CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP026377	Pantoea gaviniae strain DSM 22758 chromosome, complete genome	8 crisprs	cas3,DinG,DEDDh,csa3	1	1	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP026377_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_2

1383075-1383147

Orphan

Consensus_repeat	Method
AATGAGAACGTCAGGGCGGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_2

>merge|CP026377|2|1383075-1383147|CRISPRCasFinder
AATGAGAACGTCAGGGCGGCCGCAGCGGGCGTAAAGGCTTAAGGTGACGAAATGAGAACGTCAGGGCGGCTGC

>CP026377|2|2|1383075-1383147|CRISPRCasFinder
AATGAGAACGTCAGGGCGGCCGC	AGCGGGCGTAAAGGCTTAAGGTGACGA
AATGAGAACGTCAGGGCGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX92741.1\|1380162_1381305_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341462
CP026377.1\|AUX92738.1\|1374693_1375833_+\|hydrogenase-formation-protein-HypD	unknown	unknown	gnl\|CDD\|237892
CP026377.1\|AUX92736.1\|1373684_1374428_+\|hydrogenase-accessory-protein-HypB	unknown	unknown	gnl\|CDD\|182479
CP026377.1\|AUX92750.1\|1388518_1389178_-\|octanoyltransferase	unknown	unknown	gnl\|CDD\|237681
CP026377.1\|AUX92744.1\|1383907_1384102_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX92742.1\|1381596_1382913_+\|gluconate-transporter	unknown	unknown	gnl\|CDD\|237880
CP026377.1\|AUX95396.1\|1372529_1372994_-\|formate-hydrogenlyase	unknown	unknown	gnl\|CDD\|314081
CP026377.1\|AUX92743.1\|1383253_1383499_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX92735.1\|1373315_1373660_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	unknown	unknown	gnl\|CDD\|179630
CP026377.1\|AUX92739.1\|1376984_1379066_+\|formate-hydrogenlyase-transcriptional-activator-FlhA	unknown	unknown	gnl\|CDD\|237965
CP026377.1\|AUX92752.1\|1389623_1390835_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	unknown	unknown	gnl\|CDD\|182736
CP026377.1\|AUX92748.1\|1386847_1387048_+\|twin-arginine-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179612
CP026377.1\|AUX92737.1\|1374418_1374694_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	unknown	unknown	gnl\|CDD\|182438
CP026377.1\|AUX92747.1\|1385905_1386703_+\|hydrolase	unknown	unknown	gnl\|CDD\|143605
CP026377.1\|AUX92740.1\|1379230_1380052_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
CP026377.1\|AUX95397.1\|1375844_1376867_+\|hydrogenase-expression/formation-protein-HypE	unknown	unknown	gnl\|CDD\|100033
CP026377.1\|AUX92751.1\|1389259_1389523_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179912
CP026377.1\|AUX92746.1\|1385423_1385852_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP026377.1\|AUX92749.1\|1387380_1388346_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
CP026377.1\|AUX92745.1\|1384870_1385080_+\|cold-shock-protein-CspE	unknown	unknown	gnl\|CDD\|169931

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX92741.1\|1380162_1381305_-\|alcohol-dehydrogenase	gnl\|CDD\|341462	cd08183, Fe-ADH-like, Iron-containing alcohol dehydrogenases-like. This family contains iron-containing alcohol dehydrogenase (Fe-ADH) which catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. It is distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized.	1.56166e-100
CP026377.1\|AUX92738.1\|1374693_1375833_+\|hydrogenase-formation-protein-HypD	gnl\|CDD\|237892	PRK15062, PRK15062, hydrogenase isoenzymes formation protein HypD; Provisional.	0
CP026377.1\|AUX92736.1\|1373684_1374428_+\|hydrogenase-accessory-protein-HypB	gnl\|CDD\|182479	PRK10463, PRK10463, hydrogenase nickel incorporation protein HypB; Provisional.	9.55449e-158
CP026377.1\|AUX92750.1\|1388518_1389178_-\|octanoyltransferase	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	2.27893e-149
CP026377.1\|AUX92746.1\|1385423_1385852_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.31051e-16
CP026377.1\|AUX92742.1\|1381596_1382913_+\|gluconate-transporter	gnl\|CDD\|237880	PRK14984, PRK14984, gluconate transporter.	0
CP026377.1\|AUX95396.1\|1372529_1372994_-\|formate-hydrogenlyase	gnl\|CDD\|314081	pfam11046, HycA_repressor, Transcriptional repressor of hyc and hyp operons. This family is conserved in Proteobacteria. It is likely to be the transcriptional repressor molecule for the hyc and hyp operons, which express, amongst others, the protein HycA. This protein may be harnessed for the reduction of technetium oxide, an unwelcome product of radio-nucleotide bioaccumulation. HycA produces formate hydrogenlyase, one of the key proteins necessary for metal compound reduction.	5.05819e-57
CP026377.1\|AUX92748.1\|1386847_1387048_+\|twin-arginine-translocase-subunit-TatA	gnl\|CDD\|179612	PRK03625, tatE, twin-arginine translocase subunit TatE.	1.46744e-26
CP026377.1\|AUX92735.1\|1373315_1373660_+\|hydrogenase-maturation-nickel-metallochaperone-HypA	gnl\|CDD\|179630	PRK03681, hypA, hydrogenase/urease nickel incorporation protein HypA.	3.45473e-57
CP026377.1\|AUX92739.1\|1376984_1379066_+\|formate-hydrogenlyase-transcriptional-activator-FlhA	gnl\|CDD\|237965	PRK15429, PRK15429, formate hydrogenlyase transcriptional activator FlhA.	0
CP026377.1\|AUX92752.1\|1389623_1390835_-\|serine-type-D-Ala-D-Ala-carboxypeptidase	gnl\|CDD\|182736	PRK10793, PRK10793, D-alanyl-D-alanine carboxypeptidase fraction A; Provisional.	0
CP026377.1\|AUX92737.1\|1374418_1374694_+\|HypC/HybG/HupF-family-hydrogenase-formation-chaperone	gnl\|CDD\|182438	PRK10413, PRK10413, hydrogenase maturation factor HybG.	2.20811e-28
CP026377.1\|AUX92747.1\|1385905_1386703_+\|hydrolase	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.09861e-116
CP026377.1\|AUX92740.1\|1379230_1380052_+\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	3.32432e-64
CP026377.1\|AUX95397.1\|1375844_1376867_+\|hydrogenase-expression/formation-protein-HypE	gnl\|CDD\|100033	cd02197, HypE, HypE (Hydrogenase expression/formation protein). HypE is involved in Ni-Fe hydrogenase biosynthesis. HypE dehydrates its own carbamoyl moiety in an ATP-dependent process to yield the enzyme thiocyanate. The N-terminal domain of HypE is related to the ATP-binding domains of the AIR synthases, selenophosphate synthetase (SelD), and FGAM synthase and is thought to bind ATP.	5.30496e-162
CP026377.1\|AUX92751.1\|1389259_1389523_-\|hypothetical-protein	gnl\|CDD\|179912	PRK04998, PRK04998, hypothetical protein; Provisional.	2.47647e-62
CP026377.1\|AUX92749.1\|1387380_1388346_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
CP026377.1\|AUX92745.1\|1384870_1385080_+\|cold-shock-protein-CspE	gnl\|CDD\|169931	PRK09507, cspE, cold shock-like protein CspE.	1.41163e-40

>CP026377.1|AUX92742.1|1381596_1382913_+|gluconate-transporter
MPLVIVAVGVVLLLLLMIRFKLNGFIALILVALAVGMMQGMPVNKVIASIKTGVGGTLGSLALIMGFGAMLGKLLADCGGAQRIATTLIAKFGQRHIQWAVVLTGFTVGFALFYEVGFVLLLPLVFSIAASARVPLLYVGVPMAAALSVTHGFLPPHPGPTAIATLFDADMGKTLLFGTLLGIPTVILAGPVYARFLKNIDKPIPEGLYNPKTFSEAEMPGFGVSVWTSLVPVILMALRAVAEMFLPKGHALLPWAEFFGDPIMATLIAVLIGIFTFGLNRGRSMEEVMNTLTDSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIAGLMHETNVSPIFMAWSIAAVLRIALGSATVAAITAGGIVAPLIATSGASPELMVIAVGAGSVIFSHVNDPGFWLFKEYFNLTIGETIRSWSALETIISVCGLVGCLLLSAMI
>CP026377.1|AUX92741.1|1380162_1381305_-|alcohol-dehydrogenase
MLTSQTIANRQTFFGRGSLQQLPSLLQQQPQPTLLFCGASFLHGPHYAALAPALTPLLIGHEIVAHEASPDEIDRWVARWRGQATRVVAIGGGSVLDAAKAFAAVSQHPLNTLRYLEKVGDTPVSGATLPVIAIPTTAGTGSEATQNAVVTDKGEVKVKASLRHASFVPPVAILDADLLDNTPDQILVCCAIDAFTHLFEAWLSAKGTLFTRQTALSGMRLFVQAWPALNRQDRQGEAAREAMLMASWLGGQSLSMAGLGVIHGIAGELGAIKDYHHGEVCGRLLLPFLDLLASSDHPQQRALMAELDLALFGAAHAEPARYLAQWLQAQAVYPFWRAPPPLSVEETGWILARANSKNSLVDYSDAQMREMLTQAYRCDA
>CP026377.1|AUX92740.1|1379230_1380052_+|HAD-family-hydrolase
MAEVKLVAVDMDGTFLDDGKNYNRARFQQQYAQLKARGIRFVVASGNQYYQLRSFFPEIADEIAFVAENGAYVVEAGEDRFVGEFSRDDVVKIIDTLRRGNYPGLNFVLCGYHSAWYFPDAPADYIDKMRRYCHRLQAASHLDEINDRLFKFALNLSDEYVPILMTDIERHHAGVATAVTSGHGSADLIIPGLHKAHGLALLQQRWGIGTQQVLAFGDGGNDLEMLHQAGFGFAMANAPERVKAAARYQAPTNNQQGVLEVIQQLLDGRAPFA
>CP026377.1|AUX92739.1|1376984_1379066_+|formate-hydrogenlyase-transcriptional-activator-FlhA
MNARKQKGLLELTYSLLQQQSMTSLIETLNQTVQHAGIADAVSLVLFNGDGARVSFYGVDAHRQPIGYEDETLLATGPVSALRDRAETQAWRSAALHLRYPQLAVLKLYPPFSDYCLVPLLASSRLLGGCEFIRQRGRPFSEEDQNGLYEFCMLVAIAVEQVQLRESMRLQQSLLRHERDNFSILVDITNAVLSRLDLDELTGEIARVIHHFFHINAISIVLCNAGKESAWADVYATLYVQEHQARREQSRKALAGSPEEQVMKSGEMTLLSVGPASAPYSEDGSLFQRLWPDRDKTLCMLPLRFGQKTLGVLKLAQPQPDNFNAANLRVLEQIAERIAIAVDNALAYQEIKNLKEKLQHENRYLTEQINSDNADFYDIVGRSAAMAEVLKQVQIVAKSDCTVLILGETGTGKELIARAIHHLSDRHHKRMVKMNCAAMPAGLMESDLFGHEKGAFTGATSQRMGRFELADEGTLFLDEVGEIPLELQPKLLRILQEQEFERVGGSKQISVNVRVIAATNRDLQQMVKEKTFRSDLFYRLNVFPIVIPPLRERPEDIPQLVKFLTCKIAKRMQRTIESIPAETLRLLSRMPWPGNVRELENVIERAVLMTRGTVLDLPLPEMNDGLARFAGASVPASAAPASPTHEDERERIVQALKESNGVVAGPRGAAARLGLKRTTLLSRMKKLGISAKS
>CP026377.1|AUX95397.1|1375844_1376867_+|hydrogenase-expression/formation-protein-HypE
MSPRAQGVTMAHGSGGRAMQQLIEQMFLQAFDNPWLREQEDGARLALSDLCAQGDRLAFTTDSYVIDPIFFPGGNIGKLAVCGTANDLAVCGATPAWLSCGFILEEGFSLDALREIVSAMAQTARDAGIAIVTGDTKVVQRGAADKIFINTSGIGAIPSAVRWAATAMQPGDKVIVSGTLGDHGATILNLRERLGMDLGVESDCAVLAPLIAPLHAIAGVRALRDATRGGVNAILHEFARASGYGIVIDENALPVRPAVRGICELLGLEPINFANEGKVVLVTSPQAEATTLKALRSHPLGRDAATVGEVTPEPQVALRGLLGVTRQLMLPHAEPLPRIC
>CP026377.1|AUX92738.1|1374693_1375833_+|hydrogenase-formation-protein-HypD
MRFVDEFRDAQLAQKLVERLHQRAARLPFSAQKPMQVMEVCGGHTHAIFKFGLDKLLPPQLEFIHGPGCPVCVLPMGRIDACCDIAAQPGVIFCTFGDALRVPGKQGSLLQARERGADVRVIYSPLDALQLARENPQRQVVFFALGFETTMPVTAVTLQQARREKRLNFTVFCQHISLMPTLRSLLQREDVRIDAFLAPGHVSMVIGAAPYRFIQRQFGKPLVISGFEPLDMLQSVLMLVEQVNSARCRTENQYRRVVPAAGNPLAQQAIRAVFRRGGDSEWRGLGMIEASGIALTAEYADFDAERRFHPRRHAVSDDPRARCGEVLTGRCKPHHCPLFGHGCTPHNAFGALMVSSEGACAAWYQYRHQEMPLTERTAG
>CP026377.1|AUX92737.1|1374418_1374694_+|HypC/HybG/HupF-family-hydrogenase-formation-chaperone
MCIGIPGQIVALHPQPDSAWADVCGMRREVNVSLVSGGDRADLIGGWVLIHVGFALSRLDEQEARQTLAALQAMGEVEADVVLFLGAGEKR
>CP026377.1|AUX92736.1|1373684_1374428_+|hydrogenase-accessory-protein-HypB
MCSTCGCASGELHIEGVDSAHNQQHGIPFAPRRLVDIEMDILAKNNHIAAHNRAHFAAASQLALNLVSSPGAGKTTLLTQTLKRLASQVSCAVIEGDQQTSNDADRIRATGVAAIQVNTGKGCHLDAQMVHEALHQLAPPAHSLLFIENVGNLVCPASFDLGERHKVAVLSVTEGEDKPLKYPHMFAASSLMILNKIDLLPYLDFDVAACIANARQVNPAIGVILLSATTGEGMDRWLAWLEQQRCA
>CP026377.1|AUX92735.1|1373315_1373660_+|hydrogenase-maturation-nickel-metallochaperone-HypA
MHEITLCQYAVEMMQQHAQQHHARRITAVWLEVGAFSCVEPEALRFCFDIACRETLAEGCQLHLTTPAAESWCHDCRQAIALLSPGVLRCPQCGGRNLRVTADDGMKIKRIEIE
>CP026377.1|AUX95396.1|1372529_1372994_-|formate-hydrogenlyase
MSTLSELSSKADYIANRNHQLKSQWHAYQNSLIQAVNAENKKINHAFIFGEGDDIRFTLFHHFTVKIHLSDDFFSHEILYSLNIAPPAEPPHFIVFAQAALSDEGRVDEVIIRDKQAVFDHYLNKISALYQCLYDALHSNQPIYAQLEKLPRRA
>CP026377.1|AUX92743.1|1383253_1383499_-|hypothetical-protein
MSSVDTSMGRYSLKAKNAGNHIKGSIAINDEGGGQLSLQEFDEHYLDDVVNNVIYPVTGGNRDITRALRDEMIKAGFKQPH
>CP026377.1|AUX92744.1|1383907_1384102_-|hypothetical-protein
MVMKIRCTACGSKRFRYTTGDREGKSHHGAVCAYCFKPFTAQDVLPTTELDPITRCLIGQRSTG
>CP026377.1|AUX92745.1|1384870_1385080_+|cold-shock-protein-CspE
MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQSNGFKTLAEGQRVEFEITDGAKGPSAANVIAL
>CP026377.1|AUX92746.1|1385423_1385852_+|GNAT-family-N-acetyltransferase
MNIRPAQAEDSFALISLLNELGYGDTGSFMDRRLRQLIDHPDEVLLVAEDRQTVLGFLSLHFIPQLALEGDFARISYFCIAEGERSKGLGQHLLRHAEQLARDRGCDRLEVHCHEKRLKANQFYARENYLESPRYLIKQLIP
>CP026377.1|AUX92747.1|1385905_1386703_+|hydrolase
MKVAMGQFAVSREWRENAATCSRLMHQAQEQGAALLVLPEAVLATDMHDPGLAVREAQPLDGPFIAGLLSVSRGTTLTTILTLYIPDGPARAINAQLAIRDGEIVARYDKLHLYDAFTMQESQRVSAGHTVPPLVDVGAMKVGMMTCYDLRFPELARRLALDGADLLVLPSAWVRGPLKEMHWEVLATARALENTCYLMAVGECGPRNIGSSLIVDPLGVVIARAAESEALVFAELDAERLASARRMLPVLENRRFARPELNQET
>CP026377.1|AUX92748.1|1386847_1387048_+|twin-arginine-translocase-subunit-TatA
MEGISIAKLLVIGALIVLLFGTNKLRSLGGDLGAAIKGFKKAMKDEDTAAPAKAEEMPAERVTHKE
>CP026377.1|AUX92749.1|1387380_1388346_-|lipoyl-synthase
MSKPIQMERGVKYRDADKMALIPVKTVVTERQELLRKPEWMKIKLPADSSRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPLTPDSNEPAKLAQTIADMGLRYVVVTSVDRDDLRDGGAQHFADCISAIREKNPTIRIETLVPDFRGRMDRALEILTATPPDVFNHNLENVPRLYRQVRPGANYDWSLKLLERFKEAHPDIPTKSGLMVGLGETNAEIVEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPAEFDEMKEEAMAMGFTHAACGPFVRSSYHADLQAKGLEVK
>CP026377.1|AUX92750.1|1388518_1389178_-|octanoyltransferase
MQQPPLIVRQLGLRPWEPVSLAMHQFTDRRDADTPDELWLVEHHPVFTQGQAGKAEHLLMPGDIPVVQSDRGGQVTYHGPGQQVMYVLIDLKRRKLGVRQLVTAIEQTVVDTLTHYAVEAYARPDAPGVYVEGKKICSLGLRIRQGCSFHGLALNIAMDLAPFLRINPCGYAGLEMTQLSAWRAGVTPAEVQPVLVEQFLHQLAIPSASWQPADGLDLL
>CP026377.1|AUX92751.1|1389259_1389523_-|hypothetical-protein
MKTKLNELLEFPCSFTYKVMGLAQPELVDHVVEVVQRHAPGDYTPDVKPSSKGNYHSVSITINATHIEQIETLYEELGNIEIVRMVL
>CP026377.1|AUX92752.1|1389623_1390835_-|serine-type-D-Ala-D-Ala-carboxypeptidase
MNTLKTCHYFKRLAAGTVIALSLSQAALAEDVNIKTMIPGVPDIDAEAYILIDYNSGKVLAEKNADARRDPASLTKMMTSYVIGQAIKAGKIHQDDIVTVGQDAWATGNPVFRGSSLMFLKPGDRVPVSQLTRGIVLQSGNDACVAMADYVAGSQDAFVGLMNNYVKALGLQNTHFQTVHGLDAEGQYSSPRDMALIGQALIRDVPEEYAVYKEKEFTFNNIRQTNRNGLLWDTSLNVDGIKTGHTASAGYNLVASATEGQMRLISAVMGGHTFKGREIESKKLLTWGFRFFETVAPLKAGKEFASEPVWFGNSDRVQLGVNKDMYLTIPRGRMKDLKASYVLSNTELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLNEVPEGGFFSRIVDYIKLMFHHWFG

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Crispr_ID: CP026377_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_3

1506709-1506790

Orphan

Consensus_repeat	Method
TTAGCGAAAGTCGCGTTCTTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_3

>merge|CP026377|3|1506709-1506790|CRISPRCasFinder
TTAGCGAAAGTCGCGTTCTTCCCGGTGCGCCGGGCACCGGACGCGACTTAGCGTGGGGTTTAGCGAAAGTCGCGTCCTTCCC

>CP026377|3|3|1506709-1506790|CRISPRCasFinder
TTAGCGAAAGTCGCGTTCTTCCC	GGTGCGCCGGGCACCGGACGCGACTTAGCGTGGGGT
TTAGCGAAAGTCGCGTCCTTCCC

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX92851.1\|1500777_1501230_+\|molybdopterin-synthase-catalytic-subunit-MoaE	unknown	unknown	gnl\|CDD\|182642
CP026377.1\|AUX92853.1\|1502179_1503268_+\|DUF1615-domain-containing-protein	unknown	unknown	gnl\|CDD\|369501
CP026377.1\|AUX92858.1\|1509157_1509919_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226098
CP026377.1\|AUX92857.1\|1507916_1509161_-\|cardiolipin-synthase-ClsB	unknown	unknown	gnl\|CDD\|236888
CP026377.1\|AUX92859.1\|1510096_1510489_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|314103
CP026377.1\|AUX92852.1\|1501226_1502021_-\|DUF1264-domain-containing-protein	unknown	unknown	gnl\|CDD\|369123
CP026377.1\|AUX92855.1\|1505441_1506152_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198414
CP026377.1\|AUX92854.1\|1503304_1505248_-\|chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
CP026377.1\|AUX95402.1\|1513413_1514613_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|235348
CP026377.1\|AUX92849.1\|1500052_1500538_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
CP026377.1\|AUX92856.1\|1506831_1507917_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223469
CP026377.1\|AUX92862.1\|1514588_1516193_-\|anion-permease	unknown	unknown	gnl\|CDD\|223383
CP026377.1\|AUX92863.1\|1516865_1517891_+\|DUF481-domain-containing-protein	unknown	unknown	gnl\|CDD\|377313
CP026377.1\|AUX92847.1\|1498534_1499521_+\|GTP-3',8-cyclase-MoaA	unknown	unknown	gnl\|CDD\|234672
CP026377.1\|AUX92846.1\|1497201_1498110_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|211689
CP026377.1\|AUX92860.1\|1510728_1512225_+\|ATP-dependent-RNA-helicase-RhlE	unknown	unknown	gnl\|CDD\|236722
CP026377.1\|AUX92861.1\|1512370_1513321_+\|tRNA-dihydrouridine(16)-synthase-DusC	unknown	unknown	gnl\|CDD\|236713
CP026377.1\|AUX92850.1\|1500530_1500776_+\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|182985
CP026377.1\|AUX92864.1\|1517946_1519026_-\|L,D-transpeptidase	unknown	unknown	gnl\|CDD\|182341
CP026377.1\|AUX92848.1\|1499534_1500050_+\|molybdenum-cofactor-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|131715

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX92851.1\|1500777_1501230_+\|molybdopterin-synthase-catalytic-subunit-MoaE	gnl\|CDD\|182642	PRK10678, moaE, molybdopterin synthase catalytic subunit MoaE.	2.58665e-107
CP026377.1\|AUX92853.1\|1502179_1503268_+\|DUF1615-domain-containing-protein	gnl\|CDD\|369501	pfam07759, DUF1615, Protein of unknown function (DUF1615). This is a family of proteins of unknown function expressed by various bacterial species. Some members of this family are thought to be lipoproteins. Another member of this family is thought to be involved in photosynthesis.	0
CP026377.1\|AUX92858.1\|1509157_1509919_-\|hypothetical-protein	gnl\|CDD\|226098	COG3568, ElsH, Metal-dependent hydrolase [General function prediction only].	9.05886e-79
CP026377.1\|AUX92857.1\|1507916_1509161_-\|cardiolipin-synthase-ClsB	gnl\|CDD\|236888	PRK11263, PRK11263, cardiolipin synthase ClsB.	0
CP026377.1\|AUX92859.1\|1510096_1510489_+\|hypothetical-protein	gnl\|CDD\|314103	pfam11076, YbhQ, Putative inner membrane protein YbhQ. This family is conserved in Proteobacteria. The function is not known but most members are annotated as being inner membrane protein YbhQ.	4.33987e-52
CP026377.1\|AUX92852.1\|1501226_1502021_-\|DUF1264-domain-containing-protein	gnl\|CDD\|369123	pfam06884, DUF1264, Protein of unknown function (DUF1264). This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 200 residues long. Some family members are annotated as putative lipoproteins.	1.42911e-109
CP026377.1\|AUX92855.1\|1505441_1506152_+\|hypothetical-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.10477e-75
CP026377.1\|AUX92854.1\|1503304_1505248_-\|chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.31913e-94
CP026377.1\|AUX95402.1\|1513413_1514613_+\|MFS-transporter	gnl\|CDD\|235348	PRK05122, PRK05122, major facilitator superfamily transporter; Provisional.	3.43196e-155
CP026377.1\|AUX92849.1\|1500052_1500538_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	6.73019e-102
CP026377.1\|AUX92856.1\|1506831_1507917_-\|hypothetical-protein	gnl\|CDD\|223469	COG0392, COG0392, Predicted integral membrane protein [Function unknown].	8.94554e-52
CP026377.1\|AUX92862.1\|1514588_1516193_-\|anion-permease	gnl\|CDD\|223383	COG0306, PitA, Phosphate/sulphate permeases [Inorganic ion transport and metabolism].	1.48059e-43
CP026377.1\|AUX92863.1\|1516865_1517891_+\|DUF481-domain-containing-protein	gnl\|CDD\|377313	pfam04338, DUF481, Protein of unknown function, DUF481. This family includes several proteins of uncharacterized function.	3.61541e-37
CP026377.1\|AUX92847.1\|1498534_1499521_+\|GTP-3',8-cyclase-MoaA	gnl\|CDD\|234672	PRK00164, moaA, GTP 3',8-cyclase MoaA.	0
CP026377.1\|AUX92846.1\|1497201_1498110_-\|hypothetical-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	1.29621e-118
CP026377.1\|AUX92860.1\|1510728_1512225_+\|ATP-dependent-RNA-helicase-RhlE	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
CP026377.1\|AUX92861.1\|1512370_1513321_+\|tRNA-dihydrouridine(16)-synthase-DusC	gnl\|CDD\|236713	PRK10550, PRK10550, tRNA dihydrouridine(16) synthase DusC.	0
CP026377.1\|AUX92850.1\|1500530_1500776_+\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|182985	PRK11130, moaD, molybdopterin synthase small subunit; Provisional.	1.23615e-48
CP026377.1\|AUX92864.1\|1517946_1519026_-\|L,D-transpeptidase	gnl\|CDD\|182341	PRK10260, PRK10260, L,D-transpeptidase; Provisional.	4.06052e-161
CP026377.1\|AUX92848.1\|1499534_1500050_+\|molybdenum-cofactor-biosynthesis-protein-B	gnl\|CDD\|131715	TIGR02667, Molybdenum_cofactor_biosynthesis_protein_B., molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	9.69874e-93

>CP026377.1|AUX92855.1|1505441_1506152_+|hypothetical-protein
MDRFPHSQDTIVQRAGTGLQTYMAQVYGWMTCGLLLTAFISWYAANTPAVMELVFANRMTFFGLVIAQLAVVFVLSGLVHKLSGALATALFMLYSALTGLTLASIFLVYTYSSIASTFFVTAGMFGAMSFWGYTTKRDLSKMGSILFMALIGLLLASLVNFWLKSPALMWAITYIGVLVFVGLTAYDTQKLKAIGEQIDVRDKENLRRYSIMGALTLYLDFINLFLMLLRIFGNRR
>CP026377.1|AUX92854.1|1503304_1505248_-|chemotaxis-protein
MSHSLTTRRKMRTRTLMLISGMLTISLGFMLTIGLLSSQSRQQQRQLAQDYLQQIAQANAQQVQNRFDGALHAARALATGAWSLHEAGLSERRALDRLLVDTLNAHGDFLSMSLAFEPNAFDGKDATFAGQPDQDPAGRYVRYVAREAGRPALHNLTDYEKAGSGDYYLLPRQRMKEVILEPYLYPYNGVDVMLTSIAAPIVVDGQFKGSVTTDFSLATLQKAISAIKPWQGKGYALLLSNDGKVIAGPDASQAGKAWTGAQNSAAGVQEQQDAWLKEAALISWQPINVGNSGTPWRLAIVAPVSEVMAAANRQLVHALVLMLVSIVVVCGVLGLIFTRKIARPIGGEPAEAASLALAVAQGDLSRPISVQTNDSQSIFYAMQTMQQQLRNMVGEIMTASASVRSGASEIASGNLDLSSRTEQQASALQETAASMEQLTATVKLNADNAHHATNLTGNATAVAQRGETLVRQVVEIMGQIDESSRKIGDITSMINSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSANAVKEISALIEESAARVSSGVSLVNETGQTMQAMTESVSAVQSIIDEIVNASDEQSLGISQVSVAVNEMDGVTQQNAALVQEMSAAAASLEDQARQLAETVSTFQLEPHA
>CP026377.1|AUX92853.1|1502179_1503268_+|DUF1615-domain-containing-protein
MSFQRFRLLPLVALLALAGCTSKQPQTPQQTPQQVQARVIKLMPADVRQKADWAGDIATAFRTQKIEPSDSHICAVIAVADQETNFNADAPVPGLPKIAWGEIDKRAARLHIPAFLVRTALMIKSPNGRSYADRLDSVRTEKELSAVFDDFINMVPMGQTLFGNLNPIHTGGPMQVSIAFAEANAQGYPWPVENSIRQEVFTRHGGIWFGVKHLLGYPANYSAPLYRFADFNAGWYASRNAAFQAAVARVTGMKLALDGDLILYGSDKAGATELAVRTLGAQLDMSDRAIRRDLEKGEKPDFAESALWKQVFTLADKQAGRRLPREMLPGIALESPKITRKLTTAWFAQRVDSRYQQCMARR
>CP026377.1|AUX92852.1|1501226_1502021_-|DUF1264-domain-containing-protein
MKKLWLPALSALMLAGCGANNTPAQVQTPGAPTSAKMKLLDTGAAALQSRPPIDAINAYLDGFHFYSGDKNGQMEAHHYVTILNDDVMQALIYDGNTRDARLMGVEYIISERLFKTLPPEEKKLWHSHSYEVKSGTLVAPGLPDTADKALMTKLVNTYGKTWHTWHTDRDKTLPFGIPALMMGFTADGQLDQRLLKDRDARFGIDSRKMRQERADIVANPVVKGANAWQNGDPIQLQRVKGGGEHAHGDTEFGPSEQTKRHKTP
>CP026377.1|AUX92851.1|1500777_1501230_+|molybdopterin-synthase-catalytic-subunit-MoaE
MTTRIRVGQPPFSVADEYQWLSASNEDGAIVTFTGKVRNHNLGDNVSALTLEHYPGMTEKALAEIVGEARTRWPLHLVSVIHRVGALFPGDEIVFVGVSAAHRGAAFEAAEFIMDYLKTRAPFWKREATPQGDRWVEARDSDRQAAGRWD
>CP026377.1|AUX92850.1|1500530_1500776_+|molybdopterin-synthase-sulfur-carrier-subunit
MIKVLFFAQVRELVETAALSLTAEYATVEELRTALAARGDRWDLALTPGKLLASVNQTLVSLQHPIQDGDEVAFFPPVTGG
>CP026377.1|AUX92849.1|1500052_1500538_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MSQLTHINAAGEAHMVDVSAKAETLREARAEACVVMAPATLQMIIEGRHHKGDVFATARIAGIQAAKRTWELIPLCHPLMLSKVEVELTAEPEKNRVRIESVCRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIESVRLLQKSGGKSGDFQAVDHD
>CP026377.1|AUX92848.1|1499534_1500050_+|molybdenum-cofactor-biosynthesis-protein-B
MGKATQEFQATRIAVLTVSDRREAHDDTSGDYLREAATEAGHQVLDHAIVADNLYRIRAVVSSWIASDDIQVILINGGTGFNSKNSTPEALLPLFDREIEGFGEVFRMLSWEEIGSATLQSRAVAGMANQTLIFAMPGSTSACRTAWERIICEQLDARTRPCQFVSHLKKA
>CP026377.1|AUX92847.1|1498534_1499521_+|GTP-3',8-cyclase-MoaA
MNQFTDSYARKFYYLRLSITDVCNFRCTYCLPDGYKPQGATNKSFLSLDEIRRVTRAFASAGTEKVRLTGGEPSLRRDFVDIIAAVRENPGIRQLAVTTNGYRMARDVARWREAGLTSINVSVDSLDARQFHAITGQDKFHQVMRGIDAAFEAGFSKVKVNSVLMRDVNDRSLQTFLDWIRHRPIQLRFIELMETGDGGDLFKRHHISGEIIRDRLIMQGWQRQLRDRSDGPAQVFRHPDYQGEIGLIMPYEKDFCASCNRLRVSAVGNLHLCLFGDGGVPLRDLLASDAQQDELQARIAASLGRKKQTHFLHQGNTGITQNLSFIGG
>CP026377.1|AUX92846.1|1497201_1498110_-|hypothetical-protein
MRNRTLADLDRVVALGGGHGLGRVMSALAPLGSRLTGIVTTTDNGGSTGRIRRSEGGIAWGDMRNCLNQLITEPGVASAMFEYRFTGNGELAGHNLGNLMLKALDHLSVRPLEAINLIRNMLKVDAFLIPMSEQPVDLVATDSEGNMVYGETAIDTLTQAPQELMLHPNVSPTREAIEAVAEADLILMGPGSFFTSLMPVLLMEEMAQALRRTHAPLIFIGNLGRELSPAAAALRLEDKLAIMEETIGKKVIDAVVVGPRVDTQGVQDRLIVQQPLEAADIPYRHDRQLLRLALEQALQALG
>CP026377.1|AUX92856.1|1506831_1507917_-|hypothetical-protein
MSKVHPKWKLAKKILTWLFFIAVVVLLVVYARKVNWEDVWEVIVNYNRVAILSAVGLVIISYLAYGGYDLIGRAYCGHKLAKRQVMLVSFICYAFNLTLSTWVGGVAMRYRLYSRLGLSGSTITRIFSLSIATNWLGYILLAGVLFTAGMVPIPPGWFIGEGTLRLIGGLLALLVVVYLAACAFSKRRRWTIRGQKLALPSLRMALFQFAISCANWMVMGMIIWLLLGQKVDYPVVLGVLLISSIAGVIIHIPAGIGVLEAVFLALLRGEHATHGEIIAALLAYRVLYFILPLLLALVLYLWLESRAKHLRQKNERKMQQQDDAHRQDDAHAERQLSDAHRADAQAGESGALLSEPRGKGV
>CP026377.1|AUX92857.1|1507916_1509161_-|cardiolipin-synthase-ClsB
MTMSWRDGNRIQLLENGEQFFPRVFGAIQRAQHSVLLETFILFEDDVGNALHRELLAAAQRGVKIEMMVDGYGSPDLSDEFVSSLTAAGVRFLYYDPRPLVMGMRTNLFRRLHRKIVVVDGVIAFVGGINFSAEHNTDFGPEAKQDYAIEVKGPIVDDIGRFVQEAIGSEANTHRWWGHRSHRPAVNQKPGDAQALFVYRDNDEHRDDIEQHYLEMLDNAKEDVIIANAYFFPGYRLLREMKNAAQRGVRVRLIVQGEPDMPIVKVGAELLYNYLVEGGVEVYEYIRRPLHGKVAVADRQWATVGSSNLDPLSLSLNLEANLIIHDRQFNQTLRDNLERLLQEDCVRVQENKLPKRTWLQLSKSVIVFHFLRHFPAIAGWLPAHTPKVKQVAPPVQPELETQDRVDTDKQGVKS
>CP026377.1|AUX92858.1|1509157_1509919_-|hypothetical-protein
MSQKAQGFSFKVLTINTHKGFTSFNRRFILPELREAVRATSADIVFLQEVMGTHAVHPMQVENWPDTPHYEFLADTMWNDYAYGRNAVYPEGHHGNAVLSRFPIIDYENRDISVAGTEKRGVLHCRLQLPEGDRVLHVMCVHLGLRDAHREAQMKMMCEMIADIPADAPLVVAGDFNDWQTRANKMLKRCANLDEVFSVKHGRPARTFPARFPVLRLDRIYVRNAEVSQPWALPVRPWSHLSDHAPLAVEIHL
>CP026377.1|AUX92859.1|1510096_1510489_+|hypothetical-protein
MKWFNRIQIATGQPCLHISLHLMMFVALIWGWRERALVEVSSVLVAAYAAVFIAMLLTQRIPRLRRVGDFLEEITTTYYFGAAMLVLFLVSRLLHNNLLLACLGLVMLVGPALVSLLVKAPTPRVEKKRS
>CP026377.1|AUX92860.1|1510728_1512225_+|ATP-dependent-RNA-helicase-RhlE
MSFDSLGLNADILRAVAEQGYRDPTPVQRQAIPVVLEGRDLMASAQTGTGKTAGFTLPILQLLSAKAQPAKGRRPVRALILTPTRELAAQIGENVSDYSKYLNLRSLVVFGGVSINPQMMKLRGGVDLLVATPGRLLDLAQQNAVDLSHVEMLVLDEADRMLDMGFIHDIRRVLARLPAKRQNLLFSATFSDEIKTLAEKLLDNPSQVEVARRNTASEQVTQHVHFVDKKRKRELLSLMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGITAAAIHGNKSQGARTRALSDFKSGQIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDIERLLKREIPRMALPGFEPDPSIKAEPIVNGRQQRGGNGGGGGRSQGGRGQSARGQGGDRPAGQRQSASGERQPRRTSGEGNAPRRSGEGNAPRRTSGEGAPSRRLSGDRDGSQPRRPSGERSGQRSSRPRSDKPAGNR
>CP026377.1|AUX92861.1|1512370_1513321_+|tRNA-dihydrouridine(16)-synthase-DusC
MRVLLAPMEGVLDSLVRELLTSVNDYDLCITEFLRVVDQLLPVKSFLRLCPELQQQSRTSSGTLVRVQLLGQHPQWLAENAARAADLGSWGVDLNCGCPSKLVNGSGGGATLLKDPELIYRGAKAMREAVPAHLPVTVKVRLGWDSGDKRFEIADAVQQAGASELVVHGRTKEEGYRAECINWQAIGEIRQRLRIPVIANGEIWDWQSAQQCMAQTGCDAVMIGRGALNVPNLSRVVKYNEPPMPWPQVMALLHRYTRLEKQGDTGLYHVARIKQWLGYLRKAYPQADGLFTTVRTLKTSPAIAAAIDRHCEQAMA
>CP026377.1|AUX95402.1|1513413_1514613_+|MFS-transporter
MTPIPALTHAQLNRRILSVIVFTFFCYLSVGLPLAVLPGFVHHQLGYSAFMAGMIISVQYFATLVSRPQSGRLADALGPKKVVMLGMSCCGLSGALTVLAGLAVAIPWLSLSLLTAGRLFLGVGESFSSTGATLWGMNIVGPTQTARVISWNGVATYLAMALGAPLGVALNALMGVHGFATLVALMGVVGFALASGKPAVSVAVGARIPFHRVASKVWAYGVGLGLGTIGFGMIATFITLYFASRGWQGAAFALSLFSIGFVLMRLSFSRTITRYGGLPVSVCSFALECLGLLLIWQADTPWLVDAGAFLTGAGFSLVFPALGVEAVKQVEVQNQGAALGTYSAFLDLALGLTGPLAGLLISRAGINAIWPAAALMVLMALLLTLRLWLQARYRAINSA
>CP026377.1|AUX92862.1|1514588_1516193_-|anion-permease
MSDHGAFARYTTRFPSLYPQPSGRRQRVSLLLVGLLSMAGICWMMTQLSADIRDAFGGAPPFVSALLLCGALLLALGFVFINGMHDTANAVTTVIYTGTLSPARAVLISAIANMLGVLLASGVVAWGVMSLLPAEGMIALDSRHGYALIYALLLAAIVWNLASWYFAIPSSSSHALLGAMLGVGVASSLLNGQGALAGIDWRQAGWAGWALLLSPLLGFLAAALLLRLMKVLLPLSLTASGAPAERPPLWLRGMLILTSSGVSFAHGANDGQKGMGLMMVILLIALPGAFALNRAMPERELADLTLLTTQAQAQLPQRAGLSLTSAQAILDNSRQQQGARDGVLPALGAMTASLHQQLSGIKRLSELPPAETAALRLRMTLTADALQRLLAQENPLSGSQRALLASLTAQLKHASSVIPWWVKIVVALALGLGTLTGWQRIAITIGERTGKAPLTPIQGASSELVAMTTLGVAEQFGLPVSTTQVLTCGVAGSMVASRSPLQPRTLKRMGLVWLLTLPVCALLSALLYALFIAL
>CP026377.1|AUX92863.1|1516865_1517891_+|DUF481-domain-containing-protein
MLFFTFARLSRSAVWLAALYCGGAAGDTVWLHNGDRLSGTVRSLSDGKLVMDTDWGGTLSLNWSAVSTLSSQHAITLRNSQTGENYSVRLAAAEPGYLTVLRDRREEEKVPVSRIDEFMKARVKSDRLNWTGNIDAGVDLKHASTQTQDTRFAFNSKLSQGKWRHNLGATWNREKEDASVNTNNYSLRYALDYTFREQFFWQGRASYKRDWVEDLSEQGLIGTGPGYQFWDDELGSFSLSLLAGAFSYGYNDGSVDSHFGASLRWDYQRYLHGKTLTLFSHGEAGHSLDEDGIFTLDAEIGLRYALTSWSTLNIGYARDFVSGTRDTLNERRFTTGLGVKW
>CP026377.1|AUX92864.1|1517946_1519026_-|L,D-transpeptidase
MKKSLFAIASLAVALVAFSQQALAVVYPLPPANSRLTGENLEITIPQNSKLPLEAFAAQYQIGLSNMLEANPGVDVYLPQPGSKLIIPQQLILPDAPREGVVINSAEMRLYYYPKGTKTVVVLPIGIGELGKDTPINWTTTVQRKKAGPTWTPTKKMHEEYAARGETLPEIFPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRADDIKWLYDNVPVGTRVQFIDQPVKATVEPDGSRYVEIHNPLSTTEEQFKSRAPVPITLTPAVSKVMSDASVNQAVVDQALKARSGMPVKINGVAEEAPTPQQPEIVQPQPVQPVAPQSAGNVAPDQTQQPEGVAAPVVNGNSGS

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Crispr_ID: CP026377_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_4

1900891-1900961

Orphan

Consensus_repeat	Method
GCTTAATCGGTCGGTCGGCACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_4

>merge|CP026377|4|1900891-1900961|CRISPRCasFinder
GCTTAATCGGTCGGTCGGCACCGTTTTGCGCGCTGCGCTAAACCACGCGCTTAATCGGTCGGTCGGCACCG

>CP026377|4|4|1900891-1900961|CRISPRCasFinder
GCTTAATCGGTCGGTCGGCACCG	TTTTGCGCGCTGCGCTAAACCACGC
GCTTAATCGGTCGGTCGGCACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX93170.1\|1890891_1892085_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|365823
CP026377.1\|AUX93177.1\|1899250_1899526_+\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93183.1\|1904531_1906583_+\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
CP026377.1\|AUX93173.1\|1895291_1896167_+\|catalase	unknown	unknown	gnl\|CDD\|252986
CP026377.1\|AUX93184.1\|1906746_1907829_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227311
CP026377.1\|AUX93171.1\|1892081_1893989_-\|spermidine-dehydrogenase	unknown	unknown	gnl\|CDD\|379192
CP026377.1\|AUX93186.1\|1909193_1909862_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP026377.1\|AUX93185.1\|1908598_1908871_+\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93175.1\|1897317_1897644_+\|anti-adapter-protein-iraM	unknown	unknown	gnl\|CDD\|236633
CP026377.1\|AUX93174.1\|1896348_1896735_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|337856
CP026377.1\|AUX93182.1\|1903992_1904361_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93179.1\|1900220_1900814_+\|lysine-transporter-LysE	unknown	unknown	gnl\|CDD\|224199
CP026377.1\|AUX93187.1\|1909849_1910638_-\|ABC-transporter	unknown	unknown	gnl\|CDD\|236863
CP026377.1\|AUX93188.1\|1910630_1911434_-\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270315
CP026377.1\|AUX93181.1\|1902226_1903873_-\|malate-dehydrogenase-(quinone)	unknown	unknown	gnl\|CDD\|179979
CP026377.1\|AUX93176.1\|1897858_1898152_+\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93180.1\|1900968_1901211_-\|transcriptional-regulator	unknown	unknown	unknown
CP026377.1\|AUX93178.1\|1899876_1900143_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182903
CP026377.1\|AUX93189.1\|1911450_1912467_-\|2-oxobutyrate-oxidase	unknown	unknown	gnl\|CDD\|226022
CP026377.1\|AUX93172.1\|1894283_1894817_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX93170.1\|1890891_1892085_-\|alcohol-dehydrogenase	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	1.40364e-10
CP026377.1\|AUX93183.1\|1904531_1906583_+\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	7.65496e-110
CP026377.1\|AUX93173.1\|1895291_1896167_+\|catalase	gnl\|CDD\|252986	pfam05067, Mn_catalase, Manganese containing catalase. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Two families of catalases are known, one having a heme cofactor, and this family that is a structurally distinct family containing non-heme manganese.	2.88917e-82
CP026377.1\|AUX93184.1\|1906746_1907829_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	7.59559e-78
CP026377.1\|AUX93171.1\|1892081_1893989_-\|spermidine-dehydrogenase	gnl\|CDD\|379192	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.	5.80607e-08
CP026377.1\|AUX93186.1\|1909193_1909862_-\|metal-ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	7.87863e-94
CP026377.1\|AUX93175.1\|1897317_1897644_+\|anti-adapter-protein-iraM	gnl\|CDD\|236633	PRK09919, PRK09919, anti-adapter protein IraM; Provisional.	2.34653e-29
CP026377.1\|AUX93174.1\|1896348_1896735_-\|hypothetical-protein	gnl\|CDD\|337856	pfam10798, YmgB, Biofilm development protein YmgB/AriR. YmgB is part of the three gene cluster ymgABC which has a role in biofilm development and stability. YmgB represses biofilm formation in rich medium containing glucose, decreases cellular motility and also protects the cell from acid which indicates that YmgB has an important function in acid-resistance. YmgB binds as a dimer to genes which are important for biofilm formation via a ligand. Due to its important function in acid resistance it is also known as AriR (regulator of acid resistance influenced by indole).	3.27994e-10
CP026377.1\|AUX93179.1\|1900220_1900814_+\|lysine-transporter-LysE	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	5.26006e-22
CP026377.1\|AUX93188.1\|1910630_1911434_-\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270315	cd13597, PBP2_lipoprotein_Tp32, The substrate-binding domain of the 32-kilodalton lipoprotein (Tp32) from Treponema pallidum binds L-methionine; the type 2 periplasmic-binding protein fold. This group includes the lipoprotein Tp32, a periplasmic component of a methionine uptake transporter system, and its closely related homologs. The Tp32 has both structural and sequential homology to the MetQ family of substrate-binding protein, and thus it belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea.	1.1002e-106
CP026377.1\|AUX93181.1\|1902226_1903873_-\|malate-dehydrogenase-(quinone)	gnl\|CDD\|179979	PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.	0
CP026377.1\|AUX93189.1\|1911450_1912467_-\|2-oxobutyrate-oxidase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	4.14712e-124
CP026377.1\|AUX93187.1\|1909849_1910638_-\|ABC-transporter	gnl\|CDD\|236863	PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional.	4.53257e-133
CP026377.1\|AUX93178.1\|1899876_1900143_+\|hypothetical-protein	gnl\|CDD\|182903	PRK11019, PRK11019, DksA/TraR family C4-type zinc finger protein.	7.8827e-54

>CP026377.1|AUX93179.1|1900220_1900814_+|lysine-transporter-LysE
MDPGGFAIAILPVVLSPGASFTLTMNSALTEGFRGVLRILAGTALGIFTHALLVGLGITAALTAFPSLFGALKIAGALYLLWLGLRMIRSGMQAQPLQLSAQTKPVTLMQAWLANVINPKAVMLYLTVVSRFAGSVAGLGAWLLLASLHIIIMAAWLTMASQLLLHSVRKYSVARLRKWVDIGGGLLLLFFALGALR
>CP026377.1|AUX93178.1|1899876_1900143_+|hypothetical-protein
MASGWASDGAVNEQIDSTVNDGVARVRQAMGQGESEHYCQECGEAIPEARRQALKGVRYCLACQTELDKQHKNLSLYNRRGSKDSQLR
>CP026377.1|AUX93177.1|1899250_1899526_+|hypothetical-protein
MPDGRNDDSADTRPTSGKKPLICHTRENLPENSVALFCENIKKVRNIKAAFGRPFLRNVWKPTCNAFQAAGGIAIAACVAGVLPPPAAAEK
>CP026377.1|AUX93176.1|1897858_1898152_+|hypothetical-protein
MRDERAFFDAALCFIGAGGMGKIDIAGTTLIINAEFFPVVGTEGGNIEDIDWLYMTIHNQTGIRRFQPVARGEVIFCIVPQNKFQIVWRANKRKRCI
>CP026377.1|AUX93175.1|1897317_1897644_+|anti-adapter-protein-iraM
MCPLTGTIFSCVITQKNLKLIIWYQGETVVHAGDVLTTSGEELLINGVPGNIVIISVFPFNRPNWSLLSARTDCPANGAIKPAFCERSTQCRFKRCPYGLAERALSHG
>CP026377.1|AUX93174.1|1896348_1896735_-|hypothetical-protein
MVLYTASGNKGISVFGGFFSVKEVKAGGACLTSYYPFISESFQWRVVVNQESGIEVQIADYFKQSASQRLTQEEVMRTLADNIARTKETFKEKAMVSGLLEKLETESDAVKLQVYRQALELLLRKDRF
>CP026377.1|AUX93173.1|1895291_1896167_+|catalase
MFHHSSKMQFPVRVEKPDPEFAMLLQQAIGGVEGEIRVAMQYFFQAMGARGDARIRDLLMSTATEELGHIEMLAYAVALNLEGAPLSYQEASAKDPVVNAIMGGMNPRHILSSGLAALPVNANGMPFDMSHIYASGNVAADMLANVTAEATGRVLATRLYNMTEDKGMKDFLSFLIARDTMHQQQWLAVIEDMGGLNASLPIPNSFPQEHEASEHSYYCLNTSLDKPLPKGRWSEGPSYDGKGQFTAKEKPEILGDEPLLGPARPGSGAQNEQIAGAVPPTGSVPPSGTVK
>CP026377.1|AUX93172.1|1894283_1894817_-|hypothetical-protein
MNIACLGWSSLLWKPGALPVSGDWHADGPSLPIEFSRVGDNGELATAICINAPLVPVFWTRLAVDTLEQACDALRQREQIPEERTDGIGALLAQGAATGPLAEWAQARQIDAVIWTALPPRIAHSESLIPTLDDVVTYLSELQGEKRDHARHYLEQVPAQLDTPYRRGIKARIGWGA
>CP026377.1|AUX93171.1|1892081_1893989_-|spermidine-dehydrogenase
MGITRRDFLNGVAITLAAGLTPMQILRASPQTAQKTLTYPPALTGLRGNHPGSFEHAHQLGRDGRRFDFAAAPVEETYDLVVVGAGISGLAAACFWQQLKGKNQRILLLDNHDDFGGHARRNELNGDGASLLGYGGSESLQSPRSNFSPVAMGLLNSLGVSVDGLEQAFDKTFYPDLNLSRGVYFDRRNFGVDKLVSGDPGRMVADDIPRDRLNGRAYEDFINDFPLPESDRQALIALHTIEKDYLPDLSVAQKVEWLDSHSYTEFLRDKVGLSELAIRYFQQTTSDFQAVGIDATSCSDARICDLPGLNGMNLPPLDAESLADLEDPYVFHFPDGNASLARLMVRHLIPQVAPAGKDMHDIVLAKFDYSQLDRPDWPVKLRLSSTGLHVANVGDGVEVSYMTGDQLHKVRAGQAVMAGYNMMIPYLVPEMSPAQQEALKQNVKAPLVYSKVLIRNWQPFIQLGVHEVYCPTAPYCRVKLDYPVDLGGYRHPRDPQQPMGLHMVSVPALPGSGLSPREQARKGRAQLLGTSFDEHERLIREQLQGMLGEAGFDHQRDILAITVNRWSHGYSYFLNGLFDDEDEAQNIIATARQPVGRITIANSDADWSPYANSAIDQAWRAVSELAQGRTAKEEA
>CP026377.1|AUX93170.1|1890891_1892085_-|alcohol-dehydrogenase
MKLHLTALTLLLALSGGAQAMSHGEYIARAADCAACHTAENGAPLAGGLKFATPVGDIYATNITPDAQQGIGSYSFADFERAMRQGVAKDGHHLYPAMPYTAYAKMSEADLRALYDYLMHEVTPQPVANRDADIPWPLSMRWPLALWNRLFHQEARWRPQPQQSAQLNRGAYLVEGPGHCGSCHTPRGWAMQEQALDNRDARYLSGAELDGWYAPSLRGLPPEETVALLRSGRSAHAAVAGPMGEVVRHSTQYLTDDDRQAIAAWLHSLPANTSSAAAMPTAGAMQAGQQTYAMYCATCHGGDGEGVPGVIPRLAGNGALRAENPLTALRVVLEGAQTPTTDHDIAQTMPGYGWTLSDRQAADLMSYLRGSWGNQAAPVSEQQVRDARALSDKAEQR
>CP026377.1|AUX93180.1|1900968_1901211_-|transcriptional-regulator
MPLKVLSMVPATAATIKAARQAAGLTQAEAAERFDYSLRVWQKKEAEAGTAKSGGLTQGEYELLLLLGNLHPDYALAPKK
>CP026377.1|AUX93181.1|1902226_1903873_-|malate-dehydrogenase-(quinone)
MSHSTKLYSAISLAVMLACSNAYAESTTEKTDVLLIGGGIMSASLGTLLHDLQPDWKQLMVEKLDGVALESSNGWNNAGTGHSANMELNYTPERKDGSIDFSKALEINEAFMISRQFWSTQVKRGVLNDPHSFINSTPHMSFVWGDKNVEYLTKRYQALQQTTLFQGMQFSTDQQQIKKWAPLIIEGRDPQQKVAATWTPVGTDVNYGEITRQLIGSLKKNNNFTLETSTEATDFKRNDDNSWHVTVTDVKTGEKHAIDAKYVFIGAGGGALKLLQKTGIPEADNYAGFPVGGSFLVTENPAITSQHAEKVYGQASVGAPPMSVPHLDARFLDGKRVVLFGPFATFSTKFLKNGSFLDLLSTTTTKNVIPMTDVGLDNFDLVKYLIGQVMLSDEDRFEALKEYYPSARKEDWKLIQAGQRVQIIKKDAEKGGVLKLGTEIVTDQQKTLAALLGASPGASTAAPISINVIKKLFPEQFNSPEWQSKLHEVVPSYGKTLNGDVALTQQVWNETAATLKLTTPPVIQMKNVAPVAQPKQEAAKAPQHDMAL
>CP026377.1|AUX93182.1|1903992_1904361_-|hypothetical-protein
MARRFHTIFSGLFLLARAACGGDSCCFPFSQAGVLSLPLGLFHTAHRPVFYLCRWAYFAPRTGRCFTSAVGLISRRAQASILPLPLSLFHAAHRPVFYLCRWAYFTLLTGRVIFIRHGKNTL
>CP026377.1|AUX93183.1|1904531_1906583_+|FUSC-family-protein
MKWFSKNAVLFSLKTSLAAFLALSVALLLNFEKPAWAMTTVFVTSQLYAASTISKSVFRLAGTLLGGLFILLIYPETVQSPMLFSLCVSLWVTACLYLSLHDRTPKSYVFMLAGYSAAIMGFPDVTTPSAITWTVISRIEEITLGIICSTLIHRLLFPVSMQHLLEQSVDIWYRNARKLCNELVVRPPKDKSLEREDILIQMANYPLNVETLITHCVYEGEAARKVIRLVSVQYQHLSYLLPTLTAIETRLSLLAELQIRFPACVTQVLQQFLLWLNYDTVSHVGAVREALVQGKMALEQAWRQQALSAEESMLLLGLLERLANFVRVVDAYQTVSARASDLYSDGDAPLVKNPREHRHIDTGLLLLSSLTAFLATFLSSLFWIGSGWADGASAPLMAAIISSFFASIDSPVTPMKLFVKGVVVALAISLFYVGVLIPQANTLQALMMCLLPGLFALSLVIARPATNLIGLSVAIQIPGFIGLSHHYVPNLIATLNAAISSLVGILFAVTLTAIIRNKRPSWIAKRAVRKGIRDLLGFIKEIERNASSLLSRQQFVARMLDRVNIILPRKRLDPDPELIAGGDLITEAWLGANCYDFYARHREVLERYQLESGQMFHELGLYLKRRLRSLQSQPHQTLLEEINQLLLKLEPLALQDGAALAPLISLFNLRVSLFPQQRWPEKG
>CP026377.1|AUX93184.1|1906746_1907829_-|AraC-family-transcriptional-regulator
MNFANNCSSCDVVYDLDFPLTGHHAGSSGLRIGIVLWPAFPLLALAGLLDTLRHAADTGDNGGRPCCWRIMSDRPDDLIISSSGIGVKADCGYSDPKHFDYITVIGGLLPDLDKGSRAARGYLHAAARAGVTLAGICTGSFILAEEGMLEGRRAVVHPYHLQAFRDRFPGVHSITGCDYIDHGEIVTCPGGIATISLATELIRRHCGPERATHAIHQIAFPVKAAGAAPGVSRAHDFNRIADRRLRKAVFLVEQCLVKSVSTEWLAQQVNLSSRQLTRLFKSEFNKTPGEFIRASRLRYGKWLLRNSADSVTDIALRTGFSDCGHFIRCFQQEYGCTPGRYRASATVNGPPTEEYFANGK
>CP026377.1|AUX93185.1|1908598_1908871_+|hypothetical-protein
MALHHNFQRSPALKQKIENTVMHIAQDEANNSGVDKSWLLENNGEQYAKSALQTMAFYCESQPLEKSAAFDRLFNQRNCEVILQEIEKDR
>CP026377.1|AUX93186.1|1909193_1909862_-|metal-ABC-transporter-permease
MRSVNWDRFQALLLNATGETLYMVAIAALLTVALGLPVGILLFLTRRNGLLPNRAVALLLNALVNTGRALPFVVLLIALIPFTRLLVGTTLGSTAAIVPITIGAFPFFARIVENALDEVDRGRIEAVESMGGTLWHIVSRALLPEALPAILAGVTLTIVMLIGFSAMAGVVGGGGLGDLAIRYGYQRFDNQIMAATIALLLLLVLLVQKAGDRVVSMLARRR
>CP026377.1|AUX93187.1|1909849_1910638_-|ABC-transporter
MIEIENLSKHYPGAAAPALAEVSLTIETGAIFGILGRSGAGKSTLLRCLNRLERPSSGRVRVDGSDIGTLSLARLRRQRQQMGMIFQHFNLIHARNVYDNIDLPLAIAGMPARERRERVHALLQLVDLSAFAQAWPSQLSGGQKQRVGIARALAAQPRYLLCDEATSALDPETTASILDLLASIQRQLGITIVLITHEMAVVKRICDGAALLEHGRLVESGSLTQIMNRNEGRLRQMLLQDGEADRAFIARYQHRERSRCVA
>CP026377.1|AUX93188.1|1910630_1911434_-|metal-ABC-transporter-substrate-binding-protein
MMNKTVLTLAGLSLLVAQSLYAAPLRVAADPVPHAEILEYVKQLDPKLDLDIIELSGGVNANELLGAGDVDANYFQHLPYLKDQEKALGKTFDVVASVHVEPLGLYSHKVKSLAALPQGASIAVPNNPTNLSRALWLLQDKGLIRLSAQSAAGTTLVTPKDISANPKQINIIEIEAPQLPRSLDDVDAAVINGNYALEAGLTPAKDALGLESATHNPYANLLVTTPQLAKDPRVLALAKDLTSPQVAAFIRQHYNGSVIPVADEKHD
>CP026377.1|AUX93189.1|1911450_1912467_-|2-oxobutyrate-oxidase
MSHSSLALPVIDFAQLTRQTPQRAQAIDALGRTARDAGFFYLINHDIDQTLLDEVQRVARDFFALPQEEKLKVTMANSPHFRGYNLSGVEITRSQPDFREQFDIGADREALPVTPDSPTWQRMQGPNQWPAALPALRAVVTRWQQEMTRVALELLRSLAEALRLPRNAFDTLYGASPNEHIKLIRYPGRAAGQSRQGVGAHKDSGFLTLLLQDDQAGLEVELTPDNWVAASPLPGAFVVNIGELLELATNGYLRATVHRVVSPQADRERLSIAFFLGAQLDAVVPVYQLPPSLAQLAQGPASDPLNPLLREVGWNYLKGRLRSHPEVAQRFYPEHTSS

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Crispr_ID: CP026377_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_6

2286459-2286556

Orphan

Consensus_repeat	Method
GCTATGTAACCGGCGGCGGACGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_6

>merge|CP026377|6|2286459-2286556|CRISPRCasFinder
GTTATATGACCGGCGGCGGACGATTTCAGTCCCCCCAGCTATGTAACCGGCGGCGGACGATTTAAATCTCCCCGGCTATGTAACTGGCGGCGGACAAT

>CP026377|6|6|2286459-2286556|CRISPRCasFinder
GTTATATGACCGGCGGCGGACGAT	TTCAGTCCCCCCAGCTATGTAACCGGCGGCGGACGATTTAAATCTCCCCG
GCTATGTAACTGGCGGCGGACAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX95447.1\|2279710_2280064_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|185076
CP026377.1\|AUX93496.1\|2293089_2293962_+\|HTH-type-transcriptional-activator-RhaR	unknown	unknown	gnl\|CDD\|184092
CP026377.1\|AUX93488.1\|2283307_2284168_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|375319
CP026377.1\|AUX93498.1\|2295456_2296899_+\|aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143407
CP026377.1\|AUX93499.1\|2297101_2298025_-\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
CP026377.1\|AUX93497.1\|2294024_2295059_-\|L-rhamnose/proton-symporter-RhaT	unknown	unknown	gnl\|CDD\|115061
CP026377.1\|AUX93493.1\|2288375_2289218_-\|rhamnulose-1-phosphate-aldolase	unknown	unknown	gnl\|CDD\|179615
CP026377.1\|AUX93486.1\|2280312_2280555_+\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93494.1\|2289228_2290485_-\|L-rhamnose-isomerase	unknown	unknown	gnl\|CDD\|179217
CP026377.1\|AUX95449.1\|2290481_2291954_-\|rhamnulokinase	unknown	unknown	gnl\|CDD\|182609
CP026377.1\|AUX93492.1\|2288071_2288386_-\|L-rhamnose-mutarotase	unknown	unknown	gnl\|CDD\|131674
CP026377.1\|AUX95448.1\|2282109_2283204_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340913
CP026377.1\|AUX93487.1\|2281404_2281890_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
CP026377.1\|AUX93485.1\|2278218_2279574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227721
CP026377.1\|AUX93484.1\|2277720_2278170_-\|ribonuclease	unknown	unknown	gnl\|CDD\|238471
CP026377.1\|AUX95446.1\|2277447_2277708_-\|Barstar,-RNAse-(barnase)-inhibitor	unknown	unknown	gnl\|CDD\|225346
CP026377.1\|AUX93495.1\|2292252_2293077_+\|HTH-type-transcriptional-activator-RhaS	unknown	unknown	gnl\|CDD\|184094
CP026377.1\|AUX93490.1\|2286085_2286343_+\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX93491.1\|2286729_2287911_+\|sugar-transporter	unknown	unknown	gnl\|CDD\|179591
CP026377.1\|AUX93489.1\|2284285_2285713_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX95447.1\|2279710_2280064_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	1.32439e-39
CP026377.1\|AUX93496.1\|2293089_2293962_+\|HTH-type-transcriptional-activator-RhaR	gnl\|CDD\|184092	PRK13501, PRK13501, HTH-type transcriptional activator RhaR.	9.58645e-174
CP026377.1\|AUX93488.1\|2283307_2284168_-\|transcriptional-regulator	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	2.77995e-44
CP026377.1\|AUX93498.1\|2295456_2296899_+\|aldehyde-dehydrogenase	gnl\|CDD\|143407	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.	0
CP026377.1\|AUX93499.1\|2297101_2298025_-\|LacI-family-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	4.64814e-43
CP026377.1\|AUX93497.1\|2294024_2295059_-\|L-rhamnose/proton-symporter-RhaT	gnl\|CDD\|115061	pfam06379, RhaT, L-rhamnose-proton symport protein (RhaT). This family consists of several bacterial L-rhamnose-proton symport protein (RhaT) sequences.	0
CP026377.1\|AUX93493.1\|2288375_2289218_-\|rhamnulose-1-phosphate-aldolase	gnl\|CDD\|179615	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional.	3.23402e-173
CP026377.1\|AUX93494.1\|2289228_2290485_-\|L-rhamnose-isomerase	gnl\|CDD\|179217	PRK01076, PRK01076, L-rhamnose isomerase; Provisional.	0
CP026377.1\|AUX95449.1\|2290481_2291954_-\|rhamnulokinase	gnl\|CDD\|182609	PRK10640, rhaB, rhamnulokinase; Provisional.	0
CP026377.1\|AUX93492.1\|2288071_2288386_-\|L-rhamnose-mutarotase	gnl\|CDD\|131674	TIGR02625, L-rhamnose_mutarotase, L-rhamnose mutarotase. Members of this protein family are rhamnose mutarotase from Escherichia coli, previously designated YiiL as an uncharacterized protein, and close homologs also associated with rhamnose dissimilation operons in other bacterial genomes. Mutarotase is a term for an epimerase that changes optical activity. This enzyme was shown experimentally to interconvert alpha and beta stereoisomers of the pyranose form of L-rhamnose. The crystal structure of this small (104 amino acid) protein shows a locally asymmetric dimer with active site residues of His, Tyr, and Trp. [Energy metabolism, Sugars].	8.43867e-58
CP026377.1\|AUX95448.1\|2282109_2283204_-\|MFS-transporter	gnl\|CDD\|340913	cd17355, MFS_YcxA_like, MFS-type transporter YcxA and similar proteins of the Major Facilitator Superfamily of transporters. This group is composed of uncharacterized bacterial MFS-type transporters including Bacillus subtilis YcxA and YbfB. YcxA has been shown to facilitate the export of surfactin in B. subtilis. The YcxA-like group belongs to the Monocarboxylate transporter -like (MCT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.66697e-33
CP026377.1\|AUX93487.1\|2281404_2281890_-\|transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	5.59238e-15
CP026377.1\|AUX93485.1\|2278218_2279574_-\|hypothetical-protein	gnl\|CDD\|227721	COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane].	1.52819e-59
CP026377.1\|AUX93484.1\|2277720_2278170_-\|ribonuclease	gnl\|CDD\|238471	cd00933, barnase, Barnase, a member of the family of homologous microbial ribonucleases, catalyses the cleavage of single-stranded RNA via a two-step mechanism thought to be similar to that of pancreatic ribonuclease. The mechanism involves a transesterification to give a 2', 3'-cyclic phosphate intermediate, followed by hydrolysis to yield a 3' nucleotide. The active site residues His and Glu act as general acid-base groups during catalysis, while the Arg and Lys residues are important in binding the reactive phosphate, the latter probably binding the phosphate in the transition state. Barstar, a small 89 residue intracellular protein is a natural inhibitor of Barnase.	2.14702e-52
CP026377.1\|AUX95446.1\|2277447_2277708_-\|Barstar,-RNAse-(barnase)-inhibitor	gnl\|CDD\|225346	COG2732, COG2732, Barstar, RNAse (barnase) inhibitor [Transcription].	1.63635e-18
CP026377.1\|AUX93495.1\|2292252_2293077_+\|HTH-type-transcriptional-activator-RhaS	gnl\|CDD\|184094	PRK13503, PRK13503, HTH-type transcriptional activator RhaS.	2.98018e-172
CP026377.1\|AUX93491.1\|2286729_2287911_+\|sugar-transporter	gnl\|CDD\|179591	PRK03545, PRK03545, putative arabinose transporter; Provisional.	0
CP026377.1\|AUX93489.1\|2284285_2285713_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.00856e-36

>CP026377.1|AUX93490.1|2286085_2286343_+|hypothetical-protein
MAKYYYVNKKTGRSAIHRVHTADCPLLAPLEERFFLGTFYSQLDAVKQARKYYLRAEICESCGQRPLKKPSMKKSALPAAPLLSC
>CP026377.1|AUX93489.1|2284285_2285713_+|MFS-transporter
MNRTTLGRAGLIVLLAGQLLPMIDFSIVNVALDAMSASLRASAIELALIVAIYGIAFAVCLAMGSRLGDNFGRRKIFICGVWLFAIASLLCGVATDVRTLLLARALQGVGAALVVPQILATLHVTLQGRAHARAIGLYGGIGGLAFIIGQVMGGFLIGANVAGYGWRSVFLINLPVCLAILLTARRFIPETRNPQPLPLDIAGTLLLAGATGSLMVALALGPVLHWTWPCLLLLALFPLLLLQLWRTELALEKHGGAPLLPPLLLRLPSMRFGISLAVLFFSCWSGFMFAVALTLQSGAGMSAFSSGNAFIALGVAYFLVSICSTRIVERLGKRATLLLGCAIQMSGLLLLMATFYYGWASIGVLTLMPATLVIGGGQALIVSTFYRIGMADVPRDYAGAGSATLSTVQQAAFGMGPMALGSVFTQMLLQGDYRHAVLATLAVEWLLMLALAARTLWSRRTFAVAACRQTAAPQE
>CP026377.1|AUX93488.1|2283307_2284168_-|transcriptional-regulator
MTNATRSDIQEKSNHRLLGEFLRSRRESLDPVRLGLPRLRHRRTPGLRREEVAQLADVGVTWYTWLEQGREIKASAKTLSAIAAALQCNEAETQHLFRLAGQVWSAGSAGKACERLSAHTRIMLDSLNPLPAVVQNQRFDIMGHNQAWARLMNVDVETLPEEERNCMWLAFNHAGWRSAVADWHEVMPQMVGMFRAQMGEHLGDPVWEGFLERLLASSAEFRDTWQRYELRSIENRVKYFCHPQAGRLALRQNNWWSAPRNGDRLMVYMPDDEASARALQLITSSD
>CP026377.1|AUX95448.1|2282109_2283204_-|MFS-transporter
MAVLAAPVSQETGWSQQWIYGALSLAILISGLLAPLSGRIIARTGGRAMLAASGAVIAAGLTLIGLSHALWLFLLAWAVIGVGMAMGLYDALFATLGTLYGGAARRAITSITLISGFCTTLVWPFCAFLIAWLGWRHACFAYAALLLCSVLPAYRFALPPGGGQKAPTGRAQQPGGQALPGRLFWLLCAIFTLASVIMTAISVQLIALLQAQGYSLAGALAVSAVLGPCQVASRVVDIAFKRGHPIWTALFSVGLVALGLLMLTLFPHLAIASMLIYGAGNGLRAIVRGTLPLVLVSAQDYARVTGRMARPALIGQALTPLVGGWLFHSFGAQATLLTLCALALLNVLLTLLLRAQLPRDRAPA
>CP026377.1|AUX93487.1|2281404_2281890_-|transcriptional-regulator
MLDYRFPTALQMVLSVAMAEQSGKRSTSAILAYGLEANPSFIRKLMVPLTRDGIIVSTLGRTGSIHLGRPADQITLRDIYVSVIEDKKIWASRPEVPARCVVSANACWYFKAIAEEAEEASLKVLARRTVADALEELKTRDTSGCEAVPEPEPEISCKKSR
>CP026377.1|AUX93486.1|2280312_2280555_+|hypothetical-protein
MWFVLSEVEKITRKSRAQLENAMRSGRLAWRMSERGQVEIELSSVLSAFVGEQAGAVSADEASRRLEQQWEWLWHPRVAR
>CP026377.1|AUX95447.1|2279710_2280064_-|AraC-family-transcriptional-regulator
MRSDAFIHDLIDWIDNNIEGRLDLDTVSERAGYSKWHLQRMFKEHTGYPLGEYIRSQKLKKSADRLTTSNEPILNVAISLGFDSQQSFNRSFKRQFGKAPGAWRRSVVQQHGKSLQS
>CP026377.1|AUX93485.1|2278218_2279574_-|hypothetical-protein
MLISLDDYHPIADGQTPDTLCFQRALDDIASRGGGTLYIPPGPYLIGSLALPANLTLHLAAGATLLASSRPEDYTHPAQSQAECSTRALLYASGKSNIVIEGKGRIDGNAAAWFAVGADSQGYRLPLPNRPRMLVLEACRQVTLQDFTIEQAPMWTVHLVGCEQVRISRLCIDNDLTMANTDALDIDSCRYVHISDSYFSAADDGICIKTTRKPAPLRGPARHITITGVILRSNSCALKIGTETHDDIEDVVVTGCTILDSNRGIGLLSRDGGRFRRIAFSHITFTCRYGPPVHWGKADPVFISVRPRHADVVPGDIAWVTFSHLTGTMHGAINLHCEIPGALRHISFSHLLIDQLDSAHPDQSGYDIRPPCNPANPGGMGMDNAYAINPATQRPWGVEPWPEGMPGFYASGVTGLRLSELHIQRPDPLPPGWHPQPIVKRDCSDAPDVSV
>CP026377.1|AUX93484.1|2277720_2278170_-|ribonuclease
MSKKLWIGLIFVLVAAFIGLRPHLNPHPPAAPTAVAKGDISALTADRQVAGYLRQHQRLPDYYLTKAQARRQGWEPAKGNLCQALPGRAIGGDRFANREGGLPARAGRSWYEADVNYRCGRRSSDRLLYSSDGLIYLTTDHYRTFQRLE
>CP026377.1|AUX95446.1|2277447_2277708_-|Barstar,-RNAse-(barnase)-inhibitor
MRFDFSIIACRTDFYRCFAAQSGVGDHFGANLDALWDALTGDIALPARIVLCHAPSPDQSGELAAIFDLLEEAQQTLQGALALHYC
>CP026377.1|AUX93491.1|2286729_2287911_+|sugar-transporter
MQTPVSRKTAWLRVVLLAVAAFIFNTTEFVPVGLLSDIAASFSMKTPEVGVMLTIYAWVVALMSLPLMLATRNMERRLLLTGIFLIFFLSHILSLMAWSFWVLVASRVGIALSHAVFWSITASLAIRVAPAGKKTQALSMLATGTALAMVLGVPIGRIIGQYLGWRITFGMIGASALVLMLMLIKLLPKLPSEHTGSLSSVPMLFKRPALVSMYLLVTLVVTAHYTAYSYIEPFMQIIASQGENFTTFLLLIFGSAGIVGSIIFSVLGNKFPSALLLSAIGLITICMGLLLFAAVHPFAVSVLCIVWGMGMMTIGLAMQVRVLSLAPDATDVAMSLFSGIYNIGIGAGALLGNQVSLHFKMADVGNVGAIIGLLALFWCIFIFRRYPQLRSNG
>CP026377.1|AUX93492.1|2288071_2288386_-|L-rhamnose-mutarotase
MLRKAFVMQVYPHCHEAYQQRHSPIWPELEQTLKAHGAHRYSIFLDEQRSLLFACVEIESESRWEAVAQTEVCQRWWASMRELMPANPDNSPVSQPLKQVFYLE
>CP026377.1|AUX93493.1|2288375_2289218_-|rhamnulose-1-phosphate-aldolase
MQSILSSWFVQGMVKATSDMWLKGWDERNGGNVSMRLLPEEVAPFKQDFVADPRCIELSRPAPGLANDWFIVTGSGKFFRNVQLDPADSLALLQVDEKGLSYKIHWGLANGGVPTSELASHFQSHSVRKLRTHGADRVIMHCHATNFMALSYVVELDSARFTRLLWEGSTECLVVFPDGVGIVPWMVPGTDEIGDATAQQMQAHSLVMWPFHGIFGAGPTLDETFGLIDTAEKSSEVLVKVISMGGLRQSITTEQLIALGQRFNVEPWQAALDTGPAHVA
>CP026377.1|AUX93494.1|2289228_2290485_-|L-rhamnose-isomerase
MTRLTEQAFELAKQRFADTGVDVEAAMSRLDKIPVSMHCWQGDDVRGFENPQGALTGGIQATGNYPGRARNADELRADVDLALGLIPGPKRFNLHAIYLESDRPVARDAIEPQHFANWVSWAKERQLGLDFNPTCFSHALSADGFTLSHADAGVRQFWIDHCKASRHVSAWFGEQLGSPSVMNIWVPDGMKDLTIDRFAPRQRLMQSLDEVLAEKLNPAHHIDAVESKLFGIGAESYTVGSNEFCLGYAASRQTALTLDAGHFHPTEVISDKISTVMLYVPRLLLHVSRPVRWDSDHVVLLDDETLAIAQEIVRQKLFDKVHIGLDFFDASINRIAAWVIGTRNAKKALLRALLEPTAKLRALEAAGDYTARLALLEEQKSLPWQAVWEMWCLRHDVPADASWLRSVRDYEEQTLSQR
>CP026377.1|AUX95449.1|2290481_2291954_-|rhamnulokinase
MTHRNFVAIDLGASSGRIMLARYQPETQSLTLEQIGRFANRRHQTQGYDCWDLDALEQAIRDGLEQLLASGIVPESIGIDTWGVDVVMLDRAGERVGLPVSYRDQRTHGVMAQAQRELGRDLIWQHTGIQFLPFNTLYQLRAFSQAHPDKVDEVAHVLMIPDYLHYRLTGQLNWEYTNASTTQLLNLETGEWDSQLLSWAGARPAWFGAPRQPGTHVGVWQSRCGQRIPLVAVATHDTASAVLATPLASSDEAYLCSGTWSLLGFESATPFNSAAALSANVTNEGGAEGRYRVLKNIMGLWLLQRVCDELQIDDLCALIAEAERYPACQALIDANDARFINPASMVREIQDACAGQAMPVPHSPVALARTIFDSLALLYRQVAEELSTLRGAPLSRLHIVGGGSQNPLLNQLCANACRLPVSVGPVEASTLGNIGSQLIACGALADVEAFRRCVAQNFPSQLIHPLTDSALTDGWSRFQALKQPRKELCL
>CP026377.1|AUX93495.1|2292252_2293077_+|HTH-type-transcriptional-activator-RhaS
MTVLHSADFFPNGDLPVAIEPRAPQGVFPEHHHDFHEIVLVEQGAGIHIFNGQPQSLCGGCVCFVRDHDRHLYEQTENLYLTNVLWRGPQAFRFLAGLQDLLPQERDGRYPSHWRISNRVMAQAKALVTQLQDPDGGDATEQRVRQELTFMQLLVLLRQGGREQESDAQEARLLRLLDWLNEHYSEEVDWDALADRFSLSLRTLHRQLKQQTGSTPQRYLNRLRLLQARHLLRHSDMRITDIAFQCGFGDSNHFSTLFRREFGCAPRAERQQMW
>CP026377.1|AUX93496.1|2293089_2293962_+|HTH-type-transcriptional-activator-RhaR
MGLILAKADYFPSEAMPVAVADRTPQPSFPPHRHEFSEIVIVWRGNGLHVLNDRPWLVTCGDLFYIQHSDCHSYESVNDLVLDNILYCPERFRLGLDWSLLLPLDAADYRAHWRLTTRGMALARGVIVQLEQESRKTDLLSMQLAEALFLQLALILRRHRYVAERAGELPEGEQLDLLMSAIQASPARSFDLAAFCHHNRLSERALKQLFRQQTGMTIGHYLRQRQLCQAKYLLRSTDLLIGEVAARCGFDDSNYFSAVFTRETHFTPSAWRQRFERADNTAPPVAERQK
>CP026377.1|AUX93497.1|2294024_2295059_-|L-rhamnose/proton-symporter-RhaT
MNNAILAGIFWHLVGAASAACFYAPFKRVRHWSWETMWSVGGVMSWLILPWAVSAVLLPDFWGYYQQFTLAQLTPVFLFGAMWGIGNVNYGLTMRYLGMSMGIGIAIGITLVVGTLMTPLLQGRFMVLFSSTGGRMTLLGVLIALVGVAIVSRAGFLKERALGISAEEFNLKKGLVLAVLCGIFSAGMSFAMDAAKPMHEAAAAAGINPLYVALPSYVVIMGGGALVNLAYCFIRLAVKPSLSIRADFSLAKPLLGANIAFAALGGLMWYLQFFFYAWGHANIPAQYDFVSWMLHMSLYVLCGGIVGLLMKEWHAVGRRPVSVLSVGCLVIILAANIVGMGMAG
>CP026377.1|AUX93498.1|2295456_2296899_+|aldehyde-dehydrogenase
MATSQKQMFIDGEFQSHQGAWIEVINPATEAVIAQVPEGSAQDARRAIDAAAAAQPGWEALPAVERGRWLHKIAEGIRQREAELTAVIVAEGGKTQGLAQTEVLFTADYLDYMAEWARRYEGDIVQSDRPDENIFVFKKAIGVTTGILPWNFPFFLIARKAAPALITGNTIVLKPSEVTPVNAAIFAEIVQQVGLPKGVVNFVFGYGPVVGQELAANPKVGMVSLTGSVNAGIQTMAAAAQNVTKVSLELGGKAPAIVMNDADLDLAVRAIVSSRMINSGQVCNCAERVYVQEEIYDAFMTRLTAAFSKITWGNPAEQRDIDMGPLINADALKRVEEKVARAVEQGARLVTGGKRAGTTGYFFPPTILSGVTQEMTIMREEIFGSVLPVATFRTLDEAIALANDSDYGLTSSLYTQSLNTAMTALRQLKFGETYINRENFEAMQGFHAGWRKSGIGGADGRHGLEEYLQTHVAYLQFSPS
>CP026377.1|AUX93499.1|2297101_2298025_-|LacI-family-transcriptional-regulator
MASINDVSRLAKVSKATVSRVLSGSRGVKEESRDAVLRAVEKLNYKPNVIAQSLTRQRTHCVGVICATEHVQQATGYLQALEKALSQDGKHLLLRFANSAPAVAQAMEELGAGRCDAVMVVGARFALPDEAKQAVLIDCLDGGDGPQLAIDYQFASLTACHYLFSQQRRKIVLINFSRGEAAEQVLAGYCDALESVALPYNRQLVCGSEESVSVALQTLINRHIAFDALLVSDYIKSREAIALLRRFQRQVPQEVMVFSLDGAVPVVGAPEMPQMAWPLDMLAQRALQLIGGENIAFPPLRGSLIAP

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Crispr_ID: CP026377_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_7

3412294-3412375

Orphan

Consensus_repeat	Method
TTCTTCAGGTGCTGCCGCCCCTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_7

>merge|CP026377|7|3412294-3412375|CRISPRCasFinder
TTCTTCAGGTGCTGCCGCCCCTGCCTGCCCTGCGCATTAACGCCGGCGCGTTGCGGGTTTTCTCAGGTGCTGCCGCCCCTGC

>CP026377|7|7|3412294-3412375|CRISPRCasFinder
TTCTTCAGGTGCTGCCGCCCCTGC	CTGCCCTGCGCATTAACGCCGGCGCGTTGCGGGT
TTTCTCAGGTGCTGCCGCCCCTGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX94402.1\|3397306_3398581_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
CP026377.1\|AUX94416.1\|3417981_3418368_-\|Fe-S-cluster-assembly-scaffold-IscU	unknown	unknown	gnl\|CDD\|183087
CP026377.1\|AUX94415.1\|3417648_3417972_-\|iron-sulfur-cluster-assembly-protein-IscA	unknown	unknown	gnl\|CDD\|181914
CP026377.1\|AUX94410.1\|3412422_3413211_-\|enhanced-serine-sensitivity-protein-SseB	unknown	unknown	gnl\|CDD\|183229
CP026377.1\|AUX94418.1\|3419646_3420141_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	unknown	unknown	gnl\|CDD\|236777
CP026377.1\|AUX95515.1\|3417051_3417570_-\|co-chaperone-HscB	unknown	unknown	gnl\|CDD\|179914
CP026377.1\|AUX94408.1\|3403722_3406047_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|183049
CP026377.1\|AUX94403.1\|3398722_3399844_-\|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
CP026377.1\|AUX94409.1\|3406083_3411084_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225248
CP026377.1\|AUX94417.1\|3418392_3419607_-\|IscS-subfamily-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|184450
CP026377.1\|AUX94407.1\|3403105_3403537_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
CP026377.1\|AUX94405.1\|3400919_3401657_-\|type-IV-pilus-biogenesis/stability-protein-PilW	unknown	unknown	gnl\|CDD\|225605
CP026377.1\|AUX94414.1\|3415186_3417037_-\|Fe-S-protein-assembly-chaperone-HscA	unknown	unknown	gnl\|CDD\|235360
CP026377.1\|AUX94404.1\|3399883_3400930_-\|cytoskeleton-protein-RodZ	unknown	unknown	gnl\|CDD\|236776
CP026377.1\|AUX94401.1\|3396652_3397270_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225523
CP026377.1\|AUX94412.1\|3414591_3414792_-\|Fe-S-assembly-protein-IscX	unknown	unknown	gnl\|CDD\|170660
CP026377.1\|AUX94406.1\|3401750_3402920_-\|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|183031
CP026377.1\|AUX94411.1\|3413260_3414547_-\|aminopeptidase-PepB	unknown	unknown	gnl\|CDD\|235330
CP026377.1\|AUX95514.1\|3411360_3412209_+\|3-mercaptopyruvate-sulfurtransferase	unknown	unknown	gnl\|CDD\|236917
CP026377.1\|AUX94413.1\|3414847_3415183_-\|ISC-system-2Fe-2S-type-ferredoxin	unknown	unknown	gnl\|CDD\|131062

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX94402.1\|3397306_3398581_-\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	0
CP026377.1\|AUX94416.1\|3417981_3418368_-\|Fe-S-cluster-assembly-scaffold-IscU	gnl\|CDD\|183087	PRK11325, PRK11325, scaffold protein; Provisional.	9.24966e-96
CP026377.1\|AUX94415.1\|3417648_3417972_-\|iron-sulfur-cluster-assembly-protein-IscA	gnl\|CDD\|181914	PRK09502, iscA, iron-sulfur cluster assembly protein IscA.	4.30231e-68
CP026377.1\|AUX94410.1\|3412422_3413211_-\|enhanced-serine-sensitivity-protein-SseB	gnl\|CDD\|183229	PRK11611, PRK11611, enhanced serine sensitivity protein SseB; Provisional.	5.55748e-155
CP026377.1\|AUX94418.1\|3419646_3420141_-\|Fe-S-cluster-assembly-transcriptional-regulator-IscR	gnl\|CDD\|236777	PRK10857, PRK10857, Fe-S cluster assembly transcriptional regulator IscR.	2.13676e-112
CP026377.1\|AUX95515.1\|3417051_3417570_-\|co-chaperone-HscB	gnl\|CDD\|179914	PRK05014, hscB, co-chaperone HscB; Provisional.	1.40775e-87
CP026377.1\|AUX94408.1\|3403722_3406047_-\|penicillin-binding-protein-1C	gnl\|CDD\|183049	PRK11240, PRK11240, penicillin-binding protein 1C; Provisional.	0
CP026377.1\|AUX94403.1\|3398722_3399844_-\|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
CP026377.1\|AUX94409.1\|3406083_3411084_-\|hypothetical-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
CP026377.1\|AUX94417.1\|3418392_3419607_-\|IscS-subfamily-cysteine-desulfurase	gnl\|CDD\|184450	PRK14012, PRK14012, IscS subfamily cysteine desulfurase.	0
CP026377.1\|AUX94407.1\|3403105_3403537_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.45207e-90
CP026377.1\|AUX94405.1\|3400919_3401657_-\|type-IV-pilus-biogenesis/stability-protein-PilW	gnl\|CDD\|225605	COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion].	3.47754e-54
CP026377.1\|AUX94414.1\|3415186_3417037_-\|Fe-S-protein-assembly-chaperone-HscA	gnl\|CDD\|235360	PRK05183, hscA, chaperone protein HscA; Provisional.	0
CP026377.1\|AUX94404.1\|3399883_3400930_-\|cytoskeleton-protein-RodZ	gnl\|CDD\|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0
CP026377.1\|AUX94401.1\|3396652_3397270_-\|hypothetical-protein	gnl\|CDD\|225523	COG2976, COG2976, Uncharacterized protein conserved in bacteria [Function unknown].	1.58186e-75
CP026377.1\|AUX94412.1\|3414591_3414792_-\|Fe-S-assembly-protein-IscX	gnl\|CDD\|170660	PRK10721, PRK10721, hypothetical protein; Provisional.	7.70943e-38
CP026377.1\|AUX94406.1\|3401750_3402920_-\|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN	gnl\|CDD\|183031	PRK11194, PRK11194, ribosomal RNA large subunit methyltransferase N; Provisional.	0
CP026377.1\|AUX94411.1\|3413260_3414547_-\|aminopeptidase-PepB	gnl\|CDD\|235330	PRK05015, PRK05015, aminopeptidase B; Provisional.	0
CP026377.1\|AUX95514.1\|3411360_3412209_+\|3-mercaptopyruvate-sulfurtransferase	gnl\|CDD\|236917	PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional.	0
CP026377.1\|AUX94413.1\|3414847_3415183_-\|ISC-system-2Fe-2S-type-ferredoxin	gnl\|CDD\|131062	TIGR02007, 2Fe-2S_ferredoxin, ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	5.77153e-69

>CP026377.1|AUX95514.1|3411360_3412209_+|3-mercaptopyruvate-sulfurtransferase
MTSALFVTAQWLAEHQNDADLQIIDARMAPAGQEHLRDMRAEYRAGHLPNAPFFDIEQLSDRHSPYPHMMPRAESFAVAMRELGVDSSKHLVVYDEGNLFSAPRAWWMLRAFGVERVSLLAGGLAGWKQAGYALQTGDVALPEAEFEARYDASLVKSVTDVLLISHEGTAQLIDARPANRFNGEVDEPRPGLRRGHIPGSLNVPWGELVVDGQLKPEAELRDIFQRHGVDLTRPVVASCGSGVTAVVAILALTALGIKGVKLYDGSWSEWGSRDDLPLAKNV
>CP026377.1|AUX94409.1|3406083_3411084_-|hypothetical-protein
MAPCFTGHFRHGENMSGLRYRAGAALLLSLLLSGCDDDNKATPSTAAASKSAPAQAAPAISAEQRAAQLAREQGKPLQVIDISEVQLDGAGTLVVTFSVSLDDQQNVSQYAHLTDSKSGAVEGGWELSPNRKELRFRHLEPARQLKVRIDSGLKAANGATLAQTAEQTLTTRDIQPMVGFASRGSLLPTRIAKGLPVMALNVSQVDVDFFRIKTASLPSFIADWQYGNSLQTWQSESLLQKADLVYTGRFDLNPARNTREQLQLPLGDIKPLAQPGVYLAVMKQAGSYSYSNAATLFTLSDIGLSLHQFPQQVDLFSQRLEDGAPLEGVTLTMLDEKGQTLKQATTDDQGHVTLPWQAKAKLILATKNDQTSLLDLSRPALDLAEFAVAGPEGYDKQLFIFGPRDLYRPGETLIANALMRDADGKPLPPQPVKLEIVKPDGDVARTQVWQPEHGLWQLRYSLPQSAPTGRWMLRVDAGDGRPRQWPFSVEDFMPERMALSLSASADPVAPDSDITFRVNGRYLYGAPAAGNRLQGQLFLRPDREAVKSLPGYQFGDIVEEGLKRNLDEIDLTLDPQGETAVAAPSSWQEMHSPAQLILQASLLESGGRPVTRRVSQAIWPADVLPGIRPLFSSKEVYDYRNDTSTAQPVVDENGSAEFSIVLANARGEKVAGKQVEVRLIRERRDYYWSFAEGEGWQSRYDQKDLVEETRRLTLSDQGEVKVAFPVEWGPYRIEVAAPDETARSSVRFWAGYSWQDNTDGTGAVRPDQVKLKLDKANYQPGVRAQVHIEAPAAGKGYLMVESSNGPLWWQTVDVPAGGVDVEVPIDKAWRRHDLYFSALVIRPGDKAQGTTPKRAVGILHLPMQDEARRLNLTLTAPQKIRPNQNLTVKVKAAAGETLPKQVQVLLSVVDSGVLNITDYKTPDPYAAFFGRKRYNADQYDVYGQLIEGQGRLAALRFGGDGDEGDPLARGGKPPVNHVNILATQLQPVTLDANGEGTITLPIPEFNGEMRLMAQAWSDDRFGQSESNVVVAAPLITQLAMPRFLAGGDSSRLALDVTNLTDYPQTLMVNLQASGLVQLADSASRQLRLRPGQRTTLFIPVSAAMGYGEGAIDAVISGLEVPGETLPLSKGHWTIGVRPAWPAETRSFNSVVHADMPWQLPADALSGLAPETVQGQLALSGRPPLNIARYISELYAYPYGCLEQTISGLWPSLYTNHAELAALGIKSGSDAERRAAIDTGIDRIGQMQRYNGGFGLWSKESAEEFWLTAYAMDFLTRAVEQGYSVDKTMLAKGNERLLRYLQDGTQVEVYYSNDAAATRFNAQAYAALVLARQQKAPLGALRALYEQRAQAKSGLALVQLGVAMKLMGDAPRANALLNQGVNSTRPARLYWLEDYGSPLRDSAQILTLLREYQLLPKAQDQLIITLAQQLNAKQWLSTQENNALFLAGRALEQDEGATWQASLNGQALSPGNNPTRILPLSATQLAAGVAVASQSESPLYGRLDVVGYAQTPPGVVSQNLAVRREYLDLNGKPLSLASLESGQLLLVHLTVSANDRVPDALVTDLLPAGLELENQNLASSSASLGESAANVQELMSDMQQASIKHLEFRDDRFVAAIDVDGYRPVELLYLARAVTPGSYQVPAPQVESMYVPQWRATGATPARLTVR
>CP026377.1|AUX94408.1|3403722_3406047_-|penicillin-binding-protein-1C
MKAVLRTLKIILLSLCLLAALLWLADRLFPLPLRQVAPARVVVAEDGTPLWRFADKNGIWRYPVTPEEVSPWYLQALLTYEDRWFWHHPGINPLAILRAAWQDLRGGGIVSGGSTITMQVARLIDPQPRTLSGKLHQAWRALQLEWHLSKREILTLYLNRAPFGGTLEGIGAASWSWLGKPPSTLTRGEAALLAVLPQAPSRLRPDRWPERARAARDKVLLRLATYNVWPRSAVEEIMQEPVWLAPRQMPQLAPLLARRALSLSGQAKITTTINASLQRQIEALAQGWKGSLPPRTSMAVLVVDHTTMQVRAWMGSVDLDDDSRFGHVDMVSSVRSPGSVLKPFLYGLALDDGLIAGESLLQDVPRRFGDYRPGNFDSGFHGPVSASEALVRSLNLPAVQLLEAYGPKRMTAALRNIGLTLRFPAGAEPNLSLILGGTGARMDEIVAAYSAFARHGQAARLRLLAQDPLVERPLLSPGAAWIVRRILAGEALPQPDDALPAVAPLAWKTGTSYGYRDAWAIGINARYLIGVWVGRPDGTPVAGQYGVASAVPVLNQLHHLLMASPQLRGRILPADPRPASVSAQTLCWPGGQPLPAGDDSCRQRRQSWVLNDTAPPTLLADGQEGPFGLRQSLWLNAQGERVAADCSGARSQRMLLWPVPLEPWLQPGERRAQRLPPVSASCPPATDSSALPLLLTGVRDGQILHRLPGKSELSLSVAVQGGEGEGRWWFLNGEVLSAADGSLSQRLVFTRPGRYQLSVLDGAGQVAAASFTVE
>CP026377.1|AUX94407.1|3403105_3403537_-|nucleoside-diphosphate-kinase
MTVERTFSIVKPNAVAKNVIGAIYNRFEAAGFKIVAAKMLHLTKEQAEGFYAEHKGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLMGATNPANALAGTLRADYADSFTENATHGSDSQESAAREIAFFFGENEICPRTR
>CP026377.1|AUX94406.1|3401750_3402920_-|bifunctional-tRNA-(adenosine(37)-C2)-methyltransferase-TrmG/ribosomal-RNA-large-subunit-methyltransferase-RlmN
MSEHIVTPSSASPAVVSPKSEKINLLDLNRQQMREFFISLGEKPFRADQVMKWIYHYCSDDFDDMTDINKVLRNKLKQLTEIRAPEVAEEKRSADGTIKWAIRVGDQLVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIIGAAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIATFLDSVRRYLEKSNANQGRVTIEYVMLDHINDSTDDAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRVDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKKMAGEQISVKAL
>CP026377.1|AUX94405.1|3400919_3401657_-|type-IV-pilus-biogenesis/stability-protein-PilW
MRKGLRCLMLAVALVLAGCNGSRQAEGSGQIRLQLGLIYLSQGDRLAARRNLQRALQDAPGDYRVLLAMARLHEQEGDSATARHYYQAALKSAPQNSYALNNYGAFLCGLGQYDAAHQQFTRAAASKAFAASADSQERAGYCYLRQGEYASARRALLSALQADRQKADALLAEAERHLEQQEPEPTRLLLEVYHHSVPATAESLWLEIRFAALEQRTVDHADYGRQLAQNFPQSIQYQHFLANEY
>CP026377.1|AUX94404.1|3399883_3400930_-|cytoskeleton-protein-RodZ
MNTEATQDTTAANSTGARLRAAREQMGLTQQNVAERLCLKLSTVRDIEEDKSPADLASTFLRGYIRSYARLVHVPEEELLPMMAKQAPVRAAKVEPMQSFSLGKRRKKRDGWLMIFTWLVVFVVVGLTGAWWWQNHKAAQDDLVSLSDQSGSGEESSQSIPLTDNGSDDSSAQAQPAPADGTSVPLTNDSANNTSSVAANTAAPGASAPAPNNAAPATAPMAAAGNVDGNAVVSPSQAPVNAAPPASGNNAAPLPTGSASVSGPSADANAVVLDFNADCWLEVTDAAGKKLFSGMQRSGGKLSLSGTAPYRLKIGAPAAVQVHYQGQPVDLSRFIRTNQVARLTLGAQ
>CP026377.1|AUX94403.1|3398722_3399844_-|4-hydroxy-3-methylbut-2-en-1-yl-diphosphate-synthase
MHNEAPIIRRKSTRIYVGKVPVGDGAPIAVQSMTNTRTTDVEATVRQIKALERVGVDIVRVSVPTMDAAEAFRLIKQQVNVPLVADIHFDYRIALKVAEYGVDCLRINPGNIGNNERIRQVVECARDRNIPIRIGVNAGSLEKDLQEKYGEPTPQALLESAMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARAGAVKSAIGLGLLLSEGIGDTLRISLAADPVEEVKVGFDILKSLRIRTRGINFIACPTCSRQEFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGSNKKSGFYEDGVRQRDRLDNDDMIDQLEARIRAKAAMLDETRRIDVQQVEN
>CP026377.1|AUX94402.1|3397306_3398581_-|histidine--tRNA-ligase
MAKNIQAIRGMNDYLPADTVVWQRIEGILKQVLSSYGYSEIRLPVVEHTPLFKRAIGEVTDVVEKEMYTFDDRNGESLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYMGPMFRYERPQKGRYRQFHQIGAEVFGLQGPDIDAELIMMTARWWKALGIADHVKLELNSIGSLEARASYRDALVAFLEQHKETLDEDCKRRMYSNPLRVLDSKNPDVQALLNDAPTLGDYLDDESRAHFDGLCALLDSVGIAYTINQRLVRGLDYYNRTVFEWVTTSLGAQGTVCAGGRYDGLVEQLGGRATPGVGFAMGMERLVLLVQAVNPDFEPSRIVDVYVIASGQGVQSAAMQLAERVRDAAPSLKLMTNFGGGNFKKQFARADKWGARVALVLGEDEMNAGQVVVKDLRNGEQQTLAQDEVAAALVTLLS
>CP026377.1|AUX94401.1|3396652_3397270_-|hypothetical-protein
MEVYSNENEQVDAIRRFFANNGKALAVGVVLGIGALVAWRYWGTHQDSSSREVSAHYQQLTTALDASKPQTLEAVAKFANENSNTYGALASLDLAKQYVDKNELAKAAGQLQNGIKNTRDANLQAVMNLRLARIQLQQKQVDDALKTLDSVKGDGWTAIVADIRGEALLSKGDKQGARDAWSKGIASEASPALKEMMQMKMNNLG
>CP026377.1|AUX94410.1|3412422_3413211_-|enhanced-serine-sensitivity-protein-SseB
MNHTENTPNQRLEEVLQLAATEPAHRPEFFTLLMEASVWVPGTSTGEQLDASTPVDLQHWEKEDGTSVIPFFTSESAMAEATAGEQSYVMLPVRTLFEMTLGETLFLNPKLPAGKEFSAREIAHLLGEEGDALSEQTILEGGAPLLLSEIAEPPAQVIDSLTQLFSKHKQVRRAFVAHIKEQADDRPNLLIGIEADDDIDNIIRAAGAVATDTLLEDEPVDICEVVDGEQGISHFFTAHITPFYERRWGSFLREFKGGQRII
>CP026377.1|AUX94411.1|3413260_3414547_-|aminopeptidase-PepB
MATEKMNIALSTTAADARWGEKAILSSSGEGMTIHLTVGDALTTIQRAARKIDGQGIRHVVLSGDGWDLEKSWAFWQGYRGPKGERSVDWAPLGDDQRAELERRLSIIDWVRDIINQPAEELGPEQLARRAVDLIAKYAGDAVSYRITKGDDLREQNYMGLHTVGRGSTRGPVLLALDYNPGGDENTPVYACLVGKGITFDTGGYSLKPSAFMDSMKSDMGGAATVTGALGLAIARGLNKRVKLYLCCADNMVSGNAFRLGDIIRYRNGKTVEVMNTDAEGRLVLADGLIDASQQQPQLLIDAATLTGAAKTALGNDYHALFTFDDALAQQLLNSAESENEAFWRLPLAEFHRNHLTSNFADLNNIAGAAHTAGASTAAAFLSHFVSNYQQGWLHIDCSATYRKGAVEQWSAGATGLGVRTIANLLLK
>CP026377.1|AUX94412.1|3414591_3414792_-|Fe-S-assembly-protein-IscX
MGLKWTDSREIGEALYDAYPDTDPKTVRFTDMHRWICQLEEFDDQPDASSEKILEAILLVWLDEFE
>CP026377.1|AUX94413.1|3414847_3415183_-|ISC-system-2Fe-2S-type-ferredoxin
MPKIVFLPHQDLLPEGGVFDAAQGETILDVALRNGIDLEHACEKSCACTTCHCIVREGFDSLPESSEDEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPRYTINHAREH
>CP026377.1|AUX94414.1|3415186_3417037_-|Fe-S-protein-assembly-chaperone-HscA
MALLQISEPGQSAAPHQRRLAVGIDLGTTNSLVATVRSGQAETLPDAQGRHLLPSVVQYQAQQSLVGWDARRQAATDPVNTISSVKRLMGRSLADIQQRYPHLPYQLQPSENGLPLIQTAAGMLNPVRVSSDILQALAARARASLQGELDGVVITVPAYFDDAQRQGTRDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISVLRLSRGVFEVLATGGDSALGGDDFDHLLADWLREQAGLHDRGDHGMQRQLLDSAIAVKIALSDSDTVPVTLGDWQGVVTRDDFNALIAGLVKRTLMACRRALKDAGVMPEEVLEVVMVGGSTRVPLVREKVGEFFGRQPLTTIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQEFTTFKDGQTAMSIHVLQGERELVSDCRSLARFTLRGLPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTENEIASMITDSMVWAQQDVAARKLAEQKVEGLRVLESLEGALAEDAALLSEAERHAIQQAQRQLQEAIRGDEADTISAAVKQLNKVTQDFAARRMDNSVRRALAGHSVDEV
>CP026377.1|AUX95515.1|3417051_3417570_-|co-chaperone-HscB
MDYFTLFGLPQSFEIDAAQLTARFQELQRQFHPDRFASQPERERLQALQQAATINQGYQALRQPLPRAEYLLSLHGFDINNEQHTMRDTAFLMEQMELREELDAIEQASDAEAQLQAFMQRIEAMMQQRSAQMRQQLAEARWETAADTVRKLRFLAKLRSQSEALEEKLLDF
>CP026377.1|AUX94415.1|3417648_3417972_-|iron-sulfur-cluster-assembly-protein-IscA
MSITLSDSAATRVNAFLHNRGKGFGLRLGVRTSGCSGMAYVLEFVDAPEPEDTVFADKGVKVVIDPKSLIYLDGTELDFVKEGLNEGFKFNNPNMKDECGCGESFNV
>CP026377.1|AUX94416.1|3417981_3418368_-|Fe-S-cluster-assembly-scaffold-IscU
MAYSEKVIDHYENPRNVGSFDNSDPSIGSGMVGAPACGDVMKLQIKVSDAGIIEDARFKTYGCGSAIASSSLITEWVKGKSLDEAASIKNTQIAEELELPPVKIHCSILAEDAIKAAIADYKSKKDAQ
>CP026377.1|AUX94417.1|3418392_3419607_-|IscS-subfamily-cysteine-desulfurase
MKLPIYLDYSATTPADPRVAEKMMQYLTLDGTFGNPASRSHRFGWQSEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAAQFYQKKGKHIITSKTEHKAVLDTCRQLEREGFEVTYLAPQSNGIIDLKALEAAMRDDTILVSIMHVNNEIGVVQDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSAHKIYGPKGIGALYVRRKPRIRLEAQIHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMASEMARLRTLRNRLWDGLKDIEEVYLNGDLEQGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGMSDELAHSSIRFSLGRFTTEEEIDYTIALVRKSIGRLRELSPLWEMFKAGVDLNSIEWAHH
>CP026377.1|AUX94418.1|3419646_3420141_-|Fe-S-cluster-assembly-transcriptional-regulator-IscR
MRLTSKGRYAVTAMLDVALHSHEGPVPLADISERQGISLSYLEQLFSRLRKNGLVASVRGPGGGYLLGKSAADIAVGAVITAVDESVDATRCQGKEGCQGGERCLTHVLWHDLSERISDFLNNITLAELVNNKEILDIADRQNNETRRMANGRTQETININLRA

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Crispr_ID: CP026377_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_8

3496147-3496287

Orphan

Consensus_repeat	Method
ACGCTTGTCGGCGAGAAAATGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP026377_8

>merge|CP026377|8|3496147-3496287|CRISPRCasFinder
ACGCTTGCCTGCGCCCAAATCCGCCGGCCCCGTAGCGGGCGAGCAGCACCTGGGGATCCACGCTTGTCGGCGAGAAAATGCGTAGGCGCCGTTAGCCGACGGGCGCAGACCGAAGTGAGCGCTTGTCGGCGAGAAAATGCG

>CP026377|8|8|3496147-3496287|CRISPRCasFinder
ACGCTTGCCTGCGCCCAAATCCG	CCGGCCCCGTAGCGGGCGAGCAGCACCTGGGGATCC
ACGCTTGTCGGCGAGAAAATGCG	TAGGCGCCGTTAGCCGACGGGCGCAGACCGAAGTGA
GCGCTTGTCGGCGAGAAAATGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX94489.1\|3499756_3500221_-\|DUF1456-domain-containing-protein	unknown	unknown	gnl\|CDD\|227144
CP026377.1\|AUX94479.1\|3487365_3489240_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
CP026377.1\|AUX94490.1\|3500292_3501021_-\|two-component-system-response-regulator-YehT	unknown	unknown	gnl\|CDD\|236956
CP026377.1\|AUX94483.1\|3493037_3493919_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP026377.1\|AUX94491.1\|3501014_3502703_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
CP026377.1\|AUX94484.1\|3494281_3494644_-\|NUDIX-hydrolase	unknown	unknown	unknown
CP026377.1\|AUX94481.1\|3491324_3492146_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP026377.1\|AUX94493.1\|3503449_3503629_+\|DUF2158-domain-containing-protein	unknown	unknown	unknown
CP026377.1\|AUX94485.1\|3494651_3495269_-\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971
CP026377.1\|AUX94496.1\|3504816_3505755_-\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|181899
CP026377.1\|AUX94482.1\|3492190_3492916_-\|quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|380375
CP026377.1\|AUX94494.1\|3503719_3504268_+\|spermidine-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
CP026377.1\|AUX94488.1\|3496766_3498974_-\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	unknown	unknown	gnl\|CDD\|236640
CP026377.1\|AUX94477.1\|3486051_3486270_-\|XapX-domain-containing-protein	unknown	unknown	gnl\|CDD\|369277
CP026377.1\|AUX94495.1\|3504302_3504725_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX94478.1\|3486329_3487019_-\|hydrolase	unknown	unknown	gnl\|CDD\|238494
CP026377.1\|AUX94480.1\|3489245_3489668_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|311556
CP026377.1\|AUX94492.1\|3502855_3503287_-\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|274650
CP026377.1\|AUX94487.1\|3496296_3496689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377438
CP026377.1\|AUX94486.1\|3495355_3496111_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX94489.1\|3499756_3500221_-\|DUF1456-domain-containing-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	8.58435e-80
CP026377.1\|AUX94479.1\|3487365_3489240_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
CP026377.1\|AUX94490.1\|3500292_3501021_-\|two-component-system-response-regulator-YehT	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	2.07363e-154
CP026377.1\|AUX94483.1\|3493037_3493919_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.99446e-89
CP026377.1\|AUX94491.1\|3501014_3502703_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
CP026377.1\|AUX94481.1\|3491324_3492146_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.47778e-42
CP026377.1\|AUX94485.1\|3494651_3495269_-\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	2.74162e-78
CP026377.1\|AUX94496.1\|3504816_3505755_-\|homocysteine-S-methyltransferase	gnl\|CDD\|181899	PRK09485, mmuM, homocysteine methyltransferase; Provisional.	5.0228e-180
CP026377.1\|AUX94482.1\|3492190_3492916_-\|quercetin-2,3-dioxygenase	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.93687e-72
CP026377.1\|AUX94494.1\|3503719_3504268_+\|spermidine-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	5.18474e-131
CP026377.1\|AUX94488.1\|3496766_3498974_-\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	gnl\|CDD\|236640	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional.	0
CP026377.1\|AUX94477.1\|3486051_3486270_-\|XapX-domain-containing-protein	gnl\|CDD\|369277	pfam07235, DUF1427, Protein of unknown function (DUF1427). This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.	3.13186e-17
CP026377.1\|AUX94478.1\|3486329_3487019_-\|hydrolase	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	1.573e-67
CP026377.1\|AUX94480.1\|3489245_3489668_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	8.43818e-09
CP026377.1\|AUX94492.1\|3502855_3503287_-\|OsmC-family-peroxiredoxin	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	2.20568e-82
CP026377.1\|AUX94487.1\|3496296_3496689_-\|hypothetical-protein	gnl\|CDD\|377438	pfam04993, TfoX_N, TfoX N-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some proteins suggesting this is an autonomous domain.	1.88678e-30
CP026377.1\|AUX94486.1\|3495355_3496111_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.00332e-73

>CP026377.1|AUX94486.1|3495355_3496111_+|DeoR-family-transcriptional-regulator
MLTSQRKQLILQKLAAEGQVLSKMLSEEFNVSEDTIRRDLRELSAEGRLQRVHGGALPASAATVTFSERKNLRLDAKRAIAKRAAALIEPGQVVMIDGGTTTAELITFLPHSLQLTVVTHSPSIALGLADHPLIEVIMIGGRLFRHSLVAVGAAAIENVSRVRADIFFMGVTGIHAEAGLSTGDYEESCIKRAFAGRAAETVVMASPEKINAASAWVIGDLGLINTMVVEGDTEAHLLTPFSTKGITVIKA
>CP026377.1|AUX94485.1|3494651_3495269_-|GDP-mannose-pyrophosphatase-NudK
MPVKHAETGSLTAHRQAEVRIVESKTLSDDWYVLKKYTFDFRRRDGEWQRQSREVYDRGNGATLLLYNREKQSVILTRQFRFPLYVNHHSGFLLEAPAGLLDNLDPEECIRAEAEEETGYQVGQVQKVFEAFMSPGSVTEKLYFFIAEYQPDDRFSDGGGVKEEGEDIEVLEVHFQTALQAIRDGDIVDAKTIMLLHYLALNGIL
>CP026377.1|AUX94484.1|3494281_3494644_-|NUDIX-hydrolase
MNAELILIAGPYRSGTHGDETLIAQNLRRLEQAAWEVYQRGHVPVIGEWLALPLAKAAGSQRLDDEISESLLYPVAHRLIGKCDAIYRIGGASQGADKDIAVAQQHGLKIYRSAEEIAWL
>CP026377.1|AUX94483.1|3493037_3493919_+|LysR-family-transcriptional-regulator
MQIEDLRIFVAVVKAGSFTAAAEQLFLSKQYVSRRMAALEASLNARLLMRNTRRLSVTEAGLVFSQHAQRILDDIHEAERAVSANRQALHGVFRVSMPMSFGMSHLSPLIVRFMQQHPAVQIQTELADRYVDVIGEGFDMAIRIGKLADSTLIARRLGALKRVICASPDYLARTGTPRAPEDLLQHQCLRYGREGQNGWELQRAGKSALFEVRGPAISNNGELLRDAAVAGMGLVLLPEFIVAPAVARGALTTVLDDYWPAPLGLYAVYPQHRQRSEINRAFLDFLEAELKLG
>CP026377.1|AUX94482.1|3492190_3492916_-|quercetin-2,3-dioxygenase
MIERRLSEQRGLGNHGWLHSRHTFSFANYWDPKQTGFSDLLVINDDQVAPGRGFGSHAHSNMEIISYVLERALAHKDSMGTGSVIVPGDVQLMSAGSGVTHSEFNHSAQEDVHFLQIWVVPEENGTEPGYQQVSVAEAEKRGRLRLIVSPDGQQNSLRIRQDVKIYAGLFNGDEQQTFALDDSRYAYIHVARGSITVNGTLFKAGDGARVRDEDTLIFSGGNDAEVLLFDLRPLEVNHPTR
>CP026377.1|AUX94481.1|3491324_3492146_+|alpha/beta-hydrolase
MTMFTTQDGTQLYYKDWGTGKPVLFSHGWPLDADMWDSQLNFLAERGYRAIAFDRRGFGRSEQPWEGYDYDTFAADINDLLTHLDLHEVTLVGFSMGGGDVTRYLSRYGSARVSALALLGAVTPIFGKADDYPQGVDLSVFEGIRDGLRNDRAQFISDFAATFYGTNAGQSVSEGVLVQTLNIALLASLKGTIDCVTAFSETDFRPDMAKIDVPTLVIHGSNDQVVPFETTGKVAAEMIRNAELKVYDNAPHGFAVTHQERLNNDLLAFLQSR
>CP026377.1|AUX94480.1|3489245_3489668_+|LysR-family-transcriptional-regulator
MKSPYPFSPRIDAGLFFLRLSGSLLLLWVHGLPKVFHFSEELTRIEDPFGFGPWMSLLPAIFAEVVCPLLIIAGVGARLACLPIIGVLLVAMLAVHPGWSLAEGQFGWLLLIVFTTLMITGPGNWRPGRTPVRGYRYGAG
>CP026377.1|AUX94479.1|3487365_3489240_+|amidohydrolase
MVSPGKAELIFINGRLHTVDRENPVAEAAAIRDGKFLAVGSVAEAMQYHEEGTKVVDLQGHTAIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQALRTPSPQWVRVVGGWTEFQFAERRMPTLDEINQAAPDTPVFILHLYDRALLNRAALKVVGYTKDTPNPPGGEIQRDSNGNPTGMLIARPNAMILYATLAKGPKLPLEQQVNSTRQFMRELNRLGLTSAIDAGGGFQNYPEDYEVIAELHEKKQMTLRIAYNLFTQRPGHELEDFEKWTDMLSPGQGSDFFRHNGAGEMLVFSAADFEDFLEPRPDLAPGMEDELERVVRHLVEHRWPFRLHATYNESISRMLDVFERVNRDIPFDGLHWFFDHAETVTQANIDRIKALGGGIAVQHRMAFQGEYFAERYGIEATRHTPPVARMLETGVPVGLGTDATRVASYNPWTALYWLVSGRTVGGMQMYDVNARLDRDTALMLWTQGSAWFSSEQGKKGQLKVGQLADLAVLSKDYFRVPEEEIKGIEAVLTVVNGDIVYAAGAFGAEAPPAIPVLPEWSPVVQVPGHYRSAPPQASRVGMMPAAHHCSGPCGVHSHQHDTARHASVPVSDDNAFWGALGCSCFAF
>CP026377.1|AUX94478.1|3486329_3487019_-|hydrolase
MTNAKLEVLTPQNSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKVFNIPTTLTTVETESFSGNTFPELLDVFPEHDILERTSMNSWDDQKVRDALAKNGRKKVVVAGLWTEVCNNTFALCAMLEGDYEIYMVADASGGTSKEAHDFSMQRMIQAGVVPVTWQQVLLEWQRDWAHKATYDAVMDIVKEHSGAYGMGVDYAYTMVHKAPARAKGAHRTLAPVPANK
>CP026377.1|AUX94477.1|3486051_3486270_-|XapX-domain-containing-protein
MIAGVIALGAGLIIGLLYALLKVRSPAPPAIALIGLLGMLAGEQAVQALKTPPEAHAAQSRDASASRYTRTG
>CP026377.1|AUX94487.1|3496296_3496689_-|hypothetical-protein
MPVYDELTQYILDQIAPLGRFAVRRMFGCTALFHDGLMVLLIDPAGRLFLKTDADSLSRFTAAGCEPFTYTRRGADGTMKAVALSFYTLPDALLEDQEALIAWVRSAIDAAKRADHGKKRAARPPRPAAG
>CP026377.1|AUX94488.1|3496766_3498974_-|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE
MVFSNSNREGRIAGSASGKQAALLLTPLAALVAVALHAPAVHAADAAKEQTLVVEAADDSADNTQASDYSVPVTQAGAKMTLTAREIPQSVSIISKQRMQDQQLQTLGDVLKNSTGVSESVADFDRSTFYSRGFLIDNYMVDGIPTVFEERWNLGDSAADTAIYDRIEVVRGATGLMTGTGNPSAAINMVRKHADSREFVGNVSASYGSWDKQRYVLDLSAPLTDSGNVRGRLIAGYQDNDSYIDRYSANKKFIYGVVDADLTDSTTLSVGYDYQETNADSPPWGGLPRWYIDHSKTDYDRSVSTAPDWAYSDKQSRKVFATLTQRFDSGWQFTLNGTHTETELDSKMLYIDGFFDKNSGIGVSAYPDYPVVGGTGYNTGKRKVHALDAFASGPYELFGRQHELMAGVSYSRQHNLYMSSFANLSADEVGNFNNWNGSFPETDWGPLSLAQEDTIHQKSAYTATRLSLADPLHLILGARYTQWSASTLTQNVEKNRITPYAGLIYDINDAWSAYASYTSIFNPQTYRDINGSYLAPVTGKNYEAGLKADWLNSRVTTSVSVFRIEQDNVGQSSNLFIPGTQESAYVAAHGTVSKGVEFEINGAVTDDLQMTLGATRYMAEDGDGIAINPTQPRTSVKLFAAWTPPALRDLTVGGGVNWQNKVWQNVSAPEGNGSWHAEQGSYALVNLFGRYQVTKQLSLQANLNNLLDKKYDTSVSQYVVYGAPRNVTVTANYSF
>CP026377.1|AUX94489.1|3499756_3500221_-|DUF1456-domain-containing-protein
MMNNDVLRSLRYMLKLNNNEMVAILALAETSVSAEQVASYVLKEEDEGFVACPDVVMSCFLNGLIYHRRGKDESMPPLKTERRINNNIILKKLRVAFALKTDDILEILTAQQFRISMSEITAMMRAPEHKNYRECGDQFLRNFLRGLTARLRPA
>CP026377.1|AUX94490.1|3500292_3501021_-|two-component-system-response-regulator-YehT
MLRVLIVDDEPLARENLRVLLEQAEDIAIVGECANAVEALGAVHRLRPEVLFLDIQMPRISGLELAGMLDAAQRPHIVFLTAFEEYAVRAFEEHAFDYLLKPVEKGRLAKTLARLRHARGEQDVARLTENQPPLTFIPCSGHSRIWLLQMTEVACVSSRLSGVFVTSVDGAEGFTELTLRTLEQRTPLTRCHRQYLVNMAHLKEIRFLENGQAELLLRGGQKVPVSRRYLKSLKAALGLKSA
>CP026377.1|AUX94491.1|3501014_3502703_-|sensor-histidine-kinase
MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKFLCYVVFSVFCLLGTWFGLHVSDSIANTRAVGAVMGGLLGGPLVGGLVGLTGGLHRYSLGGMTAVSCMVSTIVEGLLGGLAHRLLIQRGRSRQVFHPLTAAMVTLAAEMVQMAIILLLARPYDEALKLVSSIAAPMMVTNTLGAALFMRILLDKRAMLEKYSSAFSATALKVAASTEGILRQGFNQENSMKVAQVLYRELEIGAVAITDREQLLAFTGIGGDHHLPGRPISSLWTRRAIERGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVIGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQIMAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTLMAVIRRDSEQAGQLVQYLSTFFRKNLKRPSEVVTLADEIEHVNAYLQIEQARFQARLQVTLSVPEALAQARLPAFTLQPIVENAIKHGTSQLLGIGEIRLSASRQQDRLVLEITDNAGLYQQKSGAGGLGMSLVDKRLRARFGDECGISVRCEPERFTCVILRLPLEEKLC
>CP026377.1|AUX94492.1|3502855_3503287_-|OsmC-family-peroxiredoxin
MTIHKKGQAHWEGDLKRGKGTISTESGALDQQPYGFNTRFEDKAGTNPEELIGAAHAACFSMALSMMLGQAGHTPQSIDTTADVSLDKQGEGFAITKIALDSAIKLPGIDSAAFDEIINKAKAGCPVSQVLNAEITLNYRLEN
>CP026377.1|AUX94493.1|3503449_3503629_+|DUF2158-domain-containing-protein
MFQKDDVVQAKTGGPKMQVVRVEGETLWCARVDDADKKEIEVPASSVNPYHEDGDFGVC
>CP026377.1|AUX94494.1|3503719_3504268_+|spermidine-acetyltransferase
MSVKLRPLEREDLHFVHQLDNNASVMRYWFEEPYEAFVELSDLYNKHIHDQSERRFVVENDGEKVGLVELVEINHVHRRAEFQIIIDPTHQGKGLASQAARLAMDYGFSVLNLYKLYLIVDQENEKAIHIYSKLGFEIEGVLRHEFFINGEYRNTIRMCIFQHQYLEKHKAHTGAMVKPTAQ
>CP026377.1|AUX94495.1|3504302_3504725_-|hypothetical-protein
MKRLLLALAAASLLSGCATIVGSETQSVRIDSIPQGATFVVQDETGRPVAEGVTPKTVELAKSNGSYFGKKSYLVMLERPGYVPLTLRLKEKANLWYILGNIPLGGFPGWLLVDPFYGGMYNIEPANVQPVINRVGARAG
>CP026377.1|AUX94496.1|3504816_3505755_-|homocysteine-S-methyltransferase
MLFDPIADLLQRHDTLILDGALATELEARGCQLADALWSAKVLLENPQLIYQVHYDYFAAGAQCAITASYQATPQGFAARGLNEAQSCALIARSVELAQQARQDYLTTHPQAAPLLVAGSVGPYGAFLANGAEYRGDYALPQDDMMAFHRPRIAALAAAGVDLLACETLPSYAELEALLALLAAEYPTLPAWFSFTLRDSEHLSDGTPLAEAAALLARCPQAVALGVNCIALEKVTPALTALRRLTHKPLLVYPNSGEQYDAVSKSWHSAPAGCGLQDKLAEWRAAGAQIIGGCCRTTPQDIAALAHGCRTH

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Crispr_ID: CP026377_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_9

3499346-3499454

Orphan

Consensus_repeat	Method
ACGGCGATGATAGCGGCCGTAAAAAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_9

>merge|CP026377|9|3499346-3499454|CRISPRCasFinder
ACGGCGATGATAGCGGCCGTAAAAAAGTGGATAACGTCACAGCGGCGATGATAGCGGCCGTGAAAAAGCGGATAACGCCGCGACGGCGATGATAGCGGCCGTGAAAAAG

>CP026377|9|9|3499346-3499454|CRISPRCasFinder
ACGGCGATGATAGCGGCCGTAAAAAAG	TGGATAACGTCACAGCGGCGATGATAGCGGCCGTGAAAAAGCGGATAACGCCGCG
ACGGCGATGATAGCGGCCGTGAAAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX94489.1\|3499756_3500221_-\|DUF1456-domain-containing-protein	unknown	unknown	gnl\|CDD\|227144
CP026377.1\|AUX94479.1\|3487365_3489240_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|224490
CP026377.1\|AUX94490.1\|3500292_3501021_-\|two-component-system-response-regulator-YehT	unknown	unknown	gnl\|CDD\|236956
CP026377.1\|AUX94483.1\|3493037_3493919_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
CP026377.1\|AUX94497.1\|3505744_3507154_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236904
CP026377.1\|AUX94491.1\|3501014_3502703_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814
CP026377.1\|AUX94484.1\|3494281_3494644_-\|NUDIX-hydrolase	unknown	unknown	unknown
CP026377.1\|AUX94481.1\|3491324_3492146_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP026377.1\|AUX94493.1\|3503449_3503629_+\|DUF2158-domain-containing-protein	unknown	unknown	unknown
CP026377.1\|AUX94485.1\|3494651_3495269_-\|GDP-mannose-pyrophosphatase-NudK	unknown	unknown	gnl\|CDD\|184971
CP026377.1\|AUX94496.1\|3504816_3505755_-\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|181899
CP026377.1\|AUX94482.1\|3492190_3492916_-\|quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|380375
CP026377.1\|AUX94494.1\|3503719_3504268_+\|spermidine-acetyltransferase	unknown	unknown	gnl\|CDD\|237916
CP026377.1\|AUX94488.1\|3496766_3498974_-\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	unknown	unknown	gnl\|CDD\|236640
CP026377.1\|AUX94495.1\|3504302_3504725_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX94498.1\|3507337_3507673_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182545
CP026377.1\|AUX94480.1\|3489245_3489668_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|311556
CP026377.1\|AUX94492.1\|3502855_3503287_-\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|274650
CP026377.1\|AUX94487.1\|3496296_3496689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377438
CP026377.1\|AUX94486.1\|3495355_3496111_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX94489.1\|3499756_3500221_-\|DUF1456-domain-containing-protein	gnl\|CDD\|227144	COG4807, COG4807, Uncharacterized protein conserved in bacteria [Function unknown].	8.58435e-80
CP026377.1\|AUX94479.1\|3487365_3489240_+\|amidohydrolase	gnl\|CDD\|224490	COG1574, COG1574, Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only].	0
CP026377.1\|AUX94490.1\|3500292_3501021_-\|two-component-system-response-regulator-YehT	gnl\|CDD\|236956	PRK11697, PRK11697, two-component system response regulator BtsR.	2.07363e-154
CP026377.1\|AUX94483.1\|3493037_3493919_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.99446e-89
CP026377.1\|AUX94491.1\|3501014_3502703_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0
CP026377.1\|AUX94497.1\|3505744_3507154_-\|amino-acid-permease	gnl\|CDD\|236904	PRK11387, PRK11387, S-methylmethionine permease.	0
CP026377.1\|AUX94481.1\|3491324_3492146_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.47778e-42
CP026377.1\|AUX94485.1\|3494651_3495269_-\|GDP-mannose-pyrophosphatase-NudK	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	2.74162e-78
CP026377.1\|AUX94496.1\|3504816_3505755_-\|homocysteine-S-methyltransferase	gnl\|CDD\|181899	PRK09485, mmuM, homocysteine methyltransferase; Provisional.	5.0228e-180
CP026377.1\|AUX94482.1\|3492190_3492916_-\|quercetin-2,3-dioxygenase	gnl\|CDD\|380375	cd02910, cupin_Yhhw_N, Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, N-terminal cupin domain. This family includes the N-terminal cupin domains of YhhW and YhaK, Escherichia coli pirin-like proteins with unknown function. YhhW is structurally similar not only to human pirin but also to quercitin 2,3-dioxygenase (quercitinase). Although the function of YhhW is not completely understood, YhhW and its human ortholog have quercitinase activity and are likely to play an important role in transcription and apoptosis. This N-terminal cupin domain of YhhW has a metal coordination site and is thought to have catalytic activity while the C-terminal cupin-like domain has diverged considerably and has closer alignment with C-terminal pirin. YhaK is found in low abundance in the cytosol of E. coli and is strongly up-regulated by nitroso-glutathione (GSNO). There are major structural differences at the N-terminus of YhaK compared with YhhW; YhaK lacks the canonical cupin metal-binding residues of pirins and may be involved in chloride binding and/or sensing of oxidative stress in enterobacteria. YhaK showed no quercetinase and peroxidase activity; however, reduced YhaK was very sensitive to reactive oxygen species (ROS). Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold.	4.93687e-72
CP026377.1\|AUX94494.1\|3503719_3504268_+\|spermidine-acetyltransferase	gnl\|CDD\|237916	PRK15130, PRK15130, spermidine N1-acetyltransferase; Provisional.	5.18474e-131
CP026377.1\|AUX94488.1\|3496766_3498974_-\|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE	gnl\|CDD\|236640	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional.	0
CP026377.1\|AUX94498.1\|3507337_3507673_-\|hypothetical-protein	gnl\|CDD\|182545	PRK10556, PRK10556, hypothetical protein; Provisional.	1.79279e-76
CP026377.1\|AUX94480.1\|3489245_3489668_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|311556	pfam07681, DoxX, DoxX. These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.	8.43818e-09
CP026377.1\|AUX94492.1\|3502855_3503287_-\|OsmC-family-peroxiredoxin	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	2.20568e-82
CP026377.1\|AUX94487.1\|3496296_3496689_-\|hypothetical-protein	gnl\|CDD\|377438	pfam04993, TfoX_N, TfoX N-terminal domain. TfoX may play a key role in the development of genetic competence by regulating the expression of late competence-specific genes. This family corresponds to the N-terminal presumed domain of TfoX. The domain is found as an isolated domain in some proteins suggesting this is an autonomous domain.	1.88678e-30
CP026377.1\|AUX94486.1\|3495355_3496111_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.00332e-73

>CP026377.1|AUX94488.1|3496766_3498974_-|ferric-rhodotorulic-acid/ferric-coprogen-receptor-FhuE
MVFSNSNREGRIAGSASGKQAALLLTPLAALVAVALHAPAVHAADAAKEQTLVVEAADDSADNTQASDYSVPVTQAGAKMTLTAREIPQSVSIISKQRMQDQQLQTLGDVLKNSTGVSESVADFDRSTFYSRGFLIDNYMVDGIPTVFEERWNLGDSAADTAIYDRIEVVRGATGLMTGTGNPSAAINMVRKHADSREFVGNVSASYGSWDKQRYVLDLSAPLTDSGNVRGRLIAGYQDNDSYIDRYSANKKFIYGVVDADLTDSTTLSVGYDYQETNADSPPWGGLPRWYIDHSKTDYDRSVSTAPDWAYSDKQSRKVFATLTQRFDSGWQFTLNGTHTETELDSKMLYIDGFFDKNSGIGVSAYPDYPVVGGTGYNTGKRKVHALDAFASGPYELFGRQHELMAGVSYSRQHNLYMSSFANLSADEVGNFNNWNGSFPETDWGPLSLAQEDTIHQKSAYTATRLSLADPLHLILGARYTQWSASTLTQNVEKNRITPYAGLIYDINDAWSAYASYTSIFNPQTYRDINGSYLAPVTGKNYEAGLKADWLNSRVTTSVSVFRIEQDNVGQSSNLFIPGTQESAYVAAHGTVSKGVEFEINGAVTDDLQMTLGATRYMAEDGDGIAINPTQPRTSVKLFAAWTPPALRDLTVGGGVNWQNKVWQNVSAPEGNGSWHAEQGSYALVNLFGRYQVTKQLSLQANLNNLLDKKYDTSVSQYVVYGAPRNVTVTANYSF
>CP026377.1|AUX94487.1|3496296_3496689_-|hypothetical-protein
MPVYDELTQYILDQIAPLGRFAVRRMFGCTALFHDGLMVLLIDPAGRLFLKTDADSLSRFTAAGCEPFTYTRRGADGTMKAVALSFYTLPDALLEDQEALIAWVRSAIDAAKRADHGKKRAARPPRPAAG
>CP026377.1|AUX94486.1|3495355_3496111_+|DeoR-family-transcriptional-regulator
MLTSQRKQLILQKLAAEGQVLSKMLSEEFNVSEDTIRRDLRELSAEGRLQRVHGGALPASAATVTFSERKNLRLDAKRAIAKRAAALIEPGQVVMIDGGTTTAELITFLPHSLQLTVVTHSPSIALGLADHPLIEVIMIGGRLFRHSLVAVGAAAIENVSRVRADIFFMGVTGIHAEAGLSTGDYEESCIKRAFAGRAAETVVMASPEKINAASAWVIGDLGLINTMVVEGDTEAHLLTPFSTKGITVIKA
>CP026377.1|AUX94485.1|3494651_3495269_-|GDP-mannose-pyrophosphatase-NudK
MPVKHAETGSLTAHRQAEVRIVESKTLSDDWYVLKKYTFDFRRRDGEWQRQSREVYDRGNGATLLLYNREKQSVILTRQFRFPLYVNHHSGFLLEAPAGLLDNLDPEECIRAEAEEETGYQVGQVQKVFEAFMSPGSVTEKLYFFIAEYQPDDRFSDGGGVKEEGEDIEVLEVHFQTALQAIRDGDIVDAKTIMLLHYLALNGIL
>CP026377.1|AUX94484.1|3494281_3494644_-|NUDIX-hydrolase
MNAELILIAGPYRSGTHGDETLIAQNLRRLEQAAWEVYQRGHVPVIGEWLALPLAKAAGSQRLDDEISESLLYPVAHRLIGKCDAIYRIGGASQGADKDIAVAQQHGLKIYRSAEEIAWL
>CP026377.1|AUX94483.1|3493037_3493919_+|LysR-family-transcriptional-regulator
MQIEDLRIFVAVVKAGSFTAAAEQLFLSKQYVSRRMAALEASLNARLLMRNTRRLSVTEAGLVFSQHAQRILDDIHEAERAVSANRQALHGVFRVSMPMSFGMSHLSPLIVRFMQQHPAVQIQTELADRYVDVIGEGFDMAIRIGKLADSTLIARRLGALKRVICASPDYLARTGTPRAPEDLLQHQCLRYGREGQNGWELQRAGKSALFEVRGPAISNNGELLRDAAVAGMGLVLLPEFIVAPAVARGALTTVLDDYWPAPLGLYAVYPQHRQRSEINRAFLDFLEAELKLG
>CP026377.1|AUX94482.1|3492190_3492916_-|quercetin-2,3-dioxygenase
MIERRLSEQRGLGNHGWLHSRHTFSFANYWDPKQTGFSDLLVINDDQVAPGRGFGSHAHSNMEIISYVLERALAHKDSMGTGSVIVPGDVQLMSAGSGVTHSEFNHSAQEDVHFLQIWVVPEENGTEPGYQQVSVAEAEKRGRLRLIVSPDGQQNSLRIRQDVKIYAGLFNGDEQQTFALDDSRYAYIHVARGSITVNGTLFKAGDGARVRDEDTLIFSGGNDAEVLLFDLRPLEVNHPTR
>CP026377.1|AUX94481.1|3491324_3492146_+|alpha/beta-hydrolase
MTMFTTQDGTQLYYKDWGTGKPVLFSHGWPLDADMWDSQLNFLAERGYRAIAFDRRGFGRSEQPWEGYDYDTFAADINDLLTHLDLHEVTLVGFSMGGGDVTRYLSRYGSARVSALALLGAVTPIFGKADDYPQGVDLSVFEGIRDGLRNDRAQFISDFAATFYGTNAGQSVSEGVLVQTLNIALLASLKGTIDCVTAFSETDFRPDMAKIDVPTLVIHGSNDQVVPFETTGKVAAEMIRNAELKVYDNAPHGFAVTHQERLNNDLLAFLQSR
>CP026377.1|AUX94480.1|3489245_3489668_+|LysR-family-transcriptional-regulator
MKSPYPFSPRIDAGLFFLRLSGSLLLLWVHGLPKVFHFSEELTRIEDPFGFGPWMSLLPAIFAEVVCPLLIIAGVGARLACLPIIGVLLVAMLAVHPGWSLAEGQFGWLLLIVFTTLMITGPGNWRPGRTPVRGYRYGAG
>CP026377.1|AUX94479.1|3487365_3489240_+|amidohydrolase
MVSPGKAELIFINGRLHTVDRENPVAEAAAIRDGKFLAVGSVAEAMQYHEEGTKVVDLQGHTAIPGLNDSHLHLIRGGLNYNLELRWEGVPSLADALRMLKDQALRTPSPQWVRVVGGWTEFQFAERRMPTLDEINQAAPDTPVFILHLYDRALLNRAALKVVGYTKDTPNPPGGEIQRDSNGNPTGMLIARPNAMILYATLAKGPKLPLEQQVNSTRQFMRELNRLGLTSAIDAGGGFQNYPEDYEVIAELHEKKQMTLRIAYNLFTQRPGHELEDFEKWTDMLSPGQGSDFFRHNGAGEMLVFSAADFEDFLEPRPDLAPGMEDELERVVRHLVEHRWPFRLHATYNESISRMLDVFERVNRDIPFDGLHWFFDHAETVTQANIDRIKALGGGIAVQHRMAFQGEYFAERYGIEATRHTPPVARMLETGVPVGLGTDATRVASYNPWTALYWLVSGRTVGGMQMYDVNARLDRDTALMLWTQGSAWFSSEQGKKGQLKVGQLADLAVLSKDYFRVPEEEIKGIEAVLTVVNGDIVYAAGAFGAEAPPAIPVLPEWSPVVQVPGHYRSAPPQASRVGMMPAAHHCSGPCGVHSHQHDTARHASVPVSDDNAFWGALGCSCFAF
>CP026377.1|AUX94489.1|3499756_3500221_-|DUF1456-domain-containing-protein
MMNNDVLRSLRYMLKLNNNEMVAILALAETSVSAEQVASYVLKEEDEGFVACPDVVMSCFLNGLIYHRRGKDESMPPLKTERRINNNIILKKLRVAFALKTDDILEILTAQQFRISMSEITAMMRAPEHKNYRECGDQFLRNFLRGLTARLRPA
>CP026377.1|AUX94490.1|3500292_3501021_-|two-component-system-response-regulator-YehT
MLRVLIVDDEPLARENLRVLLEQAEDIAIVGECANAVEALGAVHRLRPEVLFLDIQMPRISGLELAGMLDAAQRPHIVFLTAFEEYAVRAFEEHAFDYLLKPVEKGRLAKTLARLRHARGEQDVARLTENQPPLTFIPCSGHSRIWLLQMTEVACVSSRLSGVFVTSVDGAEGFTELTLRTLEQRTPLTRCHRQYLVNMAHLKEIRFLENGQAELLLRGGQKVPVSRRYLKSLKAALGLKSA
>CP026377.1|AUX94491.1|3501014_3502703_-|sensor-histidine-kinase
MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKFLCYVVFSVFCLLGTWFGLHVSDSIANTRAVGAVMGGLLGGPLVGGLVGLTGGLHRYSLGGMTAVSCMVSTIVEGLLGGLAHRLLIQRGRSRQVFHPLTAAMVTLAAEMVQMAIILLLARPYDEALKLVSSIAAPMMVTNTLGAALFMRILLDKRAMLEKYSSAFSATALKVAASTEGILRQGFNQENSMKVAQVLYRELEIGAVAITDREQLLAFTGIGGDHHLPGRPISSLWTRRAIERGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVIGTIKLYEAKNRLFSSINRTLGEGIAQLLSAQIMAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTLMAVIRRDSEQAGQLVQYLSTFFRKNLKRPSEVVTLADEIEHVNAYLQIEQARFQARLQVTLSVPEALAQARLPAFTLQPIVENAIKHGTSQLLGIGEIRLSASRQQDRLVLEITDNAGLYQQKSGAGGLGMSLVDKRLRARFGDECGISVRCEPERFTCVILRLPLEEKLC
>CP026377.1|AUX94492.1|3502855_3503287_-|OsmC-family-peroxiredoxin
MTIHKKGQAHWEGDLKRGKGTISTESGALDQQPYGFNTRFEDKAGTNPEELIGAAHAACFSMALSMMLGQAGHTPQSIDTTADVSLDKQGEGFAITKIALDSAIKLPGIDSAAFDEIINKAKAGCPVSQVLNAEITLNYRLEN
>CP026377.1|AUX94493.1|3503449_3503629_+|DUF2158-domain-containing-protein
MFQKDDVVQAKTGGPKMQVVRVEGETLWCARVDDADKKEIEVPASSVNPYHEDGDFGVC
>CP026377.1|AUX94494.1|3503719_3504268_+|spermidine-acetyltransferase
MSVKLRPLEREDLHFVHQLDNNASVMRYWFEEPYEAFVELSDLYNKHIHDQSERRFVVENDGEKVGLVELVEINHVHRRAEFQIIIDPTHQGKGLASQAARLAMDYGFSVLNLYKLYLIVDQENEKAIHIYSKLGFEIEGVLRHEFFINGEYRNTIRMCIFQHQYLEKHKAHTGAMVKPTAQ
>CP026377.1|AUX94495.1|3504302_3504725_-|hypothetical-protein
MKRLLLALAAASLLSGCATIVGSETQSVRIDSIPQGATFVVQDETGRPVAEGVTPKTVELAKSNGSYFGKKSYLVMLERPGYVPLTLRLKEKANLWYILGNIPLGGFPGWLLVDPFYGGMYNIEPANVQPVINRVGARAG
>CP026377.1|AUX94496.1|3504816_3505755_-|homocysteine-S-methyltransferase
MLFDPIADLLQRHDTLILDGALATELEARGCQLADALWSAKVLLENPQLIYQVHYDYFAAGAQCAITASYQATPQGFAARGLNEAQSCALIARSVELAQQARQDYLTTHPQAAPLLVAGSVGPYGAFLANGAEYRGDYALPQDDMMAFHRPRIAALAAAGVDLLACETLPSYAELEALLALLAAEYPTLPAWFSFTLRDSEHLSDGTPLAEAAALLARCPQAVALGVNCIALEKVTPALTALRRLTHKPLLVYPNSGEQYDAVSKSWHSAPAGCGLQDKLAEWRAAGAQIIGGCCRTTPQDIAALAHGCRTH
>CP026377.1|AUX94497.1|3505744_3507154_-|amino-acid-permease
MQSEQPQGGQFKRSMKARHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVWLVMQSLGELSVAMPETGAFHVYASRYLSPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQTPVWLWCLIFCLAIFLLNVISTRFFAEGEFWFSLIKVITILAFIVLGGCAVFGLIPLKDGTPAPFFHNLTASGWLPHGALPILMTMVAVNFAFSGTELIGIAAGETENPHKVVPMAIRTTVARLIIFFIGTVLILAALIPMDQAGIVKSPFVLVFEKIGIPWAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLPRCFSRLTRRGIPLVAIGASMLGGLLALFSSIVAADTVYVALSAISGFAVVAVWLSICASHYAFRRRYLREGGTLDGLKYRAPWFPLTPILGFALCLLACVGLAFDPAQRIALWCGLPFVALCYGAYSLTQRNKRERAKETEHAV
>CP026377.1|AUX94498.1|3507337_3507673_-|hypothetical-protein
MYLRPDEVARVLEKAGFEMDTVTPKTYGYRRGEDYVYVNREARMGRTALVIHPTLKEKSLNYADPASEIKTCDHYTRFPMYLMGDSQDHYGIPHGFSSRAALERYLQSMFD

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Crispr_ID: CP026377_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026377_10

3543410-3543499

Orphan

Consensus_repeat	Method
GCAGCGGCGCAGCCTGGGCGGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026377_10

>merge|CP026377|10|3543410-3543499|CRISPRCasFinder
GCAGCGGCGCAGCCTGGGCGGGCTGGCGCTCCCCCCTTGATGCTCTCTTTCCTTGCCTGACCTACACGCAGCGGCGCAGCCTGGTCGGGC

>CP026377|10|10|3543410-3543499|CRISPRCasFinder
GCAGCGGCGCAGCCTGGGCGGGC	TGGCGCTCCCCCCTTGATGCTCTCTTTCCTTGCCTGACCTACAC
GCAGCGGCGCAGCCTGGTCGGGC

Protein	Signature genes	Signature genes Name	Protein_function
CP026377.1\|AUX94522.1\|3540562_3541294_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|182792
CP026377.1\|AUX94534.1\|3551440_3552229_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226621
CP026377.1\|AUX94533.1\|3549912_3551274_-\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
CP026377.1\|AUX94523.1\|3541578_3541911_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|182378
CP026377.1\|AUX94521.1\|3539449_3540430_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
CP026377.1\|AUX94531.1\|3548952_3549501_-\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
CP026377.1\|AUX94515.1\|3527036_3528392_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|236510
CP026377.1\|AUX94520.1\|3538721_3539453_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
CP026377.1\|AUX94517.1\|3528760_3530062_-\|alpha-ketoglutarate-transporter	unknown	unknown	gnl\|CDD\|182433
CP026377.1\|AUX94518.1\|3535775_3535985_-\|hypothetical-protein	unknown	unknown	unknown
CP026377.1\|AUX94527.1\|3545662_3546742_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
CP026377.1\|AUX94516.1\|3528438_3528759_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182705
CP026377.1\|AUX94524.1\|3542188_3543349_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	unknown	unknown	gnl\|CDD\|182594
CP026377.1\|AUX94528.1\|3547096_3547636_+\|ribosomal-protein-serine-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP026377.1\|AUX94519.1\|3536022_3538596_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|182791
CP026377.1\|AUX94525.1\|3543719_3544484_+\|3-oxoacyl-ACP-reductase	unknown	unknown	gnl\|CDD\|212491
CP026377.1\|AUX94532.1\|3549519_3549768_-\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
CP026377.1\|AUX94529.1\|3547762_3548110_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP026377.1\|AUX94526.1\|3544534_3545656_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|183035
CP026377.1\|AUX94530.1\|3548152_3548956_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581

Protein	Function_ID	Function_description	E-value
CP026377.1\|AUX94522.1\|3540562_3541294_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|182792	PRK10866, PRK10866, outer membrane protein assembly factor BamD.	2.88108e-176
CP026377.1\|AUX94534.1\|3551440_3552229_+\|hypothetical-protein	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	9.86964e-105
CP026377.1\|AUX94533.1\|3549912_3551274_-\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
CP026377.1\|AUX94523.1\|3541578_3541911_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|182378	PRK10324, PRK10324, ribosome-associated translation inhibitor RaiA.	6.23914e-54
CP026377.1\|AUX94526.1\|3544534_3545656_-\|bifunctional-chorismate-mutase/prephenate-dehydrogenase	gnl\|CDD\|183035	PRK11199, tyrA, bifunctional chorismate mutase/prephenate dehydrogenase; Provisional.	0
CP026377.1\|AUX94531.1\|3548952_3549501_-\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	4.28125e-85
CP026377.1\|AUX94515.1\|3527036_3528392_+\|CDP-diacylglycerol--serine-O-phosphatidyltransferase	gnl\|CDD\|236510	PRK09428, pssA, CDP-diacylglycerol--serine O-phosphatidyltransferase.	0
CP026377.1\|AUX94520.1\|3538721_3539453_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	2.01049e-156
CP026377.1\|AUX94517.1\|3528760_3530062_-\|alpha-ketoglutarate-transporter	gnl\|CDD\|182433	PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional.	0
CP026377.1\|AUX94529.1\|3547762_3548110_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.20723e-69
CP026377.1\|AUX94527.1\|3545662_3546742_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
CP026377.1\|AUX94516.1\|3528438_3528759_+\|hypothetical-protein	gnl\|CDD\|182705	PRK10759, PRK10759, YfiM family lipoprotein.	9.18898e-48
CP026377.1\|AUX94524.1\|3542188_3543349_+\|bifunctional-chorismate-mutase/prephenate-dehydratase	gnl\|CDD\|182594	PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional.	0
CP026377.1\|AUX94528.1\|3547096_3547636_+\|ribosomal-protein-serine-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	4.66476e-17
CP026377.1\|AUX94519.1\|3536022_3538596_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|182791	PRK10865, PRK10865, ATP-dependent chaperone ClpB.	0
CP026377.1\|AUX94525.1\|3543719_3544484_+\|3-oxoacyl-ACP-reductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.53639e-86
CP026377.1\|AUX94532.1\|3549519_3549768_-\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	9.38374e-44
CP026377.1\|AUX94521.1\|3539449_3540430_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	0
CP026377.1\|AUX94530.1\|3548152_3548956_-\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	6.82125e-169

>CP026377.1|AUX94524.1|3542188_3543349_+|bifunctional-chorismate-mutase/prephenate-dehydratase
MTSENPLLALRDKISAIDEQLLGLLSERRALAIEVAKAKMATHRPIRDIDRERDLLERLIALGHAHQLDAHFITRLFQLIIEDSVLTQQALLQKHLNQTDRQSARIAFLGPKGSYSHLAARKYGARHFANVIESGCLKFHDIIQEVESGRADYAVLPIENTSSGSINEVYDLLQQTSLSIVGEMTVPIDHCVLVSGTTDLQQIETVYSHPQPFQQCSQFINRFPHWKIEYTESTAAAMEKVAALNSPKAAALGNEAGGALYHLQVLERNLANQQQNITRFIILARKPVDVSEQVPAKTTLIMATGQQAGALVDALLVLRQHNLIMSKLESRPINGNPWEEMFYLDVQGNLRTPQMQQALQELRAMTRSLKVLGCYPGENVVPVDPQ
>CP026377.1|AUX94523.1|3541578_3541911_+|ribosomal-subunit-interface-protein
MIVNITSKQIEITPAIRQHVEDRLSKLEKWQTHLINPHIVLSREPKEYAADATINTPNGPLIASATHEDMYAAINELINKLERQLNKVQHKGEARRAAVSVKDLTPESEE
>CP026377.1|AUX94522.1|3540562_3541294_+|outer-membrane-protein-assembly-factor-BamD
MTRMKYLVAAATLSLALAGCSSSKDQVPDSPPSELYATAQQKLQDGNFKGAITQLEALDNRYPFGPYAQQVQLDLIYAYYKNADLPMAQAAIDRFMRLNPTHPNIDYVLYMKGLTDMALDDSALQGFFGIDRSDRDPEHARAAFRDFSQLLRTYPNSQYATDARKRLVYLKDRLAKYELSVAQFYTKREAYVAVVNRVEQMLKDYPDTQATRTALPLMENAYRKLQLNAEADKVAKIIAANQA
>CP026377.1|AUX94521.1|3539449_3540430_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MAQQVKLTATVAESQLGQRLDQALAELFPDYSRSRIKEWILGGQVSVNGKTVDKPKEKVLGGEAVAIQAEIEEEMRWEAQDIPLNIVYEDEHILVINKPRDLVVHPGAGNPDGTVLNALLHYYPAISDVPRAGIVHRLDKDTTGLMVVAKTVPAQTHLVESLQLREITREYEAVAIGNMTAGGIVDEPISRHSTKRTHMAVHPMGKHAVTHYRVMEHFRAHTRLRLRLETGRTHQIRVHMSHINHPLVGDPLYGGRPRPPKGASDAFIATLRGFDRQALHATMLRLYHPVTGIEMEWHAPLPQDMVDLIDALKADTEAFKDQLDWL
>CP026377.1|AUX94520.1|3538721_3539453_-|peptidoglycan-editing-factor-PgeF
MSDLIVPDWPAPASVRACSTTRAGGVSAAPWDSLNLGDHVGDRPEDVLANRTRLQKMAALPAMPYWLEQVHGTDVVRLDGQPTAMRRADAVWSNQPGAVCAVMTADCLPVLFCSFDGKEIAAAHAGWRGLCAGVLENTLRQFSAPAEAIHVWLGPAIGPDAFEVGPEVRDAFMAHDPAAQHAFRASGAKFYADLWLLARQRLTTQGVTSISGGGRCTWQESAQFFSWRRSGTTGRMASLIWLI
>CP026377.1|AUX94519.1|3536022_3538596_-|ATP-dependent-chaperone-ClpB
MRLDRLTNKFQLALADAQSLALGRDNQFIEPLHLMSALLSQEGGTVRPLLTTAGVDVAGLRNGVDQAISRLPQVEGADGDVQPSADLVRVLNLCDKLAQKRGDNFISSELFVLAALDSRGSLADLLKSAGATNDKLTKAIEQMRGGENVNDQGAEDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLSKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPGVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRLQIDSKPEPLDRLERRVIQLKLEQQALKKESDEASQKRLEMLEDELGQKEREYAELEEEWKAEKASLSGTQTIKADLEQAKIALEQARRSGDLGRMSELQYGKIPELEKQLAAATQSEGKTMRLLRNRVTDVEIADVLARWTGIPVARMMEGEREKLLRMEQDLHQRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFLFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYGAMKDVVMTVVGHHFRPEFINRIDEVVVFHPLGEQHIASIANIQLQRLYKRLEDRGYAVQMSEEALKLLGQNGYDPVYGARPLKRAIQQQVENPLAQQILSGALVPGKTVQIDVRDGIIVAHQ
>CP026377.1|AUX94518.1|3535775_3535985_-|hypothetical-protein
MPFRGGFARFSGIASEISANGKKVEISTCQPGRTPYNAPPSTRHNGLRHAVLSGSAKSESPEKNFLKRG
>CP026377.1|AUX94517.1|3528760_3530062_-|alpha-ketoglutarate-transporter
MADVVTNNKRPDVAKTSEKKRIGAIIGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNPTTQLVQTAGVFAAGFLMRPIGGWLFGRIGDRHGRKTSMLISVCMMCFGSLMIACLPGYDTLGIWAPILLLLARLFQGLSVGGEYGTSATYMSEVAIEGRKGYYASFQYVTLIGGQLLALLTVVVLQQLMPHEALRSWGWRIPFALGAVLAIVALFLRRSLDETTSDKTRQHQDAGRLRGLWKHRRAFLMVLGFTAGGSLSFYTFTTYMQKYLVNSAGMDAKTASGLMTLALFVFMLIQPLIGALSDKIGRRSSMLIFSVGAMFCTVPILTLLQRAESGWVVFLLVMLALLITSFYTAISGIVKAEMFPPEVRAMGVGLSYAVANAIFGGSAEYVALSLKAAGHETHFFWYVSLMGAVALLVSLMLHRKGQGMRL
>CP026377.1|AUX94516.1|3528438_3528759_+|hypothetical-protein
MRTLLLLLCLCCAGCSHTAQDRWTGRDKAQHFIVSAALSAAGNEYGQQQGWRPRHSNSFGLMFAFSLGAAKELYDSRSAGSGWSWKDLGWDIAGAATGFALWNLGQ
>CP026377.1|AUX94515.1|3527036_3528392_+|CDP-diacylglycerol--serine-O-phosphatidyltransferase
MLSKFKRNKHQQHLAQLPKLSQSVADVTTLYSPSEFRATLLEKIASATQRICIVALYLENDDAGRAVLSALYAAKRARPTLDISILVDWHRAQRGRIGDAKGVTNADWYCEMASQHPDIAIPVYGIPVNTREALGVLHLKGFIIDDTLLYSGASLNDVYLHQHDKYRYDRYQLIRNPQLADTMFEWIERNLKQADAVHRLDQHERPKSPEIKNETRQFRQDLRGFDYHFTANANNEELAVTPLVGLGKRSLLNKTIYHLMPCTERKLTLCTPYFNLPAILVRNIIWLLRRGKEVEIIVGDKTANDFYIPEDQPFKIIGALPYLYEINLRRFLSRLQYYVGNGQLTVRLWKDGDNSYHLKGMWVDDEWMLITGNNLNPRAWRLDLENAVLIHDPLQQLADQRDRELALIRQHTSVVKHFRDLDSIADYPVKVRKLIRRLRRIRIDRLISRIL
>CP026377.1|AUX94525.1|3543719_3544484_+|3-oxoacyl-ACP-reductase
MERFSNKVVIVTGAGSGIGAASAQRFAEEGASVVLVGRTREKLNNTFARLKSGDHLVVVADVSKKEEVEALAEQVQQHYGRVDVLLNNAGVNTSGKIHQASDEEWRKVMSTDLDGVFYCTRAFMPALLESRGNVVNISSVSGLGGDWGMSIYNAAKGAITNLTRSLAMDYGKDGVRVNAICPGLTITDMTAEMKDNAQLMAKFNERIALGRPGEAEELAAAIAFIASDDARYITGVNLPVDGGITASNGQPPQA
>CP026377.1|AUX94526.1|3544534_3545656_-|bifunctional-chorismate-mutase/prephenate-dehydrogenase
MVAELTALRDKIDEVDKGLLELLAKRLALVAEVGEVKSRYGLPIYVPEREASMLASRRKEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPELRPIVIVGGKGRMGQLFAKMLALSGYQVKLLDKEEWPQAPALLADAGMVIVSVPIHLTEQVIAQLPPLPHDCILVDIASVKNRPLQAMLAAHSGPVLGLHPMFGPDSGSLAKQVVVWCDGRQPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLDQLLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSESNLALIKRYYQRFGEAITLLEQSDKQGFIDSFRKVEQWFGDYAPRFMRESGTLLRSANDNRV
>CP026377.1|AUX94527.1|3545662_3546742_-|3-deoxy-7-phosphoheptulonate-synthase
MQKDALNNVHIAEEQVLITPTQLKQKFPLNAQLEAQVSASRQTIADIIAGRDHRLLVVCGPCSVHDPEAALVYARQLKDLSEQLKDQLYIVMRVYFEKPRTTVGWKGLINDPYMDNSFDVEAGLHIARQLLVNLVEMGLPLATEALDPNSPQYLGDLFSWSAIGARTTESQTHREMASGLSMPVGFKNGTDGSLGTAINAMRAAAMPHRFVGINQSGQVCLLQTQGNPDGHVILRGGKAPNYSPADVEQCEKEMVKAGLRPALMIDCSHGNSNKDYRRQPGVAESAVAQIRDGNRSIIGLMLESNLNEGNQSSEQPRSAMQYGVSVTDACISWESTQQLLRAIHQDLNGVLAARASQEH
>CP026377.1|AUX94528.1|3547096_3547636_+|ribosomal-protein-serine-acetyltransferase
MEIYLRPMQASDAADYAEAVNESLAELQPWMVWAHKDYQPQEAAEWFVWLDRQREEGEANEMGIFAAEDHRFLGAAGLRYAQNPAELSAIGYWVRKREQRKGVARQAVLQLAREGFRQPGVETIEILAAENNHASRAVALSCGAHFIDLRYGLIVLKKGPVMAAIYHLRREDFLADSGR
>CP026377.1|AUX94529.1|3547762_3548110_-|50S-ribosomal-protein-L19
MSNIIKQLEQEQMKQDVPSFRPGDSVEVKVWVVEGSKKRLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSITVKRRGAVRKAKLYYLRERTGKAARIKERLG
>CP026377.1|AUX94530.1|3548152_3548956_-|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MTSEQNGNTTARAMWIGVISLFPEMFRAITDYGVTGRAVKNGLLSVQSWSPRDFTHDRHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQNGVCELATQQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVLGKQASADEDSFSEGLLDCPHYTRPEVLEGLEVPSVLLSGNHAEIRRWRLKQSLGRTWLRRPELLENLALTEEQAKLLSEFQREFNAQQNDDAEG
>CP026377.1|AUX94531.1|3548952_3549501_-|ribosome-maturation-factor-RimM
MSKQLATQPPVNPVTLGKMGAAYGIRGWLKVFSSTEDADSIFDYQPWFIQRAGKWQQIELESWKHHNQDMIIKVKGIDDRDAAAQLTNCEILVDATQLPALEEGDYYWKDLMGCKVVTVDGYEMGKVIDLMETGSNDVLVVKANLKDAFGVKERLIPFLDEQVIKKVDLTTGTIEVDWDPGF
>CP026377.1|AUX94532.1|3549519_3549768_-|30S-ribosomal-protein-S16
MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASGQAETLRLDLDRIEHWVGQGATLSDRVNALIKEAKKAA
>CP026377.1|AUX94533.1|3549912_3551274_-|signal-recognition-particle-protein
MFDNLTDRLSQTLRNISGRGRLTEENIKETLREVRMALLEADVALPVVREFINRVKERAVGHEVNKSLTPGQEFVKIVRNELVEAMGSENHALNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAQQVGVDFCPSDLSQKPVDIVNNALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHAAINPVETLFVVDAMTGQDAANTAKAFNEALPLTGVILTKVDGDARGGAALSIRHITGKPIKFMGVGEKTEALEPFYPDRLASRILGMGDVLSLIEDIESKVDREQAEKLANKLKKGDGFDLNDFLEQLKQMRNMGGMANLMGKLPGMGQLPDNVKSQMDDKVLVRMEAMINSMTRKEREKPEIIKGSRKRRIAAGSGMQVQDVNRMLKQFDDMQRMMKKMKKGGMAKMLRGMKGMMPPGFPGR
>CP026377.1|AUX94534.1|3551440_3552229_+|hypothetical-protein
MSAFAILALFAYSFSLALIVPSLLRNSGAWRRMAVLSATLALAAHAVALQQRIFVNGGQNLSLLNIGSLVSLLICIIMTIVASRNRGWVLLPIVYSFALINLAFATFVPNAFITHLEATPGMMIHIGLALFAYATLIIAALYALQLAWIDYQLKNKRLAFSNDMPPLMTIERKMFHITQVGVVLLTLVLCTGLFYMKNLFSPENVDKAVLSILAWFVYVVLLWGHYHEGWRGRRVVWFNCGGALLLTMSYFGSRVLQHLLTH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP026377_2	2.1\|1383098\|27\|CP026377\|CRISPRCasFinder	1383098-1383124	27	CP026377.1	1383047-1383073	1	0.963

1. spacer 2.1|1383098|27|CP026377|CRISPRCasFinder matches to position: 1383047-1383073, mismatch: 1, identity: 0.963

agcgggcgtaaaggcttaaggtgacga	CRISPR spacer
agcgggcgtaaaggattaaggtgacga	Protospacer
************** ************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026377_8	8.2\|3496229\|36\|CP026377\|CRISPRCasFinder	3496229-3496264	36	MH697580	Gordonia phage Catfish, complete genome	36284-36319	10	0.722

1. spacer 8.2|3496229|36|CP026377|CRISPRCasFinder matches to MH697580 (Gordonia phage Catfish, complete genome) position: , mismatch: 10, identity: 0.722

taggcgccgttagccgacgggcgcagaccgaagtga	CRISPR spacer
cgctcgccgttctccgacgggcgcagaccgaacccg	Protospacer
..  *******  ******************* . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2068336 : 2081736

Tupanvirus(11.11%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX93322.1\|2068336_2070265_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.3e-128	36.9
AUX93323.1\|2070268_2070811_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	31.3
AUX93324.1\|2070908_2071106_+	50S ribosomal protein L35	NA	NA	NA	NA
AUX93325.1\|2071147_2071504_+	50S ribosomal protein L20	NA	NA	NA	NA
AUX93326.1\|2071815_2072799_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	3.8e-34	43.2
AUX93327.1\|2072813_2075201_+\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	5.1e-08	28.1
AUX93328.1\|2075205_2075505_+	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	9.4e-13	38.9
AUX95436.1\|2075723_2076137_+	DUF2502 domain-containing protein	NA	NA	NA	NA
AUX93329.1\|2076249_2077233_+	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	3.3e-14	25.7
AUX93330.1\|2077267_2077813_+	glutathione peroxidase	NA	NA	NA	NA
AUX95437.1\|2077815_2078562_+	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A285PWH2	Cedratvirus	8.1e-05	27.6
AUX93331.1\|2078634_2079096_+	endopeptidase	A0A217EQL1	Bacillus_phage	4.2e-12	37.5
AUX93332.1\|2079479_2080220_+	hypothetical protein	NA	NA	NA	NA
AUX93333.1\|2080296_2081736_+	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.7e-59	41.0

DBSCAN-SWA_2

2503504 : 2512777

uncultured_Caudovirales_phage(22.22%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX95458.1\|2503504_2503735_-\|lysis	lysis protein	A0A2H4JCI1	uncultured_Caudovirales_phage	1.6e-28	82.9
AUX93664.1\|2504288_2505068_-	antitermination protein	A0A286N2Q2	Klebsiella_phage	3.5e-59	45.3
AUX93665.1\|2505090_2506107_-	hypothetical protein	A0A291AWV9	Escherichia_phage	2.6e-99	52.9
AUX93666.1\|2506114_2506924_-	DNA-binding protein	S5MC03	Escherichia_phage	1.8e-103	71.0
AUX93667.1\|2507843_2508143_-	hypothetical protein	A0A1C9IIA0	Salmonella_phage	3.8e-30	63.5
AUX93668.1\|2508139_2509450_-	chromosome partitioning protein ParB	A0A2H4J902	uncultured_Caudovirales_phage	3.5e-96	72.7
AUX93669.1\|2509565_2509997_-	MarR family transcriptional regulator	NA	NA	NA	NA
AUX93670.1\|2510007_2510904_-	transcriptional regulator	A0A248SL49	Klebsiella_phage	3.3e-37	53.4
AUX93671.1\|2510900_2511083_-	DUF4222 domain-containing protein	NA	NA	NA	NA
AUX93672.1\|2511088_2511274_-	hypothetical protein	NA	NA	NA	NA
AUX93673.1\|2511337_2511799_-	hypothetical protein	K7PJS5	Enterobacterial_phage	9.3e-52	70.2
AUX95459.1\|2511818_2512034_-	cell division protein	NA	NA	NA	NA
AUX93674.1\|2512132_2512777_+	DNA-binding protein	A0A1I9KG86	Aeromonas_phage	9.1e-37	40.2

DBSCAN-SWA_3

2576475 : 2584712

Erwinia_phage(75.0%)

integrase

attL 2570004:2570018|attR 2588920:2588934

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2570004:2570018	attL	NA	NA	NA	NA
AUX95463.1\|2576475_2577570_+\|integrase	integrase	A0A0M4S6G4	Salmonella_phage	3.7e-107	57.5
AUX93731.1\|2577919_2578849_-	hypothetical protein	NA	NA	NA	NA
AUX93732.1\|2578929_2579772_-	phage repressor protein CI	Q6K1G0	Salmonella_virus	1.3e-83	54.3
AUX93733.1\|2579886_2580288_+	hypothetical protein	NA	NA	NA	NA
AUX93734.1\|2580319_2580829_+	hypothetical protein	A0A218M4I4	Erwinia_phage	3.8e-54	63.1
AUX93735.1\|2580836_2581031_+	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	4.8e-18	64.1
AUX93736.1\|2581023_2581407_+	hypothetical protein	F1BUS4	Erwinia_phage	3.7e-54	80.3
AUX93737.1\|2581476_2581704_+	hypothetical protein	F1BUS3	Erwinia_phage	6.2e-17	62.7
AUX93738.1\|2581703_2581928_+	hypothetical protein	F1BUS2	Erwinia_phage	1.7e-19	62.2
AUX93739.1\|2584229_2584712_+	DinI family protein	A0A218M4I0	Erwinia_phage	4.4e-44	63.2
2588920:2588934	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3156596 : 3239977

Salmonella_phage(25.93%)

head,tRNA,terminase,holin,integrase,tail

attL 3157461:3157477|attR 3193655:3193671

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX94193.1\|3156596_3157406_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AUX94194.1\|3157405_3158416_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
3157461:3157477	attL	NA	NA	NA	NA
AUX94195.1\|3158531_3159665_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	6.3e-17	27.0
AUX94196.1\|3159723_3160512_-	AraC family transcriptional regulator	NA	NA	NA	NA
AUX94197.1\|3160633_3161545_+	EamA family transporter	NA	NA	NA	NA
AUX94198.1\|3161754_3162792_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AUX95497.1\|3162947_3163400_-	rhodanese	NA	NA	NA	NA
AUX94199.1\|3163486_3164929_+	GntR family transcriptional regulator	A0A1X9I5H2	Streptococcus_phage	2.9e-14	25.8
AUX94200.1\|3164925_3166092_-	arabinose transporter	NA	NA	NA	NA
AUX94201.1\|3166421_3167639_-	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AUX94202.1\|3167797_3169807_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AUX94203.1\|3170082_3170364_-	YfcL family protein	NA	NA	NA	NA
AUX95498.1\|3170393_3170936_-	elongation factor P hydroxylase	NA	NA	NA	NA
AUX95499.1\|3171011_3171758_-	hypothetical protein	NA	NA	NA	NA
AUX94204.1\|3171819_3172644_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AUX94205.1\|3172647_3173733_-	chorismate synthase	A0A291AU41	Pandoravirus	5.7e-92	47.7
AUX95500.1\|3173754_3174687_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AUX95501.1\|3174852_3175401_+	endonuclease SmrB	NA	NA	NA	NA
AUX94206.1\|3175413_3175896_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AUX94207.1\|3176066_3178220_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AUX94208.1\|3178224_3179535_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AUX94209.1\|3179784_3180081_-	hypothetical protein	NA	NA	NA	NA
AUX94210.1\|3180428_3181763_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AUX94211.1\|3181877_3182642_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AUX94212.1\|3182677_3183892_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
AUX94213.1\|3183888_3184350_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
AUX94214.1\|3184346_3184904_-	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
AUX94215.1\|3184900_3186856_-	heme lyase NrfEFG subunit NrfE	NA	NA	NA	NA
AUX94216.1\|3187331_3187559_-	heme exporter protein CcmD	NA	NA	NA	NA
AUX94217.1\|3187555_3188299_-	heme ABC transporter permease	NA	NA	NA	NA
AUX95502.1\|3188338_3188998_-	heme exporter protein CcmB	NA	NA	NA	NA
AUX94218.1\|3188997_3189615_-	heme ABC transporter ATP-binding protein CcmA	A0A2H4UU96	Bodo_saltans_virus	3.8e-08	25.8
AUX94219.1\|3189857_3190781_+	hypothetical protein	E7DYY8	Enterobacteria_phage	2.9e-113	75.0
AUX94220.1\|3191096_3192269_+\|integrase	integrase	C6ZR22	Salmonella_phage	1.4e-189	81.5
AUX94221.1\|3193700_3194705_-	hypothetical protein	NA	NA	NA	NA
3193655:3193671	attR	NA	NA	NA	NA
AUX94222.1\|3194704_3197863_-	hypothetical protein	H6WRW4	Salmonella_phage	0.0e+00	69.6
AUX94223.1\|3197872_3198397_-\|tail	phage tail protein	H6WRW3	Salmonella_phage	1.6e-44	56.3
AUX94224.1\|3198339_3199065_-\|tail	phage tail protein	A0A1V0E5M9	Salmonella_phage	1.4e-99	67.9
AUX94225.1\|3199064_3199769_-\|tail	phage minor tail protein L	H6WRW1	Salmonella_phage	1.5e-106	75.6
AUX94226.1\|3199765_3200119_-\|tail	phage tail protein	H6WRV8	Salmonella_phage	7.1e-44	74.4
AUX94227.1\|3200161_3200452_-	hypothetical protein	NA	NA	NA	NA
AUX94228.1\|3200659_3203179_-\|tail	phage tail tape measure protein	H6WRV7	Salmonella_phage	1.5e-82	35.5
AUX94229.1\|3203238_3203577_-	hypothetical protein	A0A222YZ97	Escherichia_phage	2.1e-29	57.7
AUX94230.1\|3204148_3204844_-	hypothetical protein	G0ZNE7	Cronobacter_phage	1.0e-73	61.5
AUX94231.1\|3204893_3205637_-	DNA breaking-rejoining protein	G0ZNE6	Cronobacter_phage	1.0e-87	68.7
AUX94232.1\|3205705_3206665_-	hypothetical protein	G0ZNE5	Cronobacter_phage	6.1e-37	47.1
AUX94233.1\|3206739_3207123_-	hypothetical protein	G0ZNE4	Cronobacter_phage	3.7e-38	56.7
AUX94234.1\|3207163_3207706_-	HNH endonuclease	A0A2I7S0H7	Vibrio_phage	8.4e-36	46.0
AUX94235.1\|3207809_3208178_-	hypothetical protein	F1C5E3	Cronobacter_phage	1.1e-44	70.5
AUX94236.1\|3208180_3208528_-	hypothetical protein	G0ZNE2	Cronobacter_phage	3.1e-31	58.3
AUX94237.1\|3208530_3208701_-	50S ribosomal protein L13	NA	NA	NA	NA
AUX94238.1\|3208700_3209102_-	hypothetical protein	G0ZNE1	Cronobacter_phage	3.5e-63	89.5
AUX94239.1\|3209162_3209459_-	hypothetical protein	G0ZNE0	Cronobacter_phage	3.2e-45	91.8
AUX94240.1\|3209469_3210567_-	hypothetical protein	G0ZND9	Cronobacter_phage	1.9e-207	98.4
AUX94241.1\|3210581_3211034_-	hypothetical protein	A0A1V0E5Q8	Salmonella_phage	2.0e-62	81.8
AUX94242.1\|3211033_3212308_-	hypothetical protein	G0ZND7	Cronobacter_phage	1.1e-214	88.0
AUX94243.1\|3212324_3213287_-\|head	phage head morphogenesis protein	G0ZND6	Cronobacter_phage	2.2e-23	76.4
AUX94244.1\|3213234_3214575_-	DUF1073 domain-containing protein	G0ZND5	Cronobacter_phage	7.0e-225	91.1
AUX94245.1\|3214593_3215847_-\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	1.7e-212	96.2
AUX94246.1\|3215839_3216256_-	hypothetical protein	B6SCV4	Bacteriophage	1.1e-35	63.2
AUX94247.1\|3216957_3217902_-	hypothetical protein	H2DE35	Erwinia_phage	3.1e-25	33.2
AUX94248.1\|3218044_3218551_-	hypothetical protein	A0A1W6DY33	Salmonella_phage	8.4e-46	54.3
AUX94249.1\|3218895_3219351_-	Rz lytic protein	NA	NA	NA	NA
AUX94250.1\|3219338_3219971_-	hypothetical protein	A0A1W6JTC9	Pseudomonas_phage	1.1e-42	45.6
AUX95503.1\|3219954_3220308_-\|holin	phage holin, lambda family	NA	NA	NA	NA
AUX94251.1\|3220681_3221296_-	hypothetical protein	A0A1V0E5R2	Salmonella_phage	8.6e-37	39.0
AUX94252.1\|3222044_3222653_-	hypothetical protein	S4TSR3	Salmonella_phage	6.5e-45	48.1
AUX94253.1\|3222636_3222789_-	hypothetical protein	NA	NA	NA	NA
AUX94254.1\|3222775_3223201_-	HNH endonuclease	E7EKU5	Edwardsiella_phage	1.4e-54	72.9
AUX94255.1\|3223197_3223371_-	NinE family protein	Q5G8S3	Enterobacteria_phage	1.8e-08	53.6
AUX94256.1\|3223355_3223571_-	protein ninH	A0A088CC23	Shigella_phage	1.1e-12	66.7
AUX94257.1\|3223567_3223849_-	hypothetical protein	NA	NA	NA	NA
AUX94258.1\|3223845_3224322_-	HNH endonuclease	W6PP19	Citrobacter_phage	6.7e-29	51.4
AUX94259.1\|3224272_3224767_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.8e-43	57.6
AUX94260.1\|3225159_3225495_-	hypothetical protein	NA	NA	NA	NA
AUX95504.1\|3225494_3227849_-	helicase DnaB	G9L681	Escherichia_phage	7.1e-188	47.7
AUX95505.1\|3227908_3228667_-	replication of DNA	K7P7N8	Enterobacteria_phage	2.0e-75	58.5
AUX94261.1\|3228875_3229172_-	hypothetical protein	A0A220NRS4	Escherichia_phage	4.8e-25	67.8
AUX94262.1\|3229310_3229520_-	XRE family transcriptional regulator	A0A1P8DTF8	Proteus_phage	1.1e-15	56.5
AUX95506.1\|3229625_3230285_+	LexA family transcriptional repressor	A0A2H4J176	uncultured_Caudovirales_phage	3.2e-69	62.5
AUX94263.1\|3230434_3230731_+	hypothetical protein	NA	NA	NA	NA
AUX94264.1\|3230727_3231042_+	hypothetical protein	C6ZR45	Salmonella_phage	6.8e-22	57.8
AUX94265.1\|3231113_3231590_-	hypothetical protein	NA	NA	NA	NA
AUX94266.1\|3231785_3232109_+	antitermination protein	A0A0N7C217	Escherichia_phage	9.5e-11	55.9
AUX94267.1\|3232341_3233046_+	hypothetical protein	Q5MBW0	Stx1-converting_phage	1.5e-53	51.9
AUX94268.1\|3233172_3233451_+	hypothetical protein	NA	NA	NA	NA
AUX94269.1\|3233463_3233712_+	hypothetical protein	A0A088F844	Salmonella_phage	7.5e-24	60.2
AUX94270.1\|3234026_3234335_+	hypothetical protein	NA	NA	NA	NA
AUX94271.1\|3234335_3235271_+	recombinase RecT	F1C5B8	Cronobacter_phage	1.6e-138	78.0
AUX95507.1\|3235270_3235951_+	exonuclease	V5UT69	Shigella_phage	8.2e-105	78.8
AUX94272.1\|3235953_3236250_+	hypothetical protein	NA	NA	NA	NA
AUX94273.1\|3236252_3236471_+	hypothetical protein	NA	NA	NA	NA
AUX94274.1\|3236467_3236884_+	hypothetical protein	NA	NA	NA	NA
AUX94275.1\|3236876_3237167_+	hypothetical protein	NA	NA	NA	NA
AUX94276.1\|3237355_3238108_+	SAM-dependent methyltransferase	M4M9L8	Vibrio_phage	5.3e-28	42.7
AUX94277.1\|3238146_3238389_+	DNA polymerase III subunit theta	A0A2H4J4A9	uncultured_Caudovirales_phage	1.2e-29	80.0
AUX94278.1\|3238385_3238637_+	hypothetical protein	NA	NA	NA	NA
AUX95508.1\|3238728_3238941_+	hypothetical protein	A0A2H4IYB3	uncultured_Caudovirales_phage	3.6e-19	61.4
AUX94279.1\|3239773_3239977_+	hypothetical protein	E5AGD1	Erwinia_phage	7.3e-17	65.6

DBSCAN-SWA_5

3561775 : 3571151

Mycobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX94544.1\|3561775_3562846_-	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	2.0e-113	62.2
AUX94545.1\|3562940_3563441_-	hypothetical protein	B5TK85	Pseudomonas_phage	5.8e-31	50.6
AUX94546.1\|3563791_3564679_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
AUX94547.1\|3564712_3565054_-	hypothetical protein	NA	NA	NA	NA
AUX94548.1\|3565365_3567909_+	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	1.0e-27	22.1
AUX94549.1\|3568240_3569233_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.6e-32	37.6
AUX95522.1\|3569282_3570353_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	1.2e-06	36.4
AUX94550.1\|3570524_3571151_-	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.1e-34	47.9

DBSCAN-SWA_6

3873369 : 3876908

Erwinia_phage(57.14%)

integrase

attL 3863014:3863063|attR 3879029:3879078

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3863014:3863063	attL	NA	NA	NA	NA
AUX94796.1\|3873369_3873597_-	hypothetical protein	F1BUS2	Erwinia_phage	1.7e-19	61.6
AUX94797.1\|3873596_3873827_-	hypothetical protein	E5G6L6	Salmonella_phage	4.8e-09	58.3
AUX94798.1\|3873895_3874237_-	hypothetical protein	A0A1S6L019	Salmonella_phage	7.9e-32	61.1
AUX94799.1\|3874200_3874392_-	DUF2724 domain-containing protein	F1BUS5	Erwinia_phage	7.1e-14	66.1
AUX94800.1\|3874399_3874909_-	hypothetical protein	F1BUS6	Erwinia_phage	3.0e-59	68.6
AUX94801.1\|3874944_3875181_-	regulator	NA	NA	NA	NA
AUX94802.1\|3875270_3875876_+	phage repressor protein	F1BUN8	Cronobacter_phage	2.0e-30	40.2
AUX94803.1\|3875885_3876908_+\|integrase	integrase	F1BUS9	Erwinia_phage	3.8e-114	61.3
3879029:3879078	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4059127 : 4071718

uncultured_Caudovirales_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AUX94959.1\|4059127_4060162_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	8.9e-111	58.2
AUX95541.1\|4060211_4061486_-	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.4e-144	60.0
AUX94960.1\|4061527_4061968_-	peptidase	A0A1W6JNS2	Morganella_phage	3.6e-29	53.3
AUX94961.1\|4062161_4063061_-	LysR family transcriptional regulator	NA	NA	NA	NA
AUX94962.1\|4063159_4063687_+	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	7.2e-16	37.1
AUX94963.1\|4063683_4064916_+	MFS transporter	NA	NA	NA	NA
AUX94964.1\|4064964_4065300_+	ArsR family transcriptional regulator	NA	NA	NA	NA
AUX95542.1\|4065305_4066019_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.2e-95	71.7
AUX94965.1\|4066075_4066504_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.2e-50	70.0
AUX94966.1\|4066553_4067837_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	2.9e-175	75.1
AUX94967.1\|4067933_4068287_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.2e-21	57.3
AUX94968.1\|4068549_4069008_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
AUX95543.1\|4069516_4071718_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.9e-134	45.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026377

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection