CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP014071	Klebsiella quasipneumoniae strain ATCC 700603 chromosome, complete genome	0 crisprs	cas3,DEDDh,WYL,DinG,csa3	9
CP014072	Klebsiella quasipneumoniae strain ATCC 700603 plasmid unnamed1	0 crisprs	NA	1
CP014073	Klebsiella quasipneumoniae strain ATCC 700603 plasmid unnamed2, complete sequence	0 crisprs	csa3	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2151115 : 2157974

Moumouvirus(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF88181.1\|2151115_2152501_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4
AVF88182.1\|2152546_2152759_-	ribosome-associated protein	NA	NA	NA	NA
AVF88183.1\|2152760_2153627_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
AVF88184.1\|2153665_2153989_+	hypothetical protein	NA	NA	NA	NA
AVF91095.1\|2154208_2155423_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	4.7e-127	53.4
AVF88185.1\|2155566_2156292_+	hypothetical protein	NA	NA	NA	NA
AVF88186.1\|2156519_2156717_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	6.6e-07	43.4
AVF88187.1\|2156716_2157151_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	2.9e-31	57.9
AVF88188.1\|2157164_2157974_+	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	3.1e-26	42.4

DBSCAN-SWA_2

2622906 : 2681478

Salmonella_phage(40.0%)

tRNA,integrase,plate,portal,protease

attL 2622814:2622832|attR 2637632:2637650

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2622814:2622832	attL	NA	NA	NA	NA
AVF88600.1\|2622906_2623959_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	5.7e-105	55.3
AVF88601.1\|2624030_2626025_-	hypothetical protein	NA	NA	NA	NA
AVF88602.1\|2626049_2626640_-	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.3e-41	42.2
AVF88603.1\|2626735_2626957_+	regulator	NA	NA	NA	NA
AVF88604.1\|2626989_2627499_+	hypothetical protein	A0A1S6L008	Salmonella_phage	2.2e-78	87.6
AVF91115.1\|2627506_2627692_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.2e-21	77.0
AVF88605.1\|2627670_2628012_+	hypothetical protein	E5G6L5	Salmonella_phage	8.7e-47	83.2
AVF88606.1\|2628079_2628316_+	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	3.7e-12	61.9
AVF91116.1\|2628315_2628522_+	conjugal transfer protein TraR	A0A1S6L007	Salmonella_phage	1.0e-13	78.0
AVF88607.1\|2629950_2630136_+	hypothetical protein	E5G6M0	Salmonella_phage	5.6e-08	50.0
AVF88608.1\|2630210_2630396_+	hypothetical protein	NA	NA	NA	NA
AVF88609.1\|2630420_2631068_+\|protease	serine protease	NA	NA	NA	NA
AVF88610.1\|2631064_2631511_+	hypothetical protein	NA	NA	NA	NA
AVF88611.1\|2631537_2632560_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	2.3e-175	89.1
AVF88612.1\|2633633_2634836_+	SIR2 family protein	NA	NA	NA	NA
AVF88613.1\|2634911_2635484_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	2.1e-77	72.3
AVF88614.1\|2635480_2635843_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.1e-47	83.1
AVF88615.1\|2637780_2639466_-	transporter	NA	NA	NA	NA
2637632:2637650	attR	NA	NA	NA	NA
AVF88616.1\|2639733_2640117_+	hypothetical protein	NA	NA	NA	NA
AVF88617.1\|2640123_2640387_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
AVF91117.1\|2640589_2640877_+	hypothetical protein	NA	NA	NA	NA
AVF88618.1\|2640860_2641583_+	oxygen-insensitive NADPH nitroreductase	NA	NA	NA	NA
AVF88619.1\|2641697_2642600_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	9.1e-35	34.5
AVF88620.1\|2642688_2643168_+	YbjN domain-containing protein	NA	NA	NA	NA
AVF88621.1\|2643516_2644629_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
AVF91118.1\|2644790_2645924_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-30	34.9
AVF88622.1\|2645934_2646888_+	putrescine ABC transporter permease	NA	NA	NA	NA
AVF88623.1\|2646884_2647730_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
AVF88624.1\|2647787_2648276_+	DUF2593 domain-containing protein	NA	NA	NA	NA
AVF88625.1\|2648317_2649445_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	2.7e-20	26.5
AVF88626.1\|2649523_2650240_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	6.1e-34	36.9
AVF88627.1\|2650236_2651709_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.9e-27	31.8
AVF88628.1\|2651792_2652524_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVF88629.1\|2652708_2653377_-	arginine transporter permease subunit ArtM	NA	NA	NA	NA
AVF88630.1\|2653376_2654093_-	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
AVF91119.1\|2654099_2654831_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
AVF88631.1\|2654851_2655580_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	2.7e-29	37.1
AVF88632.1\|2655806_2656322_-	lipoprotein	NA	NA	NA	NA
AVF88633.1\|2656572_2656860_-	DUF1471 domain-containing protein	NA	NA	NA	NA
AVF88634.1\|2657204_2658344_+	GGDEF domain-containing protein	NA	NA	NA	NA
AVF88635.1\|2658375_2659206_+	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	1.8e-05	30.5
AVF88636.1\|2659202_2660216_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
AVF88637.1\|2660303_2661746_-	DUF2867 domain-containing protein	NA	NA	NA	NA
AVF88638.1\|2661756_2662758_-	low-specificity L-threonine aldolase	NA	NA	NA	NA
AVF91120.1\|2662796_2664515_-	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
AVF88639.1\|2664666_2665101_+	DoxX family protein	NA	NA	NA	NA
AVF88640.1\|2665174_2665357_-	hypothetical protein	NA	NA	NA	NA
AVF88641.1\|2665307_2666276_-	NADH oxidoreductase	NA	NA	NA	NA
AVF91121.1\|2666286_2667939_-	hydroxylamine reductase	NA	NA	NA	NA
AVF88642.1\|2668082_2668982_-	DUF340 domain-containing protein	NA	NA	NA	NA
AVF88643.1\|2669096_2669792_-	aquaporin Z	NA	NA	NA	NA
AVF88644.1\|2670211_2671870_+	DUF2813 domain-containing protein	NA	NA	NA	NA
AVF88645.1\|2672016_2673132_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
AVF88646.1\|2673128_2675069_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.4e-37	40.5
AVF88647.1\|2675145_2675367_-	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
AVF88648.1\|2675692_2676010_+\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
AVF88649.1\|2676040_2678320_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.8e-165	42.0
AVF88650.1\|2678443_2678662_-	translation initiation factor IF-1	NA	NA	NA	NA
AVF88651.1\|2679012_2679717_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
AVF88652.1\|2679756_2681478_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.7e-13	32.5

DBSCAN-SWA_3

2813892 : 2849612

Enterobacteria_phage(48.28%)

terminase,integrase,tail,plate,portal,capsid

attL 2809969:2809984|attR 2824161:2824176

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2809969:2809984	attL	NA	NA	NA	NA
AVF88758.1\|2813892_2814900_-\|integrase	integrase	A0A0M4RTQ0	Salmonella_phage	4.5e-99	52.5
AVF88759.1\|2814987_2815290_-	XRE family transcriptional regulator	Q1JS63	Enterobacteria_phage	2.6e-26	61.0
AVF88760.1\|2815384_2815717_+	hypothetical protein	NA	NA	NA	NA
AVF91127.1\|2815926_2816106_+	DUF4761 domain-containing protein	NA	NA	NA	NA
AVF88761.1\|2816117_2816357_+	hypothetical protein	NA	NA	NA	NA
AVF91128.1\|2816359_2816632_+	hypothetical protein	NA	NA	NA	NA
AVF91129.1\|2816700_2816925_+	hypothetical protein	NA	NA	NA	NA
AVF88762.1\|2816921_2817503_+	3'-5' exoribonuclease	A0A1Q1PW66	Pseudoalteromonas_phage	9.1e-28	37.3
AVF88763.1\|2817511_2818480_+	adenine methylase	A0A0M4QWR0	Salmonella_phage	9.3e-78	50.8
AVF91130.1\|2818963_2819239_-	hypothetical protein	NA	NA	NA	NA
AVF88764.1\|2819339_2821955_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	4.4e-199	53.3
AVF88765.1\|2822215_2822902_+	hypothetical protein	NA	NA	NA	NA
AVF88766.1\|2823359_2824412_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	2.1e-139	68.0
2824161:2824176	attR	NA	NA	NA	NA
AVF88767.1\|2824411_2826133_-	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	1.4e-222	65.6
AVF88768.1\|2826292_2827126_+\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	5.5e-95	64.1
AVF88769.1\|2827150_2828200_+\|capsid	phage major capsid protein, P2 family	A0A0M3ULA3	Salmonella_phage	4.4e-105	54.8
AVF88770.1\|2828247_2829162_+\|terminase	terminase	B9A7B6	Serratia_phage	4.4e-85	74.1
AVF88771.1\|2829264_2829762_+\|capsid	capsid assembly protein	B9A7B7	Serratia_phage	7.7e-60	70.3
AVF88772.1\|2829761_2829962_+\|tail	phage tail protein	A0A0A7NV57	Enterobacteria_phage	6.7e-15	66.2
AVF88773.1\|2829952_2830234_+	hypothetical protein	B9A7B8	Serratia_phage	6.3e-19	58.4
AVF88774.1\|2830230_2830782_+	lysozyme	Q1I0Z1	Pasteurella_virus	1.7e-28	40.8
AVF88775.1\|2830778_2831174_+	DUF2570 domain-containing protein	NA	NA	NA	NA
AVF88776.1\|2831318_2831777_+\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.3e-34	48.7
AVF88777.1\|2831773_2832415_+	phage virion morphogenesis protein	A0A0M4RCU1	Salmonella_phage	1.2e-44	48.0
AVF88778.1\|2832414_2832999_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	3.0e-63	61.2
AVF88779.1\|2832995_2833364_+\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	2.0e-28	56.5
AVF88780.1\|2833350_2834250_+\|plate	baseplate assembly protein	A0A0A7NPY5	Enterobacteria_phage	3.1e-91	61.2
AVF88781.1\|2834242_2834839_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.3e-41	42.4
AVF88782.1\|2837215_2837479_+	hypothetical protein	NA	NA	NA	NA
AVF88783.1\|2837665_2838847_+\|tail	phage tail protein	S4TP62	Salmonella_phage	6.1e-47	53.1
AVF88784.1\|2838946_2839801_-	hypothetical protein	NA	NA	NA	NA
AVF88785.1\|2840074_2840563_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	2.0e-52	59.9
AVF88786.1\|2840574_2843511_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	5.3e-209	45.1
AVF91131.1\|2843500_2843677_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	2.3e-11	69.0
AVF88787.1\|2843673_2843973_-\|tail	phage tail protein	B9A7B2	Serratia_phage	5.3e-32	77.1
AVF88788.1\|2844027_2844543_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	2.4e-64	71.2
AVF88789.1\|2844542_2845724_-\|tail	phage tail protein	A0A0A7NV69	Enterobacteria_phage	1.2e-156	69.8
AVF88790.1\|2845877_2847032_+	hypothetical protein	B9A7A9	Serratia_phage	3.8e-179	81.2
AVF88791.1\|2847076_2847325_+	hypothetical protein	NA	NA	NA	NA
AVF88792.1\|2847340_2847562_+	hypothetical protein	NA	NA	NA	NA
AVF88793.1\|2847601_2847988_-	hypothetical protein	NA	NA	NA	NA
AVF88794.1\|2848157_2848385_-	hypothetical protein	NA	NA	NA	NA
AVF88795.1\|2848405_2849002_-	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
AVF88796.1\|2849129_2849351_-	hypothetical protein	NA	NA	NA	NA
AVF88797.1\|2849438_2849612_+	stress-induced protein	Q9KX95	Enterobacteria_phage	1.4e-05	92.6

DBSCAN-SWA_4

2965906 : 3003350

Klebsiella_phage(40.0%)

tRNA,terminase,integrase,head,tail,holin,portal,capsid,protease

attL 2955460:2955474|attR 2991622:2991636

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2955460:2955474	attL	NA	NA	NA	NA
AVF91140.1\|2965906_2967013_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
AVF88900.1\|2967069_2967528_-	NUDIX hydrolase	NA	NA	NA	NA
AVF88901.1\|2967544_2968195_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
AVF88902.1\|2968435_2969686_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
AVF88903.1\|2969798_2970941_-\|integrase	integrase	Q77Z02	Phage_21	2.5e-170	81.1
AVF88904.1\|2970930_2971167_-	excisionase	NA	NA	NA	NA
AVF88905.1\|2971196_2971469_-	hypothetical protein	K7PKM4	Enterobacterial_phage	1.7e-13	47.1
AVF88906.1\|2971465_2971744_-	hypothetical protein	NA	NA	NA	NA
AVF88907.1\|2971736_2971961_-	hypothetical protein	S4TVX5	Salmonella_phage	7.0e-13	48.5
AVF88908.1\|2971957_2972440_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	4.2e-71	81.2
AVF88909.1\|2972432_2972777_-	hypothetical protein	NA	NA	NA	NA
AVF88910.1\|2972904_2973690_-	hypothetical protein	A4JX52	Burkholderia_virus	4.2e-60	49.8
AVF88911.1\|2973689_2973989_-	hypothetical protein	NA	NA	NA	NA
AVF88912.1\|2974351_2975047_-	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.5e-87	71.3
AVF88913.1\|2975144_2975387_+	XRE family transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.3e-25	80.3
AVF88914.1\|2975421_2975883_+	hypothetical protein	K7PJS5	Enterobacterial_phage	6.4e-69	88.2
AVF88915.1\|2976120_2976333_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	2.2e-16	72.7
AVF88916.1\|2976289_2977204_+	transcriptional regulator	H2DE83	Erwinia_phage	1.1e-30	57.1
AVF88917.1\|2977200_2978010_+	DNA methylase	A0A1C9II58	Salmonella_phage	1.6e-110	69.3
AVF88918.1\|2978019_2978397_+	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	6.7e-48	73.6
AVF88919.1\|2978409_2979390_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	7.1e-134	67.5
AVF88920.1\|2979403_2979982_+	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	3.8e-50	56.7
AVF88921.1\|2980329_2980740_+	hypothetical protein	NA	NA	NA	NA
AVF88922.1\|2980736_2981309_+	hypothetical protein	NA	NA	NA	NA
AVF88923.1\|2981480_2981792_+\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
AVF88924.1\|2981788_2982328_+	hypothetical protein	A0A286N2Q6	Klebsiella_phage	5.1e-102	99.4
AVF88925.1\|2982324_2982672_+	hypothetical protein	A0A286N2Q7	Klebsiella_phage	3.5e-35	70.4
AVF88926.1\|2982668_2982944_+	hypothetical protein	G8C7W1	Escherichia_phage	9.2e-23	65.2
AVF88927.1\|2982894_2983086_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	1.0e-20	85.7
AVF88928.1\|2983827_2984262_+	hypothetical protein	NA	NA	NA	NA
AVF91141.1\|2984384_2984735_+	HNH endonuclease	A0A1B5FP94	Escherichia_phage	2.3e-50	79.1
AVF88929.1\|2984892_2985390_+\|terminase	phage terminase small subunit P27 family	K7PHI2	Enterobacteria_phage	1.9e-63	72.0
AVF88930.1\|2985393_2987145_+\|terminase	terminase large subunit	A0A1P8DTK0	Proteus_phage	5.2e-252	72.2
AVF88931.1\|2987292_2988519_+\|portal	phage portal protein	Q8SBI0	Shigella_phage	2.5e-208	85.3
AVF88932.1\|2988511_2989111_+\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.0e-90	82.5
AVF88933.1\|2989120_2990359_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	8.9e-158	69.2
AVF88934.1\|2990436_2990754_+\|head,tail	phage gp6-like head-tail connector protein	A0A1W6JNZ5	Morganella_phage	2.4e-22	52.9
AVF88935.1\|2990823_2991036_+	hypothetical protein	A0A286S2A5	Klebsiella_phage	1.1e-15	74.3
AVF88936.1\|2991037_2991370_+\|head,tail	head-tail adaptor protein	A0A286S2A2	Klebsiella_phage	2.0e-56	99.1
AVF88937.1\|2991362_2991902_+	hypothetical protein	A0A286S249	Klebsiella_phage	1.1e-91	95.5
2991622:2991636	attR	NA	NA	NA	NA
AVF88938.1\|2991898_2992264_+	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	2.3e-61	92.6
AVF88939.1\|2992320_2992812_+\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	5.0e-88	99.4
AVF88940.1\|2992855_2993209_+\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	4.9e-61	99.1
AVF88941.1\|2993241_2993505_+\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	6.9e-44	98.9
AVF88942.1\|2993993_2996417_+\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	0.0e+00	79.9
AVF88943.1\|2996416_2996887_+	hypothetical protein	A0A286S298	Klebsiella_phage	8.3e-64	67.7
AVF88944.1\|2996883_2997366_+	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	7.2e-79	90.6
AVF88945.1\|2997376_2997757_+	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.7e-67	92.9
AVF88946.1\|2997753_3000822_+	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.9
AVF88947.1\|3000878_3003350_+	hypothetical protein	J7HXC9	Pseudomonas_phage	2.0e-15	33.9

DBSCAN-SWA_5

3430245 : 3441131

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF89337.1\|3430245_3430866_-	aldolase	A0A077SK32	Escherichia_phage	1.0e-109	94.7
AVF89338.1\|3430858_3432124_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.0e-217	92.2
AVF89339.1\|3432135_3433038_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.8e-155	97.7
AVF89340.1\|3433298_3434060_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.0e-131	98.4
AVF89341.1\|3434080_3434941_-	class A broad-spectrum beta-lactamase OKP-B-6	A0A077SL40	Escherichia_phage	6.2e-142	89.2
AVF91164.1\|3435237_3435498_+	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
AVF89342.1\|3435584_3436673_+	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	1.9e-204	96.7
AVF89343.1\|3436703_3437969_-	MFS transporter	NA	NA	NA	NA
AVF89344.1\|3438023_3441131_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5

DBSCAN-SWA_6

4349494 : 4364739

Bacillus_phage(18.18%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF90167.1\|4349494_4350877_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	4.2e-31	25.8
AVF90168.1\|4350900_4352316_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
AVF90169.1\|4352595_4352880_-	hypothetical protein	NA	NA	NA	NA
AVF90170.1\|4353390_4354395_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	6.8e-31	29.2
AVF90171.1\|4355339_4356506_-	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
AVF90172.1\|4356686_4357241_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.0e-52	58.8
AVF90173.1\|4357255_4358146_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.7e-28	33.2
AVF90174.1\|4358177_4359047_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	9.8e-111	66.3
AVF90175.1\|4359073_4360138_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.6e-105	55.0
AVF90176.1\|4360296_4361667_-	phosphomannomutase	A0A127AWJ1	Bacillus_phage	8.4e-32	26.0
AVF90177.1\|4361690_4363106_-	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	3.1e-53	30.8
AVF90178.1\|4363332_4364739_-	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	3.6e-38	28.7

DBSCAN-SWA_7

4406731 : 4413654

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF90204.1\|4406731_4408228_+	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	6.6e-30	28.3
AVF90205.1\|4408224_4408947_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
AVF90206.1\|4409265_4410627_+	U32 family peptidase	Q6DW11	Phage_TP	1.5e-206	94.2
AVF91219.1\|4410872_4411766_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.8e-14	29.3
AVF90207.1\|4412006_4412780_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
AVF91220.1\|4412790_4413654_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

DBSCAN-SWA_8

4624174 : 4713952

100

Klebsiella_phage(30.91%)

tRNA,terminase,tail,head,portal,holin,capsid,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF90390.1\|4624174_4624987_-\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
AVF90391.1\|4624986_4626000_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
AVF91228.1\|4626063_4627176_-	4-phosphoerythronate dehydrogenase PdxB	A0A2R8FDS8	Brazilian_cedratvirus	2.1e-20	27.9
AVF90392.1\|4627310_4628288_+	flagella biosynthesis regulator Flk	NA	NA	NA	NA
AVF90393.1\|4628374_4629550_-	arabinose transporter	NA	NA	NA	NA
AVF90394.1\|4629759_4630980_-	beta-ketoacyl-[acyl-carrier-protein] synthase I	NA	NA	NA	NA
AVF91229.1\|4631138_4633127_+\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
AVF90395.1\|4633188_4633470_-	YfcL family protein	NA	NA	NA	NA
AVF90396.1\|4633501_4634050_-	elongation factor P hydroxylase	NA	NA	NA	NA
AVF90397.1\|4634049_4634859_-	hypothetical protein	NA	NA	NA	NA
AVF90398.1\|4634858_4635683_-	penicillin-insensitive murein endopeptidase	NA	NA	NA	NA
AVF90399.1\|4635685_4636771_-	chorismate synthase	A0A291AU41	Pandoravirus	1.0e-88	46.4
AVF90400.1\|4636813_4637746_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AVF90401.1\|4637913_4638465_+	endonuclease SmrB	NA	NA	NA	NA
AVF90402.1\|4638484_4638970_-	phosphohistidine phosphatase SixA	NA	NA	NA	NA
AVF90403.1\|4639179_4641324_-	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
AVF90404.1\|4641323_4642634_-	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
AVF90405.1\|4642792_4643077_-	DUF406 domain-containing protein	NA	NA	NA	NA
AVF90406.1\|4643444_4644773_+	long-chain fatty acid transporter FadL	NA	NA	NA	NA
AVF90407.1\|4644831_4645593_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
AVF90408.1\|4645882_4646812_+	hypothetical protein	E7DYY8	Enterobacteria_phage	3.6e-135	83.7
AVF90409.1\|4648150_4648519_-	hypothetical protein	K7PGV5	Enterobacterial_phage	8.6e-24	49.0
AVF91230.1\|4648475_4648715_-	DNA polymerase V	I6PD82	Cronobacter_phage	1.5e-21	55.7
AVF91231.1\|4649479_4649902_+	RND transporter	NA	NA	NA	NA
AVF90410.1\|4650676_4651126_+	hypothetical protein	NA	NA	NA	NA
AVF90411.1\|4651200_4651464_-	hypothetical protein	NA	NA	NA	NA
AVF90412.1\|4651466_4653938_-	hypothetical protein	J7HXC9	Pseudomonas_phage	2.6e-15	33.9
AVF90413.1\|4653993_4657062_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	90.5
AVF90414.1\|4657058_4657439_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.7e-67	92.9
AVF90415.1\|4657568_4657838_+	DUF1883 domain-containing protein	NA	NA	NA	NA
AVF90416.1\|4657818_4658187_-	hypothetical protein	NA	NA	NA	NA
AVF90417.1\|4658196_4658679_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	6.1e-78	89.4
AVF90418.1\|4658675_4659146_-	hypothetical protein	A0A286S298	Klebsiella_phage	3.7e-64	68.4
AVF90419.1\|4659145_4661593_-\|tail	phage tail tape measure protein	A0A286S1S3	Klebsiella_phage	2.6e-265	64.3
AVF90420.1\|4662171_4662435_-\|tail	phage tail protein	A0A286S1P2	Klebsiella_phage	1.1e-41	95.4
AVF90421.1\|4662467_4662821_-\|tail	phage tail protein	A0A286S1N4	Klebsiella_phage	4.9e-61	99.1
AVF90422.1\|4662864_4663356_-\|tail	phage tail protein	A0A286S1Q8	Klebsiella_phage	2.5e-87	99.4
AVF90423.1\|4663412_4663778_-	DUF3168 domain-containing protein	A0A286S1R1	Klebsiella_phage	7.8e-62	93.4
AVF90424.1\|4663774_4664314_-	hypothetical protein	A0A286S249	Klebsiella_phage	1.1e-93	98.9
AVF90425.1\|4664306_4664639_-\|head,tail	head-tail adaptor protein	A0A286S2A2	Klebsiella_phage	3.1e-57	100.0
AVF90426.1\|4664640_4664838_-	hypothetical protein	A0A286S2A5	Klebsiella_phage	5.4e-25	96.9
AVF90427.1\|4664909_4665236_-\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.6e-42	72.2
AVF90428.1\|4665235_4665487_-	hypothetical protein	K7PHI6	Enterobacteria_phage	5.3e-09	66.0
AVF90429.1\|4665529_4666747_-\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	3.9e-182	81.4
AVF90430.1\|4666756_4667605_-\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	4.6e-129	85.0
AVF90431.1\|4667617_4668925_-\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.0e-212	84.6
AVF90432.1\|4668924_4670667_-\|terminase	terminase large subunit	A0A0U2C138	Paracoccus_phage	2.6e-139	45.6
AVF90433.1\|4670620_4671085_-\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	3.7e-48	61.4
AVF90434.1\|4671267_4671609_-	HNH endonuclease	A0A2I6PIG1	Escherichia_phage	1.0e-47	73.9
AVF90435.1\|4671666_4671852_-	Eag protein	K7PL40	Enterobacteria_phage	1.2e-05	37.7
AVF90436.1\|4671932_4672178_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	1.4e-35	98.8
AVF90437.1\|4672320_4672662_-	hypothetical protein	NA	NA	NA	NA
AVF90438.1\|4672750_4672948_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	8.0e-21	86.0
AVF90439.1\|4672898_4673174_-	hypothetical protein	G8C7W1	Escherichia_phage	1.0e-13	46.1
AVF90440.1\|4673170_4673518_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	1.5e-38	78.3
AVF90441.1\|4673514_4674054_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	9.7e-101	98.3
AVF90442.1\|4674050_4674362_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	1.1e-40	83.5
AVF90443.1\|4675759_4676581_+	hypothetical protein	NA	NA	NA	NA
AVF90444.1\|4676605_4677091_+	hypothetical protein	NA	NA	NA	NA
AVF90445.1\|4677139_4677481_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.5e-54	84.1
AVF90446.1\|4677499_4678480_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.2e-134	66.6
AVF90447.1\|4678492_4678870_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	5.1e-48	73.6
AVF90448.1\|4678879_4679689_-	DNA methylase	A0A1C9II58	Salmonella_phage	2.0e-110	69.3
AVF90449.1\|4679685_4680639_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	2.8e-103	75.5
AVF90450.1\|4680628_4680808_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	1.6e-15	75.0
AVF90451.1\|4681045_4681498_-	hypothetical protein	K7PJS5	Enterobacterial_phage	5.9e-67	87.2
AVF90452.1\|4681526_4681790_-	Cro/Cl family transcriptional regulator	D0UIL8	Aggregatibacter_phage	1.8e-12	46.6
AVF90453.1\|4681891_4682368_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	2.0e-12	45.3
AVF90454.1\|4682538_4683693_+	type I restriction endonuclease subunit R	A0A1S5SAB0	Streptococcus_phage	1.5e-34	28.2
AVF90455.1\|4684102_4684402_+	hypothetical protein	K7PJS4	Enterobacterial_phage	4.2e-13	47.6
AVF90456.1\|4684401_4685187_+	hypothetical protein	C7BGF1	Burkholderia_phage	1.3e-61	51.8
AVF90457.1\|4685314_4685659_+	hypothetical protein	NA	NA	NA	NA
AVF90458.1\|4685651_4686026_+	hypothetical protein	NA	NA	NA	NA
AVF90459.1\|4686025_4686241_+	molecular chaperone DnaJ	R9TNC2	Aeromonas_phage	1.3e-37	95.8
AVF90460.1\|4686237_4686876_+	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	1.1e-47	63.1
AVF90461.1\|4686883_4687072_+	hypothetical protein	G3CFG7	Escherichia_phage	2.6e-13	63.0
AVF90462.1\|4687509_4687770_-	hypothetical protein	NA	NA	NA	NA
AVF90463.1\|4687984_4689160_-	DUF4102 domain-containing protein	A0A2R2Z2Y0	Escherichia_phage	2.8e-201	85.8
AVF90464.1\|4689793_4690822_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	7.7e-06	37.2
AVF90465.1\|4690837_4691131_+	GGDEF domain-containing protein	NA	NA	NA	NA
AVF90466.1\|4691249_4691732_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
AVF91232.1\|4692095_4692956_+	hypothetical protein	A0A2H4JEC4	uncultured_Caudovirales_phage	8.5e-06	56.8
AVF90467.1\|4692986_4693895_-	transcriptional regulator CynR	A0A2P0ZL89	Lactobacillus_phage	2.3e-09	23.8
AVF90468.1\|4694027_4694486_+	nucleoside deaminase	S4VYZ2	Pandoravirus	3.6e-11	39.4
AVF90469.1\|4694482_4695679_+	cyanate transporter	NA	NA	NA	NA
AVF91233.1\|4696016_4696088_+	membrane protein YpdK	NA	NA	NA	NA
AVF90470.1\|4696157_4697372_-	alanine transaminase	NA	NA	NA	NA
AVF90471.1\|4697754_4699452_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	2.3e-47	28.7
AVF91234.1\|4699463_4700201_+	DNA-binding response regulator	A0A2R2ZGH8	Clostridioides_phage	1.5e-14	26.3
AVF90472.1\|4700255_4701221_-	glucokinase	NA	NA	NA	NA
AVF91235.1\|4701484_4702720_+	ion channel protein	NA	NA	NA	NA
AVF90473.1\|4702716_4704378_-	indolepyruvate decarboxylase	NA	NA	NA	NA
AVF90474.1\|4704558_4705551_+	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
AVF90475.1\|4705681_4706041_+	DUF2502 domain-containing protein	NA	NA	NA	NA
AVF90476.1\|4706098_4707340_-	divalent metal cation transporter	NA	NA	NA	NA
AVF90477.1\|4707685_4708888_+	NupC/NupG family nucleoside CNT transporter	NA	NA	NA	NA
AVF90478.1\|4708936_4711108_-	sensor domain-containing phosphodiesterase	NA	NA	NA	NA
AVF90479.1\|4711729_4712083_+	hypothetical protein	NA	NA	NA	NA
AVF90480.1\|4712086_4712479_+	hypothetical protein	NA	NA	NA	NA
AVF90481.1\|4712533_4713952_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_9

4871371 : 4950422

Salmonella_phage(71.43%)

tRNA,integrase,tail,head,plate,portal,capsid

attL 4915924:4915970|attR 4951173:4951219

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF90623.1\|4871371_4872109_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
AVF90624.1\|4872240_4873572_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	3.1e-47	31.6
AVF90625.1\|4873618_4874002_-	autonomous glycyl radical cofactor GrcA	A0A193GZ98	Escherichia_phage	4.0e-32	79.3
AVF90626.1\|4874313_4875003_+	uracil-DNA glycosylase	A0A077BCN4	Equid_alphaherpesvirus	5.5e-56	52.6
AVF90627.1\|4875059_4876130_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
AVF90628.1\|4876333_4876759_+	thioredoxin TrxC	A0A1J0GW78	Streptomyces_phage	6.0e-13	40.2
AVF90629.1\|4876828_4877527_+	DTW domain-containing protein	NA	NA	NA	NA
AVF90630.1\|4877561_4880213_+	protein lysine acetyltransferase	NA	NA	NA	NA
AVF90631.1\|4880333_4881689_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
AVF90632.1\|4881730_4882054_+	hypothetical protein	NA	NA	NA	NA
AVF90633.1\|4882057_4883356_-	MFS transporter	Q6JIH2	Burkholderia_virus	3.1e-44	31.5
AVF90634.1\|4883439_4883697_-	hypothetical protein	NA	NA	NA	NA
AVF90635.1\|4889205_4891779_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	6.9e-128	35.4
AVF90636.1\|4891907_4892639_-	peptidoglycan editing factor PgeF	NA	NA	NA	NA
AVF90637.1\|4892635_4893616_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
AVF90638.1\|4893747_4894485_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
AVF90639.1\|4894756_4895092_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
AVF91240.1\|4895198_4895246_+	hypothetical protein	NA	NA	NA	NA
AVF90640.1\|4895346_4896507_+	prephenate dehydratase	NA	NA	NA	NA
AVF90641.1\|4896503_4897376_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
AVF90642.1\|4897438_4898560_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
AVF90643.1\|4898569_4899640_-	3-deoxy-7-phosphoheptulonate synthase	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	1.1e-90	51.8
AVF90644.1\|4899982_4900492_+	DUF4154 domain-containing protein	NA	NA	NA	NA
AVF90645.1\|4900484_4901708_+	diguanylate cyclase	NA	NA	NA	NA
AVF90646.1\|4901721_4902204_+	hypothetical protein	NA	NA	NA	NA
AVF90647.1\|4902212_4903571_-	PepSY domain-containing protein	NA	NA	NA	NA
AVF90648.1\|4903625_4904087_-	DUF2946 domain-containing protein	NA	NA	NA	NA
AVF90649.1\|4904206_4904554_-	50S ribosomal protein L19	NA	NA	NA	NA
AVF90650.1\|4904593_4905361_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
AVF90651.1\|4905392_4905941_-	ribosome maturation factor RimM	NA	NA	NA	NA
AVF90652.1\|4905959_4906208_-	30S ribosomal protein S16	NA	NA	NA	NA
AVF90653.1\|4906467_4907832_-	signal recognition particle protein	NA	NA	NA	NA
AVF90654.1\|4907995_4908787_+	inner membrane protein YpjD	NA	NA	NA	NA
AVF90655.1\|4908806_4910093_+	DUF21 domain-containing protein	NA	NA	NA	NA
AVF90656.1\|4910212_4910803_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
AVF90657.1\|4910927_4911806_+	NAD(+) kinase	NA	NA	NA	NA
AVF90658.1\|4911892_4913554_+	DNA repair protein RecN	NA	NA	NA	NA
AVF90659.1\|4913700_4914042_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
AVF90660.1\|4914111_4914402_-	RnfH family protein	NA	NA	NA	NA
AVF90661.1\|4914391_4914868_-	ubiquinone-binding protein	NA	NA	NA	NA
AVF90662.1\|4914978_4915461_+	SsrA-binding protein	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
4915924:4915970	attL	NA	NA	NA	NA
AVF90663.1\|4916064_4916436_+	hypothetical protein	NA	NA	NA	NA
AVF90664.1\|4916493_4916712_-	levansucrase regulator	Q53ZE7	Salmonella_virus	1.7e-27	73.6
AVF90665.1\|4916778_4917876_-	late control protein D	E5G6Q3	Salmonella_phage	7.9e-174	84.4
AVF90666.1\|4917872_4918358_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.0e-57	77.0
AVF90667.1\|4918354_4920982_-\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	8.6e-118	38.6
AVF90668.1\|4920974_4921094_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
AVF90669.1\|4921108_4921408_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	2.8e-33	79.0
AVF90670.1\|4921460_4921976_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
AVF90671.1\|4921985_4923158_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	7.3e-210	92.8
AVF90672.1\|4923307_4924498_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.6e-50	52.1
AVF90673.1\|4924509_4924806_-	hypothetical protein	NA	NA	NA	NA
AVF90674.1\|4927147_4927744_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	7.5e-54	56.4
AVF90675.1\|4927736_4928645_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.1e-107	67.2
AVF90676.1\|4928631_4928994_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	4.4e-49	85.6
AVF90677.1\|4928990_4929563_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.0e-76	71.7
AVF90678.1\|4929640_4930531_+	hypothetical protein	E5G6N5	Salmonella_phage	1.5e-119	74.2
AVF90679.1\|4930493_4930940_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.0e-60	81.5
AVF90680.1\|4930932_4931364_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	1.7e-68	88.1
AVF90681.1\|4931326_4931530_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.7e-27	89.6
AVF90682.1\|4931459_4931888_-	hypothetical protein	A0A1S6KZX8	Salmonella_phage	1.5e-56	82.9
AVF90683.1\|4931884_4932400_-	lysozyme	E5G6N1	Salmonella_phage	9.0e-72	75.3
AVF90684.1\|4932380_4932596_-	hypothetical protein	E5G6N0	Salmonella_phage	2.0e-20	66.2
AVF90685.1\|4932599_4932803_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	3.8e-34	100.0
AVF90686.1\|4932802_4933270_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.7e-48	58.1
AVF90687.1\|4933368_4934022_-	hypothetical protein	E5G6M7	Salmonella_phage	1.8e-56	56.6
AVF90688.1\|4934025_4935174_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	4.6e-132	68.8
AVF90689.1\|4935189_4936017_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	9.1e-74	57.0
AVF90690.1\|4936166_4938026_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	2.9e-301	81.9
AVF90691.1\|4938025_4939078_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.9e-155	79.3
AVF90692.1\|4939122_4939461_-	DUF4325 domain-containing protein	NA	NA	NA	NA
AVF91241.1\|4939460_4940435_-	hypothetical protein	A4PE73	Ralstonia_virus	1.6e-53	42.1
AVF91242.1\|4940888_4941929_+	DUF262 domain-containing protein	A0A193GZU5	Escherichia_phage	1.0e-05	28.1
AVF91243.1\|4942635_4942851_-	hypothetical protein	J9Q7T5	Salmonella_phage	5.3e-10	63.0
AVF91244.1\|4943168_4943357_-	hypothetical protein	A0A1S6L006	Salmonella_phage	1.8e-25	100.0
AVF90693.1\|4943540_4945949_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.8
AVF90694.1\|4945929_4946817_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.6e-119	73.7
AVF90695.1\|4946813_4947041_-	hypothetical protein	A0A1S6L007	Salmonella_phage	1.9e-34	90.7
AVF90696.1\|4947040_4947274_-	DUF2732 domain-containing protein	A0A1S6L021	Salmonella_phage	4.3e-29	88.3
AVF90697.1\|4947341_4947680_-	hypothetical protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
AVF90698.1\|4947643_4947844_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	5.9e-19	68.8
AVF90699.1\|4947851_4948361_-	hypothetical protein	A0A1S6L008	Salmonella_phage	1.9e-77	85.2
AVF90700.1\|4948462_4948636_-	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	6.2e-25	98.2
AVF90701.1\|4948758_4949388_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
AVF90702.1\|4949390_4950422_+\|integrase	integrase	A0A1S6L016	Salmonella_phage	1.0e-191	94.1
4951173:4951219	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014072

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26528 : 53061

Escherichia_phage(30.0%)

integrase,protease,transposase

attL 25387:25401|attR 38690:38704

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
25387:25401	attL	NA	NA	NA	NA
AVF91281.1\|26528_26801_-\|transposase	transposase	NA	NA	NA	NA
AVF91282.1\|26739_27753_-\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
AVF91348.1\|27901_28435_+	aminoglycoside nucleotidyltransferase ANT(2'')-Ia	NA	NA	NA	NA
AVF91283.1\|28514_29303_+	APH(3') family aminoglycoside O-phosphotransferase AphA16	E4ZFP6	Streptococcus_phage	1.4e-60	47.2
AVF91349.1\|29426_30272_+	ANT(3'') family aminoglycoside nucleotidyltransferase	NA	NA	NA	NA
AVF91284.1\|30301_31129_+	oxacillin-hydrolyzing class D beta-lactamase OXA-2	NA	NA	NA	NA
AVF91285.1\|31264_31612_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
AVF91286.1\|31605_32445_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
AVF91287.1\|32374_32554_-	hypothetical protein	NA	NA	NA	NA
AVF91288.1\|32572_33073_+	N-acetyltransferase	NA	NA	NA	NA
AVF91289.1\|33414_34179_+\|transposase	IS6 family transposase IS6100	A0A077SL39	Escherichia_phage	4.3e-86	65.7
AVF91290.1\|34220_34397_+	resolvase	NA	NA	NA	NA
AVF91291.1\|34416_34629_-	DUF3330 domain-containing protein	NA	NA	NA	NA
AVF91350.1\|34591_34711_+	mercury resistance protein	NA	NA	NA	NA
AVF91292.1\|34694_34931_-	mercury resistance protein	NA	NA	NA	NA
AVF91293.1\|34927_35293_-	transcriptional regulator	NA	NA	NA	NA
AVF91294.1\|35310_36996_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.8e-39	29.1
AVF91295.1\|37034_37460_-	mercury transport protein MerC	NA	NA	NA	NA
AVF91296.1\|37487_37763_-	mercuric transporter periplasmic component	NA	NA	NA	NA
AVF91297.1\|37778_38144_-	mercuric transport protein	NA	NA	NA	NA
AVF91298.1\|38215_38671_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
AVF91299.1\|40057_41026_-\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	7.7e-181	96.9
38690:38704	attR	NA	NA	NA	NA
AVF91300.1\|41146_42007_+	class A extended-spectrum beta-lactamase SHV-18	A0A077SL40	Escherichia_phage	1.9e-154	98.6
AVF91301.1\|42027_42789_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
AVF91302.1\|42896_45794_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	2.5e-182	37.8
AVF91303.1\|45888_46494_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
AVF91304.1\|47076_49164_-	conjugal transfer protein TrbC	NA	NA	NA	NA
AVF91305.1\|49176_50127_-	DsbC family protein	NA	NA	NA	NA
AVF91306.1\|50137_51400_-	conjugal transfer protein TrbA	NA	NA	NA	NA
AVF91307.1\|51444_51840_-	lytic transglycosylase	NA	NA	NA	NA
AVF91308.1\|51944_52328_-	hypothetical protein	NA	NA	NA	NA
AVF91309.1\|52407_53061_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP014073

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

977 : 8140

uncultured_Caudovirales_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVF91354.1\|977_1556_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.9e-23	37.7
AVF91355.1\|1731_2937_+	chromate transporter	NA	NA	NA	NA
AVF91356.1\|2947_3253_+	PadR family transcriptional regulator	NA	NA	NA	NA
AVF91357.1\|3381_4080_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	3.8e-89	68.9
AVF91358.1\|4165_4486_+	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	2.9e-20	44.8
AVF91499.1\|4530_5820_+	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	1.7e-167	71.4
AVF91359.1\|5832_6258_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	1.9e-51	72.1
AVF91360.1\|6371_6650_+	hypothetical protein	NA	NA	NA	NA
AVF91361.1\|6980_7274_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	1.4e-48	95.9
AVF91362.1\|7372_8140_-	ferric citrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2

DBSCAN-SWA_2

22802 : 83193

Bacillus_phage(25.0%)

integrase,transposase

attL 15378:15406|attR 60422:60450

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
15378:15406	attL	NA	NA	NA	NA
AVF91376.1\|22802_23603_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.1e-51	89.4
AVF91501.1\|23641_23989_-	hypothetical protein	NA	NA	NA	NA
AVF91377.1\|24350_25160_-	hypothetical protein	NA	NA	NA	NA
AVF91378.1\|25156_26077_-	hypothetical protein	NA	NA	NA	NA
AVF91379.1\|26646_27735_+	transcriptional regulator	NA	NA	NA	NA
AVF91380.1\|27745_29119_+	hypothetical protein	NA	NA	NA	NA
AVF91381.1\|29303_30632_+	nucleotidyltransferase	NA	NA	NA	NA
AVF91382.1\|30639_31215_+	hypothetical protein	NA	NA	NA	NA
AVF91383.1\|31680_31911_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
AVF91384.1\|31907_32324_+	PIN domain nuclease	NA	NA	NA	NA
AVF91385.1\|32397_33960_+	ATP-dependent endonuclease	NA	NA	NA	NA
AVF91386.1\|33944_34967_+	DNA helicase UvrD	NA	NA	NA	NA
AVF91502.1\|35510_36419_+	HNH endonuclease	NA	NA	NA	NA
AVF91387.1\|36604_36955_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	6.0e-19	51.4
AVF91388.1\|37102_37534_-	silver-binding protein SilE	NA	NA	NA	NA
AVF91389.1\|37784_39260_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.0e-27	30.1
AVF91390.1\|39252_39933_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	2.1e-31	35.6
AVF91391.1\|40122_41508_+	hypothetical protein	NA	NA	NA	NA
AVF91392.1\|41536_41890_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
AVF91393.1\|42003_43296_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
AVF91394.1\|43306_46453_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	8.0e-62	22.6
AVF91395.1\|46539_46980_+	hypothetical protein	NA	NA	NA	NA
AVF91396.1\|47106_49563_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
AVF91397.1\|49603_49801_+	DUF2933 domain-containing protein	NA	NA	NA	NA
AVF91398.1\|49834_50572_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
AVF91399.1\|50860_51310_-	copper resistance protein	NA	NA	NA	NA
AVF91400.1\|51543_53361_+	multicopper oxidase PcoA	NA	NA	NA	NA
AVF91401.1\|53360_54257_+	copper resistance protein B	NA	NA	NA	NA
AVF91402.1\|54296_54677_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
AVF91403.1\|54681_55611_+	copper resistance protein D	NA	NA	NA	NA
AVF91404.1\|55665_56346_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
AVF91405.1\|56342_57743_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
AVF91406.1\|57958_58393_+	copper-binding protein	NA	NA	NA	NA
AVF91407.1\|59425_60394_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-182	98.1
AVF91408.1\|60844_61813_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	3.8e-172	91.3
60422:60450	attR	NA	NA	NA	NA
AVF91409.1\|62865_63942_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AVF91410.1\|65380_65809_+	N-acetyltransferase	NA	NA	NA	NA
AVF91411.1\|65841_66267_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	6.6e-52	72.1
AVF91412.1\|66279_67569_-	arsenical efflux pump membrane protein ArsB	A0A2H4J144	uncultured_Caudovirales_phage	3.3e-171	73.8
AVF91413.1\|67616_69368_-	arsenical pump-driving ATPase	NA	NA	NA	NA
AVF91414.1\|69385_69748_-	arsenical resistance operon transcriptional repressor ArsD	NA	NA	NA	NA
AVF91415.1\|69799_70150_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	1.1e-23	50.9
AVF91416.1\|70507_70756_+	hypothetical protein	NA	NA	NA	NA
AVF91417.1\|70752_71964_+	hypothetical protein	NA	NA	NA	NA
AVF91418.1\|72097_72589_+	DNA-binding protein	NA	NA	NA	NA
AVF91419.1\|72649_72853_+	hemolysin expression modulator Hha	NA	NA	NA	NA
AVF91420.1\|72866_73097_+	hypothetical protein	NA	NA	NA	NA
AVF91421.1\|73541_73808_+	DUF1778 domain-containing protein	NA	NA	NA	NA
AVF91422.1\|73795_74278_+	N-acetyltransferase	NA	NA	NA	NA
AVF91423.1\|74274_74511_+	hypothetical protein	NA	NA	NA	NA
AVF91424.1\|74572_75541_-\|transposase	IS5-like element IS903B family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-183	97.8
AVF91425.1\|75737_76178_-	VGR-related protein	NA	NA	NA	NA
AVF91426.1\|76479_77292_-	ribokinase	NA	NA	NA	NA
AVF91427.1\|77304_78279_-	SIS domain-containing protein	NA	NA	NA	NA
AVF91428.1\|78283_79069_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
AVF91429.1\|79295_80060_+	GntR family transcriptional regulator	NA	NA	NA	NA
AVF91430.1\|80160_80913_-	VOC family protein	NA	NA	NA	NA
AVF91431.1\|80909_81434_-	hypothetical protein	NA	NA	NA	NA
AVF91432.1\|82488_83193_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.4e-138	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014071

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014072

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP014073

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection