CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP014134	Vibrio diabolicus strain LMG 3418 chromosome 1, complete sequence	0 crisprs	DEDDh,DinG,cas3,csx1,WYL,csa3	0	0	3	0
CP014133	Vibrio diabolicus strain LMG 3418 chromosome 2, complete sequence	0 crisprs	csa3,WYL,DEDDh,cas3,RT	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1214590 : 1221374

Staphylococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH26842.1\|1214590_1215061_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.7e-32	48.7
AVH26843.1\|1215230_1216340_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	9.4e-66	40.1
AVH26844.1\|1216513_1217167_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	3.1e-32	36.6
AVH26845.1\|1217175_1218303_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	1.0e-43	33.7
AVH26846.1\|1218310_1218760_-	transcriptional regulator NrdR	NA	NA	NA	NA
AVH26847.1\|1218966_1220217_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	2.5e-99	48.5
AVH26848.1\|1220234_1221374_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.0e-62	41.7

DBSCAN-SWA_2

2498675 : 2515915

uncultured_Mediterranean_phage(18.18%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH27941.1\|2498675_2500316_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	4.2e-155	52.2
AVH27942.1\|2500394_2501696_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	4.1e-137	60.6
AVH27943.1\|2502161_2502443_+	cell division protein FtsB	NA	NA	NA	NA
AVH27944.1\|2502444_2503149_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	A0A2H4UTB4	Bodo_saltans_virus	1.2e-05	23.0
AVH27945.1\|2503166_2503643_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
AVH27946.1\|2503689_2504733_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
AVH27947.1\|2504732_2505509_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.9e-66	50.8
AVH27948.1\|2505508_2506135_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	53.3
AVH27949.1\|2506148_2507072_+	hypothetical protein	D7RWE0	Brochothrix_phage	4.1e-06	35.2
AVH27950.1\|2507152_2508139_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	2.0e-35	35.2
AVH27951.1\|2508221_2510783_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.0e-30	22.8
AVH27952.1\|2510867_2511350_+	damage-inducible protein CinA	B5TK85	Pseudomonas_phage	1.3e-27	48.7
AVH27953.1\|2511550_2512594_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	6.9e-111	60.4
AVH27954.1\|2512722_2513190_+	recombination regulator RecX	NA	NA	NA	NA
AVH27955.1\|2513332_2515915_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	2.0e-79	38.3

DBSCAN-SWA_3

2980799 : 3016602

Vibrio_phage(96.97%)

terminase,capsid,tail,head,portal,integrase

attL 2976736:2976749|attR 2982747:2982760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2976736:2976749	attL	NA	NA	NA	NA
AVH28358.1\|2980799_2981822_-\|integrase	integrase	R9TMQ4	Vibrio_phage	2.0e-99	53.8
AVH28359.1\|2982349_2984167_-	hypothetical protein	NA	NA	NA	NA
2982747:2982760	attR	NA	NA	NA	NA
AVH28360.1\|2984186_2985773_-	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	3.1e-78	63.2
AVH28361.1\|2985864_2987289_-	hypothetical protein	NA	NA	NA	NA
AVH28362.1\|2987281_2987950_-	chromosome partitioning protein ParA	A0A166YHA0	Vibrio_phage	1.3e-57	54.2
AVH28363.1\|2988103_2988316_+	hypothetical protein	U3PFJ1	Vibrio_phage	3.0e-21	68.6
AVH28364.1\|2988426_2988966_+	transcriptional regulator	U3PIJ8	Vibrio_phage	1.7e-65	67.0
AVH28365.1\|2988975_2989311_+	hypothetical protein	NA	NA	NA	NA
AVH28366.1\|2989374_2989677_+	hypothetical protein	NA	NA	NA	NA
AVH28367.1\|2989658_2989886_+	hypothetical protein	U3PIK2	Vibrio_phage	4.8e-25	70.7
AVH28368.1\|2989882_2990122_+	hypothetical protein	NA	NA	NA	NA
AVH28369.1\|2990108_2992196_+	hypothetical protein	A0A2I7RNF8	Vibrio_phage	2.1e-167	46.7
AVH28370.1\|2992380_2993112_+	hypothetical protein	NA	NA	NA	NA
AVH28371.1\|2993111_2993687_+	hypothetical protein	NA	NA	NA	NA
AVH28372.1\|2993792_2994698_+	hypothetical protein	NA	NA	NA	NA
AVH28373.1\|2994813_2995146_-	hypothetical protein	NA	NA	NA	NA
AVH28730.1\|2995389_2995605_+	hypothetical protein	U3PDF9	Vibrio_phage	5.3e-18	70.6
AVH28374.1\|2995612_2996104_+	hypothetical protein	NA	NA	NA	NA
AVH28375.1\|2996089_2996341_-	transcriptional regulator	R9TNQ2	Vibrio_phage	5.4e-38	90.4
AVH28376.1\|2996406_2997438_-\|portal	phage portal protein	A0A2I7RNI9	Vibrio_phage	8.8e-151	75.7
AVH28377.1\|2997434_2999222_-\|terminase	terminase	A0A2I7RNI3	Vibrio_phage	6.2e-269	79.3
AVH28378.1\|2999387_3000254_+\|capsid	phage capsid protein	A0A2I7RNH1	Vibrio_phage	2.4e-93	65.7
AVH28379.1\|3000253_3001276_+\|capsid	phage major capsid protein, P2 family	R9TPZ5	Vibrio_phage	1.2e-110	62.5
AVH28380.1\|3001268_3001985_+\|terminase	terminase	A0A2I7RNJ0	Vibrio_phage	1.1e-86	68.7
AVH28381.1\|3002094_3002559_+\|head	head protein	U3PFL1	Vibrio_phage	1.4e-52	68.8
AVH28382.1\|3002555_3003044_+	hypothetical protein	R9TRS7	Vibrio_phage	2.8e-46	55.1
AVH28383.1\|3003036_3003696_+	phage virion morphogenesis protein	U3PDG7	Vibrio_phage	3.4e-79	70.6
AVH28384.1\|3003698_3004829_+	DUF2586 domain-containing protein	U3PB71	Vibrio_phage	3.5e-124	62.5
AVH28385.1\|3004832_3005285_+	DUF2597 domain-containing protein	U3PCG7	Vibrio_phage	4.4e-54	67.1
AVH28386.1\|3005305_3005512_+	molecular chaperone DnaK	A0A2I7RNJ6	Vibrio_phage	4.9e-13	52.9
AVH28387.1\|3005516_3005726_+	hypothetical protein	A0A2I7RNJ2	Vibrio_phage	4.4e-17	58.8
AVH28388.1\|3005712_3006303_+	lysozyme	A0A2I7RNI5	Vibrio_phage	4.2e-65	59.7
AVH28389.1\|3006277_3006619_+	hypothetical protein	R9TNR2	Vibrio_phage	3.8e-34	68.1
AVH28731.1\|3006587_3006830_+	hypothetical protein	U3PCH1	Vibrio_phage	6.2e-23	69.4
AVH28390.1\|3006822_3007104_+	hypothetical protein	A0A160DHS7	Vibrio_phage	2.4e-26	66.3
AVH28391.1\|3007319_3009299_+\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	3.8e-211	60.2
AVH28392.1\|3009288_3009630_+	DUF2590 domain-containing protein	R9TMS7	Vibrio_phage	1.0e-34	70.0
AVH28393.1\|3009626_3010832_+	hypothetical protein	R9TRT3	Vibrio_phage	1.9e-160	69.5
AVH28394.1\|3010824_3011421_+\|tail	phage tail protein	R9TQ05	Vibrio_phage	3.4e-70	67.6
AVH28395.1\|3011427_3013206_+	hypothetical protein	A0A160DJT8	Vibrio_phage	1.5e-86	55.3
AVH28396.1\|3013209_3013611_+	hypothetical protein	NA	NA	NA	NA
AVH28397.1\|3013607_3014498_+	hypothetical protein	R9TRQ4	Vibrio_phage	3.0e-91	57.8
AVH28398.1\|3014491_3014965_+	DNA-binding protein	R9TPX7	Vibrio_phage	2.5e-36	55.5
AVH28399.1\|3014961_3016602_+	hypothetical protein	A0A160DHT6	Vibrio_phage	4.6e-210	66.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP014133

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1437317 : 1445841

Vibrio_phage(100.0%)

coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AVH29952.1\|1437317_1437686_-	hypothetical protein	Q9MCC3	Vibrio_phage	4.3e-60	97.5
AVH29953.1\|1437844_1438456_+	hypothetical protein	A0A1W6UG66	Vibrio_phage	2.7e-107	99.0
AVH29954.1\|1438452_1438668_+	hypothetical protein	A0A1W6UGD1	Vibrio_phage	1.3e-32	95.8
AVH29955.1\|1438591_1439800_+	phage replication protein	Q7DKP2	Vibrio_phage	3.2e-245	100.0
AVH29956.1\|1439803_1440157_+	DUF1293 domain-containing protein	A0A1W6UG87	Vibrio_phage	2.2e-61	100.0
AVH29957.1\|1440168_1440414_+	single-stranded DNA-binding protein	A0A1W6UH23	Vibrio_phage	2.6e-37	98.8
AVH29958.1\|1440424_1440658_+\|coat	phage coat protein	A0A1W6UG80	Vibrio_phage	1.7e-30	98.7
AVH29959.1\|1440789_1442319_+	methyl-accepting chemotaxis protein	O88107	Vibrio_phage	5.0e-142	79.5
AVH29960.1\|1442320_1442635_+	DUF2523 domain-containing protein	A0A1W6UG81	Vibrio_phage	6.1e-47	100.0
AVH29961.1\|1442631_1443774_+	assembly protein	A0A1W6UG53	Vibrio_phage	6.4e-203	97.4
AVH29962.1\|1444008_1445400_-	hypothetical protein	NA	NA	NA	NA
AVH29963.1\|1445475_1445841_-	regulator	Q9MCC4	Vibrio_phage	3.0e-61	95.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP014134

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP014133

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection