341.1\|AUW37418.1\|102022_103729_+\|excinuclease-ABC-subunit-C	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	3.90626e-101
CP026341.1\|AUW36927.1\|94739_96902_-\|hypothetical-protein	gnl\|CDD\|367390	pfam03202, Lipoprotein_10, Putative mycoplasma lipoprotein, C-terminal region.	2.59973e-33
CP026341.1\|AUW36935.1\|105671_106364_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	3.50232e-108
CP026341.1\|AUW36940.1\|112932_113364_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239520	cd03428, Ap4A_hydrolase_human_like, Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and catalytic site, and a required divalent cation, Ap4A hydrolase is structurally similar to the other members of the nudix superfamily with some degree of variation. Several regions in the sequences are poorly defined and substrate and metal binding sites are only predicted based on kinetic studies.	5.2794e-30
CP026341.1\|AUW36926.1\|92338_94480_-\|hypothetical-protein	gnl\|CDD\|367390	pfam03202, Lipoprotein_10, Putative mycoplasma lipoprotein, C-terminal region.	2.30275e-37
CP026341.1\|AUW36928.1\|97312_97912_+\|30S-ribosomal-protein-S4	gnl\|CDD\|235411	PRK05327, rpsD, 30S ribosomal protein S4; Validated.	2.04316e-96
CP026341.1\|AUW36936.1\|106474_107848_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP026341.1\|AUW36933.1\|104532_105126_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|234946	PRK01355, PRK01355, azoreductase; Reviewed.	7.50333e-114
CP026341.1\|AUW36932.1\|101106_102033_+\|gamma-glutamylcyclotransferase	gnl\|CDD\|119400	cd06661, GGCT_like, GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avirulence gene that can convert virulent strains of P. syringae to avirulence on Arabidopsis thaliana, soybean, and bean. The family also includes bacterial tellurite-resistance proteins (trgB); tellurium (Te) compounds are used in industrial processes and had been used as antimicrobial agents in the past. Some members have been described proteins involved in cation transport (chaC).	6.88009e-09

>CP026341.1|AUW37418.1|102022_103729_+|excinuclease-ABC-subunit-C
MINKEIIIKNVPHKPGVYLWKNKNGNIIYVGKAKDLKNRMLQYFDIKMQNSFKTEKMRQEIADFSTIILSSEREAFIEERKLIDFYKPFYNVLFPTRDSFPYIRVKLLSTNKLIIDIKNHYKKEPNSIYYGPIPDNKNFKPLIRYLNHLLLSKDGIIIEKQSPEFAKQRFEQAKSIMKFGPDFKKNLKQKINEAIEMNLFEQARFYDQILDLLNYNKQSQNIFIKTIKDIDVFGFYQYQNYMLVNVMIYKNGSLVNSYDYIFEIILNEHEFVNQFIDEFYVNNQLPDQIIIPLKYYELGGFDYNDKVSAPLNKLNKNLIDIAIENASNNIEQKIKNYLSKQTKDNEIFNKLCSYLNVYAERIVLFDNSFLSNTNEVIGAACYFKNGQAFKKFYRFYNLKLNLLRNADVEYMQQTSFNYLKDFGDQVDVVIVDGSIGQINEVKKSMAFLNLNIPLFGLVKNSKHETQKLIDSNNNEIKIDDQDVFNLLSRMQTEVDRFAKYRYNQKQRKSMLSNPLLKIKGIGFKTIEKLINYFGSYKKIQQASFDEISKVANKKVAKLICEDKGESFY
>CP026341.1|AUW36932.1|101106_102033_+|gamma-glutamylcyclotransferase
MSNEEKIYVFSYGTIQDPQFYKELLPNSKPMPAILNGYAKCVDETMYFLLKKDLSSQVKGSVFEISKEELFLIDRWELFPQYQRFQVNVLLTETNEILENVYVYTKLEVGKYYLATDDMGFSRNPNANENNLNAFIEMEKAIKDFPLTDYIFLYDINEQEFEEINKLTHPYAALIIDDKENRNYVAIHGSIFAIKEDGKMYAALTSFSQKSNLNSIFYYQAFNEKLLNSKPEITLKSLYDNTNIDFLINKKPVYYLSSREDKTINETQVGWYENKAFELVEKDFDIDPFIRFNKMLKAFFDTKQKNDK
>CP026341.1|AUW36931.1|99898_100747_-|hypothetical-protein
MGIEEWQEYIYQIEYAMGYYFKNKFLLYQAFTRSSYSNQYGVENNEVLEFIGDSVLSFCVVQLMAEEFGFLKSASQYYNKYEDLEEYCLIANKNESDFTDLKNQIVSNKTLAKKINKLGFAKYLVLGDNDKRNNVANQDSVKADLFEAIIGEIAIDSGWDIKRLKNIIIKMLDIEHFFRDVDCREKRPNKFKLENAINTLKELAERGECSMPIYQISEKPIIDNNGKQWWHCRCNVNFRNLQWMGLWTKYTEGYGTSKKLAKKMAAYNMLCDHYGLPNEYKN
>CP026341.1|AUW36930.1|98893_99544_-|hypothetical-protein
MICSRLLLPLNDVDEYKLIPLVRTIEFTIYTKASKIKHDNEVLLTSISNNLSQYDIDNFQGLYCDINQAFVADNQLFDEETEYQFKFSNSNDEDNYQASYIIQKLIKKLLNFVNDEDLNYCFIIMTKIQNNIIKPFYIYCNPEDAKKELEQLFKTLDNTKYEALLLEAANTFSFELKKFNEEYLNKSSWFYNYIHNQMSLWIEKANDIIFKKLKNN
>CP026341.1|AUW36929.1|97949_98795_-|hypothetical-protein
MRKIKKQLLLFLPYWILLAGFVIYLLVSAIMLKIDGQIDQFNLFPLINQIFLIAPSYTTQLLLTLLSIGLFLNFYFVKRYLSKRSIELDHKEKRRNYLIIILTTAISLIVIFLINVMILFIKQNFYEIVSGHWHSKTPVYLENTKIIEYFYVYIFRLTYWFLLSFLLIKITNNFKKAILFTFVIILIYLISLILGILFYQISHDRLTNYLIIVLSSIVFPEILNTLFSLSNITMTLNPLCNNIYLINLVYIPAFILFIVLITKTKEKQFIFFKKANYVKNK
>CP026341.1|AUW36928.1|97312_97912_+|30S-ribosomal-protein-S4
MSKFVGSMFKKSRRYGISLLENNKEFTKGKKRTTAPGQHGAKRSKPSDYQLHMYEKQKVRYMYGLNERQFKNLFIKVSKKAGVTGINLLQTVESRLDNLVFRAGFARTRAQARQLVNHGHFTVDGCKANIPSMIVKVGSVIELKEALQNNVAIKDAIEVMTVAPWLTKENFKVTFTRLPERNEFAKDINESLIVEYYNR
>CP026341.1|AUW36927.1|94739_96902_-|hypothetical-protein
MKKITKLFTAVAAGLFPATALISASCSTTENSKYGFDQDDDGQLVLATGFSKSNWQGFAIQGIVNTYNNWINDPKFKEERKQAGYLPLKISWLAAGYNTSSVALDLETKNRKDFHNILLNYASAAALYANHKMNLAVNDEDFKKYNIEPVFNNANSLIANNKDNKKWAIPLSRSGEITTIAKALVGKFVKELMALGVKLDSQNSSKLQSYLDYYNNNKQEAEGVDNIWAYSKTTPENLKKLTPEILKELPIMSDKLFDNYSDLINFAIQAKRLYNVDPTLNVLGIDEIPSAINVMATSIIGSDINKNYINPDDNCPATGGYNYDNFIENPNSPQAKLFKKVSSIILKGISENAVWVAQPGVYGSSIFTSYKMAINIGSTAGYRHTFVGNNEKNSTYIIKQANRVLDPTTTIEILNNTPKNNEKWLLKFKQLGVKYPNTIWASDASEKDIKDAKQNPTYIKRVSPLSINKAKKLQGKAGYIVSGSEYSYNKAEDKIELKIGNKITKLQGIYLGKFFNNNENEYFFINQEDVDVKVLKANNFINKEDADWIAAPYSYSNNDKYKGIILQGPSVIPVHANKREDKATRLFINWMYTQPLNNLELYKVDNKGQKTNIQKFPDGTKAIDAFNAFGGYISPTNKYLSQDAKSATKNIADEIAFTNFKHLINEGSIYKPADDIATRKGDQLRDAIKQAARSILSDANVLKVFDYKDFINKIKLLFQE
>CP026341.1|AUW36926.1|92338_94480_-|hypothetical-protein
MKRLGKLFTLMTIGLLPTTTLILSSCSTTENSKYGFDQEDDGQLVLAMGFLKNDWQGLAIQGIVDAYNKWMKDNNKQSEGYLPLKISWLASGYNTSSIALDLKVKNRKDFHNILLNYASAAALYANHKMNLAIDDKDFKKYNIEPVFNVANSLIANNKDNKKWAIPLSRSGEMTTVAKALVGKFVKELMALGVKLDSQNSSKLQSYLDYYNNNKQEAEGVDNIWAYSKTTPEDLKKLTPKILKELPEMSDKLFDNYSDLINFAIQAKRLYNADPTLNVLGIDEIPSAINVMATSIIGSDINKNYINPDDNCLTTGGYNYDNFIENPDSEQAKLFKKVSSIILTGIQEGAVWVAKQGVWGTGIFTTYKLAMVITSTAAYHYTFVSENGKNNNYTIKQANRVLNPNTTIEILNNTPKNNEKWLLKFKQLNDKYSNTIWTADASEKDINDAGQNPRYIKKISSLSTNEAKKLQGKAGFIVSGPEYSYNKVEDKIELKIGNKITKFQGIYLGKFFNNDNNEYFFIDKKDVEVNSLNANNFINKEDVDIISPPYSYSKDEKYRGIILQGPSVIPVHANKREDKATKLFINWMYTQPLNNLKFYKDSSGKNVQTFPDGTKAIDAFNIFSGYISPTKKYLSQDAKSVTKNIAEEIAFTNFKHLINEGSIYKPADDVATRRSGQLRDAIKQAARSILSDANVLKIFDYDEFINKIKLLFQE
>CP026341.1|AUW36925.1|90874_92323_+|hypothetical-protein
MAYGTKNLLIFKNNLIQNKQNLKSFALKLSFYVLKQMPQIKSVILAYDNEYWKKMSQYVTYYLKSRGINVYFLHKNHLGVPFSFLEFSFKKLNALDLAIYFSFFDSKSCKIQTIFKNNQEINFFDFNNFNLNENEYQFLNDEPIYLDTKMLLNDYLNQITSNRVTKYHNSILNLIINKYQYNFELIKKIMGFDDLGYKFINKQRFTNDTIFRVSKTFLTRGMQFNYFARFFINQEVKYYLAYKKLFNYDFKQILNEHLVALYIKFQNTFFSSMLINDNFFKINKIYINQLYPTPILIKVCEMFDMEYSFVLQQQDIILKDNENVLYVDNNDISFLSAEYNYRDSFKTFFYINEMLNYFETQQIDVFDIEKELKLKFLTYKEFEIECSIANLVHFKDKLSIQKSISRIEIDQLTVFENKQDKYIKHIAKITLKTNPQCFISISYNEISCKLKFSVFYSQTTKIFNKIKEYFNKFLLLNKKIRN
>CP026341.1|AUW36924.1|90564_90768_+|hypothetical-protein
MQQKDRIMEKDINVQLVKLSKYQKKSKIKKVFVYIGIGFVLISLIVIMILGVYGIIGGLDGLIKKGL
>CP026341.1|AUW36933.1|104532_105126_+|FMN-dependent-NADH-azoreductase
MAKVLIIYGSVIPRENSISTKMLDLFVDEYKRNNINDEIKILDLNNEDMYSLTDKNFKLFYSEENSDKYINLLKSVDKVVMNAPMINFNIPTIIKAFFDRIAVANKTFSYKYASKGSSIGLLNNLKVQIIATQGAPLGWYPWASHINYLEGMWKFLGANLSESILLAGTKVEPLNKMQPQEIIETISKEIIKKASIF
>CP026341.1|AUW36934.1|105228_105672_+|50S-ribosomal-protein-L11
MAKKVVKKAKLQFAAGQAKPGPALAGVGINMPEFTKAFNDKTRERGNEPVPVLITVYEDKSFEFKLFTSPTSYKLIEAAKIKKGSGVANKEKVGSITIDQLRAIAEYKLPDLNTTKIDSAMKQVAGTAKNMGITVEGYDEWLKGSAN
>CP026341.1|AUW36935.1|105671_106364_+|50S-ribosomal-protein-L1
MAKRITKNIKNVKSLVNKKDVFPLADAIELAKKASFAKFDESVDIAIRLNLDTRKSDQQLRGSVVLPHGTGKSVKVLVATDEVSAQKASLEAGADFVYSSAELPEVLNQDKYDFDVIVADPKMMLVLGKFGKKLGPKGLMPNPKTGTVTINPAKAVEELKKGKANYRADKGGIVHASFGKKSMETNVLAENADTIIQTIKRLKPQTVKGTYVLNITVSTSMGQSVKVRID
>CP026341.1|AUW36936.1|106474_107848_-|phosphopyruvate-hydratase
MSKIIKINAYEVLDSRGNPTVKVELNTELAYSEALVPSGASTGSKEALELRDKGTKYENNWFGGKGVQLACDNVNNIIAKAIIGKEVSKQEELDNLMINLDGTETKSKLGANAILAVSLAIAKAGAIEANLPLYKYLAKLNNQVAYKMPVPMLNVINGGEHASNTIDFQEFMIMPIGAKTFKESLQMANFVFHTLAKLLKQAGHGTQVGDEGGFAPNLHTHEEALDFLVNAIKVAGYNPATSGEKAVAICLDAASSELYHSDTKLYVFKKFKKAIEEKRPGFEKYQNVKYSFTSDEFVEYYGHLIEKYPIISIEDSHDENDWDGFIKMNKRFGNKVQLVGDDLIVTNPKYIQMAIDKHAINASLIKINQIGSLTETFKAITMSQKAGFVAIISHRSGETEDTFIADLAVALNTGEIKTGSLSRTDRIAKYNRLLKIESELGNEAKFEGKNSFYNLKN
>CP026341.1|AUW36937.1|108051_108765_+|hypothetical-protein
MNNIDNNLFFIEEEIKKIEKIAKEDPLKAIYILDEDKKQFSLKEDLDDLDALRDNIEFQLKKQNLITSTKLDTLSLINSLKNKKMGYAFMLSYNELKKRDDIAKYAIEFQDFFKGNDFDSKGFQTLIYDLLVNSNIDFEYDIQNKKINPKKLGSLLKNAEIQKMQDEIIATFDKDISKNKVARQVFSAYLFQNWVAILLHETKDDYLKISHVIEVILGNQTSDSLSEEEKELYNIFK
>CP026341.1|AUW36938.1|108807_110238_+|trigger-factor
MSRTLNKKESELTIEYTIQGEQWENAKEKARKALRANVQIDGFRKGHVPAFEADKRINPIEVYQKALDSILDNIYKEQIISQITKDDEIVGHANLRIKDINEEKAEISFVFPLFPEVKLGDYKKLGVKLGSCELTEKDLNDAKSQIASNYVVMLDSKEPIKEKDQVNFNFKGFIDGKPFDGGEAENFDLVIGSKQFIPGFEDKMIGLKAGEEKDLDLVFPEDYHAKNLAGKSVVFHVKINFVKTPNYPTIDDNFVKEINLPNVKNVAEFEEYVKFIALKNKLANVKNEFINEAVKKLSEQSEVSLSESLVEEEADKYYQNFLNNLKQQQITEKDYYEFSKSTKEESLNVFKKQAQINLKQMFVLGAIAKAESLKVTLEDYEKEVEKLAKTYGLAPEHVKQILKFENVENNLINERISEILLKENDTKAFENFDKLLKEVEEYEAKQTQAIVDEAKRKREEAEKIAKESKENIDEQK
>CP026341.1|AUW36939.1|110329_112924_+|preprotein-translocase-subunit-SecA
MKIFEFKSTEMRIAEATLKRINALEPEISKLSNEELQQKTIEFKSRLKAGETPEQIRPETFAVCREATKRILGKRPFDVQMIGGIILDLGSVAEMKTGEGKTITSIAPIYLNAITGQSVIVSTVNEYLAERDAQEMGQVFNFLGLSVGINKSQMSSELKREAYACDIVYSVHSELGFDYLRDNMAMSKEEKVQRGLDFILLDEVDSILIDEAKTPLIISGGDNDESNLYTIADLFVRTLSQDDYFIDEETKSVYLTDKGIEKANKYFNFKNLYDIENSELVHRIQNALRAHKVMKLDVEYIVRNDKIELVDSFTGRIMEGRAYSEGLQQAIQAKERVEIESETKTLATITYQNFFRLFKKISGMTGTAKTEEKEFIDIYNMRVNVVPTNKPIARFDDKDEIYVDMHSKWKAVTAEVKRVYKKKQPILIGTAQVEDSEILHEYLLSEGIPHTVLNAKQDASEAEIISKAGQVGAVTIATNMAGRGTDIKPSKEALELGGLYVLGTEKAESRRIDNQLKGRSGRQGDVGYTKFFLSLDDQLILRFSVQDHWKEIFKEYGEDPIPGEAIRKAFLRAQKKIEGFNFDNRKSVLNFDDVIRQQRDLIYEQRDLILNRDDLGTIIRKMISVAAEKTVNNPFFIKNNSLDLIEFVKHLNNNFMILTNKEFSVEELVEYDREELIQYLIETWNKCYDQLRQNIIDKYGISSLINSERNIILSVFDAAWQDHINIMDRLRRSTNLVQYSQKNPYQVYTQLGSKKFKELTDRIALECTINLMNNYDAIPSTNTDVDLSWLTNAFEEKTDMAQTTSKNQQALEFINYLLKSERDHLIKEGLNEQEVDDKLKEVERSILKEFQFQLASLQTNEEKK
>CP026341.1|AUW36940.1|112932_113364_-|NUDIX-domain-containing-protein
MKKEKSCGAIIFKEENDNLFVLLVEQTAGHWGFPKGHVEKNETEEETAIREVKEETNIDIKLLKGFREVNKYIIGKLISKEVVYFIAKPTSFDLIKQDSEIKVVEWQDTTNALLYRITYESDCEILKKAVEFYCEYITKNNGF
>CP026341.1|AUW36941.1|113450_113954_-|hypothetical-protein
MDINNIIKNNIKRLLITTAFGFLAILISFLITGIFSIQSLSNNSRLAISCFGQIICGFYVVYYILNFFLVYRFKSEIANKKILKTLLIISIFILICGICFIVNGLVLPSIRKTYIQAVMTKNNNLLQSILWQGKVIKVEMWISSTIFLVAIASSLILCSFIFKKMNN
>CP026341.1|AUW36942.1|114037_116041_+|DNA-polymerase-III-subunit-gamma/tau
MALTNKYLALYRKYRPKIFDDIKGQDHIATTLKNIILNNKLSHAYLFCGPHGNGKTSTAKVFANTINCLHNQSDILKPCEECIKNVDRNLDIIEIDAASNTGIDDIRELKEKIKHLPTQSKYKIYIIDEVHMLSKAAFNALLKTIEDPPSHIIFILATTDPQKIPETILSRVQRFNFKLMTIETLVSQLKDIFNKENIEYEDDAINVIAKLGNGSLRDSLSIADHVAIYCANKVIKKEVVEQLFGIVNIDNKIELLNCMSMHDINKTLNLARELFSQGIDINILINDLINILKEWIIFNKTRDQSLVSTDFKILLQIKIDDAKAHYYIETLIDQLHSIAVSDSPEDYFEILLLKLCNYLSPKEEYKNSAVMPKISNEEFNNFNSQEKQAINKNNIYKSLDLSSIANGFNANNSTIQNSSDNNSTEDLANNSKKIDDLLEKTAEIYSLDQTSEFEVADISNQIISNNQISIDSNVDNQETTDLQISENWKDLVNEDLISKENSENKHVPLETIIDCLLIKQYLKNNMLNDGRSNFTDIDAIKYGMLSQKITDKNEINILSDFKIIFSTNDFILLTCDIDEKVYDLNINSHNENIMAALNKVFDRYLYAYAITKDEILEAKKYWKANINEIRAKKVKPLEDLNLKYNKTVQKDVAWAQEIFGDKFKLNK

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Crispr_ID: CP026341_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026341_3

301644-301724

Orphan

Consensus_repeat	Method
GGATCTTCTGGTTTAACTTCAGGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026341_3

>merge|CP026341|3|301644-301724|CRISPRCasFinder
GGATCTTCTGGTTTAACTTCAGGTGTTGTTCCTGGGTTTTCGCCTTCTGGTTTTTTAGGTTCTTCTGGTTTAACTTCAGGT

>CP026341|3|2|301644-301724|CRISPRCasFinder
GGATCTTCTGGTTTAACTTCAGGT	GTTGTTCCTGGGTTTTCGCCTTCTGGTTTTTTA
GGTTCTTCTGGTTTAACTTCAGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP026341.1\|AUW37087.1\|305117_305990_+\|riboflavin-biosynthesis-protein	unknown	unknown	gnl\|CDD\|235946
CP026341.1\|AUW37085.1\|302648_303512_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|211339
CP026341.1\|AUW37088.1\|306053_310772_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
CP026341.1\|AUW37089.1\|311012_311744_-\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|238190
CP026341.1\|AUW37090.1\|311758_312283_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW37086.1\|303520_304324_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
CP026341.1\|AUW37422.1\|304392_305118_+\|rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|223640
CP026341.1\|AUW37082.1\|294242_294683_-\|transcriptional-regulator-MraZ	unknown	unknown	gnl\|CDD\|234728
CP026341.1\|AUW37080.1\|292267_293335_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW37079.1\|291114_292260_-\|cell-division-protein-FtsZ	unknown	unknown	gnl\|CDD\|276961
CP026341.1\|AUW37093.1\|314468_315017_-\|hypothetical-protein	unknown	unknown	unknown
CP026341.1\|AUW37078.1\|285945_290850_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372554
CP026341.1\|AUW37083.1\|295395_297219_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP026341.1\|AUW37076.1\|276176_276566_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236468
CP026341.1\|AUW37084.1\|297233_299018_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
CP026341.1\|AUW37081.1\|293339_294242_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl\|CDD\|234597
CP026341.1\|AUW37075.1\|270850_275911_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372554
CP026341.1\|AUW37092.1\|313717_314467_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240612
CP026341.1\|AUW37091.1\|312401_313505_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234767
CP026341.1\|AUW37077.1\|276701_285152_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372554

Protein	Function_ID	Function_description	E-value
CP026341.1\|AUW37087.1\|305117_305990_+\|riboflavin-biosynthesis-protein	gnl\|CDD\|235946	PRK07143, PRK07143, hypothetical protein; Provisional.	1.23978e-95
CP026341.1\|AUW37085.1\|302648_303512_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|211339	cd02573, PseudoU_synth_EcTruB, Pseudouridine synthase, Escherichia coli TruB like. This group consists of bacterial pseudouridine synthases similar to E. coli TruB and Mycobacterium tuberculosis TruB. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruB and M. tuberculosis TruB make psi55 in the T loop of tRNAs. Psi55 is nearly universally conserved. E. coli TruB is not inhibited by RNA containing 5-fluorouridine.	1.04627e-67
CP026341.1\|AUW37088.1\|306053_310772_-\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	2.18758e-47
CP026341.1\|AUW37089.1\|311012_311744_-\|triosephosphate-isomerase	gnl\|CDD\|238190	cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.	1.36712e-74
CP026341.1\|AUW37092.1\|313717_314467_-\|hypothetical-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	0.0061789
CP026341.1\|AUW37422.1\|304392_305118_+\|rRNA-methyltransferase	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	6.24615e-52
CP026341.1\|AUW37082.1\|294242_294683_-\|transcriptional-regulator-MraZ	gnl\|CDD\|234728	PRK00326, PRK00326, transcriptional regulator MraZ.	2.91534e-43
CP026341.1\|AUW37079.1\|291114_292260_-\|cell-division-protein-FtsZ	gnl\|CDD\|276961	cd02201, FtsZ_type1, Filamenting temperature sensitive mutant Z, type 1. FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.	2.91402e-139
CP026341.1\|AUW37086.1\|303520_304324_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	4.25959e-47
CP026341.1\|AUW37083.1\|295395_297219_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.63085e-124
CP026341.1\|AUW37076.1\|276176_276566_-\|hypothetical-protein	gnl\|CDD\|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	1.47947e-05
CP026341.1\|AUW37084.1\|297233_299018_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	4.51123e-108
CP026341.1\|AUW37078.1\|285945_290850_-\|hypothetical-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	1.01773e-41
CP026341.1\|AUW37081.1\|293339_294242_-\|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl\|CDD\|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	5.04276e-127
CP026341.1\|AUW37075.1\|270850_275911_-\|hypothetical-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	3.32417e-41
CP026341.1\|AUW37091.1\|312401_313505_-\|hypothetical-protein	gnl\|CDD\|234767	PRK00448, polC, DNA polymerase III PolC; Validated.	0.00793253
CP026341.1\|AUW37077.1\|276701_285152_-\|hypothetical-protein	gnl\|CDD\|372554	pfam13306, LRR_5, Leucine rich repeats (6 copies). This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis.	4.40732e-44

>CP026341.1|AUW37084.1|297233_299018_-|ABC-transporter-ATP-binding-protein
MLKLIKFLPWKIKILFIVGSFISLISVIFELITPTLISQFIRLLFIENKNSQVDLSFFNGLINFTFNNAINARNYMIYSIIVLTIISMSLTFGCTSLIVYAAERSSRYIRENFIRKLNTLSLKNISDLKPESLITRVSDDIAVFWEFLISATNVLTRAISMIIGGCILAVMNNVKMAIGLILLVPIILTIVSIMAKKASPSIKKAQLAVEEITKQVDENILGSRLIKIYDLYKNREEKFAKINKTWKNFNVNAGSIFVGIAPLFFGIFNLFVVVLYSLVVHDVISNVATYDTIVRFNIFIDYSFYVTFGVILGAVFISAFVKGKISATRVIEVLNTNEDKIYVSDGKKITKNFDLKVENLSFKYYSSNPNYTLHNISFSLPFGKTLGLVGPTGSGKSILANLLVNNYLYNEGSILIGDNEIKEVNTKNLHETIGIVYQDALLNTGTIKENMLFAKNDATDEEINQALRDACAYDFVYKFEENLDHVITQGATNLSGGQKQRLSIARTLLTKPKILILDNSTSALDNITAHQVLQNIKNKYSCSTIIISQKLPLIKNADEIIVLSDGNMLDKGNHEKLMKSCSYYNESYNNQLSQ
>CP026341.1|AUW37083.1|295395_297219_-|ABC-transporter-ATP-binding-protein
MKKRTKEKQKLSFITLFKLVFKYSGESKTKFWLAVLFSFFHAIFYAIGSFLIGYIFTICLTKDVLDHKAPFNLKLFIGMASCLVISFILYGIFRYVSGVFFVKITFSVCENIRKTAMKNLLYIPVSYFDNQKSGNIISILVNDINSLSETIFKLLNELIQCAINVILSVIFLSMVSLVLSAVVLPVLFLFSFIGILITKKAQKAFIQTRKHFGELNAFVEEMLTNSKIIKTFEQQEQVNNHGKQIARNIFNTAFTGDLNNQIINPWIVFTNNILVILIVTVTLVLKGNNIHVYGLFNTNAEHGFLISYLTLIYSFLSTLQSMLTILVYARIGIASAVRVNTLLSLPNTHIKNHSKGIVIENPVGNISFDHVYFRYNENLPKYQLTDASFNAKAGQTIALVGETGAGKTTIINLLNRFYDYEKGSIKIDGIELREISKDSLRDFTAVVLQDSFMFNESILNNLLVGNPKATKEDVIRAAKLASAHHIIEKLEHGYDTIIDDSTSILSKGEKQLLSIARAILGNKKILILDEATSNVDSNTEKIIQQALKENIMVGKTSIVIAHRLSTIKNADLILVVDDGRIIEQGTHKQLLELNKKYARLYYSQFDD
>CP026341.1|AUW37082.1|294242_294683_-|transcriptional-regulator-MraZ
MFGKYYRQIDDKNRVVVPPKLLQELGKEFYITIGIDKNLVLRTVSEFQKMKTKLEEGNTLNKNVRDFIRYIFGNTEVVSPDKNNRIMIPKHLLNKAAIDKEVVFLGTGDTCELFAKEVYDEQESYYENDDNVNDLAQKLFEAGVKF
>CP026341.1|AUW37081.1|293339_294242_-|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MEHIPVLLNEVIEQLSIKPDGIYVDLTLGRGGHSQEILKRLTTGKLICFDKDIQAINESREKLIKISQNFILIKSDFRNITCELKKLNIDKVDGILADLGVSSPQLDDPNRGFSYSINSDLDMRMDLDNTLTAKEIINNATEKEIIDILQSNADVKLSNLIAKAIVKNRPISDSFTLNQIIKDSLPAKIVRQKNPSKAVFQAFRIAVNDELNALSEMLSQLPNLLKKDGKIAIITFHSKEDVIVKKFYQNLNYFDPKLKKILIVETHKWHQKVIFPSSKEEEINKRSRSAKLRVITKLMD
>CP026341.1|AUW37080.1|292267_293335_-|hypothetical-protein
MKKIIIAAYKFLKNSIEVEVMEKTNTLSFCIYKKAINNIYLTESDIKNFIKQTKNEIQKLISASINEVIVMLSEDSKWNINSKLLTLNNDNFNISNLKNIRSNFNNIGQKILEFKLVKKTNIKQIYSLKTISNANSLRLQEIFSSNDLKIAKIFCLDSLKTNSVLFKNSKQKIAIFVDVLDDKAKFILNINKSNIVSQVLDLGLNKLKARMLQCNLLSTESNWFSEVVNCLTYKCNFAPIIKNILNEFINKLLTSVATFVNNYGIDLKVCKLYFNSELKLFDNILIQNEKINLFSDFEYEIKNEYLSCEMLAIDNILECQIKQNALNNEISRELFTIEVYSNSKKYYNLMLNDIN
>CP026341.1|AUW37079.1|291114_292260_-|cell-division-protein-FtsZ
MAKELNNYNPVAKIIVIGVGGGGNNSVETMINSHLDSFQIIAANTDKQVLAKFPQECVLHLGDERGIGAGANPEIGKTAAESSREEIKSRLQGADLVIITAGMGGGTGTGAAPVIAQIAKECNALVVAVVTTPFDFEGPKRMRIAKQGLQEIKKCVDSYIVISNNKLLQQYGNISFSDAFICANNVLKQTIRTIVDVIATPSIINLDFADLSTIIKNKGETVIGIGQANGQDRAVKAITSAITSPILESSVVGASDAIVNFSASQKVTLNEIQSALGAMREIVGNEINIIFGITTLESEESNKLGELFVSVIATGLRKDAPKDIDQIQDEVINVIKKDDLNYVNDETKEFFVSEGTFKTQSFFSMDNDEDSNDELADILKH
>CP026341.1|AUW37078.1|285945_290850_-|hypothetical-protein
MKNKKNSKIWLILSSISALTTILPLATISCDYGVKQNSKENKEDSKPDENKPGTTPGKKPEGEKPGTTPEVKPEPKPEPKPEPKPEPKPEPKPENPTKEEDSSNLNKTFKFELTKSNTWKIVKYIGNDSEVTIPREYQGKNITEIGAWAFYDTKIESITIPGSIKEIGESAFSGCRNLEEVILNKGLEKIGAGAFYDTKIESITIPSSIKEIGKSTFSGCENLKEVILNEGLEKIGAGAFSSTNIESITIPGSIKEIDKSTFSGCENLKKVTLNEGLEKIGESAFADTKIESITIPGSIKEIDKSTFSGCKNLKEVILNEGLEKIGAGAFSSTKIESITIPGSIKEIGESAFSGCRNLKKVTLNKGLEKIGESAFADTNIESITIPGSIKEIDKSTFSGCWNLKEVTLNEGLEKIGESAFADTNIESITIPGSVKEIDERAFHGCTNLKKVILNEGLEKIGESAFADTKIESITIPGSIKEIGGGALSSGNISSILINSNNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPGTVKEIDERVFSGCKNLKEVTLNEGLEKIGAYAFSDTKIESFTIPGSVKEIGKGALSSGNISSILINSNNKNFEIKDNFFIDKNNKKILAYLDKETTKVTIPGTVKEIDERVFSGCKNLKEVTLNEGLEKIGAYAFWNTKIESITIPSSVKEIGKGALSACPNLKEVILNEGLEKIGAETFYNTNIESITIPGSAKEIGEYAFYYCKNLKEVILNKGLEKIGTSAFKDTNIESITIPGSIKEIGEYAFSGCENLKKVTLNEGLEKIGESAFADTNIESITIPGSIKEIDKSTFSGCWNLKEVTLNEGLEKIGESAFADTNIESITIPGSIKEIGESAFADTKIESITIPGSIKEIDKSTFSGCQNLKEVILNEGLEKIGADAFSDTKIESITIPGSVKEIGKSTFSGCKNLKEVILNEGLEKIGAETFRDTKIESITIPGSVKEIDKNTFSGCPNLKKVILNEGLEKIGADAFSDTKIESITIPGSVKEIGKSTFSGCKNLKEVILNEGLEKIGAETFRDTKIESITIPGSIKEIDKNTFSGCPNLKKVILNEGLEKIGAEAFAITSIESITIPGSVKEIGKGAFYYCKNLKEVILNEGLEKIGAWAFSDTNIESITIPGSVREIGEGALSSGNISSILINSNNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPSSVKEIGEGALSACPNLKEVILNDGLEKIGAWAFSDTNIESITIPGSVREIGEGALSSGNISSILINLSNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPGTVKEIDERVFSGCENLKKVTLNEGLEKIGAWAFWNTKIESITIPGSIKEIGESAFSGCLNLKEVILNEGLEKIGESAFSDTKIESITIPGSVKEIGESAFSSCPNLKKVILNEGLEKIGAKAFLDTNIESITIPGSVKEIGEIAFYDCRNLKEVILNEGLEKIGAGAFSAWAFSDTNIESITIPGTVKEIGESAFSGCKNLKKVILNEGLEKISAKAFLNTNIESITIPSSVKEIGKDAFYYCENLKEVILNEGLEKIGAEAFKDTNIESITIPGSVKEIRKSAFSWCNNLKEVIYKGDASNINWENIGVDITKVKIISSNN
>CP026341.1|AUW37077.1|276701_285152_-|hypothetical-protein
MKNKKNIKIWLILSSISALTTILPLATISCDYGVKQNSKENKEDLKPDENKPESKPEAKPDDKKPGTTPEVKPEGETTIDNIINKHKEIKDDELNKTKSLLNELNKEIEKREEQNLLEKRNKLIKETEAKWDDITKKIDEYSKDAKISKFQEFIQITDYLKYKKVELKDLKTTKNNTIKLLVAKYFNILEVKILAENKAFIDNIINKHKEIKDDELNKTKSLLNELNKEIERREEQNLLEKRNNLIKETEAKWDDITKKIDEYSNDAIISKFPEFIQITNYLEYKNVELKNLKATKNNTIKLLVAKYFNILEAKILEFKENIININKYKEIKDDELNKTKSLLNELNKEIEKREEQNLLEKRNNLIKETEARWDDITKKIDEYSNDAIISKFPEFIQITNYLEYKNVELKNLKATKNNTIKLLVAKYFNILEAKILKFKENIININKYKEIKDDELNKTKSLLNELNKEIEKREEQNLLEKRNNLIKEIEAKWDDITKKIDEYSNDAIISKFPEFIQITNYLEYKNVELKNLKATKNNTIKLLVAKYFNILEAKILKFKENIININKYKEIKDDELNKTKSLLNELNKEIEKREEQNLLEKRNNLIKEIEAKWDDITKKIEEYSKDAIISKFPEFIQITNYLEYKNVELKNLKATKNNTIKLLVAKYFNILEAKILKFKENIININKYKEIKDDELNKTKSLLNELNKEIEKREEQNLLEKRNNLIKEIEAKWDDITKKIEEYSKDAIISKFPEFIQITNYLEYKNVELKNLKATKNNTIKLLVAKYFNILEAKILENKTFIENIINKNKEIKEDSFSKTKSLLNELNKEIEKRTNQALNEAKKQLNSALKHASKINTGSFDFNQKFSFNKEYVRGLEAIKGNDLNAIKEITFKLNSFINLAISEKPGTTPEVKPEPKPENPTKEDDSSNLRKNFKFELTKSNTWKITKFIGNDSKVTIPKEYQGKNITEIGAEAFAGKNIESITIPGSVKEIGERAFYDCLNLKEAILNEGLEKIGAGAFNRTRIESITIPGSVKGIGNWAFDFSMTSHILINSNNKNFEIKDNFFIDKNNKKILSYLDWMATKVTIPSSIKEIGEGAFSGRRDLHEVILNEGLEKIGAGAFHFSDISHISINSNNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPGSVKEIDERAFSWCPNLKDVVLNEGLEKIGDSAFDGTKIESITIPGSVKEIGKGAFSSCNNLRKVILNEGLEKIGAEAFNHTKIESITIPSSVKEIGYSAFSCCWNLKEVILNEGLEKIGAWAFAAMMGIHNTKIESITIPGSVKEIDKGAFYGYKNLKKVILNEGLEKIGAEAFLSTKIESITIPGSVKEIGVRAFDFSIISNISINSNNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPGSIKEIGEDAFYGCKNLKEVILNEGLEKIDAKAFSGTSIESITIPGSVKEIGEGAFYDCKNLKEVILNEGLEKIGAGAFEYTKIESITIPSSVKEIGKGALSACPNLKEVILNEGLEKIGAWAFSNTNIESITIPGSVKEIGESAFYDCLNLKEAILNEGLEKIGDSAFDGTKIESITIPSSVKEIGEWAFSNCKNLKEVILNDGLEKIGAETFHNTKIESITIPSSVKEIDKSTFSGCKNLKEVILNEGLEKIGVEAFKDTNIESITIPSSVKEIGWHAFFGCKNLKEVILNEGLEKIDAKAFSGTTIESITIPSSVKEIDKSTFSGCKNLKEVILNEGLEKIGAEAFKDTNIESITIPSSVKEIDKSTFSGCKNLKEVILNEGLEKIGAEAFKDTNIESITIPSSIKEIGEGAFYGCRNLKEVILNEGLEKIGAEAFWSTSIESITIPDSVKEIGNRAFKFSKISHISINSNNKNLEIKDNFLIDKNNEKILAYLDKKTTKVTIPSSIKEIGEGAFYGCRNLKEVFLNEGLEKIGAYAFDYTNIESITIPGSVKEIGAWAFNFSIISHISINSNNKNFEIKDNFFIDKNNKKILAYLDKKTTKVTIPSSIKEIGEGAFSGCRSLEEVFLNEGLEKIGAYAFDYTNIKSITIPGSVKEIGQRAFSNCQNLKEVILNEGLEKIGNSAFSSRSGTSIESITIPGSVKEIGQRAFSGCKNLKEVILNEGLEKIGAEAFKDTNIESITIPGSVKEIGQRAFSGCKNLKEVILNKGLEKIGAEAFKDTNIESITIPGSVKEIGQRAFSGCKNLKEVILNKGLEKIGAEAFWSTSIESITIPGTVKEIDKSTFSGCPNLKKVILNEGLEKIGAEAFKDTNIESITIPSSIKEIGEFAFSNCTKLEEVILNESLEKIGEFAFYNTKIESITIPGSVKEIGESAFSGCKNLKEVILNEGLEKIGAWAFSDTSIESITIPGSVKEIGESAFSGCRNLKEVILNEGLEKIGAWAFSDTSIESIIIPDSIKEIGEGAFYGCRNLEEVFLNEGLEKIGAKAFSGTSIESITIPSSVKEIGNRAFNFSKISHISINSNNKNFEIKDNFFIDKNNKKILAYLDKKTTKVTIPSSVKEIGESAFYGCKNLKEVILNEGLEKIGAWAFSDTNIESITIPGSVKEIGAWAFSFSIISHILINSNNKNFEIKDNFFIDKNNKKILAYLDKKTTKVTIPSSVKEIGESAFYGCRNLKEVILNEGLEKIDAKAFSGTSIESITIPSSVKEIDKGAFYGCRNLKEVILNEGLEKIGAGAFSNTNIESITIPGSVKEIDKFTFSGCRNLKEVISNEGLEKIGAWAFDYTNIESITIPGSVKEIGEWAFSGCENLKEVIYKGDASKINWEDTGIDKSKTKIISSNN
>CP026341.1|AUW37076.1|276176_276566_-|hypothetical-protein
MYKFFANKLEDGIFYFSDEIQSALGAMREIVGNEINIIFGITTLESEESNKLGELFVSVIATGLRKDAPKDIDQIQDEVINVIKKDDLNYVNDETKEFFVSEGTFKTQSFFSMDNDEDSNDELADILKH
>CP026341.1|AUW37075.1|270850_275911_-|hypothetical-protein
MKNKKNIKIWLILSSISALTTILPLATISCDYGVKQNSKENKEDLKPDENKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPEPKPENPTKEEDSSNLNKTFKFELTKSNTWKIVKYIGNDSEVTIPREYQGKNITEIGAWAFYDTKIESITIPGSIKEIGESAFCDCENLEEVILNKGLEKIGAGAFSSTNIESITIPGSIKEIDKSTFSGCENLKKVTLNEGLEKIGESAFADKKIESITIPSSVKEIGEGAFSGCENLKEVTLNEGLEKIGAEAFYKTNIESITIPGSIKEIDKSTFSGCENLKKVILNEGLEKIGESAFADKKIESITIPGSIKEIGESAFCDCENLEEVILNKGLEKIGARAFSNTNIKSITIPDTVKEIGNWSFDFSMISDISINSNNKNFEIKDNFFIDKNNKKILSYLDKKATKVTIPSSVKEIGESAFFDCKILKEVILNEGLEKIGARAFSNTNIKSITIPDTVKEIGNWAFDFSMISDISINSNNKNFEIEENFFIDKNNKKILSYLDWMATKVTIPSSIKEIGEGAFSGCENLKEVILNEGLEKIGAGAFHFSDISHISINSNNKNFEIEDNFFIDKNNKKILSYLDKKATKVTIPSSVKEIGEGAFSGCENLKEVTLNEGLEKIGAEAFYKTNIESITIPSSVKEIGERAFHGCTNLNEAILNEGLEKIGVEAFRYTKIGIITIPGSVKEIGNWAFDFWMTTLILINSNNKNFEIKDNFFIDKNNKKILSYLDWMATKVTIPSSIKEIGEGAFLGHGDLHEVILNEGLEKIGAWAFDFSIISHISINSNNKNFEIKDNFFIDKNNKKILAYLDKKATKVTIPGSVKEIDERAFSWCPNLKEVILNKGLEKIGAEAFYKTKIESITIPGSVKEIGEWAFYGCENLKEVILNKGLEKIGYAAFAGLININNPKIESITIPGSVKEIGAGAFSDCANLKKVILNEGLEKIGACAFSYTNIESITIPDTVKEIGESAFSGCTNLKEVILNEGLEKIGAKAFLDTNIESITIPGSVKEIGVRAFDFSRISHISINSNNKNFEIKDNFFIDKNNKKILAYLDEKATKVTIPGSVKEIGEWAFYGCKNLKEVILNKGLEKIGAWAFSNTKIESITIPGSVKEIGEDAFNGCTNLKEVILNEGLEGIGWYAFSNTNIESITIPGSIKEIDKYAFSWCESLKEVILNEGLEKIGAEAFAGKNIESITIPSSVKEIGERAFYDCLNLKEAILNEGLEKIGACAFWNTKIESITIPGSVKEIGAGAFSWCESLKEAILNEGLEKIGESAFSDTKIESITIPGTVKEIGESAFYGCENLKKVILNEGLEKIGAEAFYKTKIESITIPGSVKEIGERAFYDCLNLKEAILNEGLEGIGWYAFSNTNIESITIPSSVKEIGLYAFSDCLNLKEAILNEGLEGIGWYAFSNTNIESITIPGSVKEIGVRAFDFSRISHISINSNNKNFEIKDNFFIDKNNKKILAYLDEKATKVTIPGSVKEIGGRAFSGCKNLEEVILNEGLEKIGAEAFKDTNIESITIPGSVKEIGQRAFSGCKNLKEVILNKGLEKIGAEAFNHTKIESITIPGTVKEIGERAFSWCENLKEVILNEGLEKIGAEAFSNTNIESITIPGSVKEIGERAFYNCKNLKEVIYKGDASKINWEYIGIDKTKIKIISSNN
>CP026341.1|AUW37085.1|302648_303512_+|tRNA-pseudouridine(55)-synthase-TruB
MFYKLYKKRGQSSFFAIKKFAKNNNINKVGHCGTLDPEAEGLLIVATDEDTKALSLIENQNKEYYVEAKFHYSSDSFDLGTYVTKIQNFQIITKFQIIQALEILKKQTKQVPPIYSAKKINGTRAYKLARDNKEFSLKANDIKINNLELIEFNEVNQSIIIKVNVSKGTYIRSLIHDLANICNTDAVVVVLKRIKIGNICLNGQEEFEKITNLNELFNVKLFKLTKNDIQILANQNSNSCYFESLKNFCGNIIFIYLNNIVGWGKSEFGNVIIFKRFFKRLTMLISS
>CP026341.1|AUW37086.1|303520_304324_+|Cof-type-HAD-IIB-family-hydrolase
MTKYKIIVFDIDGTLLPFGVTQLTPRMHEMFEKLKEQGYVNVLCSGRDIFTVGAQIDNPYVDYFIGANGTFILDLRTKEYIFEKTINYKDFVEFRKYASEHKLSFSFVGNKWGYYNELFNIDHWFYRPYKDKFIPEKEFESQHDKNYLITISTPTPSIVAADLEKFFKEKNLDLWILAQWNGGIFISAKGITKAVGLKILGDLLNISLDEMVAFGDSENDIEMLEKVGLGIAMGNGEDVTKDAANEICLPVTEDGPYWKLRDKGFFD
>CP026341.1|AUW37422.1|304392_305118_+|rRNA-methyltransferase
MAITSTQDPKILKYKKLLTPKGRQEQQLFIVEGYHLVKEAIEANIVIDILEFNDILTYKNSTQVTRAIIKTLSTTQTPQNIIAICKIQNLNIKANKIIALNKLQDPGNIGTIFRLAKSFGFDSVIVENIDIYNEKIIRSSQGAMFSLNIIKTNDLSKELSAFKKDDFLVYSTTLNKNSIKLNDIDFRNKKIVIVLGNEGNGIDKKIIDLSDFNVYIPIEFESLNVACCGAIIMNKIYNGDK
>CP026341.1|AUW37087.1|305117_305990_+|riboflavin-biosynthesis-protein
MQVFDWDFKAKLNINEPLTICLGSFETLHLGHNELFKIAKDLKQSYPDQKLAIMMFKNPVKNSQVLTKKAMQPKTRLYTLALLGFDYVFLVDVNQTILNCSYSDFIQGLKINNVKNVVCGQDFRFGFNREGNIDKLKKYFNVYVANELKVNKQKISSTIINEFIEEGNINGLNKLLIDKYSIIVNSQKFNFKYPEHLNQLKAGIYIANVVWNNIEYHGLIFINKNQFDSNNNLQENNIIYLFDIDYFISKYQELYIEFLQCIRHINNNSENQISTNDIEIAKNYFIANKK
>CP026341.1|AUW37088.1|306053_310772_-|hypothetical-protein
MENKELITKTLAYESLKNKLLDTTLRNILINYKKNKSSTITIEKEDIKSILDKIENRSEFKFIGSQDSDDDIEVESNEFLSSASQKELLAILSLLQRKQKTLLEEQGINILYLAFGGLHWKDKTEKNVYSPLLFLPVSIESENGLQNKKIIIQSNDFVVNNSLIKKLNDDFGLDIKFEAFDNAEGSLYDRYSQYIEFINQKINSFNDSIEQNWKIVDEASLSAFRFSSMDIYLDVDKNKDNIINSEIMNAMTGINNVFSSEYLYSEEEVDNIVSPKGYYHCLMTNSSQEAAIQSAIKGNSFIIQGPPGTGKSQTIANIISELIARDKKVLFVAEKKAALDVVYKSIQNLGFANFILLIHSNNSNKKDFSNDLYETLQDGQKFKKVSDEVIANNDYLYSDSLEKMNDFVRKILSNRKPLGRSLYLMIGDYQKLLANTKGINFDIRDFEKMDNEQFVKIQSSLNKFNLNYKNINFNAKESLWYGLSILDVKLQDLENIKEISSHLINEIQSLINFLNLEIPNNYQPYIKNSNYSLFNSFFKIFSNIQDIDINPKYLEIFSYNKTNATQIINEILLQKEKIQPDIDWILSRYNQNIFNSEIYKNLDFVKSRNNIFKRIFSKRYRAIKKELKTNFISSNLNYKNLLKDLVALNNIQLAKNAITLLTNKIPFSFKENYNEMDLNGLKQQLNTFSKYEIINNQLSELKFDQDLKISFFNFLLSHIQLTNNYINSYKNLMTFEDKFNDYFNNKYVDYSNSYYKVNDFIKKLNFLIDSDEYPEAYCSYIKSRQELKDNPFTNDFVDAIELLDIDCLKQNSIENIFNKRFYQLLIDYYLSIDLADWNDREYEKIINVFKDSCLKLNEIAKFKIIENLSNNLPTLNSTIYNDELEILKKEYSKVRNKKPIRKLFKEIPNLIQNIKPCFMMSPSSLSTYLADSSITFDSVIFDEASQLTTENALISMIKAKQIIIAGDINQLPPTNFFKTMSSEQEPNEDEEIVNEENDYDSLLERMQSSFRQVTLKWHYRSKFEELILPSNKFVYDNKLITFPTYQKTAKKDGELLPFEGVSFIKVNGIYEDQTNEIEANRIIELIKQLKDYYGNTKTFGVVTFNLKQANLIDHKLFLFMNENPEYMDLDTENKIFVKNIESVQGDERDIIILGITNSWDKNGRLSRFFGPLNNVGGEKRLNVAISRAKEATIVVSSISYSDLKVDDLKNEGLRFLKQYLQFAEFGYDSKSDDILQDDTKTFDSEFEIQVYDELKKLGYKVNTQVGCSKFKIDLAIVDDKNPSKYILGIECDGATYHSSKSARDRDAIRQMLLESRGWIIHRIWSLNWFKNKRRELEKIVDKVNQIKQKKFVVKQNEYKTIENSQFEIIEKRDNFNFEEWLPFNYSYRKTLNFIEKSNKRNPLLNGYEIVKQMFNYGHTYREKEINKMIKDIFVNLALNKDEYTYKFLCENSINYFVNNKMLEKLINPDGEIFYHDVSKPNTFRMPKDCDNRKISEISSLEMFDLIKQVLNNSKSSILKNNLTNTILKTLLIARTENNISKLNDLYGYLNNLGLIKVISNGDIEYIDLNNKD
>CP026341.1|AUW37089.1|311012_311744_-|triosephosphate-isomerase
MKYLIGNLKMNLSYLESQNYLNELQSLNKIKNFKNVMVGAALSFDAMSLSLQYNKRNFLFGVQNIFYKEKGAYTGEVSFRSAVELNIDFVLIGHSERRKLFNETDQLINLKIKQIEKTSIIPILCIGEDQENCSDKVFEDIIKNQILKALEDVDVYNRLIISYEPTYCIGNGKIPQNNHIEKAISVIKKITNNQVPVLYGGSVSQKNIEKLLEIKDLDGFLVGGAALDAQGFLEMGSIIEKSN
>CP026341.1|AUW37090.1|311758_312283_-|hypothetical-protein
MTLKQKNFRNQKKSISYWKNAWNKATISYFFVSLVIYIALIFIVRYSKKSVDGQYVHSWQNSLTVSMIFAITINFIIVVYRKGMGKWIVNPIANLIRNRIIMRRAKDKFYSGMTIHQKDIIIAKERQEFERERLKAEKQRNYQSINNLSFLLLILYGLIILIILIPFLALRIVW
>CP026341.1|AUW37091.1|312401_313505_-|hypothetical-protein
MRKKLLYILPLSSTILITPLVAASCSKKPKQPKQNIETTQTKDENAQKTEELLKKFNDAKTDLFSYLKDNFLVEGAEQFNTLKEVQDAKKLLESFNKESPESSIESLNEKIQKINVAKQKILKIQPLLKDLTKIDNLVNELNNLENKIKLDADNSKIDKLTRNELKSIADNLSLTLKAINLEALLNNINSKDIASYLNKLNEIKQITSLRIQKTKFINLALQQKFQDQVIENIINKIAKNNLKEKYISLINQYQYFKGQIIEKINKCHANDNLTESLNEQIDSISQKLALNESIWEFVETLTDAEINSNKIFQKPDGQDFIEKFINPYINKLVNNEKDSSYTNFKQVEHDKREFNEIYHKKINSLIK
>CP026341.1|AUW37092.1|313717_314467_-|hypothetical-protein
MRNKIRLLILSAVATSVVAMPLVAAGCKTTNDSQNSTTTGEDSTGQSQDSTTTGEDSTGQSQDSTTTGEDSTGQSQDSTTTGEDSTGQSQSGDIIDPNKRAKGQLGQSQLSYIRDQFGFTLTNEGKEILNDPARGTKELQRILEGIINKYKSIDEQIENSIRNKQTSGINSQVYKAYKNVMNDADFVKYFKVTLPKILIPFGHPISIQLKSKGRLRDLPVISYSVICPDKSNNGIFSSDGDSEVPLEID
>CP026341.1|AUW37093.1|314468_315017_-|hypothetical-protein
MNKKITLFCLPIVLIIPTIAAVSCQKSSNLKAKNDLLKTKIIEGINCPCHTKYNVLSNNNQNMSSTMLAAIYDSFNFESKIPLNQENKKFLFKIIDKLNDKYKKDDQKSNIFSDELFLKYFKISLPDSKYLLNHTLKLELGYGDTNLKSDTIFIKYSIICKLRSNQFLQVIEDERYVYIQGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	287787-287831	0	1.0
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	288057-288101	0	1.0
CP026341_2	2.1\|286566\|48\|CP026341\|CRT	286566-286613	48	CP026341.1	287583-287630	1	0.979
CP026341_2	2.1\|286566\|48\|CP026341\|CRT	286566-286613	48	CP026341.1	287853-287900	1	0.979
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	288192-288236	1	0.978
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	289104-289148	1	0.978
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	289410-289454	1	0.978
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	289545-289589	1	0.978
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	289950-289994	1	0.978
CP026341_2	2.4\|286770\|45\|CP026341\|CRT	286770-286814	45	CP026341.1	272101-272145	1	0.978
CP026341_2	2.4\|286770\|45\|CP026341\|CRT	286770-286814	45	CP026341.1	287652-287696	1	0.978
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	274903-274947	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	275173-275217	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	286350-286394	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	287076-287120	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	287382-287426	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	288258-288302	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	288393-288437	2	0.956
CP026341_2	2.2\|286635\|45\|CP026341\|CRT	286635-286679	45	CP026341.1	289680-289724	2	0.956
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	266232-266279	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	272878-272925	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	274222-274269	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	279755-279802	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	279890-279937	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	280160-280207	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	281294-281341	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	287718-287765	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	287988-288035	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	288123-288170	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	288324-288371	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	289611-289658	2	0.958
CP026341_2	2.3\|286701\|48\|CP026341\|CRT	286701-286748	48	CP026341.1	289881-289928	2	0.958
CP026341_2	2.4\|286770\|45\|CP026341\|CRT	286770-286814	45	CP026341.1	287922-287966	2	0.956
CP026341_2	2.4\|286770\|45\|CP026341\|CRT	286770-286814	45	CP026341.1	288798-288842	2	0.956
CP026341_3	3.1\|301668\|33\|CP026341\|CRISPRCasFinder	301668-301700	33	CP026341.1	341828-341860	2	0.939

1. spacer 2.2|286635|45|CP026341|CRT matches to position: 287787-287831, mismatch: 0, identity: 1.0

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgaaccaggaatagtaatagattcaatttttgtatcag	Protospacer
*********************************************

2. spacer 2.2|286635|45|CP026341|CRT matches to position: 288057-288101, mismatch: 0, identity: 1.0

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgaaccaggaatagtaatagattcaatttttgtatcag	Protospacer
*********************************************

3. spacer 2.1|286566|48|CP026341|CRT matches to position: 287583-287630, mismatch: 1, identity: 0.979

tttcaagaccttcatttaaaattacttttttaaggtttgggcaactag	CRISPR spacer
tttcaagaccttcatttaaaattacttttttaaggtttgggcaaccag	Protospacer
*********************************************.**

4. spacer 2.1|286566|48|CP026341|CRT matches to position: 287853-287900, mismatch: 1, identity: 0.979

tttcaagaccttcatttaaaattacttttttaaggtttgggcaactag	CRISPR spacer
tttcaagaccttcatttaaaattacttttttaaggtttgggcaaccag	Protospacer
*********************************************.**

5. spacer 2.2|286635|45|CP026341|CRT matches to position: 288192-288236, mismatch: 1, identity: 0.978

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatttttgtatcag	Protospacer
******.**************************************

6. spacer 2.2|286635|45|CP026341|CRT matches to position: 289104-289148, mismatch: 1, identity: 0.978

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgaaccaggaatagtaaaagattcaatttttgtatcag	Protospacer
************************ ********************

7. spacer 2.2|286635|45|CP026341|CRT matches to position: 289410-289454, mismatch: 1, identity: 0.978

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatttttgtatcag	Protospacer
******.**************************************

8. spacer 2.2|286635|45|CP026341|CRT matches to position: 289545-289589, mismatch: 1, identity: 0.978

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
********************************** **********

9. spacer 2.2|286635|45|CP026341|CRT matches to position: 289950-289994, mismatch: 1, identity: 0.978

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatttttgtatcag	Protospacer
******.**************************************

10. spacer 2.4|286770|45|CP026341|CRT matches to position: 272101-272145, mismatch: 1, identity: 0.978

cttttattgaaccaggaatagtaatagattcaatttttgtatttc	CRISPR spacer
cttttactgaaccaggaatagtaatagattcaatttttgtatttc	Protospacer
******.**************************************

11. spacer 2.4|286770|45|CP026341|CRT matches to position: 287652-287696, mismatch: 1, identity: 0.978

cttttattgaaccaggaatagtaatagattcaatttttgtatttc	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatttttgtatctc	Protospacer
******************************************.**

12. spacer 2.2|286635|45|CP026341|CRT matches to position: 274903-274947, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatttttttatcag	Protospacer
******.******************************* ******

13. spacer 2.2|286635|45|CP026341|CRT matches to position: 275173-275217, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgaactaggaatagtaatagattcaatttttttatcag	Protospacer
************.************************* ******

14. spacer 2.2|286635|45|CP026341|CRT matches to position: 286350-286394, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttactgtaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
********* ************************ **********

15. spacer 2.2|286635|45|CP026341|CRT matches to position: 287076-287120, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
ctcttactgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
**.******************************* **********

16. spacer 2.2|286635|45|CP026341|CRT matches to position: 287382-287426, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
ctcttactgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
**.******************************* **********

17. spacer 2.2|286635|45|CP026341|CRT matches to position: 288258-288302, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
******.*************************** **********

18. spacer 2.2|286635|45|CP026341|CRT matches to position: 288393-288437, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
******.*************************** **********

19. spacer 2.2|286635|45|CP026341|CRT matches to position: 289680-289724, mismatch: 2, identity: 0.956

cttttactgaaccaggaatagtaatagattcaatttttgtatcag	CRISPR spacer
cttttattgaaccaggaatagtaatagattcaatgtttgtatcag	Protospacer
******.*************************** **********

20. spacer 2.3|286701|48|CP026341|CRT matches to position: 266232-266279, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

21. spacer 2.3|286701|48|CP026341|CRT matches to position: 272878-272925, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttgtgcaaccag	Protospacer
**************************************. ********

22. spacer 2.3|286701|48|CP026341|CRT matches to position: 274222-274269, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggttttcgcaaccag	Protospacer
**************************************  ********

23. spacer 2.3|286701|48|CP026341|CRT matches to position: 279755-279802, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

24. spacer 2.3|286701|48|CP026341|CRT matches to position: 279890-279937, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

25. spacer 2.3|286701|48|CP026341|CRT matches to position: 280160-280207, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

26. spacer 2.3|286701|48|CP026341|CRT matches to position: 281294-281341, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttcagcaacaag	Protospacer
************************************** ****** **

27. spacer 2.3|286701|48|CP026341|CRT matches to position: 287718-287765, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

28. spacer 2.3|286701|48|CP026341|CRT matches to position: 287988-288035, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

29. spacer 2.3|286701|48|CP026341|CRT matches to position: 288123-288170, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggttttggcaaccag	Protospacer
************************************** .********

30. spacer 2.3|286701|48|CP026341|CRT matches to position: 288324-288371, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaagttacttctttaaggtttcagcaaccag	Protospacer
********************.***************** *********

31. spacer 2.3|286701|48|CP026341|CRT matches to position: 289611-289658, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaagttacttctttaaggtttcagcaaccag	Protospacer
********************.***************** *********

32. spacer 2.3|286701|48|CP026341|CRT matches to position: 289881-289928, mismatch: 2, identity: 0.958

tttcaagaccttcatttaaaattacttctttaaggtttaagcaaccag	CRISPR spacer
tttcaagaccttcatttaaaattacttctttaaggtttttgcaaccag	Protospacer
**************************************  ********

33. spacer 2.4|286770|45|CP026341|CRT matches to position: 287922-287966, mismatch: 2, identity: 0.956

cttttattgaaccaggaatagtaatagattcaatttttgtatttc	CRISPR spacer
cttttactgaaccaggaatagtaatagattcaatttttgtatctc	Protospacer
******.***********************************.**

34. spacer 2.4|286770|45|CP026341|CRT matches to position: 288798-288842, mismatch: 2, identity: 0.956

cttttattgaaccaggaatagtaatagattcaatttttgtatttc	CRISPR spacer
cttttactgaactaggaatagtaatagattcaatttttgtatttc	Protospacer
******.*****.********************************

35. spacer 3.1|301668|33|CP026341|CRISPRCasFinder matches to position: 341828-341860, mismatch: 2, identity: 0.939

gttgttcctgggttttcgccttctggtttttta	CRISPR spacer
gttgttcctggtttttcaccttctggtttttta	Protospacer
*********** *****.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026341_1	1.1\|104004\|44\|CP026341\|CRISPRCasFinder	104004-104047	44	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	664655-664698	0	1.0
CP026341_3	3.1\|301668\|33\|CP026341\|CRISPRCasFinder	301668-301700	33	FN667788	Campylobacter phage CP220, complete genome	142077-142109	8	0.758
CP026341_1	1.1\|104004\|44\|CP026341\|CRISPRCasFinder	104004-104047	44	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1581498-1581541	12	0.727

1. spacer 1.1|104004|44|CP026341|CRISPRCasFinder matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 0, identity: 1.0

cttgcaccattgcggatgtagttcaatggtagaacatcaggttg	CRISPR spacer
cttgcaccattgcggatgtagttcaatggtagaacatcaggttg	Protospacer
********************************************

2. spacer 3.1|301668|33|CP026341|CRISPRCasFinder matches to FN667788 (Campylobacter phage CP220, complete genome) position: , mismatch: 8, identity: 0.758

gttgttcctgggttttcgccttctggtttttta	CRISPR spacer
ggttcacctgggtattcgtcttctggttttaca	Protospacer
* * . ******* ****.*********** .*

3. spacer 1.1|104004|44|CP026341|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 12, identity: 0.727

cttgcaccattgcggatgtagttcaatggtagaacatcaggttg	CRISPR spacer
atctttcttttgcgggtgtagttcaatggtagaacttcagcctt	Protospacer
 *. . *. ******.******************* **** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

599741 : 607771

Mycoplasma_phage(83.33%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUW37310.1\|599741_601406_+	hypothetical protein	Q6GZ00	Mycoplasma_phage	5.6e-38	28.9
AUW37311.1\|601434_602844_+	spermidine/putrescine ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.1e-55	55.3
AUW37312.1\|602812_603712_+	ABC transporter permease	Q6GZ02	Mycoplasma_phage	1.6e-63	49.8
AUW37313.1\|603704_604544_+	spermidine/putrescine ABC transporter permease	Q6GZ01	Mycoplasma_phage	1.1e-66	49.6
AUW37314.1\|604565_606326_+	hypothetical protein	Q6GZ00	Mycoplasma_phage	2.2e-45	31.5
AUW37315.1\|606424_607771_+\|tRNA	asparagine--tRNA ligase	M1PB22	Moumouvirus	1.5e-73	36.2

DBSCAN-SWA_2

620141 : 637235

Streptococcus_phage(84.62%)

integrase

attL 617740:617756|attR 643825:643841

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
617740:617756	attL	NA	NA	NA	NA
AUW37324.1\|620141_620648_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
AUW37325.1\|620631_623079_+	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
AUW37326.1\|623081_625274_+	hypothetical protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
AUW37327.1\|625255_626272_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.3e-188	99.1
AUW37328.1\|626253_627189_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	7.7e-170	99.0
AUW37426.1\|627565_629485_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	98.6
AUW37329.1\|629832_630186_-	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	4.6e-51	87.2
AUW37330.1\|630696_631161_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	6.5e-61	85.0
AUW37331.1\|631118_631349_+	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.6e-31	88.2
AUW37332.1\|631810_632014_+	excisionase	A0A1S5SF07	Streptococcus_phage	9.8e-30	95.5
AUW37333.1\|632095_633313_+\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	3.5e-223	94.3
AUW37334.1\|633762_635508_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.9e-36	28.5
AUW37335.1\|635501_637235_+	multidrug ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.6e-35	27.2
643825:643841	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026341

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection